Citrus Sinensis ID: 024676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccEEEEEEccccccccEEEEEEccccEEEEccccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEEcccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEcc
Coil and Loop (DISEMBL)
mdkrkvavplvchghsrpvvdlfyspitpdgfflvsaskdsspmlrngetgdwigtfeghkgavwsccldanalfsasgsadFTAKLWDAltgdekhsfeHKHIVRACAFSEDTHLLLTGGFEKILRIFdlnrpdapprevgnssgsiRTVAWLHSDqtilssctdsggvrlwdarsgkivqtletkspvtsaevsrdgryittadgssvkfwdanhfglvkgynmpcntesaslepklgnifiaggedmwVHVFdfhtgeqig
Flexible Loop (DISEMBL)
mdkrkvavplvchghsrpvvdLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKivqtletkspvtsaevsrdgryittadgssvkfWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG
Low Complexity Region (SEG)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG
Disordered region (IsUnstruct)
*****VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSA**********GETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN***************IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL*************DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT*****
Disordered Region (DISOPRED)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG
Disordered Region (DISEMBL)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA*********GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL************RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG
Disordered Region (DISPRO)
****KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q54LT8	293	Serine-threonine kinase r	yes	no	0.954	0.860	0.511	2e-66
Q5XIG8	350	Serine-threonine kinase r	yes	no	0.954	0.72	0.458	3e-57
Q9Y3F4	350	Serine-threonine kinase r	yes	no	0.954	0.72	0.458	4e-57
Q9Z1Z2	350	Serine-threonine kinase r	yes	no	0.954	0.72	0.458	4e-57
Q5E959	350	Serine-threonine kinase r	yes	no	0.954	0.72	0.458	5e-57
Q5ZL33	350	Serine-threonine kinase r	yes	no	0.954	0.72	0.450	5e-56
P0CS32	341	Eukaryotic translation in	no	no	0.893	0.692	0.286	2e-22
P0CS33	341	Eukaryotic translation in	N/A	no	0.893	0.692	0.286	2e-22
Q1HPW4	329	Eukaryotic translation in	N/A	no	0.897	0.720	0.279	2e-21
Q38884	328	Eukaryotic translation in	no	no	0.897	0.722	0.298	6e-21

>sp|Q54LT8|STRAP_DICDI Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/256 (51%), Positives = 168/256 (65%), Gaps = 4/256 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL+C GHSRPV DL +S    DG F+VSA  D SPMLRNGE GDWIGTFEGHKGAVWS  
Sbjct: 4   PLICSGHSRPVSDLSFSNENSDGSFIVSACLDGSPMLRNGENGDWIGTFEGHKGAVWSSR 63

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
            ++ A  + + SAD+T KLWD L G E  S EH+ IV+   FS +   ++TGG EKILRI
Sbjct: 64  FNSTASQALTASADYTVKLWDTLNGSEILSIEHQSIVKTADFSNNNSRVVTGGSEKILRI 123

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAW-LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           FDL RP+ P  ++   + +I+T  W +H+D  +LS   D   +R+WD RSG  V +L  K
Sbjct: 124 FDLERPNDPLLQISGHTNTIKTATWSVHNDDIVLSGGLDE-VIRIWDLRSGTQV-SLCAK 181

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S +TS E S+D R++ T  G+ V FWDA  F  +K Y++P +   ASL P   + FIAGG
Sbjct: 182 SSITSMEFSKDRRFLVTTAGNEVTFWDAQSFYPLKVYSLPFDVNCASLHPD-NSKFIAGG 240

Query: 248 EDMWVHVFDFHTGEQI 263
            D WVHV+DF TG +I
Sbjct: 241 SDFWVHVYDFSTGNEI 256

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.
Dictyostelium discoideum (taxid: 44689)

>sp|Q5XIG8|STRAP_RAT Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1

 Score =  221 bits (564), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D+++GE++
Sbjct: 244 DFKLYKYDYNSGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1

 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D+++GE++
Sbjct: 244 DFKLYKYDYNSGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Homo sapiens (taxid: 9606)

>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein OS=Mus musculus GN=Strap PE=1 SV=2

 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D+++GE++
Sbjct: 244 DFKLYKYDYNSGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Mus musculus (taxid: 10090)

>sp|Q5E959|STRAP_BOVIN Serine-threonine kinase receptor-associated protein OS=Bos taurus GN=STRAP PE=2 SV=1

 Score =  221 bits (563), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPE-KEFVVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D+++GE++
Sbjct: 244 DFKLYKYDYNSGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Bos taurus (taxid: 9913)

>sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associated protein OS=Gallus gallus GN=STRAP PE=2 SV=2

 Score =  217 bits (553), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 165/255 (64%), Gaps = 3/255 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S +TP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGVTPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV++  F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELITLAHKHIVKSVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DL++P+A P  V   +  I+   W   D+ ILS+  D   VRLWD  +   V+ L    
Sbjct: 127 YDLSKPEAEPDVVSGHTSGIKKALWSSDDKQILSA--DDKTVRLWDRSTMTEVKALNVAM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G+ +    G ++ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYVPEGQILVITYGKTIAFHSAETLEQIKSFEAPATINSASLHPE-KECLVAGGE 243

Query: 249 DMWVHVFDFHTGEQI 263
           D  ++ +D++TGE++
Sbjct: 244 DFKLYKYDYNTGEEL 258

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.

Gallus gallus (taxid: 9031)

>sp|P0CS32|EIF3I_CRYNJ Eukaryotic translation initiation factor 3 subunit I OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIF34 PE=3 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 26/262 (9%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKG 62
           P++  GH R +  + ++    +G  L SASKDS         G+ +GT+      +GH G
Sbjct: 3   PIILQGHERSLNQIVFNS---EGDLLFSASKDSVVNAWYTSNGERLGTYGGIKGGDGHNG 59

Query: 63  AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT--- 119
           +VW+  +D+   F  +G AD   KLW+  TG+  +++E    V+  A++ED  + L+   
Sbjct: 60  SVWTVAVDSQTRFLLTGGADNAMKLWEVKTGECLYTWEFLTAVKRVAWNEDDDMFLSITE 119

Query: 120 --GGFEKILRIFDLNRPDAPPREVGNS-------SGSIRTVAWLHSDQTILSSCTDSGGV 170
              G   ++RIF +NR D  PR    +       SGS  TVA        + +  +SG +
Sbjct: 120 QRSGQPSVIRIFSINRED--PRSQSTTPITEMRLSGSRATVAIWAPLSDYIITGHESGKI 177

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMP 227
             +D ++G+ VQ +E +  + ++  ++S DG Y IT +   + + WD     ++K Y   
Sbjct: 178 AKYDVKTGEEVQAVEDEHSALISDIQLSPDGTYFITASKDKTARLWDIETLEVMKVYTTE 237

Query: 228 CNTESASLEPKLGNIFIAGGED 249
               SA + P    I + GG+D
Sbjct: 238 TPVNSAVITPDRPYIILGGGQD 259

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS33|EIF3I_CRYNB Eukaryotic translation initiation factor 3 subunit I OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TIF34 PE=3 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 26/262 (9%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKG 62
           P++  GH R +  + ++    +G  L SASKDS         G+ +GT+      +GH G
Sbjct: 3   PIILQGHERSLNQIVFNS---EGDLLFSASKDSVVNAWYTSNGERLGTYGGIKGGDGHNG 59

Query: 63  AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT--- 119
           +VW+  +D+   F  +G AD   KLW+  TG+  +++E    V+  A++ED  + L+   
Sbjct: 60  SVWTVAVDSQTRFLLTGGADNAMKLWEVKTGECLYTWEFLTAVKRVAWNEDDDMFLSITE 119

Query: 120 --GGFEKILRIFDLNRPDAPPREVGNS-------SGSIRTVAWLHSDQTILSSCTDSGGV 170
              G   ++RIF +NR D  PR    +       SGS  TVA        + +  +SG +
Sbjct: 120 QRSGQPSVIRIFSINRED--PRSQSTTPITEMRLSGSRATVAIWAPLSDYIITGHESGKI 177

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMP 227
             +D ++G+ VQ +E +  + ++  ++S DG Y IT +   + + WD     ++K Y   
Sbjct: 178 AKYDVKTGEEVQAVEDEHSALISDIQLSPDGTYFITASKDKTARLWDIETLEVMKVYTTE 237

Query: 228 CNTESASLEPKLGNIFIAGGED 249
               SA + P    I + GG+D
Sbjct: 238 TPVNSAVITPDRPYIILGGGQD 259

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q1HPW4|EIF3I_BOMMO Eukaryotic translation initiation factor 3 subunit I OS=Bombyx mori PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 17/254 (6%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL+  GH R +  + Y+    +G  L SA+KDS P +     G+ +GTF GH G +W   
Sbjct: 3   PLMLQGHQRAITQIKYNR---EGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 59

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-----TGGFE 123
           +D  ++   +G  D + +LWD  TG    + +    VR C FS   +          G  
Sbjct: 60  VDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAMGHP 119

Query: 124 KILRIFDLNRPD------APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
             + + D    D      AP  +   +   + ++ W   D+TI++   ++G +  WD R+
Sbjct: 120 CEVFVIDTRTIDETVSGQAPILKWEITDSKVTSMIWGSLDETIITG-HEAGDLIQWDLRT 178

Query: 178 GKIVQTL-ETKSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
           GK + ++ E    +T  ++SRDG  ++T +   + K +D N   L+K Y       SA+L
Sbjct: 179 GKKIHSVKEHTHQITDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAAL 238

Query: 236 EPKLGNIFIAGGED 249
            P L ++ + GG+D
Sbjct: 239 SPILDHVVLGGGQD 252

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Bombyx mori (taxid: 7091)

>sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 21/258 (8%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           P++  GH RP+  L Y+    +G  L S +KD +P L   + G+ +GT+ GH GAVW C 
Sbjct: 3   PILMKGHERPLTFLRYNR---EGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCD 59

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL--LLTGGFEKIL 126
           +  ++    +GSAD TAKLWD  +G E  +F+     R+  F+    L  + T  F    
Sbjct: 60  VSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRT 119

Query: 127 RIFDLNRPDAPPREVGNSS----------GSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176
               + R    P E    S            I    W   +QTI+S   D   +R+WDA 
Sbjct: 120 AAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDK-VIRIWDAE 178

Query: 177 SGKIVQTLET----KSPVTS-AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE 231
           +GK+++  +     K  +TS  + + D  ++T +   + K WD     L+K Y       
Sbjct: 179 TGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVN 238

Query: 232 SASLEPKLGNIFIAGGED 249
           + SL P L ++ + GG+D
Sbjct: 239 AVSLSPLLNHVVLGGGQD 256

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
224070853	350	predicted protein [Populus trichocarpa]	1.0	0.754	0.916	1e-141
224054150	350	predicted protein [Populus trichocarpa]	1.0	0.754	0.912	1e-141
255553039	336	serine-threonine kinase receptor-associa	1.0	0.785	0.905	1e-140
225442803	346	PREDICTED: serine-threonine kinase recep	1.0	0.763	0.886	1e-138
255576966	350	serine-threonine kinase receptor-associa	0.996	0.751	0.878	1e-135
225445396	348	PREDICTED: serine-threonine kinase recep	0.996	0.755	0.882	1e-135
449521643	353	PREDICTED: serine-threonine kinase recep	0.996	0.745	0.855	1e-134
449457113	353	PREDICTED: serine-threonine kinase recep	0.996	0.745	0.851	1e-133
356563065	352	PREDICTED: serine-threonine kinase recep	0.996	0.747	0.851	1e-133
356511630	352	PREDICTED: serine-threonine kinase recep	1.0	0.75	0.848	1e-133

>gi|224070853|ref|XP_002303265.1| predicted protein [Populus trichocarpa] gi|222840697|gb|EEE78244.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/264 (91%), Positives = 252/264 (95%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +ASGSADF+AKLWDALTGDE HSFEHKHIVRAC FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAASGSADFSAKLWDALTGDELHSFEHKHIVRACTFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIFDLNRPDAPPREVDNSPGSIRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVSRDGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPKLG
Sbjct: 181 VQTLETKSPVTSAEVSRDGRYITTADGSTVKFWDANHFGLVKSYDMPCNVESASLEPKLG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIG 264
           N F+AGGEDMW+HVFDFHTGEQIG
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIG 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054150|ref|XP_002298116.1| predicted protein [Populus trichocarpa] gi|222845374|gb|EEE82921.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/264 (91%), Positives = 251/264 (95%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADF+AKLWDALTGDE  SFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFSAKLWDALTGDELQSFEHKHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           GFEKILRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSC D GGVRLWD RSGKI
Sbjct: 121 GFEKILRIFDLNRPDAPPREVDNSPGSIRTVAWLHSDQTILSSCADIGGVRLWDIRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct: 181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNVESASLEPKFG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIG 264
           N F+AGGEDMW+HVFDFHTGEQIG
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIG 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553039|ref|XP_002517562.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis] gi|223543194|gb|EEF44726.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/264 (90%), Positives = 250/264 (94%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSC LD  AL +AS SADFTAKLWDALTGDE HSFEH+HIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCSLDTKALRAASASADFTAKLWDALTGDELHSFEHRHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILR+FDLNRPDAPPREV +S GSIRTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GMEKILRLFDLNRPDAPPREVNSSPGSIRTVAWLHSDQTILSSCTDMGGVRLWDIRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPCN ESASLEPKLG
Sbjct: 181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCNVESASLEPKLG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIG 264
           N F+AGGEDMW+HVFDFHTGEQIG
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIG 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442803|ref|XP_002285272.1| PREDICTED: serine-threonine kinase receptor-associated protein [Vitis vinifera] gi|297743376|emb|CBI36243.3| unnamed protein product [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 234/264 (88%), Positives = 250/264 (94%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSTPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSC LD NAL +ASGSADFTAKLWDALTGDE HSFEHKHIVRACAFSEDTH LLTG
Sbjct: 61  KGAVWSCSLDTNALRAASGSADFTAKLWDALTGDELHSFEHKHIVRACAFSEDTHFLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSCTD+GGVRLWD R+GKI
Sbjct: 121 GVEKVLRIFDLNRPDAPPREVENSPGSIRTVAWLHSDQTILSSCTDNGGVRLWDVRTGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           V TLETKSPVTSAEVS+DGRYITTADG++VKFWDANH+GLVK YNMPCN ESASLEPK G
Sbjct: 181 VHTLETKSPVTSAEVSQDGRYITTADGTTVKFWDANHYGLVKSYNMPCNMESASLEPKFG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIG 264
           N FIAGGEDMW+H+FDF+TGE+IG
Sbjct: 241 NKFIAGGEDMWIHMFDFNTGEEIG 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576966|ref|XP_002529368.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis] gi|223531188|gb|EEF33035.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/263 (87%), Positives = 245/263 (93%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKRVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADFTAK+WDALTGD  HSFEHKHIVRA AFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFTAKVWDALTGDVLHSFEHKHIVRASAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRIFDLNRPDAPPREV  S GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GIEKVLRIFDLNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITT DGS+VKFWDANHFGLVK Y+MPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTCDGSTVKFWDANHFGLVKSYDMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQI 263
           N FIAGGEDMW+HVFDFHTG++I
Sbjct: 241 NKFIAGGEDMWIHVFDFHTGDEI 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445396|ref|XP_002284993.1| PREDICTED: serine-threonine kinase receptor-associated protein [Vitis vinifera] gi|297738901|emb|CBI28146.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/263 (88%), Positives = 244/263 (92%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K++VAVPLVCHGHSRPVVDLFYSPITPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKRVAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADFTAK+WDALTGDE HSFEHKHIVRACAFSEDTH LLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFTAKIWDALTGDELHSFEHKHIVRACAFSEDTHSLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRIFDLNRPDAPPREV NS GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIFDLNRPDAPPREVDNSPGSVRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLET S VTSAEVS+DGRYI TADGSSVKFWDANHFGLVK Y MPC  ESASLEPK G
Sbjct: 181 VQTLETNSSVTSAEVSQDGRYIITADGSSVKFWDANHFGLVKSYKMPCTVESASLEPKNG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQI 263
           + FIAGGEDMW+ +FDFHTGE+I
Sbjct: 241 DKFIAGGEDMWIRLFDFHTGEEI 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521643|ref|XP_004167839.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Cucumis sativus]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/263 (85%), Positives = 245/263 (93%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VA+PLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKRVAIPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +A+GSADF+AK+WDALTGD  HSFEHKHIVRAC+FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAATGSADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRI+DLNRPDAPPREV  S GS+RTV WLHSDQTILSSCTD GGVRLWD RSG+I
Sbjct: 121 GLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTILSSCTDMGGVRLWDVRSGQI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQI 263
             FIAGGEDMW+HVFDFHTG++I
Sbjct: 241 MKFIAGGEDMWIHVFDFHTGDEI 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457113|ref|XP_004146293.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Cucumis sativus]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/263 (85%), Positives = 244/263 (92%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VA+PLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGE GDWIGTFEGH
Sbjct: 1   MDKKRVAIPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSNPMLRNGENGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +A+GSADF+AK+WDALTGD  HSFEHKHIVRAC+FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAATGSADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRI+DLNRPDAPPREV  S GS+RTV WLHSDQTILSSCTD GGVRLWD RSG+I
Sbjct: 121 GLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTILSSCTDMGGVRLWDVRSGQI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQI 263
             FIAGGEDMW+HVFDFHTG++I
Sbjct: 241 MKFIAGGEDMWIHVFDFHTGDEI 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563065|ref|XP_003549786.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Glycine max]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/263 (85%), Positives = 243/263 (92%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +A+ SADF+ K+WDALTGDE HSFEHKHI RACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAATASADFSTKVWDALTGDELHSFEHKHIARACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRI+D+NRPDAPPREV  S GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDAN++GLVK Y+MPC  ES SLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTIESVSLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQI 263
           N F+AGGEDMWVHVFDFHTG +I
Sbjct: 241 NKFVAGGEDMWVHVFDFHTGNEI 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511630|ref|XP_003524526.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Glycine max]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/264 (84%), Positives = 243/264 (92%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +A+ SADF+ K+WDALTGDE HSFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRI+D+NRPDAPPREV  S GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDAN++GLVK Y+MPC  ES SLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIG 264
           N F+AGGEDMWV VFDFHTG +I 
Sbjct: 241 NKFVAGGEDMWVRVFDFHTGNEIA 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2093182	341	AT3G15610 "AT3G15610" [Arabido	1.0	0.774	0.844	4.9e-124
TAIR|locus:2035179	343	AT1G52730 "AT1G52730" [Arabido	1.0	0.769	0.848	2.1e-123
TAIR|locus:2037818	333	AT1G15470 "AT1G15470" [Arabido	0.981	0.777	0.841	2.8e-121
DICTYBASE|DDB_G0286457	293	strap "putative serine-threoni	0.954	0.860	0.511	6.7e-65
FB|FBgn0034876	328	wmd "wing morphogenesis defect	0.962	0.774	0.476	1.8e-64
ZFIN|ZDB-GENE-040426-1110	329	strap "serine/threonine kinase	0.958	0.768	0.466	4.2e-63
UNIPROTKB|E2RBU1	350	STRAP "Uncharacterized protein	0.954	0.72	0.458	5e-60
UNIPROTKB|Q9Y3F4	350	STRAP "Serine-threonine kinase	0.954	0.72	0.458	5e-60
UNIPROTKB|Q5E959	350	STRAP "Serine-threonine kinase	0.954	0.72	0.458	6.4e-60
MGI|MGI:1329037	350	Strap "serine/threonine kinase	0.954	0.72	0.458	6.4e-60

TAIR|locus:2093182 AT3G15610 "AT3G15610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 223/264 (84%), Positives = 240/264 (90%)

Query:     1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
             M+K+KVA PLVCHGHSRPVVDLFYSPITPDGFFL+SASKDS PMLRNGETGDWIGTFEGH
Sbjct:     1 MEKKKVATPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSQPMLRNGETGDWIGTFEGH 60

Query:    61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
             KGAVWS CLD NAL +AS SADF+AKLWDALTGD  HSFEHKHIVRACAFS+DT  L+TG
Sbjct:    61 KGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKYLITG 120

Query:   121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
             GFEKILR+FDLNR DAPP E+  S GSIRT+ WLH DQTILSSCTD GGVRLWD RSGKI
Sbjct:   121 GFEKILRVFDLNRLDAPPTEIDKSPGSIRTLTWLHGDQTILSSCTDIGGVRLWDVRSGKI 180

Query:   181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
             VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct:   181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240

Query:   241 NIFIAGGEDMWVHVFDFHTGEQIG 264
             N F+AGGEDMWV +FDFHTG++IG
Sbjct:   241 NKFVAGGEDMWVRLFDFHTGKEIG 264

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2035179 AT1G52730 "AT1G52730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 224/264 (84%), Positives = 239/264 (90%)

Query:     1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
             M+K+KV +P VCHGHSRPVVDLFYSPITPDGFFL+SASKDS PMLRNGETGDWIGTFEGH
Sbjct:     1 MEKKKVTIPQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPMLRNGETGDWIGTFEGH 60

Query:    61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
             KGAVWS CLD NAL +AS SADF+AKLWDALTGD  HSFEHKHIVRACAFSEDT  LLTG
Sbjct:    61 KGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSEDTKSLLTG 120

Query:   121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
             GFEKILR+FD+NR DAPP EV  S GSIRT+ WLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct:   121 GFEKILRVFDMNRLDAPPTEVDKSPGSIRTLTWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query:   181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
             VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct:   181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240

Query:   241 NIFIAGGEDMWVHVFDFHTGEQIG 264
               F+AGGEDMWV VFDF+TGE+IG
Sbjct:   241 EKFVAGGEDMWVRVFDFYTGEEIG 264

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2037818 AT1G15470 "AT1G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 218/259 (84%), Positives = 235/259 (90%)

Query:     6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW 65
             +  PLVCHGHSRPVVD+ YSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGHKGAVW
Sbjct:     1 MGAPLVCHGHSRPVVDVAYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVW 60

Query:    66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI 125
             SC LD NA+ +AS SADFTAK+W+ALTGDE HSFEHKHIVRACAFSEDTH LLTGG EKI
Sbjct:    61 SCSLDKNAIRAASASADFTAKIWNALTGDELHSFEHKHIVRACAFSEDTHRLLTGGMEKI 120

Query:   126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185
             LRIFDLNRPDAPP+EVGNS GSIRTV WLHSD TILSSCTD+G +RLWD RS KIV TLE
Sbjct:   121 LRIFDLNRPDAPPKEVGNSPGSIRTVEWLHSDNTILSSCTDTGDIRLWDIRSDKIVHTLE 180

Query:   186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
             TKSPVTSAEVS+DGRYITTADGSSVKFWDA +FGL+K Y+MPCN ESASLEPK GN FIA
Sbjct:   181 TKSPVTSAEVSQDGRYITTADGSSVKFWDAKNFGLLKSYDMPCNVESASLEPKHGNTFIA 240

Query:   246 GGEDMWVHVFDFHTGEQIG 264
             GGEDMWVH FDF TGE+IG
Sbjct:   241 GGEDMWVHRFDFQTGEEIG 259

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0286457 strap "putative serine-threonine kinase receptor-associated protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 131/256 (51%), Positives = 168/256 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL+C GHSRPV DL +S    DG F+VSA  D SPMLRNGE GDWIGTFEGHKGAVWS  
Sbjct:     4 PLICSGHSRPVSDLSFSNENSDGSFIVSACLDGSPMLRNGENGDWIGTFEGHKGAVWSSR 63

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
              ++ A  + + SAD+T KLWD L G E  S EH+ IV+   FS +   ++TGG EKILRI
Sbjct:    64 FNSTASQALTASADYTVKLWDTLNGSEILSIEHQSIVKTADFSNNNSRVVTGGSEKILRI 123

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAW-LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
             FDL RP+ P  ++   + +I+T  W +H+D  +LS   D   +R+WD RSG  V +L  K
Sbjct:   124 FDLERPNDPLLQISGHTNTIKTATWSVHNDDIVLSGGLDEV-IRIWDLRSGTQV-SLCAK 181

Query:   188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
             S +TS E S+D R++ T  G+ V FWDA  F  +K Y++P +   ASL P   + FIAGG
Sbjct:   182 SSITSMEFSKDRRFLVTTAGNEVTFWDAQSFYPLKVYSLPFDVNCASLHPD-NSKFIAGG 240

Query:   248 EDMWVHVFDFHTGEQI 263
              D WVHV+DF TG +I
Sbjct:   241 SDFWVHVYDFSTGNEI 256

GO:0005575 "cellular_component" evidence=ND

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

FB|FBgn0034876 wmd "wing morphogenesis defect" [Drosophila melanogaster (taxid:7227)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 122/256 (47%), Positives = 173/256 (67%)

Query:     8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC 67
             +PL C GH+RPVV L +S I   G+FL+SA KD SPMLR+G+TGDW+GTFEGHKGAVW+ 
Sbjct:     9 IPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGDTGDWVGTFEGHKGAVWNA 68

Query:    68 CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR 127
              L+ NA  +ASG+ADFT K+W+A+TG E HSF+HKHIV++ AF  D+  ++TG  EK++R
Sbjct:    69 TLNRNATLAASGAADFTGKVWNAVTGAEIHSFQHKHIVKSVAFDRDSENIVTGSNEKLVR 128

Query:   128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
             +F+L +P+A P E    +G+I+   +   D+ I+S+  D   VRLWD  +G  VQ L+  
Sbjct:   129 VFNLEQPEAQPEEYAGHTGAIKRALFCRGDKCIISAAEDKT-VRLWDRMTGIEVQRLQFN 187

Query:   188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
             S   S E+S D   +T + GSS+ FW+ +    +K   +P N  SASL P   ++F+ GG
Sbjct:   188 SNPNSLEISSDNHILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDK-HVFVCGG 246

Query:   248 EDMWVHVFDFHTGEQI 263
             ED  ++ FD+ TG +I
Sbjct:   247 EDFKMYKFDYITGNEI 262

GO:0005102 "receptor binding" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040426-1110 strap "serine/threonine kinase receptor associated protein" [Danio rerio (taxid:7955)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 119/255 (46%), Positives = 175/255 (68%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+  A  +A+ +ADFTAK+WDA+TGDE  +  HKHIV++  F++D++ LLTGG +K+LRI
Sbjct:    67 LNTEATKAATAAADFTAKVWDAVTGDEVLTLAHKHIVKSVNFTQDSNYLLTGGNDKVLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DL++P+A P+E+   + +I+   W ++DQ ILS+  D   +RLWD  + + V+TL   +
Sbjct:   127 YDLSKPEAEPQEIAGHTSAIKKALWCNNDQQILSAADDKT-IRLWDKNTNEAVKTLSFDA 185

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   DG  +    G ++ F++A+   L+K  + P +  SASL P   + F+AGG+
Sbjct:   186 SVSSMEYIPDGETLVITYGRTIAFYNAHSLDLIKTVDAPASIHSASLHPDK-DFFVAGGD 244

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+ T E++
Sbjct:   245 DFKLYKYDYTTKEEM 259

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|E2RBU1 STRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 117/255 (45%), Positives = 166/255 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+++GE++
Sbjct:   244 DFKLYKYDYNSGEEL 258

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9Y3F4 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 117/255 (45%), Positives = 166/255 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+++GE++
Sbjct:   244 DFKLYKYDYNSGEEL 258

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|Q5E959 STRAP "Serine-threonine kinase receptor-associated protein" [Bos taurus (taxid:9913)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 117/255 (45%), Positives = 166/255 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFVVAGGE 243

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+++GE++
Sbjct:   244 DFKLYKYDYNSGEEL 258

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

MGI|MGI:1329037 Strap "serine/threonine kinase receptor associated protein" [Mus musculus (taxid:10090)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 117/255 (45%), Positives = 166/255 (65%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQI 263
             D  ++ +D+++GE++
Sbjct:   244 DFKLYKYDYNSGEEL 258

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005102 "receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54LT8	STRAP_DICDI	No assigned EC number	0.5117	0.9545	0.8600	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_I0447	hypothetical protein (350 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.130.1.1	hypothetical protein (417 aa)			•						0.485
	gw1.X.5093.1	hypothetical protein (378 aa)			•						0.484
	gw1.XII.1370.1	hypothetical protein (314 aa)			•						0.483
	eugene3.00030383	hypothetical protein (239 aa)			•						0.482
	gw1.XV.2558.1	annotation not avaliable (412 aa)			•						0.481
	gw1.IX.1982.1	hypothetical protein (424 aa)			•						0.481
	eugene3.00140830	hypothetical protein (166 aa)			•						0.481
	estExt_fgenesh4_pm.C_LG_IV0224	hypothetical protein (348 aa)			•						0.479
	eugene3.00160385	hypothetical protein (218 aa)			•						0.475
	gw1.XII.1531.1	hypothetical protein (314 aa)			•						0.453

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-33
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	4e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  121 bits (305), Expect = 5e-33
 Identities = 76/257 (29%), Positives = 127/257 (49%), Gaps = 14/257 (5%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH+  V  + +SP   DG  L + S D +  + + ETG+ + T +GH G V      A+ 
Sbjct: 7   GHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
            + ASGS+D T +LWD  TG+   +   H   V + AFS D  +L +   +K ++++D+ 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVT 191
                   +   +  + +VA+      + SS  D G ++LWD R+GK V TL      V 
Sbjct: 124 TGK-CLTTLRGHTDWVNSVAFSPDGTFVASSSQD-GTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 192 SAEVSRDG-RYITTADGSSVKFWDAN---HFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S   S DG + ++++   ++K WD +     G ++G+    N  S +  P  G +  +G 
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN--SVAFSPD-GYLLASGS 238

Query: 248 EDMWVHVFDFHTGEQIG 264
           ED  + V+D  TGE + 
Sbjct: 239 EDGTIRVWDLRTGECVQ 255

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (303), Expect = 1e-32
 Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 20/252 (7%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH+ PV D+  S    DG +L S S D +  L + ETG+ + T  GH   V S     + 
Sbjct: 49  GHTGPVRDVAASA---DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG 105

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
              +S S D T K+WD  TG    +   H   V + AFS D   + +   +  ++++DL 
Sbjct: 106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 133 RPDAPPREVGNSSG---SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS- 188
                 + V   +G    + +VA+    + +LSS +D G ++LWD  +GK + TL     
Sbjct: 166 ----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD-GTIKLWDLSTGKCLGTLRGHEN 220

Query: 189 PVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVK---GYNMPCNTESASLEPKLGNIFI 244
            V S   S DG  + +     +++ WD      V+   G+       S +  P  G    
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT--SLAWSPD-GKRLA 277

Query: 245 AGGEDMWVHVFD 256
           +G  D  + ++D
Sbjct: 278 SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  117 bits (296), Expect = 1e-31
 Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 11/217 (5%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE 112
             T +GH G V       +    A+GS D T K+WD  TG+   + + H   VR  A S 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172
           D   L +G  +K +R++DL       R +   +  + +VA+   D  ILSS +    +++
Sbjct: 62  DGTYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKV 119

Query: 173 WDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVK---GYNMP 227
           WD  +GK + TL      V S   S DG ++ ++    ++K WD      V    G+   
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Query: 228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG 264
            N  S +  P  G   ++   D  + ++D  TG+ +G
Sbjct: 180 VN--SVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLG 213

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (286), Expect = 4e-30
 Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 8/205 (3%)

Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
            GH+  V  + +SP   DG  L S+S+D +  + + ETG  + T  GH   V S     +
Sbjct: 90  TGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146

Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
             F AS S D T KLWD  TG    +   H   V + AFS D   LL+   +  ++++DL
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206

Query: 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPV 190
                    +      + +VA+   D  +L+S ++ G +R+WD R+G+ VQTL    + V
Sbjct: 207 -STGKCLGTLRGHENGVNSVAF-SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264

Query: 191 TSAEVSRDGRY-ITTADGSSVKFWD 214
           TS   S DG+   + +   +++ WD
Sbjct: 265 TSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 99.3 bits (248), Expect = 1e-24
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70
              GH+  V  + +SP   DG F+ S+S+D +  L +  TG  + T  GH G V S    
Sbjct: 130 TLRGHTDWVNSVAFSP---DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIF 129
            +     S S+D T KLWD  TG    +   H++ V + AFS D +LL +G  +  +R++
Sbjct: 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           DL R     + +   + S+ ++AW   D   L+S +  G +R+WD
Sbjct: 247 DL-RTGECVQTLSGHTNSVTSLAW-SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 93.6 bits (231), Expect = 7e-22
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 8/242 (3%)

Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-GTFEGHKGAVWSCCLDA 71
            GH+ PV  L +SP    G  + S S D +  L +  TG  +  T  GH  +V S     
Sbjct: 195 AGHTDPVSSLAFSPD--GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD 252

Query: 72  NALFSASGSADFTAKLWDALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF 129
            +L  ASGS+D T +LWD  +     +    H   V + AFS D  LL +G  +  +R++
Sbjct: 253 GSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 130 DLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           DL          +    G + ++++      ++S  +D G +RLWD R+GK ++TLE  S
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371

Query: 189 PVTSAEVSRDGRYITTADGS-SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
            V S   S DGR +++     +V+ WD +   L++  +   +  ++      G    +G 
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431

Query: 248 ED 249
            D
Sbjct: 432 SD 433

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.4 bits (202), Expect = 6e-18
 Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 17/262 (6%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEG-HKGAVWSCCL-- 69
           GH   +  + +SP   DG  L+S S D +  L + + G+  I + EG H  +V    L  
Sbjct: 63  GHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 70  -DANALFSASGSADFTAKLWDALTGDE-KHSFE-HKHIVRACAFSEDTHLLLTGGFEK-I 125
            D N++  AS S D T KLWD  T  +   + E H   V + AFS D  LL +G      
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-TL 184
           ++++DL R   P   +   +  + ++A+      +++S +  G +RLWD  +GK+++ TL
Sbjct: 180 IKLWDL-RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238

Query: 185 ETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHFG--LVKGYNMPCNTESASLEPKLGN 241
              S    +  S DG  + +     +++ WD       L        +  S +  P  G 
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GK 297

Query: 242 IFIAGGEDMWVHVFDFHTGEQI 263
           +  +G  D  V ++D  TG+ +
Sbjct: 298 LLASGSSDGTVRLWDLETGKLL 319

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.0 bits (193), Expect = 1e-16
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 9/216 (4%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK---HSFEHKHIVRACAF-- 110
              GH+ ++ S     +     SGS+D T KLWD   G++        H   V   A   
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 111 -SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
              ++ LL +   +  ++++DL+ P    R +   S S+ ++A+    + + S  +  G 
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT--ADGSSVKFWDANHFGLVKGYNM 226
           ++LWD R+GK + TL     PV+S   S DG  +    +   +++ WD +   L++    
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262
             +    S     G++  +G  D  + ++D  +   
Sbjct: 240 GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSC-CLD 70
           GHS  V+ + +SP   DG  L S S D +  L + ETG  +   T +GH+G V S     
Sbjct: 282 GHSSSVLSVAFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
             +L  + GS D T +LWD  TG    + E    V + +FS D  ++ +G  +  +R++D
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD 398

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190
           L+      R +   +  + ++ +   D   L+S +    +RLWD ++     +      V
Sbjct: 399 LSTGS-LLRNLDGHTSRVTSLDF-SPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKV 456

Query: 191 T 191
            
Sbjct: 457 L 457

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
          + T +GH G V S     +    ASGS D T ++WD
Sbjct: 4  LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 50 TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
          +G+ + T +GH G V S     +  + ASGS D T KLWD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 60  HKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT-HLL 117
           H+  VWS     A+    ASGS D + KLW    G    + + K  +    F  ++   L
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSL 633

Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             G  +  +  +DL  P  P   +   S ++  V ++ S  T++SS TD+  ++LWD
Sbjct: 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS-STLVSSSTDN-TLKLWD 688

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.8
KOG2096	420	consensus WD40 repeat protein [General function pr	99.79
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
KOG2055	514	consensus WD40 repeat protein [General function pr	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
KOG1334	559	consensus WD40 repeat protein [General function pr	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.62
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.62
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.62
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
KOG0649	325	consensus WD40 repeat protein [General function pr	99.6
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
KOG1188	376	consensus WD40 repeat protein [General function pr	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.56
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.56
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
KOG2321	703	consensus WD40 repeat protein [General function pr	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.53
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.5
KOG4227	609	consensus WD40 repeat protein [General function pr	99.49
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.49
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.44
KOG1334	559	consensus WD40 repeat protein [General function pr	99.44
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.42
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.42
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.42
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
PRK00178	430	tolB translocation protein TolB; Provisional	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
KOG2139	445	consensus WD40 repeat protein [General function pr	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.33
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.32
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.28
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.28
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.27
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.25
KOG4547	541	consensus WD40 repeat-containing protein [General	99.22
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.2
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.16
KOG4547	541	consensus WD40 repeat-containing protein [General	99.15
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.15
KOG2315	566	consensus Predicted translation initiation factor	99.14
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.14
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.13
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.13
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.1
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.07
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.06
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.06
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.04
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.02
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.0
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.97
KOG2695	425	consensus WD40 repeat protein [General function pr	98.96
KOG2695	425	consensus WD40 repeat protein [General function pr	98.94
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.9
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.87
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.87
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.85
COG4946	668	Uncharacterized protein related to the periplasmic	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.81
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.79
KOG2315	566	consensus Predicted translation initiation factor	98.77
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.77
KOG2314	698	consensus Translation initiation factor 3, subunit	98.76
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.75
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.75
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.71
KOG2314	698	consensus Translation initiation factor 3, subunit	98.71
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.7
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.67
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.67
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.66
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.65
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.63
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.54
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.53
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.52
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.45
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.45
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.4
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.38
PRK02888	635	nitrous-oxide reductase; Validated	98.36
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.36
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.36
PRK02888	635	nitrous-oxide reductase; Validated	98.35
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.34
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.32
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.3
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.26
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.26
KOG3621	726	consensus WD40 repeat-containing protein [General	98.21
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.18
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.17
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.12
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.11
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.07
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.02
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.96
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.9
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.87
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.83
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.82
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.8
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.62
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.5
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.48
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.48
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.47
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.47
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.46
KOG3621	726	consensus WD40 repeat-containing protein [General	97.45
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.42
COG3391	381	Uncharacterized conserved protein [Function unknow	97.41
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.4
PHA02713	557	hypothetical protein; Provisional	97.39
COG3391	381	Uncharacterized conserved protein [Function unknow	97.39
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.37
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.34
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.34
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.3
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.28
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.26
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.25
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.14
KOG2395	644	consensus Protein involved in vacuole import and d	97.08
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.06
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.05
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.96
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.9
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.88
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.85
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.66
PRK13616	591	lipoprotein LpqB; Provisional	96.57
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.48
KOG2395	644	consensus Protein involved in vacuole import and d	96.48
PRK13616	591	lipoprotein LpqB; Provisional	96.47
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.4
PHA02713	557	hypothetical protein; Provisional	96.4
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.21
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.13
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.04
KOG2444	238	consensus WD40 repeat protein [General function pr	96.02
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.97
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.93
COG5167	776	VID27 Protein involved in vacuole import and degra	95.88
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.8
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.76
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.73
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.71
KOG2444	238	consensus WD40 repeat protein [General function pr	95.66
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.65
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.6
PHA03098	534	kelch-like protein; Provisional	95.59
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.47
PHA02790	480	Kelch-like protein; Provisional	95.46
PHA03098	534	kelch-like protein; Provisional	95.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.22
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.09
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.99
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.92
PHA02790	480	Kelch-like protein; Provisional	94.83
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.52
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.12
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	94.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.94
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.62
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.12
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.88
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.82
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.65
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.5
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.38
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.94
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.89
PRK10115	686	protease 2; Provisional	91.77
PRK13684	334	Ycf48-like protein; Provisional	91.61
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.59
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.39
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.12
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	90.93
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.84
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.09
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.0
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.7
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.41
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.04
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.6
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.55
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	88.41
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.26
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.39
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	87.26
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.83
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.72
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.58
PRK10115	686	protease 2; Provisional	86.54
COG4590	733	ABC-type uncharacterized transport system, permeas	86.21
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.73
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	85.47
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	84.93
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.97
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	83.47
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	82.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	82.15
COG5167	776	VID27 Protein involved in vacuole import and degra	81.9
KOG2247	615	consensus WD40 repeat-containing protein [General	80.68
PF12768	281	Rax2: Cortical protein marker for cell polarity	80.42
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	80.08

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-52  Score=316.09  Aligned_cols=259  Identities=68%  Similarity=1.139  Sum_probs=248.8

Q ss_pred             ceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      .+...|++|+||++||..|+|+|++|+|-+|++++.|+...+.+.++|.++.+|+||++.|++.+...+-...+|++.|-
T Consensus         2 ~~~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf   81 (334)
T KOG0278|consen    2 AMRQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF   81 (334)
T ss_pred             CcccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence            57788999999999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      +.|+||..+|..+..++|++.|..++|+.+.++|++|+.++.+|+||++.++.+..++..|.+.|..+.|+..+..+|.+
T Consensus        82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            99999999999999999999999999999999999999999999999999999899999999999999999988877765


Q ss_pred             eeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEE
Q 024676          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (264)
                       .+|++||+||.++++.++.++.+.+|+++.++++|++++.+.++.|.+||..+++.++.|.++++..++++.|+ ...|
T Consensus       162 -add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~-k~~f  239 (334)
T KOG0278|consen  162 -ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK-KEFF  239 (334)
T ss_pred             -ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCC-CceE
Confidence             78899999999999999999999999999999999999999999999999999999999999999999999996 6899


Q ss_pred             EEecCCCeEEEEEcCcceeeC
Q 024676          244 IAGGEDMWVHVFDFHTGEQIG  264 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~~i~  264 (264)
                      ++|++|.+++.||..||++|+
T Consensus       240 VaGged~~~~kfDy~TgeEi~  260 (334)
T KOG0278|consen  240 VAGGEDFKVYKFDYNTGEEIG  260 (334)
T ss_pred             EecCcceEEEEEeccCCceee
Confidence            999999999999999999985

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-43  Score=284.91  Aligned_cols=246  Identities=22%  Similarity=0.301  Sum_probs=214.9

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      ....++.||+..|.++.|+|.. ++..||||+.||++++|+.++-+.+++|.||...|..++|+|+|++|+|+|.|.+.|
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR  286 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR  286 (459)
T ss_pred             ceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence            3445678999999999999964 466889999999999999998899999999999999999999999999999999999


Q ss_pred             EEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        87 iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      +||+.++..+... .|...|.+++|+|+|.+++||+.|..-++||++++..+.. +..|..+|..++|+|+ ++.+++|+
T Consensus       287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~-L~gH~k~I~~V~fsPN-Gy~lATgs  364 (459)
T KOG0272|consen  287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF-LAGHIKEILSVAFSPN-GYHLATGS  364 (459)
T ss_pred             hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE-ecccccceeeEeECCC-ceEEeecC
Confidence            9999998654433 4889999999999999999999999999999999886544 4458899999999985 56788899


Q ss_pred             CCCeEEEEECCCCceeEEecCC-CCEEEEEEcC-CCcEEEEe-CCCcEEEEECCCceeeeEEecCCCC-ceeeEcCCCCC
Q 024676          166 DSGGVRLWDARSGKIVQTLETK-SPVTSAEVSR-DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGN  241 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~-~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~  241 (264)
                      .|+++||||+|..+++.++..+ +.|..+.|+| .|.||+++ -|++++||..+++.+++.+..+... .+....+ +++
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~  443 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQ  443 (459)
T ss_pred             CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCc
Confidence            9999999999999999988765 4589999999 56787765 4999999999999999999887654 4555555 699


Q ss_pred             EEEEecCCCeEEEEE
Q 024676          242 IFIAGGEDMWVHVFD  256 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd  256 (264)
                      +++++|-|+++++|.
T Consensus       444 ~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  444 AIATSSFDRTIKLWR  458 (459)
T ss_pred             eEEEeccCceeeecc
Confidence            999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2e-41  Score=259.03  Aligned_cols=251  Identities=27%  Similarity=0.366  Sum_probs=215.0

Q ss_pred             CcceeecceE-eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676            2 DKRKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (264)
Q Consensus         2 ~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s   80 (264)
                      ||-++.+|.. +.||++.|..+..++   ||++.+++|.|+++|+||+.+++..+.|.||...|.+++|++|...++|||
T Consensus        48 dd~~~G~~~r~~~GHsH~v~dv~~s~---dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS  124 (315)
T KOG0279|consen   48 DDIKYGVPVRRLTGHSHFVSDVVLSS---DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS  124 (315)
T ss_pred             CccccCceeeeeeccceEecceEEcc---CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC
Confidence            4555666654 469999999998885   999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcEEEEeec--CCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC
Q 024676           81 ADFTAKLWDALTGDEKHSFEH--KHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  156 (264)
                      +|+++++||+.........++  .+-|.+++|+|+  +.+++++++|+++|+||++.-+..... ..|++.++.++.+|+
T Consensus       125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSPD  203 (315)
T ss_pred             CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-ccccccEEEEEECCC
Confidence            999999999887654444443  567999999997  799999999999999999876654444 457889999998875


Q ss_pred             CCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC---------
Q 024676          157 DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP---------  227 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~---------  227 (264)
                       +.++++++.||++-+||++.++.++.+.+...|++++|+|+...|+.+.+..|+|||+....++..+...         
T Consensus       204 -GslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~  282 (315)
T KOG0279|consen  204 -GSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAG  282 (315)
T ss_pred             -CCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccC
Confidence             5688889999999999999999999999999999999999988888888888999999998887766531         


Q ss_pred             -CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          228 -CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                       ..+.+.++++ +|..|.+|=.|+.|++|.+.
T Consensus       283 ~~~clslaws~-dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  283 DPICLSLAWSA-DGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             CcEEEEEEEcC-CCcEEEeeecCCcEEEEEee
Confidence             1223556666 58899999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-42  Score=279.16  Aligned_cols=246  Identities=22%  Similarity=0.295  Sum_probs=215.6

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC--CcEEEEecCCCeEEEEeC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDA   90 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v~iwd~   90 (264)
                      .|-++||..+.|++   |+++|||||.+|.+++|+..+...+.+|.||.+.|.++.|+|.  +..+|||+.||++|+|++
T Consensus       172 ~gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  172 VGDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL  248 (459)
T ss_pred             ccCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence            48899999999995   8999999999999999999999999999999999999999997  568999999999999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      .+..++..++ |...|..++|+|+|++|+|++.|.+.++||+++......+- +|...+.+++|.+ ++.++++|+-|..
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~-DGSL~~tGGlD~~  326 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQP-DGSLAATGGLDSL  326 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecC-CCceeeccCccch
Confidence            9988777775 77889999999999999999999999999999876655554 4667899999876 4568888899999


Q ss_pred             EEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCce-eeEcCCCCCEEEEe
Q 024676          170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTES-ASLEPKLGNIFIAG  246 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  246 (264)
                      =+|||+|+|+++-.+.. ..+|.++.|+|||..++++ .|++++|||++....+.++..+.+..+ ..+.|..|.+|+|+
T Consensus       327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA  406 (459)
T ss_pred             hheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence            99999999999887865 4679999999999888764 589999999999988777776666544 56666679999999


Q ss_pred             cCCCeEEEEEcCcceee
Q 024676          247 GEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       247 s~d~~v~vwd~~~g~~i  263 (264)
                      |.|+++++|...+++++
T Consensus       407 syD~t~kiWs~~~~~~~  423 (459)
T KOG0272|consen  407 SYDNTVKIWSTRTWSPL  423 (459)
T ss_pred             ccCcceeeecCCCcccc
Confidence            99999999998877654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-42  Score=272.48  Aligned_cols=242  Identities=26%  Similarity=0.420  Sum_probs=204.5

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      .||.++|.++.|+|   +|.+||+||.|.++|+||..+.....+.+||+..|.+++|+||++.+|||+.||+|++||..+
T Consensus       112 ~GH~e~Vl~~~fsp---~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSP---TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             CCCCCcEEEEEecC---CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence            69999999999997   899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcEEEE-e-ecCCeEEEEEECC-----CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           93 GDEKHS-F-EHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        93 ~~~~~~-~-~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      ++++-. + .|.+.|++++|.|     ..++|++++.|+.++|||+..+.. ...+..|+.+++|+.|-  ++.++.+++
T Consensus       189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwG--G~gliySgS  265 (480)
T KOG0271|consen  189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWG--GEGLIYSGS  265 (480)
T ss_pred             CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEc--CCceEEecC
Confidence            875433 3 4899999999977     458899999999999999976543 34556789999999995  455888999


Q ss_pred             CCCeEEEEECCCCceeEEecC-----------------------------------------------------------
Q 024676          166 DSGGVRLWDARSGKIVQTLET-----------------------------------------------------------  186 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~-----------------------------------------------------------  186 (264)
                      .|++||+|+...|++.+.+..                                                           
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            999999998755332211110                                                           


Q ss_pred             ---------------------CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEE
Q 024676          187 ---------------------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF  243 (264)
Q Consensus       187 ---------------------~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  243 (264)
                                           ...|+.+.||||++++++++ |..|++||.++++-+.+|..+.. ...+++.. +.++|
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLl  424 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLL  424 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEE
Confidence                                 12478899999999998765 99999999999999988886544 34566766 58999


Q ss_pred             EEecCCCeEEEEEcCcce
Q 024676          244 IAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~  261 (264)
                      ++||.|.++++||+++.+
T Consensus       425 VS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             EEcCCCceEEEEEeeeee
Confidence            999999999999998654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-40  Score=250.84  Aligned_cols=248  Identities=21%  Similarity=0.313  Sum_probs=212.3

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-----CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-----~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      ++.||++.|.+++-.+.  +-+.|+++++|.++.+|++..     |..++.|.||+..|..+..++|+.+++|+|.|+++
T Consensus        10 tl~gh~d~Vt~la~~~~--~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIK--NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eecCCCceEEEEEeecC--CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            46799999999998875  346899999999999998754     55688999999999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC-CCCeEEEEEecCC-CeEEE
Q 024676           86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SGSIRTVAWLHSD-QTILS  162 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~~~~~  162 (264)
                      |+||+.+++..+.+. |..-|.+++++|+++.+++|+.|++|++|+.... ......... ...|.|+.|.|.. ..+++
T Consensus        88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            999999998777765 8999999999999999999999999999998543 333333332 7789999999875 56788


Q ss_pred             EeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCC
Q 024676          163 SCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (264)
Q Consensus       163 ~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (264)
                      +++.|++||+||+++.+....+.. ...++.+++||||.+++++ .|+.+.+||++.++.+..+.......+++|.|  .
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp--n  244 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP--N  244 (315)
T ss_pred             EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC--C
Confidence            889999999999999988777654 4569999999999998775 48999999999999988887777778888888  5


Q ss_pred             CEEEEecCCCeEEEEEcCcceee
Q 024676          241 NIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       241 ~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++.+++..+..|+|||+.++..+
T Consensus       245 rywL~~at~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  245 RYWLCAATATSIKIWDLESKAVV  267 (315)
T ss_pred             ceeEeeccCCceEEEeccchhhh
Confidence            77788888888999999887654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-38  Score=238.36  Aligned_cols=246  Identities=23%  Similarity=0.360  Sum_probs=211.1

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      .++..|.++|.+++|+   -||+|.++++.|+++++|++..|.++++++||...|..++.+.|+..+++|+.|+.|.+||
T Consensus        11 ~~l~~~qgaV~avryN---~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYN---VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eeecccccceEEEEEc---cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            3457899999999999   4999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC-eEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      +++|+..+.+. |...|+.+.|+.+...+++|+.|..+++||-++....+ +.+......+.++...   ++.+++++-|
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~D  164 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVD  164 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccC
Confidence            99999999986 88899999999999999999999999999988765443 3444556778777754   4578888999


Q ss_pred             CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCC---ceeeEcCCCCCEE
Q 024676          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNT---ESASLEPKLGNIF  243 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  243 (264)
                      |++|.||+|.|+....+-. .||+++.++++++.. +++-++++++.|-.+++.++.|..+.+.   ...++.. ....+
T Consensus       165 GtvRtydiR~G~l~sDy~g-~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV  242 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLSSDYFG-HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHV  242 (307)
T ss_pred             CcEEEEEeecceeehhhcC-CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeE
Confidence            9999999999987655444 599999999999875 5566899999999999999888765443   2334443 36789


Q ss_pred             EEecCCCeEEEEEcCcceee
Q 024676          244 IAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++||+||.|++||+..+.++
T Consensus       243 ~sgSEDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  243 FSGSEDGKVYFWDLVDETQI  262 (307)
T ss_pred             EeccCCceEEEEEeccceee
Confidence            99999999999999877654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-37  Score=245.53  Aligned_cols=242  Identities=24%  Similarity=0.389  Sum_probs=204.9

Q ss_pred             eeccCCCeeeeEeccC--CCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           12 CHGHSRPVVDLFYSPI--TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~--~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      +.||+..|.+|+|.|.  .|.+++||++|.||+++|||...++.+..+.||+.+|.|++|..++ +++|||.|++||+|+
T Consensus       196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~  274 (480)
T KOG0271|consen  196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWR  274 (480)
T ss_pred             ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEE
Confidence            4799999999999994  4778899999999999999999999999999999999999998766 679999999999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEEC-----------CCC-------------------------CEEEEeeCCCcEEEeeCC
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFS-----------EDT-------------------------HLLLTGGFEKILRIFDLN  132 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~-----------~~~-------------------------~~l~s~~~d~~i~~~d~~  132 (264)
                      ...|...+.+. |.+-|+.++.+           |.+                         ..|++|+.|.++.+|+-.
T Consensus       275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~  354 (480)
T KOG0271|consen  275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF  354 (480)
T ss_pred             ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence            99988777664 77777777665           333                         349999999999999976


Q ss_pred             CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeC-CCcE
Q 024676          133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSV  210 (264)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~~~i  210 (264)
                      ....+......|+..++.+.|+|++. ++++++-|..||+||-++|+.+.++.. -.+|+.++|+.|.+++++++ |.++
T Consensus       355 ~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL  433 (480)
T KOG0271|consen  355 KSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL  433 (480)
T ss_pred             ccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence            55544555567888999999998655 677888889999999999999999974 46799999999999987754 8999


Q ss_pred             EEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          211 KFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       211 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      ++||+++.+....+..+. ......+.| +|..+++|+.|+.+++|.
T Consensus       434 Kvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  434 KVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence            999999988766665433 344667777 588999999999999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-37  Score=241.85  Aligned_cols=242  Identities=23%  Similarity=0.347  Sum_probs=212.2

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      ++||++.|..|+|+.   .|++||++|.|-.+.+||..+ .+.++.+.||+..|.+++|-|.+.+++|+++|.+||+|++
T Consensus       146 LrGHt~sv~di~~~a---~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~  222 (406)
T KOG0295|consen  146 LRGHTDSVFDISFDA---SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC  222 (406)
T ss_pred             hhccccceeEEEEec---CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence            479999999999995   899999999999999999876 4667788999999999999999999999999999999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC-------------
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-------------  156 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-------------  156 (264)
                      .++.++.++. |..-|..+..+.++.++++|+.|.++++|-+.+.+.... ...|+.++.+++|-|.             
T Consensus       223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-lR~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-LREHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             ccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-hhccccceEEEEecccccCcchhhccCCC
Confidence            9999998885 777899999999999999999999999999987654433 3356778888888763             


Q ss_pred             -CCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCcee
Q 024676          157 -DQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESA  233 (264)
Q Consensus       157 -~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  233 (264)
                       +..++.+++.|++||+||+.++.++.++.. .+.|..++|+|.|+||++ ++|+++++||+++..+.++...+.+....
T Consensus       302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~  381 (406)
T KOG0295|consen  302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS  381 (406)
T ss_pred             CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence             235888999999999999999999998865 467999999999999865 67899999999999999999988777665


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEc
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      ..+++...++++||-|-++++|.-
T Consensus       382 lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  382 LDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EecCCCCceEEeccccceeeeeec
Confidence            555556779999999999999963

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2e-35  Score=227.64  Aligned_cols=252  Identities=22%  Similarity=0.358  Sum_probs=214.5

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      +-..++++||...|.++.|++   |.++|+++|.||.++|||.-+...+.-+......|..++|+|.+.++|+|+-|..+
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             eeeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            334478899999999999996   99999999999999999998887777787788999999999999999999999999


Q ss_pred             EEEeCCCC--c----EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           86 KLWDALTG--D----EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        86 ~iwd~~~~--~----~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      -||++.+.  +    ..+.+ .|...+.++.|-+++ .|+|++.|.++-+||++++... +.+..|.+.|.++++.|.+.
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEE-EEecCCcccEEEEecCCCCC
Confidence            99999865  2    22223 388899999998855 5789999999999999988653 55567899999999998777


Q ss_pred             eEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEec---CCCCcee
Q 024676          159 TILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM---PCNTESA  233 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~  233 (264)
                      ..+++|+-|+..+|||+|.+.+++.+..+ ..|+++.|.|+|.-+++ ++|++.|+||+|....+..|..   .+...+.
T Consensus       200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv  279 (343)
T KOG0286|consen  200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV  279 (343)
T ss_pred             CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence            77888888899999999999999999754 56999999999976655 5679999999999888877754   4556677


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .|+. .|++|.+|..|..+.+||.-.||.+
T Consensus       280 ~FS~-SGRlLfagy~d~~c~vWDtlk~e~v  308 (343)
T KOG0286|consen  280 AFSK-SGRLLFAGYDDFTCNVWDTLKGERV  308 (343)
T ss_pred             EEcc-cccEEEeeecCCceeEeeccccceE
Confidence            7765 6999999999999999998877765

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.5e-36  Score=257.86  Aligned_cols=244  Identities=25%  Similarity=0.367  Sum_probs=207.2

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-------------------------------ceEEeee
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------------------------------DWIGTFE   58 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-------------------------------~~~~~~~   58 (264)
                      +.+++--..+.|..|++   |+.+||.|-.|..|++|.+...                               ...+++-
T Consensus       372 YT~~nt~~~v~ca~fSd---dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSD---DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EEEEEcCCcceeEeecC---CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            34466667888999986   8889999999999999987620                               1134577


Q ss_pred             CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC
Q 024676           59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (264)
Q Consensus        59 ~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~  137 (264)
                      ||+++|+.+.|+|+.++|+++|.|++||+|.+.+..++..++ |..||..+.|+|-|.+++|++.|++.++|...... +
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-P  527 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-P  527 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-c
Confidence            999999999999999999999999999999999988777775 88899999999999999999999999999987543 3


Q ss_pred             CeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeC-CCcEEEEEC
Q 024676          138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDA  215 (264)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~  215 (264)
                      .+.+-.|.+.+.|+.|.| +..++++|+.|.+||+||..+|..++.+.+ ..+|.++++||+|++|++++ ++.|++||+
T Consensus       528 lRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl  606 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL  606 (707)
T ss_pred             hhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence            345556788899998765 567888999999999999999999998865 57899999999999998765 799999999


Q ss_pred             CCceeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          216 NHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       216 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      .+++.+..+..+.. ..++.|+. +|..||+||.|.+|++||+..
T Consensus       607 ~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  607 ANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence            99998887766543 45666765 699999999999999999863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-36  Score=259.59  Aligned_cols=212  Identities=27%  Similarity=0.485  Sum_probs=188.2

Q ss_pred             CCcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676            1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (264)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s   80 (264)
                      +|+.+-..-..+-||++||..+.|+|   +.++|+++|.|+++|+|++.+...+-.++||..||+.+.|+|.|.++||+|
T Consensus       436 ~D~~~~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas  512 (707)
T KOG0263|consen  436 LDDDSSGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS  512 (707)
T ss_pred             ccccCCceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC
Confidence            46666666677889999999999996   899999999999999999999998889999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      .|++.++|......+++.+. |-..|.++.|||++.++++||.|+++|+||+.++.. .+.+.+|+++|.+++++|.+ .
T Consensus       513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~G-r  590 (707)
T KOG0263|consen  513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCG-R  590 (707)
T ss_pred             CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCC-c
Confidence            99999999988877777664 788899999999999999999999999999987754 45666799999999999855 5


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCC
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~  217 (264)
                      ++++++.|+.|+|||+.+++.+..+.. .+.+.++.||++|..|+++ .|.+|++||+.+
T Consensus       591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            688889999999999999998877754 4569999999999988765 588999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.2e-35  Score=220.40  Aligned_cols=241  Identities=19%  Similarity=0.331  Sum_probs=192.5

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      -|++|...   ||+++||+|+.- .||+||++++.  .+.+|++|+..|.+|.|..+|+.++|||.||++||||+++..+
T Consensus        42 qVNrLeiT---pdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~  117 (311)
T KOG0315|consen   42 QVNRLEIT---PDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC  117 (311)
T ss_pred             ceeeEEEc---CCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence            46667555   588898887754 68999999875  6899999999999999999999999999999999999999888


Q ss_pred             EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676           96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      .+.+++..+|+.+..+|+..-|++|..++.|++||+.......+......-.+.++...+++ ..++++...|...+|++
T Consensus       118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l  196 (311)
T KOG0315|consen  118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRL  196 (311)
T ss_pred             chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEc
Confidence            99999999999999999999999999999999999986544444444445567777766655 45666677799999999


Q ss_pred             CCCc------eeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCc-eeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676          176 RSGK------IVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAG  246 (264)
Q Consensus       176 ~~~~------~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (264)
                      -+.+      ++..++.+ .-+..+.+|||+++|++ +.|.+++||+..++ ..-...+.+..-.--+.++.+++|+++|
T Consensus       197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence            7644      23344433 45888999999999876 56899999999988 3333333343333333344469999999


Q ss_pred             cCCCeEEEEEcCcceee
Q 024676          247 GEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       247 s~d~~v~vwd~~~g~~i  263 (264)
                      |.|.++|+|++..|+++
T Consensus       277 ssd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  277 SSDHTARLWDLSAGKEV  293 (311)
T ss_pred             CCCCceeecccccCcee
Confidence            99999999999999976

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-35  Score=221.29  Aligned_cols=238  Identities=29%  Similarity=0.562  Sum_probs=203.9

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      +|+.+.||.+|+..|+|+   .+|.+|.+++.|.++.+|-...|+.+.++.||++.|+++..+.+.++++|||.|.++++
T Consensus         2 rpi~l~GHERplTqiKyN---~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    2 RPILLQGHERPLTQIKYN---REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             CccccccCccccceEEec---CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            578889999999999999   49999999999999999999899999999999999999999999999999999999999


Q ss_pred             EeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-----CCcEEEeeCCCCC------CCCeEeccCCCCeEEEEEecC
Q 024676           88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-----EKILRIFDLNRPD------APPREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        88 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~~~d~~~~~------~~~~~~~~~~~~i~~~~~~~~  156 (264)
                      ||+.+|+++..++...+|..+.|++.+++++.+..     .+.|.++|++...      .+...+..+...+..+-|.|.
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            99999999999999999999999999998887654     3558899987322      223344456678888999988


Q ss_pred             CCeEEEEeeCCCeEEEEECCCCceeE-Ee-cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCcee
Q 024676          157 DQTILSSCTDSGGVRLWDARSGKIVQ-TL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESA  233 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  233 (264)
                      ++. +++|.+||.|.+||+++|+.+. .- .+...|+.++++||..++++ +.|.+-++||.++.+++++|...++.+++
T Consensus       159 ~~~-ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a  237 (327)
T KOG0643|consen  159 GET-IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA  237 (327)
T ss_pred             CCE-EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence            776 4567788999999999987653 32 35567999999999987655 55899999999999999999988888889


Q ss_pred             eEcCCCCCEEEEecCC
Q 024676          234 SLEPKLGNIFIAGGED  249 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d  249 (264)
                      +++|.....+..||++
T Consensus       238 aisP~~d~VilgGGqe  253 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQE  253 (327)
T ss_pred             ecccccceEEecCCce
Confidence            9998766666666665

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.1e-35  Score=236.72  Aligned_cols=237  Identities=28%  Similarity=0.461  Sum_probs=204.0

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      ...|++|+|+.   +|..||+|+.||.+|+|+.. |.++.+|..|+++|.++.|+.+|.++++++.|+++.|||..++..
T Consensus       235 nkdVT~L~Wn~---~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNN---DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             cCCcceEEecC---CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence            35799999994   99999999999999999975 677889999999999999999999999999999999999876654


Q ss_pred             EEEe------------------------------------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC
Q 024676           96 KHSF------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (264)
Q Consensus        96 ~~~~------------------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~  133 (264)
                      .+.+                                          .|..+|.++.|+|.+.+|++|+.|+++++|+...
T Consensus       311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            3221                                          1667899999999999999999999999999754


Q ss_pred             CCCCCeEeccCCCCeEEEEEecCC--------CeEEEEeeCCCeEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEEE
Q 024676          134 PDAPPREVGNSSGSIRTVAWLHSD--------QTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITT  204 (264)
Q Consensus       134 ~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~  204 (264)
                      ... ...+..|..+|..+.|+|.+        ...+++++.|++|++||+..+.+++.+ .+..||.+++|+|+|+++++
T Consensus       391 ~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs  469 (524)
T KOG0273|consen  391 SNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS  469 (524)
T ss_pred             Ccc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence            433 33444577788888888754        346778888899999999999999998 67789999999999999988


Q ss_pred             eC-CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          205 AD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       205 ~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ++ |+.|.||+.++++.++.+...+.+...+|... |..+..+-.|+.+++-|+.
T Consensus       470 Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~-G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  470 GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAA-GDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cCCCCeeEeccccchheeEeecCCCeEEEEEEcCC-CCEEEEEecCCCceEEEec
Confidence            76 89999999999999999998888778888875 6888888889999998874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=251.29  Aligned_cols=244  Identities=28%  Similarity=0.432  Sum_probs=203.3

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC-
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-   91 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~-   91 (264)
                      |...|.++.|+|   +|++|++++.|+.+++|+...++  +.+.+.+|...|+.++|+|+++++++++.|+++||||+. 
T Consensus       158 ~~~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  158 ECPSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             ccCceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence            478999999996   99999999999999999997777  777889999999999999999999999999999999994 


Q ss_pred             CCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      .+..+.++ .|...|++++|+|+++++++|+.|++|++||+++++.. ..+..|.+.+.++++.+++. ++++++.|+.|
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~-~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i  312 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV-RKLKGHSDGISGLAFSPDGN-LLVSASYDGTI  312 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE-EeeeccCCceEEEEECCCCC-EEEEcCCCccE
Confidence            44666666 59999999999999999999999999999999986643 45556788999999877655 55566778999


Q ss_pred             EEEECCCCc--eeEEecC--CC-CEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCc-ee--eEcCCCCC
Q 024676          171 RLWDARSGK--IVQTLET--KS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE-SA--SLEPKLGN  241 (264)
Q Consensus       171 ~iwd~~~~~--~~~~~~~--~~-~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~-~~--~~~~~~~~  241 (264)
                      +|||+.+++  ++..+..  .. ++.++.|+|+++++.++ .|+.+++||++....+..+..+.... ++  ......+.
T Consensus       313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (456)
T KOG0266|consen  313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK  392 (456)
T ss_pred             EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence            999999999  4555532  22 68999999999998765 57799999999998888887654421 11  11233689


Q ss_pred             EEEEecCCCeEEEEEcCcceee
Q 024676          242 IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++++|+.|+.|++||..+++++
T Consensus       393 ~i~sg~~d~~v~~~~~~s~~~~  414 (456)
T KOG0266|consen  393 LIYSGSEDGSVYVWDSSSGGIL  414 (456)
T ss_pred             eEEEEeCCceEEEEeCCccchh
Confidence            9999999999999999887654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-35  Score=247.36  Aligned_cols=248  Identities=22%  Similarity=0.276  Sum_probs=219.2

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      +..|+..|.+|.|+|+.|   +++++-..|.+.||+.++..+++.|+--.-||++..|-+....+++||+|..||+++.+
T Consensus         9 ~~~rSdRVKsVd~HPteP---w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEP---WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hhccCCceeeeecCCCCc---eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            345999999999999877   99999999999999999999999998778899999999999999999999999999999


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      +++.+..++ |.+.+++++.||...+++|+|.|.+||+||.+..-...+.+..|...+-+++++|.+..-+++++-|++|
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            999999886 8999999999999999999999999999999866544566677888999999999999999999999999


Q ss_pred             EEEECCCCceeEEecCC-CCEEEEEEcCCC---cEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDG---RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG  246 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~---~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (264)
                      |+|.+.+..+..+++.+ ..|+++.+=+.|   .++++++|.++++||..+..|++++..+.+..+..++.+.=.++++|
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence            99999998888888765 459999998877   45566778999999999999999998877666555444446799999


Q ss_pred             cCCCeEEEEEcCccee
Q 024676          247 GEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       247 s~d~~v~vwd~~~g~~  262 (264)
                      |+||++|+|+..|.+.
T Consensus       246 sEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  246 SEDGTVRIWNSKTYKL  261 (794)
T ss_pred             cCCccEEEecCcceeh
Confidence            9999999999877653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.8e-36  Score=245.07  Aligned_cols=241  Identities=24%  Similarity=0.386  Sum_probs=206.2

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      +.||+..|.++.|.|.  .+.+|++++.|+.|.+|++.. +.++++|.||..+|+.++|++++..+.|+|.|+++|+||+
T Consensus       210 ~~gH~kgvsai~~fp~--~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPK--KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             ccCCccccchhhhccc--eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            3799999999999984  578999999999999999876 7899999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           91 LTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      ++|.++..+.....++++.++|++ +.+++|+.|+.|+.||+++++. .++...|-+.+..+.|.+.+..+ ++.++|+.
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~rF-issSDdks  365 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRRF-ISSSDDKS  365 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCceE-eeeccCcc
Confidence            999999999988999999999988 8999999999999999998874 35556778899999999877654 45678899


Q ss_pred             EEEEECCCCceeEEec--------------------------------C--------------C---CCEEEEEEcCCCc
Q 024676          170 VRLWDARSGKIVQTLE--------------------------------T--------------K---SPVTSAEVSRDGR  200 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~--------------------------------~--------------~---~~v~~~~~s~~~~  200 (264)
                      ++||+.+..-.+..+.                                .              +   ..-..+.|||||.
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence            9999987543221110                                0              0   1235678999999


Q ss_pred             EEEEeC-CCcEEEEECCCceeeeEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          201 YITTAD-GSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       201 ~l~~~~-~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      +|++++ +|.+.+||-++-+.+..++.+ ..+....++|-....+||+|-||.|++||
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            998876 689999999998888888876 44566788888888999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=223.81  Aligned_cols=244  Identities=23%  Similarity=0.359  Sum_probs=198.7

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      -.+.||+++|+.+.|+|   +|.+||+|+.|..|.+|++.. -+....++||+++|..+.|..|+..++|+|.|++++.|
T Consensus        41 m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             hhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            34579999999999997   899999999999999999653 34566788999999999999999999999999999999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      |+++|+..+..+ |...|+.+.-.. ...++.+++.|+++|+||+++.+.....  ..+-.++++.|...... +.++.-
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqltAv~f~d~s~q-v~sggI  194 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLTAVGFKDTSDQ-VISGGI  194 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc--ccceeEEEEEecccccc-eeeccc
Confidence            999999887765 788888887433 3466778899999999999865543222  23456788888865554 555667


Q ss_pred             CCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCc----eeeeEEecC-----CCCceeeE
Q 024676          167 SGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF----GLVKGYNMP-----CNTESASL  235 (264)
Q Consensus       167 d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~----~~~~~~~~~-----~~~~~~~~  235 (264)
                      |+.|++||++.+..++.+.++ .+|..+..+|+|.++.+ +-|.++++||++-+    .+++.|..+     .+....++
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw  274 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW  274 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence            799999999999999988765 57999999999998766 45899999999854    457666543     23446677


Q ss_pred             cCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          236 EPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       236 ~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      .|+ ++.+.+|+.|+.+++||...-
T Consensus       275 sp~-~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  275 SPN-GTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             cCC-CCccccccccceEEEeecccc
Confidence            875 888999999999999998653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-35  Score=252.44  Aligned_cols=237  Identities=21%  Similarity=0.340  Sum_probs=196.1

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC------------------------------------C------
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------------------------------G------   51 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~------------------------------------~------   51 (264)
                      +|++.|+++.|++   ||+|||+|+.|+.|+||.+..                                    .      
T Consensus       265 ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             ccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            7999999999996   999999999999999996532                                    0      


Q ss_pred             ------------------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECC-
Q 024676           52 ------------------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-  112 (264)
Q Consensus        52 ------------------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-  112 (264)
                                        +++..|.||.+.|..+.|+.++ +|+|+|.|+|||+|++....++..|.|.+.|++++|+| 
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence                              0123568999999999999654 78899999999999999999999999999999999999 


Q ss_pred             CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC------
Q 024676          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------  186 (264)
Q Consensus       113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~------  186 (264)
                      +++++++|+.|+++|+|++...+.  ........-|++++|.|+|+..++ |+.+|.+++|+.+..+.+..+..      
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~V--v~W~Dl~~lITAvcy~PdGk~avI-Gt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKV--VDWNDLRDLITAVCYSPDGKGAVI-GTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             CCCcEeecccccceEEeecCcCee--EeehhhhhhheeEEeccCCceEEE-EEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            889999999999999999864332  233344578999999998776555 56669999999998776543321      


Q ss_pred             ---CCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          187 ---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       187 ---~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                         +..|+.+++.|..  ++|+++.|..|||+|++...++..|+..   .....+.|.. +|+++++||+|..||+|+..
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence               2369999999865  4888999999999999888887777643   3345677887 69999999999999999963

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-35  Score=236.19  Aligned_cols=249  Identities=21%  Similarity=0.302  Sum_probs=208.9

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      .++..|+.+|+.+.|+|   +|+|||++|.|.++.||.+...   +...++.||..+|..+.|+||..++++++.|..++
T Consensus       218 qil~~htdEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hhHhhCCCcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            34578999999999996   9999999999999999976543   35788999999999999999999999999999999


Q ss_pred             EEeCCCCcEEEEeecC--CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           87 LWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        87 iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      +||+.+|.....+++.  ..+.+++|.|++..+++|+.|+.|..||++.... ..-.+.....+..++..+++.++++.+
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe
Confidence            9999999998888866  6789999999999999999999999999975432 122222335688999999888888776


Q ss_pred             eCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC---CceeeEcCCCC
Q 024676          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKLG  240 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~  240 (264)
                      . |..|++++.++......+..+.++.++..|.|++++.. -.+..+++||++....++.|..+..   ....+|..-..
T Consensus       374 ~-d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~  452 (519)
T KOG0293|consen  374 V-DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND  452 (519)
T ss_pred             c-ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence            5 58999999998877767777889999999999998655 5678999999998888888865432   23445554445


Q ss_pred             CEEEEecCCCeEEEEEcCcceee
Q 024676          241 NIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       241 ~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .++++||+|+.||||+..+|+.+
T Consensus       453 ~fiaSGSED~kvyIWhr~sgkll  475 (519)
T KOG0293|consen  453 KFIASGSEDSKVYIWHRISGKLL  475 (519)
T ss_pred             ceEEecCCCceEEEEEccCCcee
Confidence            78999999999999999999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.5e-34  Score=228.38  Aligned_cols=244  Identities=20%  Similarity=0.326  Sum_probs=208.9

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      +..||.+=|.+|++.|   ...++++||+|+++.|||+.+|++..++.||...|+.+++++...|+.+++.|+.||-||+
T Consensus       146 Vi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            3479999999999997   6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        91 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      +..+.++.| .|-+.|.++..+|....|++|+.|.++|+||+++... ...+..|...+..+.+.+-++. +++|+.|++
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dpq-vit~S~D~t  300 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDPQ-VITGSHDST  300 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCCc-eEEecCCce
Confidence            999887766 4788999999999999999999999999999987543 3455668889999888776665 557788899


Q ss_pred             EEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEEec
Q 024676          170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGG  247 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs  247 (264)
                      |++||++.|+.+..+.+ +..+.+++.+|....++++....|+-|++..++.+..+..+.. .++...  +...++++|+
T Consensus       301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~--nsD~v~~~G~  378 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSV--NSDGVLVSGG  378 (460)
T ss_pred             EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeee--ccCceEEEcC
Confidence            99999999998777754 4569999999998888888777999999999887766544332 223333  3467899999


Q ss_pred             CCCeEEEEEcCcce
Q 024676          248 EDMWVHVFDFHTGE  261 (264)
Q Consensus       248 ~d~~v~vwd~~~g~  261 (264)
                      .++.+..||.++|.
T Consensus       379 dng~~~fwdwksg~  392 (460)
T KOG0285|consen  379 DNGSIMFWDWKSGH  392 (460)
T ss_pred             CceEEEEEecCcCc
Confidence            99999999998874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=246.52  Aligned_cols=239  Identities=24%  Similarity=0.388  Sum_probs=198.0

Q ss_pred             EeeccCCCeeeeE-eccCCCCCeEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCe
Q 024676           11 VCHGHSRPVVDLF-YSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFT   84 (264)
Q Consensus        11 ~~~~h~~~v~~~~-~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~   84 (264)
                      +.+||++.|..+. |+    +|.+|+|||+|.++++|-++.+    ..++...||++.|.+++++..+ .+|+++|.|++
T Consensus       360 ii~GH~e~vlSL~~~~----~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t  435 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWS----SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT  435 (775)
T ss_pred             EEeCchhheeeeeecc----cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce
Confidence            6689999999998 43    6789999999999999966433    2456778999999999997654 68999999999


Q ss_pred             EEEEeCCCCcEE---EE-------eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe
Q 024676           85 AKLWDALTGDEK---HS-------FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (264)
Q Consensus        85 v~iwd~~~~~~~---~~-------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~  154 (264)
                      +|+|++...+..   ..       ..|.+.|++++++|++++++|||+|++.++|+++..+. ...+.+|+..++++.|+
T Consensus       436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l-~~vLsGH~RGvw~V~Fs  514 (775)
T KOG0319|consen  436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL-LGVLSGHTRGVWCVSFS  514 (775)
T ss_pred             EEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE-EEEeeCCccceEEEEec
Confidence            999998652211   11       13888999999999999999999999999999984433 34556788899999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCCc-
Q 024676          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTE-  231 (264)
Q Consensus       155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-  231 (264)
                      +.++ ++++|+.|.+||||.+.++.|+.++++ .+.|..+.|-.+++.| +++.||-|++|++++.+|+.++..+.... 
T Consensus       515 ~~dq-~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW  593 (775)
T KOG0319|consen  515 KNDQ-LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW  593 (775)
T ss_pred             cccc-eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence            8654 788899999999999999999999985 5678888998888655 55779999999999999999998876644 


Q ss_pred             eeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          232 SASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      .+...+ ...+|++||.|+.|.+|.
T Consensus       594 aL~~~~-~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  594 ALSVSP-LLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EEeecC-ccceeEecCCCeEEEEee
Confidence            344444 577999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.6e-33  Score=215.16  Aligned_cols=233  Identities=22%  Similarity=0.346  Sum_probs=201.2

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .=|..++|+|   .|+++|+|+.|+.+.||++.+.      ...+.+.||++-+.++.|-+|+ +++|+|.|.++-+||+
T Consensus        98 ~WVMtCA~sP---Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen   98 SWVMTCAYSP---SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDI  173 (343)
T ss_pred             eeEEEEEECC---CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEc
Confidence            3467889996   8999999999999999999854      2457799999999999998855 6789999999999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      ++++....|. |..-|.++.++| +++.+++|+-|+..++||++.+... +.+..|...|+.+.|+|++.. +++|++|+
T Consensus       174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G~a-fatGSDD~  251 (343)
T KOG0286|consen  174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSGDA-FATGSDDA  251 (343)
T ss_pred             ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee-EeecccccccceEEEccCCCe-eeecCCCc
Confidence            9999888885 888999999999 9999999999999999999988654 455578889999999987654 67889999


Q ss_pred             eEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCc-eeeEcCCCCCEE
Q 024676          169 GVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIF  243 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  243 (264)
                      +.|+||+|..+.+..+++   ..+|++++||..|++|.+ ..|.++.+||.=+++.+..+..+.+.. .+...| +|..|
T Consensus       252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av  330 (343)
T KOG0286|consen  252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAV  330 (343)
T ss_pred             eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEE
Confidence            999999999988877764   467999999999998765 578899999999998888887776644 456666 59999


Q ss_pred             EEecCCCeEEEEE
Q 024676          244 IAGGEDMWVHVFD  256 (264)
Q Consensus       244 ~~gs~d~~v~vwd  256 (264)
                      ++||=|.++|||.
T Consensus       331 ~TgSWDs~lriW~  343 (343)
T KOG0286|consen  331 ATGSWDSTLRIWA  343 (343)
T ss_pred             EecchhHheeecC
Confidence            9999999999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-34  Score=227.98  Aligned_cols=244  Identities=23%  Similarity=0.342  Sum_probs=205.7

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      .||..+|+.+.|+|   +...+++++.|.++++||..+|++.+.++||++.|..++|+..|++++|+|.|-.+++||..+
T Consensus       105 ~g~r~~vt~v~~hp---~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~  181 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHP---SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT  181 (406)
T ss_pred             hccccceeeeeecc---CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence            58999999999997   556889999999999999999999999999999999999999999999999999999999876


Q ss_pred             C-cE-EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           93 G-DE-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        93 ~-~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      . ++ .....|++.|.++++-|.+.++++++.|++|+.|++.++....... .|...+..++.+ .++.++++|+.|.+|
T Consensus       182 ~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~-~DGti~As~s~dqtl  259 (406)
T KOG0295|consen  182 FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVN-QDGTIIASCSNDQTL  259 (406)
T ss_pred             HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEec-CCeeEEEecCCCceE
Confidence            3 22 2334688899999999999999999999999999999887765544 455578888765 467899999999999


Q ss_pred             EEEECCCCceeEEec-CCCCEEEEEEcC--------------C-CcEEEE-eCCCcEEEEECCCceeeeEEecCCCCce-
Q 024676          171 RLWDARSGKIVQTLE-TKSPVTSAEVSR--------------D-GRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTES-  232 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~-~~~~v~~~~~s~--------------~-~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~-  232 (264)
                      ++|-+.++++...+. ++.++.+++|.|              | +.++.+ +.|++|++||+.++.++-++..+.+..+ 
T Consensus       260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~  339 (406)
T KOG0295|consen  260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG  339 (406)
T ss_pred             EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence            999999998766553 445788887754              1 246554 5689999999999999998887766554 


Q ss_pred             eeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ++++| .|+|++++..|+++++||+++++.
T Consensus       340 ~af~p-~Gkyi~ScaDDktlrvwdl~~~~c  368 (406)
T KOG0295|consen  340 VAFSP-GGKYILSCADDKTLRVWDLKNLQC  368 (406)
T ss_pred             eEEcC-CCeEEEEEecCCcEEEEEecccee
Confidence            55555 799999999999999999988753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.2e-33  Score=210.02  Aligned_cols=224  Identities=21%  Similarity=0.265  Sum_probs=187.9

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc--EEEEee-cCCeEEEE
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSFE-HKHIVRAC  108 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~-~~~~v~~~  108 (264)
                      -+||++|.|.+||+|...+|.+.+++.-....|+.+++.||+++||+++ ...|||||+.++.  ++.+++ |.+.|+.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            4899999999999999999999999986678999999999999988766 5579999998875  577776 77899999


Q ss_pred             EECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec--C
Q 024676          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--T  186 (264)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~  186 (264)
                      .|..+++.+++|+.||++|+||++...  ......+..+++++...| ++..|++|..+|.|++||+....+...+.  .
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~  166 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPED  166 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence            999999999999999999999998744  344456778999998766 45567788888999999999988776663  3


Q ss_pred             CCCEEEEEEcCCCcEEEEeCC-CcEEEEECCC------ceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          187 KSPVTSAEVSRDGRYITTADG-SSVKFWDANH------FGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       187 ~~~v~~~~~s~~~~~l~~~~~-~~i~iwd~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ..++.++.+.|||.++++..+ |...+|++-+      .+++..|+.+. ...+..++| ++++|+++|.|.+++||+.+
T Consensus       167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecC
Confidence            467999999999999988765 7999999854      34566676654 355666666 69999999999999999987


Q ss_pred             cc
Q 024676          259 TG  260 (264)
Q Consensus       259 ~g  260 (264)
                      +.
T Consensus       246 ~~  247 (311)
T KOG0315|consen  246 DF  247 (311)
T ss_pred             Cc
Confidence            65

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.4e-35  Score=233.23  Aligned_cols=242  Identities=23%  Similarity=0.365  Sum_probs=203.3

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      +.+|..|.|.|   +|+.|++|+..|...+|+..+-.+-..+..|..+|+++.|++++.+++||+.+|.||+|+.+-...
T Consensus        96 kc~V~~v~WtP---eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen   96 KCPVNVVRWTP---EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV  172 (464)
T ss_pred             ccceeeEEEcC---CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence            45899999996   999999999999999999865444444678999999999999999999999999999999876665


Q ss_pred             EEEeecC-CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676           96 KHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (264)
Q Consensus        96 ~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd  174 (264)
                      +....|. ..|++++|+|++..+++|+.|++|++||....... ..+..|.-.+.+++|.|. +.++++++.|..|++||
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee-~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE-RVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWD  250 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh-heeccCCCCcceeccCCc-cceeEEccCCceeEeec
Confidence            5555544 78999999999999999999999999998655432 233567778999999864 55788889999999999


Q ss_pred             CCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCe
Q 024676          175 ARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMW  251 (264)
Q Consensus       175 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~  251 (264)
                      .++++|+.++. +++-|..+.|+|++.+|++ +.|..++++|++..+.+..|+.+. ...++.++|-...+|++||.|+.
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence            99999998875 4566999999999998876 558899999999888888887543 45677888888899999999999


Q ss_pred             EEEEEcCccee
Q 024676          252 VHVFDFHTGEQ  262 (264)
Q Consensus       252 v~vwd~~~g~~  262 (264)
                      |..|.+..-++
T Consensus       331 vvh~~v~~~~p  341 (464)
T KOG0284|consen  331 VVHWVVGLEEP  341 (464)
T ss_pred             eEEEecccccc
Confidence            99999864443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.9e-32  Score=223.80  Aligned_cols=242  Identities=22%  Similarity=0.384  Sum_probs=193.8

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee---CCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~---~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      +-|++.|++++|+|   ||.++++++.||++.+||..+|+.+..|+   +|++.|++++|+||++.++|+|.|+++||||
T Consensus       187 r~HskFV~~VRysP---DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  187 REHSKFVNCVRYSP---DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             cccccceeeEEECC---CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            47999999999996   99999999999999999999999999998   8999999999999999999999999999999


Q ss_pred             CCCCcEEEEe--------------------------------------------ecCCeEEEEEECCCCCEEEEeeCCCc
Q 024676           90 ALTGDEKHSF--------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKI  125 (264)
Q Consensus        90 ~~~~~~~~~~--------------------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~  125 (264)
                      +.++.+..++                                            .|.+.|+++..+|++++|++|+.||.
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            9776543322                                            16778999999999999999999999


Q ss_pred             EEEeeCCCCCCCCe-------E---eccCC-C------------------------------------------------
Q 024676          126 LRIFDLNRPDAPPR-------E---VGNSS-G------------------------------------------------  146 (264)
Q Consensus       126 i~~~d~~~~~~~~~-------~---~~~~~-~------------------------------------------------  146 (264)
                      |.-|+..++..-..       +   +.... +                                                
T Consensus       344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~  423 (603)
T KOG0318|consen  344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA  423 (603)
T ss_pred             EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence            99999865431100       0   00000 0                                                


Q ss_pred             ---------------------CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce---eEEecCCCCEEEEEEcCCCcEE
Q 024676          147 ---------------------SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYI  202 (264)
Q Consensus       147 ---------------------~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l  202 (264)
                                           ...+++.+| ++..++.+++|+.|+||.+.....   ....++..+++.+++|||+.||
T Consensus       424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl  502 (603)
T KOG0318|consen  424 CISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL  502 (603)
T ss_pred             ecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence                                 023344444 455677788889999999987552   2345677899999999999999


Q ss_pred             EEeC-CCcEEEEECCCcee-eeEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          203 TTAD-GSSVKFWDANHFGL-VKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       203 ~~~~-~~~i~iwd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ++++ .+.+.+||..+++. ...+.++ ....+.+|.|+ ..+|++||.|-.|.||+++.
T Consensus       503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~-n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN-NKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC-ceEEEeccccceEEEEEccC
Confidence            9987 58999999988765 2333433 45678899985 78999999999999999863

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-32  Score=237.37  Aligned_cols=240  Identities=27%  Similarity=0.456  Sum_probs=196.7

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC-CCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~-~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      .+|...|.+++|+|   +|+++++++.|++++|||+ ..+..+++++||...|.+++|+|++.++++|+.|++|||||+.
T Consensus       200 ~~h~~~v~~~~fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             cccccceeeeEECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            68999999999996   9999999999999999999 5558899999999999999999999999999999999999999


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC--CCeEeccCCC-CeEEEEEecCCCeEEEEeeCC
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSG-SIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      +++++..++ |...|..+++++++++|++++.|+.|++||+.++..  .......... .+..+.|+|++.+ ++++..|
T Consensus       277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d  355 (456)
T KOG0266|consen  277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLD  355 (456)
T ss_pred             CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEecCC
Confidence            999888876 888999999999999999999999999999988762  2222222233 6888888876665 4456677


Q ss_pred             CeEEEEECCCCceeEEecCC-C---CEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC-CCC-ceeeEcCCCC
Q 024676          168 GGVRLWDARSGKIVQTLETK-S---PVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP-CNT-ESASLEPKLG  240 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~-~---~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~  240 (264)
                      +.+++||++++++...+..+ .   .+.+...++++.++.+ +.|+.|.+||+.++..+..+..+ ... ....+++ ..
T Consensus       356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~  434 (456)
T KOG0266|consen  356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TE  434 (456)
T ss_pred             CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-Cc
Confidence            99999999999888777543 2   3444455788888766 45899999999998877777665 332 3344454 47


Q ss_pred             CEEEEec--CCCeEEEEEc
Q 024676          241 NIFIAGG--EDMWVHVFDF  257 (264)
Q Consensus       241 ~~~~~gs--~d~~v~vwd~  257 (264)
                      .++++++  .|+.+++|..
T Consensus       435 ~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  435 NLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             CeeeecCcCCCceEEEecC
Confidence            7888888  7999999964

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=227.43  Aligned_cols=232  Identities=19%  Similarity=0.346  Sum_probs=191.6

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      -.++.|+|+-|.    |+ .+++|+.|++|.|||.++...++.+.||++.|.|+.|.  ...++|||.|.+|++||++++
T Consensus       195 e~skgVYClQYD----D~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  195 ENSKGVYCLQYD----DE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             ccCCceEEEEec----ch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence            467789999997    44 57899999999999999999999999999999888875  568899999999999999999


Q ss_pred             cEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        94 ~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      +++.++- |...|..+.|+  +.++++++.|.++.+||+.++....  ..+.+|...++.+.|..   .++++++.|++|
T Consensus       268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTi  342 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTI  342 (499)
T ss_pred             chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceE
Confidence            9888764 67788888886  5689999999999999997664321  22345778888888742   377788888999


Q ss_pred             EEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCC-ceeeEcCCCCCEEEEec
Q 024676          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGG  247 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs  247 (264)
                      |+|+..|++++.++..+ ..|.++++  .+++++++ +|.+|++||+..+.+++.++.++.. .++.|.   .+.+++|+
T Consensus       343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGa  417 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGA  417 (499)
T ss_pred             EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---Cceeeecc
Confidence            99999999999998765 44777666  67887764 5899999999999999888877653 445553   56799999


Q ss_pred             CCCeEEEEEcCccee
Q 024676          248 EDMWVHVFDFHTGEQ  262 (264)
Q Consensus       248 ~d~~v~vwd~~~g~~  262 (264)
                      .||+|++||+.++..
T Consensus       418 YDGkikvWdl~aald  432 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALD  432 (499)
T ss_pred             ccceEEEEecccccC
Confidence            999999999987754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-32  Score=231.55  Aligned_cols=244  Identities=22%  Similarity=0.332  Sum_probs=206.2

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      .||...+.+++|+|   ||+++|||+.|+.|+|||..+|-++.+|..|+..|.++.|+..+..+++.|-||+||.||+..
T Consensus       347 QgH~~~i~~l~YSp---Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  347 QGHSDRITSLAYSP---DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             cccccceeeEEECC---CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            59999999999996   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeecCCeE--EEEEECCCCCEEEEeeCCC-cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           93 GDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        93 ~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      .+..+++..+.++  .+++.+|.|.++.+|+.|. .|++|++.+++.. ..+.+|+++|.+++++|.+. .+++++-|.+
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll-DiLsGHEgPVs~l~f~~~~~-~LaS~SWDkT  501 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL-DILSGHEGPVSGLSFSPDGS-LLASGSWDKT  501 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee-ehhcCCCCcceeeEEccccC-eEEeccccce
Confidence            8888888777765  5788899999999999885 4999999988754 55567999999999988655 7888999999


Q ss_pred             EEEEECCCC-ceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEe----------------c-----
Q 024676          170 VRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYN----------------M-----  226 (264)
Q Consensus       170 v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~----------------~-----  226 (264)
                      ||+||+-.. ..+.+++....+..++|+|+|+-++.+ -|+.|.+||......+..+.                .     
T Consensus       502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~  581 (893)
T KOG0291|consen  502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK  581 (893)
T ss_pred             EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence            999998644 345677777889999999999887654 58999999997544332221                1     


Q ss_pred             CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .....++++++ +|.++++||+...|++|++.++-.
T Consensus       582 ~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vl  616 (893)
T KOG0291|consen  582 GKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVL  616 (893)
T ss_pred             CCceEEEEEcC-CCCEEEecCCcccEEEEECchhhe
Confidence            12234667777 589999999999999999987643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-31  Score=214.80  Aligned_cols=247  Identities=29%  Similarity=0.510  Sum_probs=204.6

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .+.+|..+|.++.|+|   ++++|++++.|+.+++|+..+++....+.+|...+..+.|.+++.++++++.|+.+++||+
T Consensus         4 ~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           4 TLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             HhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            3468999999999996   7889999999999999999988888888999999999999999999999999999999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      .+++....+. |...+.++.|+|+++++++++.|+.+++||+++.+.. .....+...+.++++.+. ..+++++..++.
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~  158 (289)
T cd00200          81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPD-GTFVASSSQDGT  158 (289)
T ss_pred             CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-EEeccCCCcEEEEEEcCc-CCEEEEEcCCCc
Confidence            9876555554 6668999999999888888888999999999855432 333356778999999876 446666666799


Q ss_pred             EEEEECCCCceeEEecCC-CCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEe
Q 024676          170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAG  246 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g  246 (264)
                      |++||+++++.+..+..+ .++.++.++|+++.+ +++.++.+++||++..+.+..+.. ........+.++ +.+++++
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~  237 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASG  237 (289)
T ss_pred             EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEE
Confidence            999999988877777654 479999999999655 455689999999998888877743 334556677775 8888888


Q ss_pred             cCCCeEEEEEcCcceee
Q 024676          247 GEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       247 s~d~~v~vwd~~~g~~i  263 (264)
                      +.|+.+++||+.+++.+
T Consensus       238 ~~~~~i~i~~~~~~~~~  254 (289)
T cd00200         238 SEDGTIRVWDLRTGECV  254 (289)
T ss_pred             cCCCcEEEEEcCCceeE
Confidence            88999999999877653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-31  Score=203.40  Aligned_cols=238  Identities=21%  Similarity=0.401  Sum_probs=190.0

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .+|++.|+.|+|+|   .|++|++||.|.++-||.-.+++  ++.+++||+..|.+++|+++|.+|||+|+|++|-||.+
T Consensus        58 ~~hkrsVRsvAwsp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             ccchheeeeeeecC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            58999999999996   89999999999999999887764  68899999999999999999999999999999999998


Q ss_pred             CCCc---EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC-CCCCC-CeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           91 LTGD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDAP-PREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        91 ~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~-~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ..+.   +...+ +|..-|-.+.|||...+|+++++|++||+|.-. ..... ...+..|...+++++|.+.+ .-+++|
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~  213 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSC  213 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEe
Confidence            7553   33344 488899999999999999999999999999865 33222 24455677789999988765 467889


Q ss_pred             eCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCC------ceeeeEE-ec-CCCCceeeEc
Q 024676          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH------FGLVKGY-NM-PCNTESASLE  236 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~------~~~~~~~-~~-~~~~~~~~~~  236 (264)
                      ++|++|+||-+.+.-   ...++.++..+.+. ++.+.+++.|+.|+++....      ++.+... .. ....++..+.
T Consensus       214 sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~  289 (312)
T KOG0645|consen  214 SDDGTVSIWRLYTDL---SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN  289 (312)
T ss_pred             cCCcceEeeeeccCc---chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence            999999999977332   23455678889998 77666677789999997653      1211111 11 1245677888


Q ss_pred             CCCCCEEEEecCCCeEEEEEcC
Q 024676          237 PKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      |.....|++||.||.|++|.+.
T Consensus       290 p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  290 PKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCCceeecCCCceEEEEEec
Confidence            8667889999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.1e-30  Score=241.15  Aligned_cols=243  Identities=16%  Similarity=0.237  Sum_probs=195.9

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLW   88 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iw   88 (264)
                      .....+...|.++.|+|  +++.+|++++.|++|++||..+++.+..+.+|.+.|++++|+| ++.+++||+.|++|++|
T Consensus       526 ~~~~~~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW  603 (793)
T PLN00181        526 VVELASRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW  603 (793)
T ss_pred             eEEecccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence            33334556889999987  3578999999999999999999998999999999999999996 78899999999999999


Q ss_pred             eCCCCcEEEEeecCCeEEEEEEC-CCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           89 DALTGDEKHSFEHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      |+.++.....+.+...+.++.|+ +++.++++|+.|+.|++||++...........|...+..+.|. ++ ..+++++.|
T Consensus       604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D  681 (793)
T PLN00181        604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTD  681 (793)
T ss_pred             ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECC
Confidence            99999888888777788999995 5789999999999999999987654444555688899999986 33 356677888


Q ss_pred             CeEEEEECCCC------ceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC------------
Q 024676          168 GGVRLWDARSG------KIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP------------  227 (264)
Q Consensus       168 ~~v~iwd~~~~------~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~------------  227 (264)
                      ++|++||++++      +++..+.. ...+..+.++|++.+++++ .|+.|++|+......+..+...            
T Consensus       682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~  761 (793)
T PLN00181        682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD  761 (793)
T ss_pred             CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence            99999999853      45666654 4568899999999888765 5899999998765444333211            


Q ss_pred             --CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          228 --CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       228 --~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                        ......++.+ .+.+|++|+.||.|++|++
T Consensus       762 ~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        762 ASQFISSVCWRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence              1134556776 5889999999999999986

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6.2e-31  Score=227.81  Aligned_cols=226  Identities=20%  Similarity=0.289  Sum_probs=175.8

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-------ceEEeeeCCcCCEEEEEECCCC-cEEEEec
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGS   80 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-------~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s   80 (264)
                      +.++.||+++|.+++|+|.  ++++|++|+.|++|++|++.++       +.+..+.+|...|.+++|+|++ .+|+||+
T Consensus        68 ~~~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs  145 (493)
T PTZ00421         68 PPILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG  145 (493)
T ss_pred             CceEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence            4567899999999999973  6779999999999999998764       3467889999999999999975 6899999


Q ss_pred             CCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-CeEEEEEecCCC
Q 024676           81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQ  158 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~  158 (264)
                      .|++|+|||+.++.....+. |...|.+++|+|++++|++++.|++|++||+++++.... ...|.+ ....+.|.+++.
T Consensus       146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H~~~~~~~~~w~~~~~  224 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCLWAKRKD  224 (493)
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecCCCCcceEEEEcCCCC
Confidence            99999999999988777765 788999999999999999999999999999988764333 333443 344567887777


Q ss_pred             eEEEEe---eCCCeEEEEECCCCc-eeEEec--CCCCEEEEEEcCCCcEEE-Ee-CCCcEEEEECCCceeeeEEecCC--
Q 024676          159 TILSSC---TDSGGVRLWDARSGK-IVQTLE--TKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPC--  228 (264)
Q Consensus       159 ~~~~~~---~~d~~v~iwd~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~--  228 (264)
                      .+++++   +.|+.|++||+++.. ++....  ....+....+++++.+++ ++ .|+.|++||+++++.+.......  
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~  304 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE  304 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence            776655   347999999999764 333332  234566678999997764 44 48899999999988766554432  


Q ss_pred             CCceeeEcC
Q 024676          229 NTESASLEP  237 (264)
Q Consensus       229 ~~~~~~~~~  237 (264)
                      .....++.|
T Consensus       305 ~~~g~~~~p  313 (493)
T PTZ00421        305 PHKGLCMMP  313 (493)
T ss_pred             CCcceEecc
Confidence            223444544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-32  Score=226.85  Aligned_cols=235  Identities=21%  Similarity=0.320  Sum_probs=192.0

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      +--..||.+.+|-+   --+++++||.|..||||+.++++.+.+|+.|.+-|++++.+|..-++.|+|+|-+||+||...
T Consensus        52 eV~~~PvRa~kfia---RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~  128 (794)
T KOG0276|consen   52 EVSEVPVRAAKFIA---RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN  128 (794)
T ss_pred             eecccchhhheeee---ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence            33456788888885   567999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Cc-EEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC-CeEEEEeeCCC
Q 024676           93 GD-EKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTDSG  168 (264)
Q Consensus        93 ~~-~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d~  168 (264)
                      +. +.++++ |++.|+.++++| +.+.+++++.|+++|+|.+..+..... +..|...++++++.+.+ ..+++++++|.
T Consensus       129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT-l~gHekGVN~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  129 EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT-LEGHEKGVNCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee-eeccccCcceEEeccCCCcceEEecCCCc
Confidence            74 556665 999999999999 668899999999999999987665444 44678889999998755 44788999999


Q ss_pred             eEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEE-EeCCCcEEEEECCCceeeeEEecCCCC-ceeeEcCCCCCEEEE
Q 024676          169 GVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIA  245 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  245 (264)
                      +|+|||..+.+|+++++++ ..|+.+.|+|.=.+++ +++|+++|||+..+++..++++..-.. -++.... .+..++.
T Consensus       208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~v  286 (794)
T KOG0276|consen  208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAV  286 (794)
T ss_pred             eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEE
Confidence            9999999999999999865 5699999999876654 567999999999999887777664332 2222222 2334555


Q ss_pred             ecCCCeE
Q 024676          246 GGEDMWV  252 (264)
Q Consensus       246 gs~d~~v  252 (264)
                      |...|.|
T Consensus       287 G~Deg~i  293 (794)
T KOG0276|consen  287 GFDEGSV  293 (794)
T ss_pred             eccCCcE
Confidence            5444433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.1e-31  Score=223.74  Aligned_cols=245  Identities=19%  Similarity=0.333  Sum_probs=204.5

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCC-CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKD-SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d-~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      -..+|..+.|+.   .|.+||.|+.- |++.||+-.+...+...+||...+.+++++|||+++|||+.||.|||||..++
T Consensus       306 s~~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg  382 (893)
T KOG0291|consen  306 SDQKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG  382 (893)
T ss_pred             ccceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence            345788888884   78898887654 78999999888888888999999999999999999999999999999999999


Q ss_pred             cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676           94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus        94 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      -+..++ +|+..|+.++|+..++.+++.+.||++|.||+.....-.....+..-...|++--|.+..+++++.+.=.|++
T Consensus       383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV  462 (893)
T ss_pred             eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence            999998 4999999999999999999999999999999976543222222333345666666667665655555558999


Q ss_pred             EECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCc-eeeeEEecCCCCceeeEcCCCCCEEEEecCC
Q 024676          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (264)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d  249 (264)
                      |+++||+.+..+. ++.||.++.|+|.+..|+++ .|.+||+||+-.. ..+.++.+........+.| +|+.++++..|
T Consensus       463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTld  541 (893)
T KOG0291|consen  463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLD  541 (893)
T ss_pred             EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEec
Confidence            9999999998886 45789999999999988775 5999999998543 4577888888888888988 58999999999


Q ss_pred             CeEEEEEcCcceee
Q 024676          250 MWVHVFDFHTGEQI  263 (264)
Q Consensus       250 ~~v~vwd~~~g~~i  263 (264)
                      |.|-+||.+.+.+.
T Consensus       542 gqItf~d~~~~~q~  555 (893)
T KOG0291|consen  542 GQITFFDIKEAVQV  555 (893)
T ss_pred             ceEEEEEhhhceee
Confidence            99999999888765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.1e-30  Score=206.78  Aligned_cols=241  Identities=27%  Similarity=0.461  Sum_probs=203.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ....+|..++..+.|.|   ++++|++++.|+.+++|+..+++.+..+.+|...|.++.|++++.++++++.|+.+++||
T Consensus        45 ~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  121 (289)
T cd00200          45 RTLKGHTGPVRDVAASA---DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD  121 (289)
T ss_pred             EEEecCCcceeEEEECC---CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            44568999999999996   678999999999999999998888888999999999999999988999998899999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      +.+++....+. |...+..+.++|+++++++++.|+.+++||++.++.. .....+...+.++.|.+++..++++ +.++
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~  199 (289)
T cd00200         122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSS-SSDG  199 (289)
T ss_pred             CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECCCcCEEEEe-cCCC
Confidence            99877776665 7778999999999998888888999999999866543 3334566789999998877665554 4579


Q ss_pred             eEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEE
Q 024676          169 GVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIA  245 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  245 (264)
                      .|++||+++++.+..+ .+..++.++.++|++.+++++. ++.+++||+.+++.+..+..+. ....+.+.++ +.+|++
T Consensus       200 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~  278 (289)
T cd00200         200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD-GKRLAS  278 (289)
T ss_pred             cEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC-CCEEEE
Confidence            9999999998888877 4556899999999988888776 8999999999888877776433 3456677764 789999


Q ss_pred             ecCCCeEEEEE
Q 024676          246 GGEDMWVHVFD  256 (264)
Q Consensus       246 gs~d~~v~vwd  256 (264)
                      ++.|+.+++|+
T Consensus       279 ~~~d~~i~iw~  289 (289)
T cd00200         279 GSADGTIRIWD  289 (289)
T ss_pred             ecCCCeEEecC
Confidence            99999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.3e-33  Score=222.63  Aligned_cols=239  Identities=18%  Similarity=0.253  Sum_probs=198.3

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCC-cCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H-~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ++..|..+|.++.|++   +|+++++|+.+|.|++|...-+. ++.+.+| ...|++++|+|+...++|+|.|++|+|||
T Consensus       133 ilQaHDs~Vr~m~ws~---~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSH---NGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             HhhhhcccceeEEEcc---CCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence            4468999999999995   99999999999999999886443 4556665 48999999999999999999999999999


Q ss_pred             CCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      ..-......+ .|.-.|.++.|+|.-.++++++.|+.+++||.++++...... .|+..|..+.|++.+ .+|++++.|.
T Consensus       209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~-N~Llt~skD~  286 (464)
T KOG0284|consen  209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNG-NWLLTGSKDQ  286 (464)
T ss_pred             ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCC-CeeEEccCCc
Confidence            8776554444 377789999999999999999999999999999988764443 567788999999876 6788889999


Q ss_pred             eEEEEECCCCceeEEec-CCCCEEEEEEcCCC-cEE-EEeCCCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCCEE
Q 024676          169 GVRLWDARSGKIVQTLE-TKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIF  243 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  243 (264)
                      .++++|+|+-+.+..+. +...+.+++|+|-. .+| +++.|+.|.+|.+...+++-.+...  ..+.+..++| .|++|
T Consensus       287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil  365 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHIL  365 (464)
T ss_pred             eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeE
Confidence            99999999888888776 55679999999965 344 4467899999999866666555442  2345677887 69999


Q ss_pred             EEecCCCeEEEEE
Q 024676          244 IAGGEDMWVHVFD  256 (264)
Q Consensus       244 ~~gs~d~~v~vwd  256 (264)
                      ++|+.|.++++|.
T Consensus       366 ~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  366 ATGSNDRTVRFWT  378 (464)
T ss_pred             eecCCCcceeeec
Confidence            9999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.6e-31  Score=204.79  Aligned_cols=238  Identities=24%  Similarity=0.362  Sum_probs=198.1

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWD   89 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd   89 (264)
                      ++.||++.|..+.|++   |+++|++++.|++++.||.++|+.++.+++|..-|+++....-+. ++.||+.|+++|+||
T Consensus        85 ~lkgHsgAVM~l~~~~---d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMR---DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             eeccccceeEeeeecc---CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence            4579999999999995   999999999999999999999999999999999999999665554 467899999999999


Q ss_pred             CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      +++.+.+.+++.+..++++.|..++..+.+|+-|+.|++||++..+... ....|...|..+..++.+..++ +-+-|.+
T Consensus       162 ~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~-~lsGh~DtIt~lsls~~gs~ll-snsMd~t  239 (338)
T KOG0265|consen  162 IRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY-TLSGHADTITGLSLSRYGSFLL-SNSMDNT  239 (338)
T ss_pred             ecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE-EeecccCceeeEEeccCCCccc-cccccce
Confidence            9999999999888899999999999999999999999999998776554 4456788999999888776555 5566699


Q ss_pred             EEEEECCC----CceeEEecCC-----CCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCC-CceeeEcCC
Q 024676          170 VRLWDARS----GKIVQTLETK-----SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPK  238 (264)
Q Consensus       170 v~iwd~~~----~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~  238 (264)
                      +++||.+-    .+++..++.+     -....+.|+|+++++.++ .|+.+.+||......+-.+..+.. .....|.| 
T Consensus       240 vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-  318 (338)
T KOG0265|consen  240 VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-  318 (338)
T ss_pred             EEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-
Confidence            99999974    4456655432     234567899999998765 589999999988777766665544 34556666 


Q ss_pred             CCCEEEEecCCCeEEE
Q 024676          239 LGNIFIAGGEDMWVHV  254 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~v  254 (264)
                      ...++.+++.|++|++
T Consensus       319 ~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  319 TEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCcEEEEeccCceeEe
Confidence            5789999999999886

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.8e-30  Score=236.85  Aligned_cols=241  Identities=16%  Similarity=0.216  Sum_probs=189.4

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----c----eEEeeeCCcCCEEEEEECC-CCcEEEEecCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----D----WIGTFEGHKGAVWSCCLDA-NALFSASGSADF   83 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~----~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~   83 (264)
                      .+|...|.+++|+|   +|++||+|+.|+.|++|+..+.    .    ....+.+ ...|.+++|++ ++.++++++.|+
T Consensus       480 ~~~~~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        480 LNSSNLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCC
Confidence            35999999999996   8999999999999999997542    1    1223343 46789999987 467899999999


Q ss_pred             eEEEEeCCCCcEEEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEE
Q 024676           84 TAKLWDALTGDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      +|++||+.++..+..+ .|...|++++|+| ++.+|++|+.|++|++||++++..... +. ....+.++.|.++++.++
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-~~-~~~~v~~v~~~~~~g~~l  633 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-IK-TKANICCVQFPSESGRSL  633 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE-Ee-cCCCeEEEEEeCCCCCEE
Confidence            9999999988777666 4888999999997 788999999999999999987654322 22 345788889877777788


Q ss_pred             EEeeCCCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCc------eeeeEEecCCC-Cce
Q 024676          162 SSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHF------GLVKGYNMPCN-TES  232 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~------~~~~~~~~~~~-~~~  232 (264)
                      ++++.|+.|++||+++.+ .+..+. +...|.++.|.+...+++++.|++|++||++..      ..++.+..+.. ...
T Consensus       634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            889999999999998865 344444 456799999985445556677999999999742      45666665443 344


Q ss_pred             eeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      ..+.+ .+.+|++|+.|+.|++|+....
T Consensus       714 v~~s~-~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        714 VGLSV-SDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEEcC-CCCEEEEEeCCCEEEEEECCCC
Confidence            56666 4789999999999999997644

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=6.9e-31  Score=228.12  Aligned_cols=240  Identities=21%  Similarity=0.352  Sum_probs=197.6

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      +.||++.|++++|..   .+.+|++||.|+++++||..+|+++..|.||...|.++...  ...+++||+|.+||+|++.
T Consensus       245 l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             ccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence            679999999999974   46799999999999999999999999999999999887764  4667899999999999999


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ++..+..+. |..+|+++..+  +.++++|+.|++|++||+.+++...... .|.+.|.++.+.+.  ..+.+++.|++|
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~--~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE--NRLLSGSLDTTI  394 (537)
T ss_pred             CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecCc--ceEEeeeeccce
Confidence            999999988 99999999988  7799999999999999999777654444 48889999865432  567788888999


Q ss_pred             EEEECCCC-ceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC
Q 024676          171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (264)
Q Consensus       171 ~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~  248 (264)
                      ++||+++. +++..+.++..+.. .+...++++++ +-|++|++||...+++++++..+.......+.. ....+++++.
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v~-~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~-~~~~il~s~~  472 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLVS-SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL-GKEEILCSSD  472 (537)
T ss_pred             EeecCCchhhhhhhhcCCccccc-ccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeec-CcceEEEEec
Confidence            99999999 89988887655331 22334456655 458999999999999999998752122222222 1478999999


Q ss_pred             CCeEEEEEcCcceee
Q 024676          249 DMWVHVFDFHTGEQI  263 (264)
Q Consensus       249 d~~v~vwd~~~g~~i  263 (264)
                      |+++++||+.+|+.+
T Consensus       473 ~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  473 DGSVKLWDLRSGTLI  487 (537)
T ss_pred             CCeeEEEecccCchh
Confidence            999999999998764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7e-31  Score=213.88  Aligned_cols=246  Identities=21%  Similarity=0.319  Sum_probs=195.1

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--Cc------eEEee--eCC----cCCEEEEEECCCCcEEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GD------WIGTF--EGH----KGAVWSCCLDANALFSAS   78 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~~------~~~~~--~~H----~~~V~~v~~~~~~~~l~s   78 (264)
                      .+|+.+|.+++|+|..  ...|++|+.|-..++|++..  ..      +...+  .++    ...|.+++|+.+|.+||+
T Consensus       175 l~~~~~V~~~~WnP~~--~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat  252 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLR--DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT  252 (524)
T ss_pred             ccCCCceEEEecCchh--hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence            3499999999999853  23789999999999998753  11      11112  222    357999999999999999


Q ss_pred             ecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC----------------------
Q 024676           79 GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA----------------------  136 (264)
Q Consensus        79 ~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~----------------------  136 (264)
                      |+.||.+|||+...+.....-.|..||..+.|+..+.++++++.|+++-+||.-+++.                      
T Consensus       253 G~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F  332 (524)
T KOG0273|consen  253 GSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF  332 (524)
T ss_pred             eecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence            9999999999976554433346999999999999999999999999999999844321                      


Q ss_pred             ------------------CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcC
Q 024676          137 ------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSR  197 (264)
Q Consensus       137 ------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~  197 (264)
                                        +...+.+|.++|.++.|.|. +.+|++|++|++++||......+.+.+..+ ..|..+.|+|
T Consensus       333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp  411 (524)
T KOG0273|consen  333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP  411 (524)
T ss_pred             eecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence                              12223347788999999875 458899999999999998887777777644 4699999998


Q ss_pred             CC---------c-EEEEeCCCcEEEEECCCceeeeEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          198 DG---------R-YITTADGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       198 ~~---------~-~l~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .|         . +++++.|.++++||+..+.++.+|..+ .+..+..|.| +|+++++|+.|+.|.+|+..+|+.
T Consensus       412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l  486 (524)
T KOG0273|consen  412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKL  486 (524)
T ss_pred             CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchhe
Confidence            65         2 345677999999999999999999544 4555667776 599999999999999999998874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.8e-30  Score=205.56  Aligned_cols=247  Identities=14%  Similarity=0.264  Sum_probs=197.1

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+..|+.+|-+|..+|   +.++++||+.|....+|+..++++...+.+|++.|.++.|+.++.+||||..+|.|+||+
T Consensus        58 ~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             eehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            45578999999999997   677999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      ..++.....+. ....+.=+.|||-..+|++|+.|+.+-+|.+++.. .......|+.+.++-.+.|+++. ++++.+||
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr-~~tgy~dg  212 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKR-ILTGYDDG  212 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCce-EEEEecCc
Confidence            99998777764 33456667899999999999999999999998753 33444568888999899988654 55677889


Q ss_pred             eEEEEECCCCceeEEecC------C-----------------C----------CE-------------------EEEEEc
Q 024676          169 GVRLWDARSGKIVQTLET------K-----------------S----------PV-------------------TSAEVS  196 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~------~-----------------~----------~v-------------------~~~~~s  196 (264)
                      +|++|++.++++++.+..      .                 .          .|                   .++.+.
T Consensus       213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~  292 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI  292 (399)
T ss_pred             eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence            999999999998876651      0                 0          00                   111111


Q ss_pred             CCC---cEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          197 RDG---RYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       197 ~~~---~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      |-.   .+.+++ -|++|-|||+.+...=+.+........+-|.+  ..+|++++.||.||.||.++|+..
T Consensus       293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~  361 (399)
T KOG0296|consen  293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLK  361 (399)
T ss_pred             ccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceE
Confidence            111   233444 48999999998776555555555566666665  678999999999999999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.3e-31  Score=199.59  Aligned_cols=244  Identities=22%  Similarity=0.336  Sum_probs=206.1

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEe
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD   89 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd   89 (264)
                      .+|...|..|+|+   .+|+.|++|+.|+++.+|+++.++++..  ..||.+.|-.++|+|.. ..+++++.|++|++||
T Consensus        17 ~~~~~~v~Sv~wn---~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   17 QGHVQKVHSVAWN---CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             hhhhhcceEEEEc---ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5899999999999   4999999999999999999988865543  56899999999998754 6789999999999999


Q ss_pred             CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      ..++++....+....-..+.|+|++++++.+..|..|...|.++.+.....  .....+..++|..++..++++.+. |.
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~Gl-G~  170 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGL-GC  170 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCC-ce
Confidence            999999998887777778899999999999999999999999865543322  234567778888666666766554 99


Q ss_pred             EEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEe
Q 024676          170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAG  246 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g  246 (264)
                      |.|......+++..++.+ ....++.|+|+|++++++. |..+.+||+...-+++.|.- ..+...++|+. +|++|++|
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASa  249 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASA  249 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeecc
Confidence            999999999999888755 4588899999999998765 77899999999888888854 45566778877 59999999


Q ss_pred             cCCCeEEEEEcCcceee
Q 024676          247 GEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       247 s~d~~v~vwd~~~g~~i  263 (264)
                      |+|..|.|=++.||+.+
T Consensus       250 SEDh~IDIA~vetGd~~  266 (313)
T KOG1407|consen  250 SEDHFIDIAEVETGDRV  266 (313)
T ss_pred             CccceEEeEecccCCeE
Confidence            99999999999999875

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-29  Score=196.72  Aligned_cols=252  Identities=22%  Similarity=0.273  Sum_probs=203.9

Q ss_pred             ceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC--
Q 024676            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA--   81 (264)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~--   81 (264)
                      +++.+-+++..-...|.+|.|++   +|.+|++++.|.++++||..+++.++++..++-.|..++|......++.++.  
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             cccccccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC
Confidence            34555666666788999999996   9999999999999999999999999999988889999999877777666666  


Q ss_pred             CCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      |.+||.-++.+++.++.+. |...|+.++.+|-+..+++++.|++||+||++..+.+.....   .....+++-| .+.+
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp-~GLi  154 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDP-EGLI  154 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECC-CCcE
Confidence            8999999999999999886 999999999999999999999999999999986654433321   2233456655 4556


Q ss_pred             EEEeeCCCeEEEEECCCCc--eeEEec----CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC----
Q 024676          161 LSSCTDSGGVRLWDARSGK--IVQTLE----TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN----  229 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~--~~~~~~----~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~----  229 (264)
                      +|.+...+.|++||+|+-.  +..++.    ....++.+.|||||+++.. ...+.+.+.|.-.+....+|....+    
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~  234 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL  234 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence            6666665699999999742  334442    3467999999999998655 4567899999999998888876433    


Q ss_pred             CceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       230 ~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +..+.+.| ++.++.+|+.||+|++|++++|+++
T Consensus       235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEe
Confidence            24667777 5999999999999999999999886

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.1e-29  Score=220.00  Aligned_cols=252  Identities=14%  Similarity=0.206  Sum_probs=183.3

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE-------------EeeeCCcCCEEEEEECC-
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-------------GTFEGHKGAVWSCCLDA-   71 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~-------------~~~~~H~~~V~~v~~~~-   71 (264)
                      +..|..-..|-..|....++   +|+..+++++.+..+..|+...+..+             ..+.||.+.|.+++|+| 
T Consensus        10 ~g~~~k~~~~~~~i~~~~~~---~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~   86 (493)
T PTZ00421         10 QGVPARPDRHFLNVTPSTAL---WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF   86 (493)
T ss_pred             ccccCCcccceecccccccc---CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC
Confidence            33443334455555544444   47677788888888888876443221             24789999999999999 


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCc-------EEEEe-ecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676           72 NALFSASGSADFTAKLWDALTGD-------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        72 ~~~~l~s~s~D~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (264)
                      ++.+|+||+.|++|++||+.++.       ++..+ .|...|..++|+|++ ++|++++.|++|++||+++++.. ..+.
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~-~~l~  165 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV-EVIK  165 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE-EEEc
Confidence            78899999999999999987642       23333 488899999999975 69999999999999999876533 3445


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC--CEEEEEEcCCCcEE-EEe----CCCcEEEEEC
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYI-TTA----DGSSVKFWDA  215 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l-~~~----~~~~i~iwd~  215 (264)
                      .|...+.+++|++++ .++++++.|++|+|||+++++.+..+..+.  ....+.|.+++..+ +++    .++.|++||+
T Consensus       166 ~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        166 CHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             CCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence            577889999999865 467777888999999999999887776543  24567788886554 433    3689999999


Q ss_pred             CCce-eeeEEecCCC-Ccee-eEcCCCCCEEEEec-CCCeEEEEEcCcceee
Q 024676          216 NHFG-LVKGYNMPCN-TESA-SLEPKLGNIFIAGG-EDMWVHVFDFHTGEQI  263 (264)
Q Consensus       216 ~~~~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~gs-~d~~v~vwd~~~g~~i  263 (264)
                      ++.. ++........ .... .+.+ ++.+|++|| .|+.|++||+.+++.+
T Consensus       245 r~~~~p~~~~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~  295 (493)
T PTZ00421        245 RKMASPYSTVDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLT  295 (493)
T ss_pred             CCCCCceeEeccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceE
Confidence            8764 3444433322 2222 3444 577777776 5999999999887754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-31  Score=228.06  Aligned_cols=250  Identities=21%  Similarity=0.306  Sum_probs=192.7

Q ss_pred             CcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC
Q 024676            2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (264)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~   81 (264)
                      |=||....-.+..|.+||.+|.|+|..|   .+++|+.|..|++|+..+.+++.++.||-+-|+.+.|++.--.++|+|+
T Consensus        37 DYRM~tli~rFdeHdGpVRgv~FH~~qp---lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD  113 (1202)
T KOG0292|consen   37 DYRMGTLIDRFDEHDGPVRGVDFHPTQP---LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD  113 (1202)
T ss_pred             hhhhhhHHhhhhccCCccceeeecCCCC---eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC
Confidence            4455555556679999999999998555   8999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC---Ce------------------
Q 024676           82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PR------------------  139 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~------------------  139 (264)
                      |+|||||+..++.++..+. |.+.|++..|+|...+++|+|.|.+||+||+..-+..   ..                  
T Consensus       114 DQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~  193 (1202)
T KOG0292|consen  114 DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ  193 (1202)
T ss_pred             CCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCC
Confidence            9999999999999998875 9999999999999999999999999999997421110   00                  


Q ss_pred             -------EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--eEEe-cCCCCEEEEEEcCCCcEEEE-eCCC
Q 024676          140 -------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTL-ETKSPVTSAEVSRDGRYITT-ADGS  208 (264)
Q Consensus       140 -------~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~-~~~~  208 (264)
                             ...+|.-.++-++|.| .-.++++|++|+.||+|....-+.  +.+. .+.++|.++-|+|...++.+ ++|+
T Consensus       194 ~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk  272 (1202)
T KOG0292|consen  194 TDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK  272 (1202)
T ss_pred             cCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence                   0112223344445443 335788999999999999875442  2223 34578999999998877655 7799


Q ss_pred             cEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          209 SVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      .|++||+.+...+++|.- +...-.++.+|. ..+|++|. |+-+-||.+
T Consensus       273 sirVwDm~kRt~v~tfrrendRFW~laahP~-lNLfAAgH-DsGm~VFkl  320 (1202)
T KOG0292|consen  273 SIRVWDMTKRTSVQTFRRENDRFWILAAHPE-LNLFAAGH-DSGMIVFKL  320 (1202)
T ss_pred             cEEEEecccccceeeeeccCCeEEEEEecCC-cceeeeec-CCceEEEEE
Confidence            999999999999999864 333444455553 44454443 344555543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-30  Score=212.59  Aligned_cols=240  Identities=18%  Similarity=0.300  Sum_probs=198.4

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~   92 (264)
                      ...+.|+.+.|..   ||++|++|...|.|+|+|..+..-++.+.+|+++|+.+.|+|+ ++.+++|++|+.+++||+.+
T Consensus        66 rFk~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   66 RFKDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             hhccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            3456788898984   9999999999999999996665567889999999999999985 46689999999999999999


Q ss_pred             CcEEEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           93 GDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        93 ~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      +..+..+ .|++.|++.+|+| ++.+++|||+|++||+||++.... .....+|..+|..+.+.|++. ++++++. ..|
T Consensus       143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~elnhg~pVe~vl~lpsgs-~iasAgG-n~v  219 (487)
T KOG0310|consen  143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVELNHGCPVESVLALPSGS-LIASAGG-NSV  219 (487)
T ss_pred             cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-eeEEecCCCceeeEEEcCCCC-EEEEcCC-CeE
Confidence            8764444 4899999999999 466899999999999999987643 233346888999999998765 4556555 689


Q ss_pred             EEEECCCCcee-EEe-cCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEec
Q 024676          171 RLWDARSGKIV-QTL-ETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG  247 (264)
Q Consensus       171 ~iwd~~~~~~~-~~~-~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs  247 (264)
                      |+||+-+|..+ ..+ +++..|+|+.+..++..| +++-|+.+++||+.+++.++++.++....+++.+| +++.++.|-
T Consensus       220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~-dd~t~viGm  298 (487)
T KOG0310|consen  220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP-DDQTVVIGM  298 (487)
T ss_pred             EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC-CCceEEEec
Confidence            99999966543 333 367789999999988655 55669999999999999999999999999999998 588899999


Q ss_pred             CCCeEEEEEcCcc
Q 024676          248 EDMWVHVFDFHTG  260 (264)
Q Consensus       248 ~d~~v~vwd~~~g  260 (264)
                      +||.+.+=+....
T Consensus       299 snGlv~~rr~~~k  311 (487)
T KOG0310|consen  299 SNGLVSIRRREVK  311 (487)
T ss_pred             ccceeeeehhhcc
Confidence            9998887654433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-30  Score=222.04  Aligned_cols=244  Identities=20%  Similarity=0.295  Sum_probs=199.7

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      -|-.++|..+.|--  |+.++|+.++..+.+|+++..+..+. .+.||+..|.++....+|.+++|||+|+++++|.++.
T Consensus       320 vG~ndEI~Dm~~lG--~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  320 VGYNDEILDMKFLG--PEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             cCCchhheeeeecC--CccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence            47777888888863  57789999999999999988776654 7899999999999777889999999999999998855


Q ss_pred             CcEEE-----EeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCC--e------EeccCCCCeEEEEEecCCC
Q 024676           93 GDEKH-----SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPP--R------EVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        93 ~~~~~-----~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~--~------~~~~~~~~i~~~~~~~~~~  158 (264)
                      +....     ...|++.|.+++++.. ..+++++|.|+++++|+++..+...  .      ....|...|++++..|++ 
T Consensus       397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-  475 (775)
T KOG0319|consen  397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-  475 (775)
T ss_pred             CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-
Confidence            43221     1248889999999774 4788999999999999997622111  1      113467789999988754 


Q ss_pred             eEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC-CCCceeeE
Q 024676          159 TILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP-CNTESASL  235 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~  235 (264)
                      .++++|+.|++.+||+++.++.+..+..+ ..+-++.|+|+.+.+++ +.|.+|+||.+.++.++++|..+ +......|
T Consensus       476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F  555 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF  555 (775)
T ss_pred             ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence            68999999999999999988888888765 45999999999888765 55899999999999999999865 44556666


Q ss_pred             cCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          236 EPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       236 ~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .. .+..|++++.||.+++|+.++++
T Consensus       556 ~~-~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  556 IR-NGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             ee-CCcEEEeccCCCcEEEEeccchh
Confidence            65 48999999999999999999876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.7e-32  Score=215.05  Aligned_cols=244  Identities=19%  Similarity=0.294  Sum_probs=189.2

Q ss_pred             CcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC
Q 024676            2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (264)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~   81 (264)
                      |++...+.+++-||++.|.|+.|.     .+.+++||.|.+|++||.++|+++.++-+|...|..+.|+  +.+++|+|+
T Consensus       223 D~n~~~c~~~L~GHtGSVLCLqyd-----~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSk  295 (499)
T KOG0281|consen  223 DKNSLECLKILTGHTGSVLCLQYD-----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSK  295 (499)
T ss_pred             ccccHHHHHhhhcCCCcEEeeecc-----ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecC
Confidence            667777888889999999999996     4699999999999999999999999999999999999997  468899999


Q ss_pred             CCeEEEEeCCCCcEEE----EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676           82 DFTAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  157 (264)
                      |.++.+||+.+...+.    ...|...|+.+.|+  ++++++++.|++|++|++.+.+.. ..+..|+-.|.|..+   .
T Consensus       296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv-Rtl~gHkRGIAClQY---r  369 (499)
T KOG0281|consen  296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV-RTLNGHKRGIACLQY---R  369 (499)
T ss_pred             CceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee-hhhhcccccceehhc---c
Confidence            9999999987754211    12377789998775  679999999999999999887754 334456666766655   4


Q ss_pred             CeEEEEeeCCCeEEEEECCCCceeEEecCCC-CEEEEEEcCCCcEEE-EeCCCcEEEEECCCceeeeEE----ec---CC
Q 024676          158 QTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGY----NM---PC  228 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~----~~---~~  228 (264)
                      +.++++|+.|.+|++||++.|.++..++++. -|.++.|.  .+.++ ++=||+|++||+.....-+..    ..   ..
T Consensus       370 ~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~  447 (499)
T KOG0281|consen  370 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE  447 (499)
T ss_pred             CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence            5688889999999999999999998887664 48888885  34454 455999999999765322111    10   01


Q ss_pred             CC-ceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          229 NT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       229 ~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      +. ..+.+.. +...+++++-|.+|.+||+..|-
T Consensus       448 hsgRVFrLQF-D~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  448 HSGRVFRLQF-DEFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             ccceeEEEee-cceEEEeccCCCeEEEEEcCCCC
Confidence            11 1222222 24578899999999999998763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=1.7e-31  Score=209.01  Aligned_cols=242  Identities=24%  Similarity=0.351  Sum_probs=201.8

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--------eeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--------FEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--------~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      |.+.-+-|..|+|   ||+||++||.||-+.+|+..+|+..+.        |-.|.++|.|+.|+.|...++||+.||.|
T Consensus       211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI  287 (508)
T KOG0275|consen  211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI  287 (508)
T ss_pred             ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence            5555566788885   999999999999999999999976543        44588999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           86 KLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      |+|.+.+|.+++.+.  |...|+++.|+.++..+++++.|.++|+..+.+++...+. ..|...++...|.+++ +.+++
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG-~~iis  365 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDG-HHIIS  365 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCC-CeEEE
Confidence            999999999998885  8889999999999999999999999999999988765444 4577788888887655 55667


Q ss_pred             eeCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCceeeeEEecC----CCCceee
Q 024676          164 CTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMP----CNTESAS  234 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~~  234 (264)
                      ++.||+|++|+.++.+|+.+++.   ..+|+++..-|.+  .++++-..+++.|.++. +..+++|...    .......
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence            78889999999999999988854   4578888887765  46677667899998884 4567777542    3455667


Q ss_pred             EcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       235 ~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .+|+ |+++.+.++|+.++.|.+.+|+.
T Consensus       445 lSpk-GewiYcigED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  445 LSPK-GEWIYCIGEDGVLYCFSVLSGKL  471 (508)
T ss_pred             ecCC-CcEEEEEccCcEEEEEEeecCce
Confidence            7775 99999999999999999988753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=2.6e-29  Score=192.06  Aligned_cols=239  Identities=21%  Similarity=0.359  Sum_probs=184.8

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-c--eEEee-eCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-D--WIGTF-EGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~--~~~~~-~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      ..+.||++.|+.++|+|-.  |..||+|+.|+.||+|+...+ .  +...+ .+|+-.|++++|+|.+++|++||-|.++
T Consensus         8 ~~~~gh~~r~W~~awhp~~--g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGK--GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             EeecCCCCcEEEEEeccCC--ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            3457999999999999832  789999999999999998843 2  33334 4799999999999999999999999999


Q ss_pred             EEEeCCCC--cEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC-C-CeEeccCCCCeEEEEEecCCCeE
Q 024676           86 KLWDALTG--DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-P-PREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        86 ~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      -||.-..+  ++..+++ |+..|-+++|+++|++|++|+.|+.+-+|.+..... . ...+..|..-+-.+.|.|. +-+
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt-~dl  164 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT-EDL  164 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-cce
Confidence            99987765  4566665 889999999999999999999999999999864322 1 1233457778888888764 457


Q ss_pred             EEEeeCCCeEEEEECC-CC--ceeEEecCC-CCEEEEEEcCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCC-Cceee
Q 024676          161 LSSCTDSGGVRLWDAR-SG--KIVQTLETK-SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCN-TESAS  234 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~-~~--~~~~~~~~~-~~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~  234 (264)
                      |++++.|++||+|+-. ..  ++++++..+ +.|-+++|+|.|.. ..+++|++++||-..+.-  .  ..+.. ...+.
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--~--~~~sr~~Y~v~  240 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--S--GMHSRALYDVP  240 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--c--hhcccceEeee
Confidence            8899999999999876 33  467777655 46999999999855 556678999999865220  0  01111 12233


Q ss_pred             EcCCCCCEEEEecCCCeEEEEEcC
Q 024676          235 LEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       235 ~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +.   ...+++++.|+.|++|.-.
T Consensus       241 W~---~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  241 WD---NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             ec---ccceEeccCCCEEEEEEec
Confidence            32   4679999999999999654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.98  E-value=1e-31  Score=203.24  Aligned_cols=243  Identities=18%  Similarity=0.273  Sum_probs=200.6

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .+.||++.|+....+.   +....|++++|.+.++||.-+|..+..|+ |+..|.+++|+.|..+|+||+.++.+||+|+
T Consensus        54 tfeghkgavw~~~l~~---na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl  129 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNK---NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL  129 (334)
T ss_pred             eeeccCcceeeeecCc---hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence            4579999999876663   55577999999999999999999888887 9999999999999999999999999999998


Q ss_pred             CCCc--EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           91 LTGD--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        91 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      +..+  +...-.|...|..+.|...++.+++.+.|+++|+||.+++.......  .+.++.++..++++.. ++.+ +.+
T Consensus       130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~i-lTia-~gs  205 (334)
T KOG0278|consen  130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRI-LTIA-YGS  205 (334)
T ss_pred             cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCE-EEEe-cCc
Confidence            7653  22333488899999999999999999999999999999887654443  3457788887776654 4333 447


Q ss_pred             eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEe-cC-CCCceeeEcCCCCCEEEE
Q 024676          169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYN-MP-CNTESASLEPKLGNIFIA  245 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~  245 (264)
                      .|++||..+...+..++....|.+..++|+..++ ++++|..++-||..+++.+..|. .+ ...-+..|.| +|...++
T Consensus       206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAs  284 (334)
T KOG0278|consen  206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYAS  284 (334)
T ss_pred             eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeec
Confidence            9999999999999999998999999999997655 45668999999999998887773 23 3344667777 6999999


Q ss_pred             ecCCCeEEEEEcCccee
Q 024676          246 GGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       246 gs~d~~v~vwd~~~g~~  262 (264)
                      ||+||+||+|-+..++.
T Consensus       285 GSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  285 GSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cCCCceEEEEEecCCCc
Confidence            99999999999877653

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=5.3e-32  Score=214.13  Aligned_cols=250  Identities=20%  Similarity=0.269  Sum_probs=205.4

Q ss_pred             cceeecceEe--eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676            3 KRKVAVPLVC--HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (264)
Q Consensus         3 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s   80 (264)
                      +|++++|.++  .||.+.|.+++-+|..+  ..+++||.||.|++||+.+..++.+|+.|.+.|..++++.  ..++|++
T Consensus        51 eR~fakPFv~~L~gHrdGV~~lakhp~~l--s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg  126 (433)
T KOG0268|consen   51 ERVFAKPFVGSLDGHRDGVSCLAKHPNKL--STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG  126 (433)
T ss_pred             HHHhhccchhhccccccccchhhcCcchh--hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec
Confidence            4789999987  59999999999998553  4789999999999999999999999999999999999987  5678999


Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      +|++||.|.+.. .++.++.....+..+..+..+..++||+.  .|-+||....... .....-...+.++.++|-...+
T Consensus       127 dDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv-~smswG~Dti~svkfNpvETsI  202 (433)
T KOG0268|consen  127 DDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPV-SSMSWGADSISSVKFNPVETSI  202 (433)
T ss_pred             CCcceeeeeccC-CcceeeeccccccccccccccccccccCc--eeeecccccCCcc-ceeecCCCceeEEecCCCcchh
Confidence            999999999766 46777777777888888887888998884  5889998654433 3333345678999999988889


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCc-eeeeEEecCCC-CceeeEcC
Q 024676          161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHF-GLVKGYNMPCN-TESASLEP  237 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~  237 (264)
                      |++|..|+.|-+||+|++++++.+.....-+.++|+|++..+ ++.+|..+..+|+++. +++..|.-+.. .....++|
T Consensus       203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence            999988999999999999999888777788899999977444 4556889999999986 44555554433 33455666


Q ss_pred             CCCCEEEEecCCCeEEEEEcCcce
Q 024676          238 KLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       238 ~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                       .|+.|++||.|.+||||.+..|.
T Consensus       283 -tG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  283 -TGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             -CcchhccccccceEEEeecCCCc
Confidence             69999999999999999988764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=2.8e-30  Score=205.42  Aligned_cols=241  Identities=20%  Similarity=0.326  Sum_probs=192.5

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC---CcEEEEecCCCeEEEEe
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWD   89 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~---~~~l~s~s~D~~v~iwd   89 (264)
                      .-|.+=|.+|.-.     +.++++|++||.+++|+.. |+.+.++.||.++|.+++|...   ...++++|.|+++++|.
T Consensus       102 ~~hdDWVSsv~~~-----~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA-----SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             ccchhhhhhhccc-----CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            4577777666443     5799999999999999975 8888999999999999888532   34589999999999999


Q ss_pred             CCCCcEEEE-----eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC------------------------CCCCeE
Q 024676           90 ALTGDEKHS-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP------------------------DAPPRE  140 (264)
Q Consensus        90 ~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~------------------------~~~~~~  140 (264)
                      .+.++....     -.|+.+|.++...+++..+++|++|.++++|+.+..                        +.+...
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            887753322     248889999999999999999999999999993210                        112334


Q ss_pred             eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCce
Q 024676          141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG  219 (264)
Q Consensus       141 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~  219 (264)
                      +..|..++..+.|.+  ...+.+++.|.+|+.||+.++.....+..+.+.+++.++|..++|+++ .|+.|++||.|++.
T Consensus       256 l~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~  333 (423)
T KOG0313|consen  256 LEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD  333 (423)
T ss_pred             ecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC
Confidence            567888999999987  346777888899999999999999999888999999999998888765 58999999999863


Q ss_pred             -ee--eEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          220 -LV--KGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       220 -~~--~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                       .+  ..|-.+.+ .....++|....+|++||.|+++++||+++-.
T Consensus       334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence             22  33333444 33456777777899999999999999998654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=6.3e-30  Score=199.15  Aligned_cols=242  Identities=15%  Similarity=0.212  Sum_probs=198.9

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc--EEEEecCCCeEEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAKL   87 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~--~l~s~s~D~~v~i   87 (264)
                      ..+..|..+|.+|+-+     |.++|+||.|.+|+|||..+...++.+..|.+.|.++.|.+...  +|++|+.||.|.+
T Consensus        37 F~~~aH~~sitavAVs-----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   37 FAFSAHAGSITALAVS-----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             ccccccccceeEEEec-----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            3446899999999875     78999999999999999999988899999999999999998765  8999999999999


Q ss_pred             EeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        88 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      |+...=+.+..+. |.+.|+.++.||.+++.++.+.|+.+++||+-.++........+  .-..+.|+|.+.++++.+ .
T Consensus       112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~-~  188 (362)
T KOG0294|consen  112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSG-R  188 (362)
T ss_pred             EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEe-c
Confidence            9998877666664 88889999999999999999999999999997776544433333  334488999888776664 3


Q ss_pred             CCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCce-ee-EcCCCCCEEE
Q 024676          167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES-AS-LEPKLGNIFI  244 (264)
Q Consensus       167 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~  244 (264)
                       +.|-||.+.+.+....+.....+.++.|-..+.++++++++.|++||-....+...|..+.+... +. +..+.+++++
T Consensus       189 -~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv  267 (362)
T KOG0294|consen  189 -NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV  267 (362)
T ss_pred             -cEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence             58999999998877766665668888888777888888899999999988777777766655432 22 3444689999


Q ss_pred             EecCCCeEEEEEcCcc
Q 024676          245 AGGEDMWVHVFDFHTG  260 (264)
Q Consensus       245 ~gs~d~~v~vwd~~~g  260 (264)
                      ++|.||.|++||++.-
T Consensus       268 TaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  268 TASSDGFIKVWDIDME  283 (362)
T ss_pred             EeccCceEEEEEcccc
Confidence            9999999999998643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.1e-30  Score=198.02  Aligned_cols=240  Identities=20%  Similarity=0.246  Sum_probs=192.5

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~   92 (264)
                      -.+.+-.++|++.  ..+.+++++.||++++||.... .++..|+.|+..|.++.|++. +..++++|.|++||+|+..-
T Consensus        59 ~~D~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             cccceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            3456778999974  4468899999999999995433 468889999999999999975 45678889999999999988


Q ss_pred             CcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           93 GDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        93 ~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      +..+.++. |...|....|+| ..++++++|.|+++++||++..... +.+..|..++.++.|+..+..++++++.|+.|
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLV  215 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCCCceE
Confidence            87777774 888999999999 5688999999999999999877543 44667888999999999999999999999999


Q ss_pred             EEEECCCCc-eeEEecCC-CCEEEEEEcCCCc-EEEEeC-CCcEEEEECCCc-eeeeEEecCCCCc-eeeEcCCCCCEEE
Q 024676          171 RLWDARSGK-IVQTLETK-SPVTSAEVSRDGR-YITTAD-GSSVKFWDANHF-GLVKGYNMPCNTE-SASLEPKLGNIFI  244 (264)
Q Consensus       171 ~iwd~~~~~-~~~~~~~~-~~v~~~~~s~~~~-~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~  244 (264)
                      |.||+|.-+ ++..+..+ -.|..+++||-.. +|++++ |-+++|||.... ..+.++..+.... -+.++.-.+.+++
T Consensus       216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceee
Confidence            999999855 45556544 4699999999863 455554 889999999754 3455555444433 2344444578999


Q ss_pred             EecCCCeEEEEEc
Q 024676          245 AGGEDMWVHVFDF  257 (264)
Q Consensus       245 ~gs~d~~v~vwd~  257 (264)
                      +.|=|+.++||+.
T Consensus       296 s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  296 STGWDELLYVWNP  308 (311)
T ss_pred             ecccccceeeecc
Confidence            9999999999984

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=2.5e-30  Score=204.50  Aligned_cols=239  Identities=21%  Similarity=0.349  Sum_probs=201.3

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      +-||-..|.++++++..|   ||.+++.|+.|+-||++.++.++.+.||-..|++++..|.-..++||++|.++|+||++
T Consensus       189 ltGhi~~vr~vavS~rHp---YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR  265 (460)
T KOG0285|consen  189 LTGHIETVRGVAVSKRHP---YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR  265 (460)
T ss_pred             ecchhheeeeeeecccCc---eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec
Confidence            358999999999998777   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      +...+..+. |..+|..+.+.|-+..+++|+.|.+|++||++.++. .....+|+..+.+++..|. .+.+++++. .-|
T Consensus       266 tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~-e~~fASas~-dni  342 (460)
T KOG0285|consen  266 TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPK-ENLFASASP-DNI  342 (460)
T ss_pred             ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCc-hhhhhccCC-ccc
Confidence            998888876 999999999999888899999999999999987754 3455678888999987664 456666666 369


Q ss_pred             EEEECCCCceeEEecCCC-CEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec---CC------CCceeeEcCCCC
Q 024676          171 RLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM---PC------NTESASLEPKLG  240 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~---~~------~~~~~~~~~~~~  240 (264)
                      +-|++..+..++.+..+. -+++++...|+.++++++.+.|.+||-+.+-.-+..+.   +.      .+...+|.. .+
T Consensus       343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg  421 (460)
T KOG0285|consen  343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TG  421 (460)
T ss_pred             eeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cC
Confidence            999999999887776554 48899999999999999999999999987643333321   11      112334443 58


Q ss_pred             CEEEEecCCCeEEEEEc
Q 024676          241 NIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       241 ~~~~~gs~d~~v~vwd~  257 (264)
                      ..|++|..|.+|++|.-
T Consensus       422 ~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  422 SRLITGEADKTIKMYKE  438 (460)
T ss_pred             ceEEeccCCcceEEEec
Confidence            88999999999999964

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.4e-31  Score=213.42  Aligned_cols=243  Identities=21%  Similarity=0.288  Sum_probs=203.8

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      +++.|...+..+.|-+   +...|++|+.|..|.+|++...+  .+.++.|-.+.|.++.|.++++++++++.|+.+++|
T Consensus       170 ~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence            4578999999999996   44689999999999999987665  678899999999999999999999999999999999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      ++.+.....++. |...|+.+.+......+++|+.|++||.||+.+.......+..+  ....++..   ...++++..|
T Consensus       247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~~~---~~~~~SgH~D  321 (459)
T KOG0288|consen  247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIVCS---ISDVISGHFD  321 (459)
T ss_pred             eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceEec---ceeeeecccc
Confidence            999988777775 89999999998877779999999999999998765543333222  23333322   3457788888


Q ss_pred             CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecC-----CCCceeeEcCCCCC
Q 024676          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMP-----CNTESASLEPKLGN  241 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  241 (264)
                      ++||+||.++..+...+..+..|.++..++++..+ +++.|.++.+.|+++++....|...     +......|+| +++
T Consensus       322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~  400 (459)
T KOG0288|consen  322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGS  400 (459)
T ss_pred             cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCc
Confidence            99999999999999999988899999999999765 5566889999999999998888653     3445566777 699


Q ss_pred             EEEEecCCCeEEEEEcCccee
Q 024676          242 IFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      |+++||.||.|+||++.+|+.
T Consensus       401 YvaAGS~dgsv~iW~v~tgKl  421 (459)
T KOG0288|consen  401 YVAAGSADGSVYIWSVFTGKL  421 (459)
T ss_pred             eeeeccCCCcEEEEEccCceE
Confidence            999999999999999988864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-29  Score=201.21  Aligned_cols=243  Identities=22%  Similarity=0.362  Sum_probs=188.0

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce----EEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW----IGTFEGHKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~----~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      ..++.-||+++|..++|.-..+..+.++++|.|.++++|-.+.++.    +...+||+..|-+|+..+++..++|||.|.
T Consensus       136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~  215 (423)
T KOG0313|consen  136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT  215 (423)
T ss_pred             eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence            4456689999999888875444456899999999999998777653    234469999999999999999999999999


Q ss_pred             eEEEEeCCCC-------------------------cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC
Q 024676           84 TAKLWDALTG-------------------------DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (264)
Q Consensus        84 ~v~iwd~~~~-------------------------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~  137 (264)
                      +++||+..+.                         .++.++ .|..+|..+.|++ ...++++++|.+|+.||++++...
T Consensus       216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~  294 (423)
T KOG0313|consen  216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK  294 (423)
T ss_pred             eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce
Confidence            9999993211                         112222 2888999999999 668999999999999999988765


Q ss_pred             CeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc---eeEEe-cCCCCEEEEEEcCCCcE--EEEeCCCcEE
Q 024676          138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---IVQTL-ETKSPVTSAEVSRDGRY--ITTADGSSVK  211 (264)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~---~~~~~-~~~~~v~~~~~s~~~~~--l~~~~~~~i~  211 (264)
                      ....  .+.++.++++.+ ...++++++.|..+++||.|++.   +.+++ .+.+.|.++.++|...+  +.++-|++++
T Consensus       295 ~~~~--~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  295 STLT--TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             eeee--cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            4444  345789999887 45577788888999999999874   23444 45567999999998754  3445699999


Q ss_pred             EEECCCce-eeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          212 FWDANHFG-LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       212 iwd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      +||+|.-. ++..+..+.. ..++.+.  .+.++++||.|.+++++.
T Consensus       372 lWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  372 LWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             EEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEec
Confidence            99999865 6655544432 3344443  478999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3e-30  Score=223.95  Aligned_cols=243  Identities=20%  Similarity=0.312  Sum_probs=195.9

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      ..-+..|.+|.|+|.-|   +++++-..|.|++||.+=+.++..|..|.++|+.++|+|++.+++||++|..||+|+..+
T Consensus         6 EskSsRvKglsFHP~rP---wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRP---WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             hcccccccceecCCCCC---EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            34566788999999766   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        93 ~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      .+++.++ .|-+.|+.+.||+.-..++|+|.|.+|++|+.-++... ....+|+..+-|.+|.|. +-++++++-|.+||
T Consensus        83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i-avltGHnHYVMcAqFhpt-EDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI-AVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVR  160 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE-EEEecCceEEEeeccCCc-cceEEEecccceEE
Confidence            9888776 48899999999999999999999999999999776554 344567778887776654 44677888889999


Q ss_pred             EEECCCCc---------------------------e--eEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCcee
Q 024676          172 LWDARSGK---------------------------I--VQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL  220 (264)
Q Consensus       172 iwd~~~~~---------------------------~--~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~  220 (264)
                      +||...-+                           +  .+.++++ ..|+-++|+|.--++++ ++|+.|++|.....+.
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence            99975311                           0  0122223 35888999998777665 5679999999865432


Q ss_pred             --eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          221 --VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       221 --~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                        +.+...+.+..+..++.+-.+++++.|+|++|||||++..
T Consensus       241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence              4555556555555444334789999999999999998754

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=8.8e-29  Score=215.78  Aligned_cols=223  Identities=17%  Similarity=0.302  Sum_probs=169.5

Q ss_pred             EEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCCc--------EEEEe-ecCCeE
Q 024676           36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGD--------EKHSF-EHKHIV  105 (264)
Q Consensus        36 t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~--------~~~~~-~~~~~v  105 (264)
                      +|+.++.+++|+......+..+.+|.++|.+++|+|+ +.+|+||+.|++|+|||+.++.        +...+ .|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            3667888899988777778889999999999999997 7899999999999999997642        12222 478899


Q ss_pred             EEEEECCCCCE-EEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe
Q 024676          106 RACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL  184 (264)
Q Consensus       106 ~~~~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~  184 (264)
                      .+++|+|++.. +++++.|++|++||+++++.... + .+...+.+++|++++. ++++++.|+.|+|||+++++.+..+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-i-~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-I-NMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE-E-ecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEE
Confidence            99999998875 56899999999999987754322 2 2456799999998765 5566667799999999999988877


Q ss_pred             cCCC-CEE-----EEEEcCCCcEEE-EeCC----CcEEEEECCC-ceeeeEEecCCCCc--eeeEcCCCCCEEEEecCCC
Q 024676          185 ETKS-PVT-----SAEVSRDGRYIT-TADG----SSVKFWDANH-FGLVKGYNMPCNTE--SASLEPKLGNIFIAGGEDM  250 (264)
Q Consensus       185 ~~~~-~v~-----~~~~s~~~~~l~-~~~~----~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gs~d~  250 (264)
                      ..+. .+.     ...+++++.+++ ++.+    +.|+|||+++ .+++..+.+.....  ...+.++.+.+|++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            6543 222     223568877655 4544    4799999996 45666665543332  2344465688999999999


Q ss_pred             eEEEEEcCcce
Q 024676          251 WVHVFDFHTGE  261 (264)
Q Consensus       251 ~v~vwd~~~g~  261 (264)
                      .||+|++..+.
T Consensus       286 tIr~~e~~~~~  296 (568)
T PTZ00420        286 NCRYYQHSLGS  296 (568)
T ss_pred             eEEEEEccCCc
Confidence            99999997664

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.8e-30  Score=209.79  Aligned_cols=246  Identities=26%  Similarity=0.357  Sum_probs=203.1

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      +..-.+|..|.|+|..|+. +.+|+|.  .+.+|+..+...+++|..-+..|.++.|-.||.+++.|...|.|+++|+.+
T Consensus        23 ~ke~~~vssl~fsp~~P~d-~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~   99 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYD-FAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS   99 (487)
T ss_pred             ccccCcceeEecCCCCCCc-eEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence            3455689999999988864 4455554  478899888887888888889999999999999999999999999999666


Q ss_pred             CcEEEE-eecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           93 GDEKHS-FEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        93 ~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ...++. ..|+.|+..+.|+|++ ..+++|+.|+.+++||+.+... ...+..|+..+.+.++.|..++++++|+.||+|
T Consensus       100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen  100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            443443 3599999999999965 5566788889999999987764 556678999999999999999999999999999


Q ss_pred             EEEECCCC-ceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee--EEecCCCCceeeEcCCCCCEEEEec
Q 024676          171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYNMPCNTESASLEPKLGNIFIAGG  247 (264)
Q Consensus       171 ~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gs  247 (264)
                      |+||.++. ..+.++++..||.++.+-|.|..++++.+..+++||+.++...-  ..+++....+.++.. +++.|++||
T Consensus       179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~s  257 (487)
T KOG0310|consen  179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGS  257 (487)
T ss_pred             EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecc
Confidence            99999987 67888999999999999999999999989999999998664432  222344556777776 478999999


Q ss_pred             CCCeEEEEEcCcceee
Q 024676          248 EDMWVHVFDFHTGEQI  263 (264)
Q Consensus       248 ~d~~v~vwd~~~g~~i  263 (264)
                      .|+.|++||+++.+.+
T Consensus       258 LD~~VKVfd~t~~Kvv  273 (487)
T KOG0310|consen  258 LDRHVKVFDTTNYKVV  273 (487)
T ss_pred             cccceEEEEccceEEE
Confidence            9999999998766543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.1e-29  Score=197.66  Aligned_cols=213  Identities=27%  Similarity=0.424  Sum_probs=178.2

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC------------C------ceEEeeeCCcCCEEEEEECC
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------G------DWIGTFEGHKGAVWSCCLDA   71 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~------------~------~~~~~~~~H~~~V~~v~~~~   71 (264)
                      ..+-.|+.+..+-+|+|   ||.++||||.|-+|+|.|++-            |      ..+++|=.|-++|..+.|+|
T Consensus       106 ~ylt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             EEEeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            34567999999999996   999999999999999998761            1      24678888999999999999


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCcEE---EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe--EeccCCC
Q 024676           72 NALFSASGSADFTAKLWDALTGDEK---HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSG  146 (264)
Q Consensus        72 ~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~  146 (264)
                      ....|++|++|++||++|......+   ..+....+|+++.|+|.|.+|+.|..-.++++||+++.+.-..  ....|.+
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            9999999999999999998654332   2345677999999999999999999999999999987643221  2235778


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec---CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeee
Q 024676          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK  222 (264)
Q Consensus       147 ~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~  222 (264)
                      .|.++.+++.+ .+.++++.||.|||||=-+++|+.++.   ....|.++.|+.||+|+.++ -|..+++|.+.++++++
T Consensus       263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence            99999998754 567788999999999999999998874   34679999999999998765 58899999999999988


Q ss_pred             EEec
Q 024676          223 GYNM  226 (264)
Q Consensus       223 ~~~~  226 (264)
                      .|..
T Consensus       342 ~YtG  345 (430)
T KOG0640|consen  342 EYTG  345 (430)
T ss_pred             EEec
Confidence            8864

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.5e-28  Score=214.32  Aligned_cols=226  Identities=17%  Similarity=0.221  Sum_probs=166.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--------eEEeeeCCcCCEEEEEECCCCcE-EEEec
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--------WIGTFEGHKGAVWSCCLDANALF-SASGS   80 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--------~~~~~~~H~~~V~~v~~~~~~~~-l~s~s   80 (264)
                      ..+.||.++|.+|+|+|.  ++++|++|+.|++|++|++.++.        .+..+.+|...|.+++|+|++.. ++|++
T Consensus        68 ~~L~gH~~~V~~lafsP~--~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPC--FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             EEEcCCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            456799999999999972  36799999999999999997542        34568899999999999998865 57999


Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEE-----Eec
Q 024676           81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA-----WLH  155 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~-----~~~  155 (264)
                      .|++|+|||+.++.....+.+...|.++.|+|++.+|++++.|+.+++||+++++.. .....|.+.+....     +.+
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs~  224 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLGG  224 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEcC
Confidence            999999999999987777778888999999999999999999999999999987654 33444555443322     235


Q ss_pred             CCCeEEEEeeCC---CeEEEEECCC-CceeEEecCCCC---EEEEEEcCCCcEEEE-eCCCcEEEEECCCcee--eeEEe
Q 024676          156 SDQTILSSCTDS---GGVRLWDARS-GKIVQTLETKSP---VTSAEVSRDGRYITT-ADGSSVKFWDANHFGL--VKGYN  225 (264)
Q Consensus       156 ~~~~~~~~~~~d---~~v~iwd~~~-~~~~~~~~~~~~---v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~--~~~~~  225 (264)
                      ++..+++++.++   ++|+|||+++ .+++..+.....   +......++|.++++ ..|+.|++|++.....  +..|.
T Consensus       225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~  304 (568)
T PTZ00420        225 DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK  304 (568)
T ss_pred             CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc
Confidence            556666666553   4799999995 556655543322   222333455776654 5689999999976532  23333


Q ss_pred             cCCCCceeeEcCC
Q 024676          226 MPCNTESASLEPK  238 (264)
Q Consensus       226 ~~~~~~~~~~~~~  238 (264)
                      ........++.|+
T Consensus       305 s~~p~~g~~f~Pk  317 (568)
T PTZ00420        305 SCSPFRSFGFLPK  317 (568)
T ss_pred             cCCCccceEEccc
Confidence            2333344556554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=5.3e-29  Score=216.38  Aligned_cols=238  Identities=26%  Similarity=0.402  Sum_probs=197.4

Q ss_pred             ec-cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe-eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           13 HG-HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        13 ~~-h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~-~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .+ |...+.+..|+     ..++++++.|.++.+|+..++..+.. +.||.+.|+++++..-+.++++||.|+++|+||+
T Consensus       204 ~~~~~~~~~~~q~~-----~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~  278 (537)
T KOG0274|consen  204 LGTDDHVVLCLQLH-----DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC  278 (537)
T ss_pred             cccCcchhhhheee-----cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence            44 55567777776     34789999999999999999988877 9999999999999987889999999999999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      .++.+...+. |...+.++...  ..++++|+.|.++++|++..+...... ..|.++|.++...   +.++++++.|++
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~---~~~lvsgs~d~~  352 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD---EPLLVSGSYDGT  352 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec---CCEEEEEecCce
Confidence            9999999987 88888777554  446788999999999999877654333 3489999999875   446777888899


Q ss_pred             EEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCCc-eeeeEEecCCCCceeeEcCCCCCEEEEec
Q 024676          170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGG  247 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs  247 (264)
                      |++||+++++++..+..+ ..|.++.+.+....+.++-|++|++||+++. +++.+++.+..... .+.. .+.++++++
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~-~l~~-~~~~Lvs~~  430 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS-SLLL-RDNFLVSSS  430 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccc-cccc-ccceeEecc
Confidence            999999999999999755 5699998887655666777999999999999 99998887655442 2222 478999999


Q ss_pred             CCCeEEEEEcCcceee
Q 024676          248 EDMWVHVFDFHTGEQI  263 (264)
Q Consensus       248 ~d~~v~vwd~~~g~~i  263 (264)
                      .|++|++||..+++.+
T Consensus       431 aD~~Ik~WD~~~~~~~  446 (537)
T KOG0274|consen  431 ADGTIKLWDAEEGECL  446 (537)
T ss_pred             ccccEEEeecccCcee
Confidence            9999999999988764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=202.44  Aligned_cols=248  Identities=19%  Similarity=0.268  Sum_probs=196.1

Q ss_pred             ceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCC
Q 024676            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSAD   82 (264)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D   82 (264)
                      ..+.-.+.+.||..+|..|.|+|   |.++|++++.|..+++||+.+|+....+. +|...+.+++|-||+..+++|+.|
T Consensus       257 ~~~kl~~tlvgh~~~V~yi~wSP---DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d  333 (519)
T KOG0293|consen  257 VHFKLKKTLVGHSQPVSYIMWSP---DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD  333 (519)
T ss_pred             cceeeeeeeecccCceEEEEECC---CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC
Confidence            33666677889999999999996   88999999999999999999999877664 577899999999999999999999


Q ss_pred             CeEEEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           83 FTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      +++.+||..... +..++  ....|.+++..++|+++++.+.|..|++++.++....  ..-....++.+.+.+.++.. 
T Consensus       334 r~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr--~lise~~~its~~iS~d~k~-  409 (519)
T KOG0293|consen  334 RTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR--GLISEEQPITSFSISKDGKL-  409 (519)
T ss_pred             CcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh--ccccccCceeEEEEcCCCcE-
Confidence            999999986543 33333  2245899999999999999999999999998654321  12234567888888766554 


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEecCCCC----EEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCC-Cceee
Q 024676          161 LSSCTDSGGVRLWDARSGKIVQTLETKSP----VTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESAS  234 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~  234 (264)
                      +.+.-.+.++++||++..+.++.+.++..    |.++.--.|..|++++ +|+.|+||+.++++++..+..+.. .+..+
T Consensus       410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS  489 (519)
T ss_pred             EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence            44555669999999997777666654322    3333223445788775 589999999999999988877654 55678


Q ss_pred             EcCCCCCEEEEecCCCeEEEEEcC
Q 024676          235 LEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       235 ~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +.|.+.++||+||.||+||||-..
T Consensus       490 wNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  490 WNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             cCCCCHHHhhccCCCCeEEEecCC
Confidence            889889999999999999999754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.6e-28  Score=206.99  Aligned_cols=240  Identities=20%  Similarity=0.306  Sum_probs=205.6

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-CcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      .-+...|+.+.|+|   +|++|++|..+|.+.|||....+.+.++.+ |...|-+++|.  ...+.+|++|+.|..+|+.
T Consensus       214 ~~~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  214 SFGEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             ecCCCceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence            33478999999996   999999999999999999999988899998 99999999998  6677899999999999998


Q ss_pred             CCcEEEE-e-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee--CC
Q 024676           92 TGDEKHS-F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DS  167 (264)
Q Consensus        92 ~~~~~~~-~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d  167 (264)
                      ..+.... + .|...|..+.|+++++++++|+.|+.+.+||....+ +...+..|.+.+..++|+|-...+||+|+  .|
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence            8764433 3 388899999999999999999999999999995544 34556678999999999998888888654  78


Q ss_pred             CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC---CCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEE
Q 024676          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD---GSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF  243 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  243 (264)
                      +.|++||..+++.+..+.....|.++.|++..+-++++.   ...|.||+..+...+..+..+.. ....++.| +|..+
T Consensus       368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i  446 (484)
T KOG0305|consen  368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETI  446 (484)
T ss_pred             cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEE
Confidence            999999999999999999999999999999986655543   46899999999888877776544 44566777 59999


Q ss_pred             EEecCCCeEEEEEcCc
Q 024676          244 IAGGEDMWVHVFDFHT  259 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~  259 (264)
                      ++|+.|.++++|++=.
T Consensus       447 ~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  447 VTGAADETLRFWNLFD  462 (484)
T ss_pred             EEecccCcEEeccccC
Confidence            9999999999998643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=3.8e-28  Score=192.41  Aligned_cols=247  Identities=17%  Similarity=0.180  Sum_probs=196.9

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      .+..+-||++.|.++.|+.   ||.+||||..+|.++||...++.....+..--+.+.=+.|+|....|+.|+.||.+-+
T Consensus        98 ~~~eltgHKDSVt~~~Fsh---dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm  174 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSH---DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM  174 (399)
T ss_pred             ceeEecCCCCceEEEEEcc---CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEE
Confidence            4556679999999999995   9999999999999999999999877777544445555899999999999999999999


Q ss_pred             EeCCCCc-EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC---------------------C
Q 024676           88 WDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------------------S  145 (264)
Q Consensus        88 wd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~---------------------~  145 (264)
                      |.+.++. ++.-..|..++++=.|.|+|+.++++..|++|++||..++..........                     .
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence            9998854 44444588999999999999999999999999999998765432221000                     0


Q ss_pred             ----------CCe-------------------EEEEEecC--CCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEE
Q 024676          146 ----------GSI-------------------RTVAWLHS--DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAE  194 (264)
Q Consensus       146 ----------~~i-------------------~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  194 (264)
                                +++                   .++.+.|.  .-.+++.++-||+|.|||+.+.+..+..++..+|..+.
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~  334 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK  334 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE
Confidence                      001                   11111111  11367778889999999999998888888888999999


Q ss_pred             EcCCCcEEEEeCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          195 VSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       195 ~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      |-+...++++..++.|+.||.|++.+..+|..+. .+..+++.| +.++++|+|.|++.+||++.
T Consensus       335 w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            9985566677789999999999999999998765 455677777 58999999999999999863

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.9e-28  Score=198.05  Aligned_cols=243  Identities=18%  Similarity=0.243  Sum_probs=198.5

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      .++.||...|+.+.|+|   +...++++|.|..|+||....-........|.++|..+..+|.+.|++++|.|++.-+.|
T Consensus       255 ~~~~Gh~kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd  331 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD  331 (506)
T ss_pred             hhccCcceEEEEEEecc---chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence            45589999999999997   677899999999999999877766667788999999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCC---eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           90 ALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        90 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      +.++..+....++.   .+++.+|||+|-++.+|..|+.+++||+.++. ....++.|.++|..++|+. ++++++++.+
T Consensus       332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsE-NGY~Lat~ad  409 (506)
T KOG0289|consen  332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSE-NGYWLATAAD  409 (506)
T ss_pred             ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEecc-CceEEEEEec
Confidence            99999888877642   47899999999999999999999999998766 3455667999999999875 5567778888


Q ss_pred             CCeEEEEECCCCceeEEecC--CCCEEEEEEcCCCcEEEEe-CCCcEEEEECC--CceeeeEEecCCCCceeeEcCCCCC
Q 024676          167 SGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN--HFGLVKGYNMPCNTESASLEPKLGN  241 (264)
Q Consensus       167 d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~  241 (264)
                      |+.|++||+|+-+...++..  ..++.++.|.+.|+++..+ ++=+|++++..  .+.++..+..+........+.....
T Consensus       410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq  489 (506)
T KOG0289|consen  410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ  489 (506)
T ss_pred             CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence            89999999999887776643  3469999999999998765 33344444432  5666776665554444444444578


Q ss_pred             EEEEecCCCeEEEEEc
Q 024676          242 IFIAGGEDMWVHVFDF  257 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~  257 (264)
                      +++++|-|...+++-+
T Consensus       490 ~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  490 YLASTSMDAILRLYAL  505 (506)
T ss_pred             EEeeccchhheEEeec
Confidence            9999999999988854

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.6e-29  Score=203.07  Aligned_cols=241  Identities=22%  Similarity=0.274  Sum_probs=201.6

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      ++..-++.|--++|..++|.+   ++.++++++.|+.+++|++...+...+|.||++.|.++.|......+++|+.|.++
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~---~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti  285 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDS---DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI  285 (459)
T ss_pred             hhhhhhhhccCCCcceeeecC---CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchh
Confidence            444445567778899999995   89999999999999999999999999999999999999999888779999999999


Q ss_pred             EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      |+||+....+..++-....++.++.+  ...+++|..|++||.||++++......  +..+.+.++..++++.. +.+++
T Consensus       286 K~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv--~~gg~vtSl~ls~~g~~-lLsss  360 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV--PLGGRVTSLDLSMDGLE-LLSSS  360 (459)
T ss_pred             hhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe--ecCcceeeEeeccCCeE-Eeeec
Confidence            99999998888887777777777776  456889999999999999876643332  34568999998876555 44558


Q ss_pred             CCCeEEEEECCCCceeEEecC-----CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC-CC--CceeeEc
Q 024676          166 DSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CN--TESASLE  236 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~-~~--~~~~~~~  236 (264)
                      .|.++++.|+++.+..+.+..     .+.++.+.|||++.|++++ .|+.|+||++.++++.+....+ ++  +.++.|.
T Consensus       361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~  440 (459)
T KOG0288|consen  361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN  440 (459)
T ss_pred             CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence            889999999999887776643     3468899999999998765 4899999999999988877653 33  5678888


Q ss_pred             CCCCCEEEEecCCCeEEEE
Q 024676          237 PKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vw  255 (264)
                      | .|+.+++++.++.+.+|
T Consensus       441 ~-sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  441 P-SGSGLLSADKQKAVTLW  458 (459)
T ss_pred             C-CCchhhcccCCcceEec
Confidence            8 58999999999999999

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=192.33  Aligned_cols=241  Identities=20%  Similarity=0.377  Sum_probs=195.4

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC-
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-   90 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~-   90 (264)
                      +.||++.|+.++-....|   .+.++|+|.+.+||.+++|.++.++.||.+.|+++.|++.+.+++|+|.|++..||.. 
T Consensus       144 ~~GHkDGiW~Vaa~~tqp---i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQP---ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA  220 (481)
T ss_pred             hcccccceeeehhhcCCc---ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence            469999999998876544   8899999999999999999999999999999999999999999999999999999972 


Q ss_pred             -----CCC--------c----------------------EEE----Ee-ecCCeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676           91 -----LTG--------D----------------------EKH----SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (264)
Q Consensus        91 -----~~~--------~----------------------~~~----~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d  130 (264)
                           ...        +                      .++    .+ .|...|.++.|-..++.++++++|++..+||
T Consensus       221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD  300 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD  300 (481)
T ss_pred             hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence                 110        0                      011    11 2556677888888899999999999999999


Q ss_pred             CCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEecCC-CCEEEEEEcCCCcEEEEeCCC
Q 024676          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLETK-SPVTSAEVSRDGRYITTADGS  208 (264)
Q Consensus       131 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~  208 (264)
                      +++++... .+..|..+++.++ .++.+.++++++.|.+.++||.+..- .+..++++ ..|.++.|..+.+.+.+++|+
T Consensus       301 VEtge~v~-~LtGHd~ELtHcs-tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDr  378 (481)
T KOG0300|consen  301 VETGEVVN-ILTGHDSELTHCS-THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDR  378 (481)
T ss_pred             eccCceec-cccCcchhccccc-cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCc
Confidence            99988654 4445677777666 45567788899999999999998432 34455654 459999999999999889999


Q ss_pred             cEEEEECCCc-eeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          209 SVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       209 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +|++||+++. .++.++......+.+..+. ++.+++.--.++.||+||+.
T Consensus       379 TvKvWdLrNMRsplATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  379 TVKVWDLRNMRSPLATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             eEEEeeeccccCcceeeecCCccceeEeec-CCceEEeccCCceEEEEecC
Confidence            9999999986 4577777766666666654 46688888899999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-28  Score=188.17  Aligned_cols=242  Identities=17%  Similarity=0.232  Sum_probs=189.3

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEe-----cCCCeEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-----SADFTAK   86 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~-----s~D~~v~   86 (264)
                      +.||++.|++|.-+.   +.++|+|||+|.++++||+++|+.+++++ -..+|+.+.|+.++.+++..     +.-+.|-
T Consensus        48 y~GHtGavW~~Did~---~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~  123 (327)
T KOG0643|consen   48 YDGHTGAVWCCDIDW---DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVS  123 (327)
T ss_pred             ecCCCceEEEEEecC---CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence            479999999998875   66799999999999999999999998887 34689999999999876544     3346899


Q ss_pred             EEeCCC-------CcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           87 LWDALT-------GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        87 iwd~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      ++|+..       .++...+ .+.+.++...|+|.++++++|..|+.|..||++++.........|...|+.+++++ +.
T Consensus       124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~  202 (327)
T KOG0643|consen  124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DR  202 (327)
T ss_pred             EEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-Cc
Confidence            999873       3333333 36678888999999999999999999999999987655454455777899999876 55


Q ss_pred             eEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCC---CcE------------EEEECCCceeeeE
Q 024676          159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG---SSV------------KFWDANHFGLVKG  223 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---~~i------------~iwd~~~~~~~~~  223 (264)
                      .++++++.|.+-++||.++.+++.++....|+++.+++|...+++.+.+   ..|            ++|++-..+.+..
T Consensus       203 T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr  282 (327)
T KOG0643|consen  203 TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR  282 (327)
T ss_pred             ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence            6777888889999999999999999999999999999997766554322   122            2233222233444


Q ss_pred             EecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          224 YNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       224 ~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ++.+.. .++.+++| +|..+++||+||+||+..++.
T Consensus       283 vkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  283 VKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccccccCcceeEECC-CCcccccCCCCceEEEEEecc
Confidence            444443 45677887 599999999999999997753

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.8e-27  Score=196.48  Aligned_cols=246  Identities=19%  Similarity=0.308  Sum_probs=189.7

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce------------------------------------
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------------------------------------   53 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~------------------------------------   53 (264)
                      .++-.|..+++-.+|+|   .|.|+|+|...|.||||+....+.                                    
T Consensus        53 ~iYtEH~~~vtVAkySP---sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg  129 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSP---SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG  129 (603)
T ss_pred             eeeccccceeEEEEeCC---CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence            34568999999999997   799999999999999998653111                                    


Q ss_pred             ----------EEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEee
Q 024676           54 ----------IGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGG  121 (264)
Q Consensus        54 ----------~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~  121 (264)
                                +..+.||...|+++.|.|..- +++|||.|.+|-+|+-...+-..++ +|.+.|+++.|+|+++++++++
T Consensus       130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g  209 (603)
T KOG0318|consen  130 HVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG  209 (603)
T ss_pred             EEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence                      234456777777777776554 3677777777777764443333343 3788999999999999999999


Q ss_pred             CCCcEEEeeCCCCCCCCeE--eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCC----EEEEEE
Q 024676          122 FEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP----VTSAEV  195 (264)
Q Consensus       122 ~d~~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----v~~~~~  195 (264)
                      .|+++.+||-.+++.....  ...|++.|..++|+|++.. +++++.|.++||||+.+++++.++.....    ...+.|
T Consensus       210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW  288 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW  288 (603)
T ss_pred             CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence            9999999999887754332  2368999999999987665 55667779999999999999988865332    333445


Q ss_pred             cCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          196 SRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       196 s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      . +..+++.+.+|+|.+++....+.++.+..+.. ..++...+ ++.+|.+||.||.|.-|+..+|.
T Consensus       289 q-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  289 Q-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGT  353 (603)
T ss_pred             e-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCcc
Confidence            5 66777778899999999999888877776544 45566666 57999999999999999987765

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.6e-28  Score=187.79  Aligned_cols=237  Identities=17%  Similarity=0.279  Sum_probs=175.8

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEE-eeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      -.+.|.+|+|+|  ....+|+++|.|++||+|+++. |..+. ....|.++|.+++|+.||..+++|+.|+.+|+||+.+
T Consensus        26 P~DsIS~l~FSP--~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   26 PEDSISALAFSP--QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             cccchheeEecc--ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            567899999999  3456888999999999999976 45443 3346999999999999999999999999999999999


Q ss_pred             CcEEEEeecCCeEEEEEECCCC--CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           93 GDEKHSFEHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ++....-.|..+|..+.|-+..  .+|+|||+|+++|.||.+.........  ....+.++....   .+++.+..++.|
T Consensus       104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~~---pm~vVata~r~i  178 (347)
T KOG0647|consen  104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVLY---PMAVVATAERHI  178 (347)
T ss_pred             CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhccC---ceeEEEecCCcE
Confidence            9888888899999999997755  489999999999999998655433332  233455544332   245555667999


Q ss_pred             EEEECCCCceeEE-e--cCCCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCceeeeEEecCCC------------Cceee
Q 024676          171 RLWDARSGKIVQT-L--ETKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN------------TESAS  234 (264)
Q Consensus       171 ~iwd~~~~~~~~~-~--~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~------------~~~~~  234 (264)
                      .+|.++.+..... +  ..+..+.+++..+|.. +++++-.|.+-|..+......+.|.+.|+            .++++
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            9999987653321 1  2345688888888764 45555567766665554322333333322            24567


Q ss_pred             EcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          235 LEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       235 ~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      |+|. -..|+|+|.||+..+||.+.
T Consensus       259 FhP~-hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  259 FHPV-HGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             eecc-cceEEEecCCceEEEecchh
Confidence            8885 55699999999999999653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=9.1e-28  Score=194.92  Aligned_cols=244  Identities=20%  Similarity=0.256  Sum_probs=190.8

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--e--------EEeeeCCcCCEEEEEECCCC-cEEEEecC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--W--------IGTFEGHKGAVWSCCLDANA-LFSASGSA   81 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~--------~~~~~~H~~~V~~v~~~~~~-~~l~s~s~   81 (264)
                      -.|.++|+.++|.|..|  +.+|+.+..+.+.|||..+-.  .        -..+.||++.=++++|++.. -.+++++.
T Consensus       121 i~h~gEVnRaRymPQnp--~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNP--NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             ccCCccchhhhhCCCCC--cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            36999999999999655  588889999999999986532  1        12678999888889999754 56899999


Q ss_pred             CCeEEEEeCCCCcE-------EEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCC-CCCCeEeccCCCCeEEE
Q 024676           82 DFTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTV  151 (264)
Q Consensus        82 D~~v~iwd~~~~~~-------~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~~  151 (264)
                      |++|.+||+.....       +..+ .|...|..++|+| +..++++++.|+.+.+||+++. .........|.++++++
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence            99999999876432       2222 3888999999999 5567888999999999999963 22334455688999999


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEecC-CCCEEEEEEcCCCc-EEE-EeCCCcEEEEECCCceee------
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHFGLV------  221 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~-~~~v~~~~~s~~~~-~l~-~~~~~~i~iwd~~~~~~~------  221 (264)
                      +|+|-+..++++++.|++|.+||+|.-+ ++++++. ...|..+.|||+.. .|+ ++.|+++.+||+..-...      
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            9999999999999999999999999854 6777765 45699999999874 444 456899999999753222      


Q ss_pred             --------eEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          222 --------KGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       222 --------~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                              -.+..+ .....+.+.|+..-.+++.++|+.+.||.+.
T Consensus       359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                    122222 1234567788878899999999999999875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1e-27  Score=205.15  Aligned_cols=234  Identities=17%  Similarity=0.310  Sum_probs=185.8

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC-----C
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-----G   93 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~-----~   93 (264)
                      +.+..|-|   .++++++|...|.+.++|+.+...+.++++|.+.|++++.+||+..++|||.|++||+||..-     +
T Consensus       415 ~l~~~Fvp---gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g  491 (888)
T KOG0306|consen  415 ILASKFVP---GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG  491 (888)
T ss_pred             EEEEEecC---CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence            33444443   445566666666666666666655666678999999999999999999999999999999531     1


Q ss_pred             cE--------EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           94 DE--------KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        94 ~~--------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      ..        .++++.+..|.++.++|++++|+.+-.|+++++|=+++-+.- -.+.+|.=++.++..+|+ ..++++|+
T Consensus       492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf-lsLYGHkLPV~smDIS~D-SklivTgS  569 (888)
T KOG0306|consen  492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF-LSLYGHKLPVLSMDISPD-SKLIVTGS  569 (888)
T ss_pred             ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee-eeecccccceeEEeccCC-cCeEEecc
Confidence            11        134456678999999999999999999999999988765432 344578889999998875 55788899


Q ss_pred             CCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCE
Q 024676          166 DSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNI  242 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  242 (264)
                      .|+.|+||-+.=|.|..++- +...|.++.|-|... |++++-|+.|+-||..++++++.+..+. ...+.+..| .|.+
T Consensus       570 ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~  648 (888)
T KOG0306|consen  570 ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSF  648 (888)
T ss_pred             CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCe
Confidence            99999999999999987764 556799999999875 5677889999999999999999887654 455667777 4999


Q ss_pred             EEEecCCCeEEEEEcC
Q 024676          243 FIAGGEDMWVHVFDFH  258 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~  258 (264)
                      ++++|.|..||+|..+
T Consensus       649 vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  649 VVSSSHDKSIRLWERT  664 (888)
T ss_pred             EEeccCCceeEeeecc
Confidence            9999999999999853

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=3.3e-27  Score=190.84  Aligned_cols=236  Identities=21%  Similarity=0.308  Sum_probs=196.0

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-E
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-E   95 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-~   95 (264)
                      ..+.++.-.|   ....+++|+.|..+.++|..+++.+.+|.||...|..+.++++...++++|.|..+++|...... +
T Consensus       220 pgi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  220 PGITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence            4566665554   34578999999999999999999999999999999999999999999999999999999976654 4


Q ss_pred             EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676           96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (264)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd  174 (264)
                      .....|..+|+.+..+|++.++++++.|+++-..|++++........ .....+++.++ ++++.++.++..|+.|+|||
T Consensus       297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwd  375 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWD  375 (506)
T ss_pred             cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEE
Confidence            44456999999999999999999999999999999988765433222 13345677765 45778899999999999999


Q ss_pred             CCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC--CceeeEcCCCCCEEEEecCCC
Q 024676          175 ARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDM  250 (264)
Q Consensus       175 ~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs~d~  250 (264)
                      +.++..+..|.. ..+|..++|+.||.++++ ++|+.|++||+|+.+..++|.....  ..+..|.. .|.+++.+|+|-
T Consensus       376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l  454 (506)
T KOG0289|consen  376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDL  454 (506)
T ss_pred             cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeeccee
Confidence            999988877864 568999999999999876 4567799999999998999988654  56677776 589999999998


Q ss_pred             eEEEEEc
Q 024676          251 WVHVFDF  257 (264)
Q Consensus       251 ~v~vwd~  257 (264)
                      +|++++-
T Consensus       455 ~Vy~~~k  461 (506)
T KOG0289|consen  455 QVYICKK  461 (506)
T ss_pred             EEEEEec
Confidence            8888763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.7e-28  Score=204.83  Aligned_cols=241  Identities=23%  Similarity=0.369  Sum_probs=191.5

Q ss_pred             cCCCee---eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc------eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           15 HSRPVV---DLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        15 h~~~v~---~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~------~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      |-..|.   ++..++  |.++||.||++||++++|+.....      .++.++.|.+.|..+..-.+++.++|+|.|-+|
T Consensus        20 n~~~v~~~~~Lq~da--~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV   97 (735)
T KOG0308|consen   20 NRNGVNITKALQLDA--PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV   97 (735)
T ss_pred             ccccccchhhccccC--CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence            445555   455554  678899999999999999886532      366788899999999999999999999999999


Q ss_pred             EEEeCCCCc--EEEEe-ecCCeEEEEEE-CCCCCEEEEeeCCCcEEEeeCCCCCC---------CCeEec-cCCCCeEEE
Q 024676           86 KLWDALTGD--EKHSF-EHKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNRPDA---------PPREVG-NSSGSIRTV  151 (264)
Q Consensus        86 ~iwd~~~~~--~~~~~-~~~~~v~~~~~-~~~~~~l~s~~~d~~i~~~d~~~~~~---------~~~~~~-~~~~~i~~~  151 (264)
                      |+|+...+.  ++.++ .|.++|.++++ .++..++++|+.|+.|++||++++..         ...... ++..++.++
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence            999988763  44444 49999999999 88999999999999999999986521         111112 456678888


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCN  229 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~  229 (264)
                      +.++.+ .++++|+-.+-+++||.++++.+-.+.++ ..|..+..++||+. +++++|++|++||+...+++.+|..+..
T Consensus       178 A~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  178 AMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             ecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence            877654 67778887799999999999877666554 56999999999965 5567799999999999999999988766


Q ss_pred             Cc-eeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          230 TE-SASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       230 ~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      .. +....+ .=..|.+|+.|+.|+.=|+.+
T Consensus       257 ~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  257 GVWALQSSP-SFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             ceEEEeeCC-CcceEEecCCCCcEEecccCC
Confidence            53 222333 346799999999999888765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.1e-27  Score=178.45  Aligned_cols=237  Identities=19%  Similarity=0.291  Sum_probs=184.6

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      .+.+.||-.+|..++-+   .|...+++|+.|+.+.+||+++|+.++.|+||.+.|+.++|..+...+++||.|.++|+|
T Consensus        52 iktYsghG~EVlD~~~s---~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~w  128 (307)
T KOG0316|consen   52 IKTYSGHGHEVLDAALS---SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLW  128 (307)
T ss_pred             eeeecCCCceeeecccc---ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEE
Confidence            44567999999988766   478889999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCC--cEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           89 DALTG--DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        89 d~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      |..+.  ++++.+. ....|.++...  +..+++|+.||++|.||++.+.....-   ...+|+++++++++...++++.
T Consensus       129 DCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  129 DCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             EcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeec
Confidence            98775  4566553 45567777654  567899999999999999987643222   3458999999988777777655


Q ss_pred             CCCeEEEEECCCCceeEEecCCC-CEE--EEEEcCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCCC--ceeeEcCCC
Q 024676          166 DSGGVRLWDARSGKIVQTLETKS-PVT--SAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKL  239 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~~~-~v~--~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~  239 (264)
                       |+++++.|-.+|+.+..++.+. .-.  ...++....+ +.+++|+.+.+||+.....+..+..+..+  ..+.++|..
T Consensus       204 -~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  204 -DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             -cceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence             5999999999999888776542 222  2233333344 55677999999999999888888776554  355677766


Q ss_pred             CCEEEEecCCCeEEEEE
Q 024676          240 GNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       240 ~~~~~~gs~d~~v~vwd  256 (264)
                      .+++++++  +.+..|-
T Consensus       283 ~~f~~A~~--~~~~~~~  297 (307)
T KOG0316|consen  283 DDFITATG--HGDLFWY  297 (307)
T ss_pred             cceeEecC--Cceecee
Confidence            66665554  3466774

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.9e-27  Score=182.53  Aligned_cols=236  Identities=18%  Similarity=0.279  Sum_probs=178.5

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      ++.|..|.|+|   .++.|+.+|+||++++|++...++...|. |++++.+++|.+ ...+++|+-||.||++|+.++..
T Consensus        13 ~d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence            56799999995   56678888999999999999887666666 899999999987 45678999999999999999998


Q ss_pred             EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676           96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      ...-.|..+++++.+.+....+++|++|++|++||.+..... .. ......|.++...  +. .|+.+..+..|.+||+
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~-~~-~d~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDL  162 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV-GT-FDQGKKVYCMDVS--GN-RLVVGTSDRKVLIYDL  162 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc-cc-cccCceEEEEecc--CC-EEEEeecCceEEEEEc
Confidence            888889999999999999899999999999999998752221 11 2234477777643  33 4555556699999999


Q ss_pred             CCCceeE---EecCCCCEEEEEEcCCCc-EEEEeCCCc--EEEEECCCceeeeEEecCC------------CCceeeEcC
Q 024676          176 RSGKIVQ---TLETKSPVTSAEVSRDGR-YITTADGSS--VKFWDANHFGLVKGYNMPC------------NTESASLEP  237 (264)
Q Consensus       176 ~~~~~~~---~~~~~~~v~~~~~s~~~~-~l~~~~~~~--i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~  237 (264)
                      |+...-.   .-..+.++.++++-|++. |++++-+|.  +.++|.+....-+.|.+.|            +..++.|+|
T Consensus       163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            9876433   223456799999999764 555665665  4566665222223333332            234667777


Q ss_pred             CCCCEEEEecCCCeEEEEEcCccee
Q 024676          238 KLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       238 ~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      . ...|+|||.||.|.+||..+.+.
T Consensus       243 ~-~~tfaTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  243 I-HGTFATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             c-cceEEecCCCceEEEccCcchhh
Confidence            5 66799999999999999876553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.6e-28  Score=184.36  Aligned_cols=212  Identities=21%  Similarity=0.361  Sum_probs=176.0

Q ss_pred             CcceeecceEe-eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEe
Q 024676            2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASG   79 (264)
Q Consensus         2 ~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~   79 (264)
                      |..+-+.|+.. +.|+.+|..|.|++  ..++.++++|.|++|++|+..-..-+.+|.||...|+...|+|. ...++++
T Consensus        89 d~~~~s~Pi~~~kEH~~EV~Svdwn~--~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~  166 (311)
T KOG0277|consen   89 DLTMPSKPIHKFKEHKREVYSVDWNT--VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA  166 (311)
T ss_pred             ccCCCCcchhHHHhhhhheEEecccc--ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence            34445556544 68999999999998  46778889999999999999888889999999999999999984 5788999


Q ss_pred             cCCCeEEEEeCCC-CcEEEEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676           80 SADFTAKLWDALT-GDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (264)
Q Consensus        80 s~D~~v~iwd~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  157 (264)
                      |.|+++++||+.. |+.+....|...+.++.|+. +...++||+.|+.||.||++.-+.+...+..|.-.|..+.|+|..
T Consensus       167 Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~  246 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH  246 (311)
T ss_pred             cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcch
Confidence            9999999999876 45555555888999999988 667888999999999999998777777777888899999999998


Q ss_pred             CeEEEEeeCCCeEEEEECCCCc-eeEEecCCCC-EEEEEEcCC-CcEE-EEeCCCcEEEEEC
Q 024676          158 QTILSSCTDSGGVRLWDARSGK-IVQTLETKSP-VTSAEVSRD-GRYI-TTADGSSVKFWDA  215 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~~-v~~~~~s~~-~~~l-~~~~~~~i~iwd~  215 (264)
                      ..++++++.|-++||||...+. ++....+++. +..+.||+- ...+ .++.|..+.+|+.
T Consensus       247 ~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  247 ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            8999999999999999998654 4555565554 777888864 2344 4577999999983

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=5.2e-29  Score=203.55  Aligned_cols=208  Identities=22%  Similarity=0.367  Sum_probs=168.5

Q ss_pred             ceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeCCC-CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEE
Q 024676           52 DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT-GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRI  128 (264)
Q Consensus        52 ~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~  128 (264)
                      +.+.++.||...|.++.|.| .+.++++++.|+.|+||++.. +.++++|. |..+|..++|++++..++|++.|+.+++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            34678899999999999999 778889999999999999987 77888885 8899999999999999999999999999


Q ss_pred             eeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcE-EEEeC
Q 024676          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRY-ITTAD  206 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~-l~~~~  206 (264)
                      ||+++|......  .....+.++.+.|++.+++++|+.|+.|+.||+|+++.++.+.. -..|+.+.|-++|+. +++++
T Consensus       285 wDtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  285 WDTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            999998765443  34557888999998878888888889999999999998888854 467999999999965 55677


Q ss_pred             CCcEEEEECCCceeee--------------------------------EEe-----------------cCCCCceeeEcC
Q 024676          207 GSSVKFWDANHFGLVK--------------------------------GYN-----------------MPCNTESASLEP  237 (264)
Q Consensus       207 ~~~i~iwd~~~~~~~~--------------------------------~~~-----------------~~~~~~~~~~~~  237 (264)
                      ++.++||+.+..-.++                                .|.                 ...-.....|+|
T Consensus       363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            8999999986422110                                000                 001112334555


Q ss_pred             CCCCEEEEecCCCeEEEEEcCccee
Q 024676          238 KLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       238 ~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                       +|++|++|..||.+.+||.++-+.
T Consensus       443 -DG~~l~SGdsdG~v~~wdwkt~kl  466 (503)
T KOG0282|consen  443 -DGRTLCSGDSDGKVNFWDWKTTKL  466 (503)
T ss_pred             -CCCeEEeecCCccEEEeechhhhh
Confidence             699999999999999999987654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=6.8e-27  Score=198.50  Aligned_cols=233  Identities=22%  Similarity=0.351  Sum_probs=183.6

Q ss_pred             eeccCCCeee-eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           12 CHGHSRPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        12 ~~~h~~~v~~-~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      +.+|.+.|.. +.|.+  .++-.|++|++|..+.+|...+..++++|.||+..|-+++...++. ++|||.|.++|+|..
T Consensus        53 ~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI  129 (745)
T ss_pred             cccCcceeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence            4577787776 88876  3555689999999999999999999999999999999988877777 899999999999986


Q ss_pred             CCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ...... ...|+.+|+.+..-|++ .++|||.|++||+|.-.   .....+..|+.-++.++..++..  +++|+.||.|
T Consensus       130 ~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~I  202 (745)
T KOG0301|consen  130 GELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSI  202 (745)
T ss_pred             hhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceE
Confidence            543211 33589999999998888 78899999999999853   23455566899999999987543  6678899999


Q ss_pred             EEEECCCCceeEEecC-CCCEEEEEEcCC-CcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC
Q 024676          171 RLWDARSGKIVQTLET-KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~-~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~  248 (264)
                      ++|++ +|+++..+.. .+-+.++...++ +..+++++|++++||+..  ++++.+..|....-.+..-..|+ +++|++
T Consensus       203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEecc
Confidence            99999 6777776654 456999995555 455667889999999977  77888887764333322222365 788889


Q ss_pred             CCeEEEEEcC
Q 024676          249 DMWVHVFDFH  258 (264)
Q Consensus       249 d~~v~vwd~~  258 (264)
                      ||.||||-.+
T Consensus       279 DG~VrVfT~~  288 (745)
T KOG0301|consen  279 DGRVRVFTVD  288 (745)
T ss_pred             CceEEEEEec
Confidence            9999999755

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.9e-26  Score=186.54  Aligned_cols=246  Identities=17%  Similarity=0.268  Sum_probs=199.3

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE----Ee------------e--eCCcCCEEEEEEC
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GT------------F--EGHKGAVWSCCLD   70 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~----~~------------~--~~H~~~V~~v~~~   70 (264)
                      +.+...|..++.+|+++|   +..+..+++.|++|.=|++.+|.-.    ..            .  ++|...|.+++++
T Consensus       135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence            455678999999999986   8889999999999999998887522    11            1  2788899999999


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeE
Q 024676           71 ANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR  149 (264)
Q Consensus        71 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~  149 (264)
                      +|+++++||+.|..|.||+..+.+.+..+. |..+|.+++|-..-..|++++.|+.+++|+++.... ...+..|++.|.
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~  290 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVL  290 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCcccee
Confidence            999999999999999999999999888864 888999999988888899999999999999975443 344556788888


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN  229 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~  229 (264)
                      .+..+..+. .++++..|+++++|++.....+--..+...+.+++|-.+..|++++++|.|-+|++-+.+++.+++.+.+
T Consensus       291 ~IdaL~reR-~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  291 GIDALSRER-CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             eechhcccc-eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc
Confidence            888776544 5666778899999999655444333445579999999888888889999999999999888877764322


Q ss_pred             -------------CceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          230 -------------TESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       230 -------------~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                                   ..+++..+ +.++|++||-+|.||+|-+..|
T Consensus       370 v~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  370 VIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCC
Confidence                         12344455 6899999999999999988776

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=3.9e-27  Score=184.70  Aligned_cols=239  Identities=16%  Similarity=0.227  Sum_probs=201.7

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      -|..+|.|+.|+-   |..+||+|+.||.|++|.+.+|.+++.|. .|+..|.++.|+.|+..+.++|-|.++||--+.+
T Consensus       261 Mmd~aVlci~FSR---DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS  337 (508)
T KOG0275|consen  261 MMDDAVLCISFSR---DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS  337 (508)
T ss_pred             ecccceEEEeecc---cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence            3678899999994   77899999999999999999999999997 7999999999999999999999999999999999


Q ss_pred             CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      |+++..++ |.+.|+...|.++|..+++++.|+++++|+..+.+...... .+..-+++.+-..|.+...++.|...++|
T Consensus       338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv  417 (508)
T KOG0275|consen  338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV  417 (508)
T ss_pred             chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence            99888876 88899999999999999999999999999998887755443 23445788888888888888888888999


Q ss_pred             EEEECCCCceeEEecC----CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE
Q 024676          171 RLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (264)
                      .|-++. |+.++++..    .....++.+||-|.++-+ ++|+.+.-+....+..-++...++.-.....+.+-...+++
T Consensus       418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAs  496 (508)
T KOG0275|consen  418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLAS  496 (508)
T ss_pred             EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhh
Confidence            999986 667777742    245667789999998755 77899999999999888888776653332233334678999


Q ss_pred             ecCCCeEEEEE
Q 024676          246 GGEDMWVHVFD  256 (264)
Q Consensus       246 gs~d~~v~vwd  256 (264)
                      .++|+.+++|.
T Consensus       497 YsEDgllKLWk  507 (508)
T KOG0275|consen  497 YSEDGLLKLWK  507 (508)
T ss_pred             hcccchhhhcC
Confidence            99999999994

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-24  Score=170.10  Aligned_cols=237  Identities=16%  Similarity=0.208  Sum_probs=180.0

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeC--CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~--d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      -++..+..+.|-.   ..+.++.+|.  |.+||.-++.+++.++.|.||+..|.+++.+|-+..++|+|.|++||+||++
T Consensus        54 skkyG~~~~~Fth---~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR  130 (311)
T KOG1446|consen   54 SKKYGVDLACFTH---HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR  130 (311)
T ss_pred             cccccccEEEEec---CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec
Confidence            3444677777764   2234455555  8899999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC-CCCCeEecc---CCCCeEEEEEecCCCeEEEEeeCC
Q 024676           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-DAPPREVGN---SSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      ..++.-.+... .-..++|+|+|-++|++.....|++||++.- +.+...+.-   -..+...+.|+++|..++++ ...
T Consensus       131 ~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~  208 (311)
T KOG1446|consen  131 VKKCQGLLNLS-GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNA  208 (311)
T ss_pred             CCCCceEEecC-CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCC
Confidence            77655544322 2234689999999888887779999999865 233333322   35678889999988887776 455


Q ss_pred             CeEEEEECCCCceeEEecCCC----CEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCC--CCceeeEcCCCC
Q 024676          168 GGVRLWDARSGKIVQTLETKS----PVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC--NTESASLEPKLG  240 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~  240 (264)
                      +.+.+.|.-+|..+.++....    -..+.+|+||++|+.++. |++|.+|+++++..+..+..+.  ......|.|+ -
T Consensus       209 s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~-~  287 (311)
T KOG1446|consen  209 SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR-Y  287 (311)
T ss_pred             CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc-e
Confidence            899999999999888775432    235788999999987765 6999999999999998887742  2334556664 4


Q ss_pred             CEEEEecCCCeEEEEEcC
Q 024676          241 NIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       241 ~~~~~gs~d~~v~vwd~~  258 (264)
                      .+|++++  ..+-+|=.+
T Consensus       288 ~mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  288 AMFVSAS--SNLVFWLPD  303 (311)
T ss_pred             eeeeecC--ceEEEEecc
Confidence            5666665  558888443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.2e-26  Score=178.42  Aligned_cols=247  Identities=22%  Similarity=0.308  Sum_probs=193.5

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEe------CCC------------------------------
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------GET------------------------------   50 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~------~~~------------------------------   50 (264)
                      ++...+.||.+.|++|+|+|   .+.+++++|.|++..||.      +.+                              
T Consensus       181 ~CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD  257 (481)
T KOG0300|consen  181 ACLATYTGHTGSVNSIKFHN---SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD  257 (481)
T ss_pred             cceeeecccccceeeEEecc---ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence            34556689999999999996   889999999999999985      111                              


Q ss_pred             C----ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCc
Q 024676           51 G----DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKI  125 (264)
Q Consensus        51 ~----~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~  125 (264)
                      +    .++..|.||.+.|.++.|-..++.++|+|.|.+..+||+++++++..+. |.+..+.|+-+|..+++++.+.|.+
T Consensus       258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT  337 (481)
T KOG0300|consen  258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT  337 (481)
T ss_pred             CceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce
Confidence            0    0134578999999999999999999999999999999999999888774 8888999999999999999999999


Q ss_pred             EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC-ceeEEecCCCCEEEEEEcCCCcEEEE
Q 024676          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT  204 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~  204 (264)
                      .++||.+..-.....+-.|...+.++.|.-++  -++++++|.+||+||++.- .++.++...++++.++++..+..|+.
T Consensus       338 FRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  338 FRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             eEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEe
Confidence            99999974333333445678889998887544  4678899999999999874 47888888899999999999888877


Q ss_pred             e-CCCcEEEEECCCceeeeEEe----cCC-CCceeeEc--CCCCCEEEEecCCCeEEEEEcCc
Q 024676          205 A-DGSSVKFWDANHFGLVKGYN----MPC-NTESASLE--PKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       205 ~-~~~~i~iwd~~~~~~~~~~~----~~~-~~~~~~~~--~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      - +++.|++||+...+.-+.-.    .+. ...+.++.  ++ -.-|.++|-|+.+.-|+..+
T Consensus       416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp-~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP-ACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc-ccccccccccceeeeeEecc
Confidence            5 45799999997655432211    111 12233332  22 23477889999999998754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.7e-26  Score=198.77  Aligned_cols=199  Identities=22%  Similarity=0.355  Sum_probs=164.1

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDA   90 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~   90 (264)
                      +.||++.|..|.|+    ..++|+++|+|++||+|.+...++++.|. |.+.|.||+|+| |..|++|||-|+.||||++
T Consensus       365 f~GHt~DILDlSWS----Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI  439 (712)
T KOG0283|consen  365 FKGHTADILDLSWS----KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI  439 (712)
T ss_pred             hhccchhheecccc----cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeec
Confidence            36999999999999    56799999999999999999999999998 999999999998 6789999999999999999


Q ss_pred             CCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccC------CCCeEEEEEecCCCeEEEE
Q 024676           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNS------SGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~------~~~i~~~~~~~~~~~~~~~  163 (264)
                      ...+...-......|++++|.|+|+..+.|+.+|.+++|+...-+.... .+..+      ...|+.+.++|.+...+++
T Consensus       440 ~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV  519 (712)
T KOG0283|consen  440 SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV  519 (712)
T ss_pred             CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence            8887766666778999999999999999999999999999865433221 11111      2369999999876654444


Q ss_pred             eeCCCeEEEEECCCCceeEEecCC---CCEEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676          164 CTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~-~~~~~i~iwd~  215 (264)
                      .+.|..|||+|.+..+.+..+++.   ..-....|+.||++|++ ++|..|.+|+.
T Consensus       520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            466799999999888877777642   23456789999999876 45789999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=8.9e-26  Score=186.20  Aligned_cols=248  Identities=19%  Similarity=0.245  Sum_probs=179.2

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce----EEeee-CCcCCEEEEEECCCCcEEEEecCCCe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW----IGTFE-GHKGAVWSCCLDANALFSASGSADFT   84 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~----~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~   84 (264)
                      +.+.+|+..|.++++.|   .|-.|++||.|.+|++||......    .+.+. ....+|++++|++.+..++..+..-.
T Consensus       161 i~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             EeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            34578999999999996   888999999999999999875421    12222 23458999999999988777777778


Q ss_pred             EEEEeCCCCcEEEE-------------eecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCCeEec-----cCC
Q 024676           85 AKLWDALTGDEKHS-------------FEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVG-----NSS  145 (264)
Q Consensus        85 v~iwd~~~~~~~~~-------------~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-----~~~  145 (264)
                      .+|+|-...+....             ..|...+++.+|+|. ...+++++.|+++|+||++........+.     ...
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            99999544332221             126667999999994 56789999999999999986554333322     223


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--eEEe-c---CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCc
Q 024676          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTL-E---TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHF  218 (264)
Q Consensus       146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~-~---~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~  218 (264)
                      -++..++|++++.. ++++..||.|.+||.++...  ...+ .   ....|+++.||++|++|++ +.|+++++||+++.
T Consensus       318 v~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             cCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            45788899987665 56666779999999865432  2222 2   2346999999999998876 67899999999986


Q ss_pred             -eeeeEEec---CCCCceeeEcCCCCCEEEEecC------CCeEEEEEcCccee
Q 024676          219 -GLVKGYNM---PCNTESASLEPKLGNIFIAGGE------DMWVHVFDFHTGEQ  262 (264)
Q Consensus       219 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~------d~~v~vwd~~~g~~  262 (264)
                       +++..+..   .......+|+| ..+++++|.+      -+++.+||..+-+.
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             ccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceee
Confidence             44544432   23334566777 4778888764      56788998776554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.7e-25  Score=172.45  Aligned_cols=235  Identities=19%  Similarity=0.233  Sum_probs=179.8

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc--EEEEecCCC
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADF   83 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~--~l~s~s~D~   83 (264)
                      ...|+....|.+||.++.|+.   ||..+++|+.|+++++||+.+++ +..+..|.++|..+.|-+...  .|+|||.|+
T Consensus        62 ~~~~ka~~~~~~PvL~v~Wsd---dgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK  137 (347)
T KOG0647|consen   62 QLVPKAQQSHDGPVLDVCWSD---DGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK  137 (347)
T ss_pred             cccchhhhccCCCeEEEEEcc---CCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEeccccc
Confidence            345677789999999999995   89999999999999999999995 557888999999999977554  799999999


Q ss_pred             eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccCCCCeEEEEEecCCCeEEE
Q 024676           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      ++|+||+++..++.++...+.+.+...  ....++.+..++.|.+|+|+.+..... ...+.+-.+++++.+.+.+.+++
T Consensus       138 TlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al  215 (347)
T KOG0647|consen  138 TLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL  215 (347)
T ss_pred             ceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe
Confidence            999999999999999888877776543  345778888999999999976543322 22334556888888877766655


Q ss_pred             EeeCCCeEEEEECCCCce--eEEecC----------CCCEEEEEEcCCC-cEEEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676          163 SCTDSGGVRLWDARSGKI--VQTLET----------KSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCN  229 (264)
Q Consensus       163 ~~~~d~~v~iwd~~~~~~--~~~~~~----------~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~  229 (264)
                      + +-.|.+.|-.+..+..  -.+++.          -..|++++|+|.. .+++.++||++.+||......++++.....
T Consensus       216 G-siEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q  294 (347)
T KOG0647|consen  216 G-SIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ  294 (347)
T ss_pred             e-eecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence            4 5559999887766422  122221          1358999999985 556678899999999988877888765444


Q ss_pred             Cc-eeeEcCCCCCEEEEecC
Q 024676          230 TE-SASLEPKLGNIFIAGGE  248 (264)
Q Consensus       230 ~~-~~~~~~~~~~~~~~gs~  248 (264)
                      +. ..+|.. .|.+|+.+-.
T Consensus       295 pItcc~fn~-~G~ifaYA~g  313 (347)
T KOG0647|consen  295 PITCCSFNR-NGSIFAYALG  313 (347)
T ss_pred             ccceeEecC-CCCEEEEEee
Confidence            44 445554 5888886543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=7.3e-24  Score=174.37  Aligned_cols=243  Identities=16%  Similarity=0.150  Sum_probs=180.4

Q ss_pred             eccCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDA   90 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~   90 (264)
                      .+|.. +..+.|+|   +|+.| ++++.++.+++||..+++.+..+..+.. +..++|+|++..+ ++++.|+.+++||+
T Consensus        28 ~~~~~-~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~  102 (300)
T TIGR03866        28 PVGQR-PRGITLSK---DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI  102 (300)
T ss_pred             ECCCC-CCceEECC---CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            34443 56789986   77765 6778899999999999988777765544 4678999999866 45667899999999


Q ss_pred             CCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCC-cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      .++..+..+++...+..++++|++++++++..++ .+.+||.++.+......  .......++|++++..+++++..++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCE
Confidence            9887777776555678899999999999888764 56778987654322221  22345667888888777777666799


Q ss_pred             EEEEECCCCceeEEecCC--------CCEEEEEEcCCCcEEE--EeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCC
Q 024676          170 VRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL  239 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~--~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (264)
                      |++||+++++.+..+...        .....+.++|+++++.  .+.++.+.+||+++++.+........+....+.|+ 
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-  259 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPD-  259 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCC-
Confidence            999999999876654321        1234688999998743  34456899999998887766655555667788875 


Q ss_pred             CCEEEEe-cCCCeEEEEEcCcceee
Q 024676          240 GNIFIAG-GEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       240 ~~~~~~g-s~d~~v~vwd~~~g~~i  263 (264)
                      +++|+++ +.++.|++||+.+++.+
T Consensus       260 g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       260 EKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEE
Confidence            6666664 67999999999998864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.7e-25  Score=182.11  Aligned_cols=231  Identities=21%  Similarity=0.328  Sum_probs=184.9

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      +|-+.|.+++-+|   ||+|||+|+.|..+.||+..+++.++.|.+|++.|.+++|-.....++++|.|++|++|++...
T Consensus       200 ~h~keil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  200 GHVKEILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             cccceeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            8999999998874   9999999999999999999999999999999999999999888888899999999999999876


Q ss_pred             cEEE-EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676           94 DEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus        94 ~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      ..+. .|.|+..|..+....-++.+.+|+.|+++++|++...  ....+..+.+.+-|++|.++.  .+++|+++|.|.+
T Consensus       277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIAL  352 (479)
T ss_pred             HHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEE
Confidence            5443 4579999998877777777777789999999999532  233444567899999998543  4667889999999


Q ss_pred             EECCCCceeEEecC-------------CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCc----eeeeEEecCCCCceee
Q 024676          173 WDARSGKIVQTLET-------------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF----GLVKGYNMPCNTESAS  234 (264)
Q Consensus       173 wd~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~----~~~~~~~~~~~~~~~~  234 (264)
                      |++.+-+++.....             +..|++++..|+..++++++ ++.|++|-+..+    +++..+.+....+++.
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~  432 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLA  432 (479)
T ss_pred             eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEE
Confidence            99998887765421             12688999999998887765 799999998765    4455555566667788


Q ss_pred             EcCCCCC-EEEEecCCCeE
Q 024676          235 LEPKLGN-IFIAGGEDMWV  252 (264)
Q Consensus       235 ~~~~~~~-~~~~gs~d~~v  252 (264)
                      |+++ |+ +++..|....+
T Consensus       433 f~~s-gk~ivagiGkEhRl  450 (479)
T KOG0299|consen  433 FSNS-GKRIVAGIGKEHRL  450 (479)
T ss_pred             EccC-CCEEEEeccccccc
Confidence            7775 55 66655554444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1.1e-24  Score=168.85  Aligned_cols=203  Identities=23%  Similarity=0.340  Sum_probs=165.1

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc------eE---------EeeeCCcCCEEEEEECC-CCcEEE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WI---------GTFEGHKGAVWSCCLDA-NALFSA   77 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~------~~---------~~~~~H~~~V~~v~~~~-~~~~l~   77 (264)
                      -|-+.|+.|.-.|  ..|+|+++|++||.+-+||++.-.      ++         ..-.+|+-.|.++.|-| |.-.+.
T Consensus        41 ~HgGsvNsL~id~--tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   41 PHGGSVNSLQIDL--TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             cCCCccceeeecc--ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            3889999998887  468999999999999999986432      11         11146888999999977 556778


Q ss_pred             EecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCC---CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe
Q 024676           78 SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (264)
Q Consensus        78 s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~  154 (264)
                      |+|-|+++|+||+++.+....|.-+..|..-+++|-   ..++++|..|-.+++-|+.++.... .+..|.+.|..+.|+
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH-~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH-TLSGHRDGVLAVEWS  197 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee-eeccccCceEEEEec
Confidence            999999999999999998889988899999999993   4466677778899999999887654 445688999999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEECCCC-ceeEEec---------------CCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCC
Q 024676          155 HSDQTILSSCTDSGGVRLWDARSG-KIVQTLE---------------TKSPVTSAEVSRDGRYIT-TADGSSVKFWDANH  217 (264)
Q Consensus       155 ~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~---------------~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~  217 (264)
                      |..++++++++.||.||+||+|.. -|...+.               +...++.++|+.++.+++ .+.|..+++|+..+
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            999999999999999999999865 2333221               224689999999998765 56788999999987


Q ss_pred             ce
Q 024676          218 FG  219 (264)
Q Consensus       218 ~~  219 (264)
                      ++
T Consensus       278 G~  279 (397)
T KOG4283|consen  278 GR  279 (397)
T ss_pred             Cc
Confidence            64

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-26  Score=198.12  Aligned_cols=240  Identities=17%  Similarity=0.258  Sum_probs=191.2

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC---CceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCC
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~---~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~   93 (264)
                      ....|+|+.  -+.++|||++..|.|.+||+..   .+.+..|..|+-.|.++.|++.. .+++|||+||+||+||++..
T Consensus        89 S~~DVkW~~--~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQ--LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhccccc--chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence            344678873  4778999999999999999987   45667889999999999999866 56899999999999999888


Q ss_pred             cEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           94 DEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        94 ~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      ....++. ....|+.|.|+| .+..++++...|.+++||++.+..-...+..|.+++.++.|.| ++.++++|+.|++|+
T Consensus       167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vk  245 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVK  245 (839)
T ss_pred             cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEE
Confidence            7666654 456799999999 5677888888899999999987665566678999999999998 677889999999999


Q ss_pred             EEECCCCc--eeEEecCCCCEEEEEEcCCCcE-EEEe---CCCcEEEEECCC-ceeeeEEecCCCCc-eeeEcCCCCCEE
Q 024676          172 LWDARSGK--IVQTLETKSPVTSAEVSRDGRY-ITTA---DGSSVKFWDANH-FGLVKGYNMPCNTE-SASLEPKLGNIF  243 (264)
Q Consensus       172 iwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~-l~~~---~~~~i~iwd~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~  243 (264)
                      |||..+.+  .+++++.-.++..+.|-|...+ |+++   .|..|++||++. |-+-.+|.-+.... .+.|..-+...|
T Consensus       246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l  325 (839)
T KOG0269|consen  246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL  325 (839)
T ss_pred             EEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence            99998665  4667777889999999998754 4443   467899999964 44445554443332 345554456789


Q ss_pred             EEecCCCeEEEEEcCcc
Q 024676          244 IAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g  260 (264)
                      .++|.|++|....++++
T Consensus       326 ~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  326 WSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             EeecCccHHHHhhhhcc
Confidence            99999999887766544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=181.11  Aligned_cols=231  Identities=26%  Similarity=0.386  Sum_probs=178.9

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCce---E----------------Ee--eeCCcCCEEEEEECCCC-cEEEEecCCCeEEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDW---I----------------GT--FEGHKGAVWSCCLDANA-LFSASGSADFTAKL   87 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~---~----------------~~--~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~i   87 (264)
                      -|+|+|.|..|..|.|||+.-...   .                +.  -++|++.|.+++|...- ..|||||.|++|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            478999999999999998753210   0                11  23699999999988654 56799999999999


Q ss_pred             EeCCCCcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           88 WDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        88 wd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      ||+.++++..++. |.+.|.++.|+| ...+|++|++|+++++.|.+......... ...+.+..++|.|.....+.++.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEec
Confidence            9999999999988 788999999999 56889999999999999998543322222 24678999999998888888889


Q ss_pred             CCCeEEEEECCCC-ceeEEecC-CCCEEEEEEcCCCc-EEE-EeCCCcEEEEECCCcee--eeE--EecCCCCceeeEcC
Q 024676          166 DSGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHFGL--VKG--YNMPCNTESASLEP  237 (264)
Q Consensus       166 ~d~~v~iwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~-~l~-~~~~~~i~iwd~~~~~~--~~~--~~~~~~~~~~~~~~  237 (264)
                      +||+|+-+|+|.. +++.+++. ..+|.++.+++.-. +++ ++.++.+++|++..-+.  ++.  +.+.- ..+.++.|
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r-l~c~~~~~  428 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR-LHCFALDP  428 (463)
T ss_pred             CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc-eeecccCC
Confidence            9999999999975 78888864 46799999987653 344 45689999999865332  322  22221 23445556


Q ss_pred             CCCCEEEEecCCCeEEEEEcCccee
Q 024676          238 KLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       238 ~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .....++.||+.+.+++||..++..
T Consensus       429 ~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  429 DVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             CcceEEEecCccceEEEeecccChh
Confidence            5667889999999999999887654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=3.4e-25  Score=188.24  Aligned_cols=235  Identities=19%  Similarity=0.349  Sum_probs=191.6

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE--eeeCCcCCEEE-EEECC-CCcEEEEecCCCeE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWS-CCLDA-NALFSASGSADFTA   85 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~--~~~~H~~~V~~-v~~~~-~~~~l~s~s~D~~v   85 (264)
                      ..++||+..|.+++..    ++-.++++|+|+++++|+...++++.  .+.+|.+.|.. +++.+ ++-.+++|+.|.++
T Consensus         8 ~~l~gH~~DVr~v~~~----~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVT----DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             EEeccCccchheeEec----CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            4568999999999876    45578999999999999988777654  57889998877 88874 55568999999999


Q ss_pred             EEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        86 ~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      .+|...+..+..++ .|+..|.++....++. ++|||+|.+.++|-..  +.. .....|+.+|+.+..+|++  .++++
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~-~~l~gH~asVWAv~~l~e~--~~vTg  157 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV-YSLQGHTASVWAVASLPEN--TYVTG  157 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhh-cccCCcchheeeeeecCCC--cEEec
Confidence            99999999888876 4899999998877776 8999999999999764  332 2345688999999999876  56677


Q ss_pred             eCCCeEEEEECCCCceeEEecCCC-CEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCE
Q 024676          165 TDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNI  242 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (264)
                      +.|.+||+|.-  ++.++++..|. -|..+++-+++.|++++.|+.|++|++ +++++..+..+.. ..++.... .+..
T Consensus       158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~  233 (745)
T KOG0301|consen  158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGL  233 (745)
T ss_pred             cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCe
Confidence            78899999976  66777887665 489999999999999999999999999 6777766665544 33555455 3678


Q ss_pred             EEEecCCCeEEEEEcC
Q 024676          243 FIAGGEDMWVHVFDFH  258 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~  258 (264)
                      ++++|+|+++++|+..
T Consensus       234 Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  234 IVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEEecCCceEEEeecC
Confidence            9999999999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=3e-24  Score=163.73  Aligned_cols=247  Identities=17%  Similarity=0.222  Sum_probs=201.5

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      +.+-...+||.+.|-++.|+|..||  .+++++.|+.|++||..+++++.......+.+ .+.|+|++.+++.++.|-.|
T Consensus        54 ~~~~~~~~gh~~svdql~w~~~~~d--~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~i  130 (313)
T KOG1407|consen   54 FRKELVYRGHTDSVDQLCWDPKHPD--LFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRI  130 (313)
T ss_pred             hhhhhcccCCCcchhhheeCCCCCc--ceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccE
Confidence            3344456799999999999997765  78999999999999999999988887655554 48899999999999999999


Q ss_pred             EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      .+.|..+.+.....+....++-++|+-++.+++....-|++.|.....-+.. +.+..|.....|+.+.|.+. ++++|+
T Consensus       131 t~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-~si~AH~snCicI~f~p~Gr-yfA~Gs  208 (313)
T KOG1407|consen  131 TFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-QSIKAHPSNCICIEFDPDGR-YFATGS  208 (313)
T ss_pred             EEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc-cccccCCcceEEEEECCCCc-eEeecc
Confidence            9999999888888888888999999987777777777799999887654433 44556777888888888766 566777


Q ss_pred             CCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEE
Q 024676          166 DSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (264)
                      .|..+.+||+...-|++.+. ...||..+.||-||++|+++ +|..|-|-+++++..+..++......+.+++|+ ..+|
T Consensus       209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk-~~LL  287 (313)
T KOG1407|consen  209 ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK-RPLL  287 (313)
T ss_pred             ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC-Ccee
Confidence            88999999999888888774 56789999999999999875 578899999999998888877667778899996 5667


Q ss_pred             EEecCC---------CeEEEEEcC
Q 024676          244 IAGGED---------MWVHVFDFH  258 (264)
Q Consensus       244 ~~gs~d---------~~v~vwd~~  258 (264)
                      +.+..|         +.|++|-+.
T Consensus       288 AyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  288 AYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eEEecCCCCccccccceeEEecCC
Confidence            766554         566666543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=8.6e-26  Score=176.08  Aligned_cols=207  Identities=21%  Similarity=0.371  Sum_probs=164.3

Q ss_pred             EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC------------CC------cEEEE-eecCCeEEEEEECCCCC
Q 024676           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL------------TG------DEKHS-FEHKHIVRACAFSEDTH  115 (264)
Q Consensus        55 ~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~------------~~------~~~~~-~~~~~~v~~~~~~~~~~  115 (264)
                      ..+..|++++++.+|++||.+++|||.|-.|||.|++            .+      ..+++ +.|.++|+.+.|+|-..
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            4567799999999999999999999999999999975            11      12333 46889999999999999


Q ss_pred             EEEEeeCCCcEEEeeCCCCCCCCeE-eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe----cCCCCE
Q 024676          116 LLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPV  190 (264)
Q Consensus       116 ~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v  190 (264)
                      +|++++.|+++++||..+...+... .....-++.++.|.|.+++++ .+.+.-++++||++|-+|...-    ++...|
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccccce
Confidence            9999999999999998755432111 112344788999888776554 5677789999999999987544    234679


Q ss_pred             EEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          191 TSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       191 ~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +++.+++.|++.++ +-||.|+|||--.++|++++.-.   ....++.|.. +++++++.|.|..|++|.+.+|.++
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceE
Confidence            99999999987554 56999999999999999988542   2334445554 6999999999999999999999875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.3e-25  Score=183.77  Aligned_cols=250  Identities=20%  Similarity=0.279  Sum_probs=182.2

Q ss_pred             CCcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE------------eeeCCcCCEEEEE
Q 024676            1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG------------TFEGHKGAVWSCC   68 (264)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~------------~~~~H~~~V~~v~   68 (264)
                      ||-.+-.+--+.....+.|+.+.|+|   .|.++++.+..-+++++|-...+...            .-+||.+.+.+.+
T Consensus       199 Mdas~~~fr~l~P~E~h~i~sl~ys~---Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~  275 (641)
T KOG0772|consen  199 MDASMRSFRQLQPCETHQINSLQYSV---TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC  275 (641)
T ss_pred             ccccchhhhccCcccccccceeeecC---CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc
Confidence            34444343333345777899999997   56677777777788898865433322            2268999999999


Q ss_pred             ECCCCc-EEEEecCCCeEEEEeCCCCc-EEEEeec------CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC--C
Q 024676           69 LDANAL-FSASGSADFTAKLWDALTGD-EKHSFEH------KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--P  138 (264)
Q Consensus        69 ~~~~~~-~l~s~s~D~~v~iwd~~~~~-~~~~~~~------~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~  138 (264)
                      |+|+.+ .++|+|.|+++||||+.... .+..+.+      .-+++.|+|+|+++++++|+.||.|.+|+.++....  .
T Consensus       276 whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~  355 (641)
T KOG0772|consen  276 WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM  355 (641)
T ss_pred             cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce
Confidence            999764 57899999999999997653 3344432      236889999999999999999999999997543322  2


Q ss_pred             eEeccCCC--CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEec---CCCCEEEEEEcCCCcEEEEeC------
Q 024676          139 REVGNSSG--SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE---TKSPVTSAEVSRDGRYITTAD------  206 (264)
Q Consensus       139 ~~~~~~~~--~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~---~~~~v~~~~~s~~~~~l~~~~------  206 (264)
                      .....|..  .|+++.|++++.. |++-+.|+++|+||++..+ ++....   ...+-..++|||+.++|+++.      
T Consensus       356 ~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~  434 (641)
T KOG0772|consen  356 KVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM  434 (641)
T ss_pred             EeeeccCCCCceeEEEeccccch-hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence            22234544  8999999987665 4455666899999999764 454432   234567889999999987652      


Q ss_pred             -CCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676          207 -GSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       207 -~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                       .+.+.+||-.+++.+..+.+.. .+....|+|+.++++ +|+.||.++||
T Consensus       435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsgdG~~~vy  484 (641)
T KOG0772|consen  435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSGDGTAHVY  484 (641)
T ss_pred             CCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecCCCceEEE
Confidence             2469999999999998888753 455678999877654 55668999987

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=4e-25  Score=179.62  Aligned_cols=205  Identities=20%  Similarity=0.285  Sum_probs=167.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-------eEEeeeCCcCCEEEEEECCCC-cEEEEecC
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIGTFEGHKGAVWSCCLDANA-LFSASGSA   81 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-------~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~   81 (264)
                      +.+.||+++=.+|.|++..+  -+|++|+.|+.+.+||+....       ....|.+|++.|..++|++.. ..+++++.
T Consensus       171 l~L~gH~~eg~glsWn~~~~--g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d  248 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQE--GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD  248 (422)
T ss_pred             eEEEeecccccccccccccc--eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence            47789999877899998653  478999999999999986542       245789999999999999855 56799999


Q ss_pred             CCeEEEEeCCC--CcEEE-EeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676           82 DFTAKLWDALT--GDEKH-SFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (264)
Q Consensus        82 D~~v~iwd~~~--~~~~~-~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  157 (264)
                      |+.+.|||+++  .++.. ...|..+|++++|+| ++.+|||||.|+++.+||+|.-......+..|...+..+.|+|..
T Consensus       249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence            99999999995  33222 335889999999999 667888899999999999998877777888899999999999999


Q ss_pred             CeEEEEeeCCCeEEEEECCCCceeE------------Ee---cCCCCEEEEEEcCCCcEEE--EeCCCcEEEEECC
Q 024676          158 QTILSSCTDSGGVRLWDARSGKIVQ------------TL---ETKSPVTSAEVSRDGRYIT--TADGSSVKFWDAN  216 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~~~~~~------------~~---~~~~~v~~~~~s~~~~~l~--~~~~~~i~iwd~~  216 (264)
                      ..++++++.|+.+.+||+..-...+            .|   .+...|+.+.|+|+.....  .++|+.++||...
T Consensus       329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999999999999996522111            12   2235689999999986643  3568899999974

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=5.2e-24  Score=189.05  Aligned_cols=250  Identities=17%  Similarity=0.295  Sum_probs=187.4

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEe--CCCCcEEEeCCC------------CceEEeeeCCcCCEEEEEECCCC
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGET------------GDWIGTFEGHKGAVWSCCLDANA   73 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s--~d~~v~i~~~~~------------~~~~~~~~~H~~~V~~v~~~~~~   73 (264)
                      +|.-..-+...|-.|.-+|   ||..++||+  .|+.++||+...            .+.+.+...|.+.|.|+.|++||
T Consensus         5 kp~wv~H~~~~IfSIdv~p---dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG   81 (942)
T KOG0973|consen    5 KPTWVNHNEKSIFSIDVHP---DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG   81 (942)
T ss_pred             cccccccCCeeEEEEEecC---CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC
Confidence            3433333555677887775   999999999  999999997643            12345667899999999999999


Q ss_pred             cEEEEecCCCeEEEEeCCC----------Cc--------EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC
Q 024676           74 LFSASGSADFTAKLWDALT----------GD--------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~----------~~--------~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~  134 (264)
                      ++||+||.|+.|.||+...          |.        ....+ .|...|..++|+|++.+|++++.|++|-+||..+.
T Consensus        82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence            9999999999999999762          00        12222 38889999999999999999999999999999887


Q ss_pred             CCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-------CCCEEEEEEcCCCcEEEEeC-
Q 024676          135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTSAEVSRDGRYITTAD-  206 (264)
Q Consensus       135 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~-  206 (264)
                      + ....+..|.+.+-.+.|-|-++ ++++-++|++|+||...+....+.+..       ..-...+.|||||++|++.. 
T Consensus       162 ~-~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  162 E-LLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             e-eeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            4 3455567888999999988765 577778899999999777555554432       23478899999999998753 


Q ss_pred             --C--CcEEEEECCCceeeeEEecCC-CCceeeEcCC------C------CC----EEEEecCCCeEEEEEcCccee
Q 024676          207 --G--SSVKFWDANHFGLVKGYNMPC-NTESASLEPK------L------GN----IFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       207 --~--~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~------~------~~----~~~~gs~d~~v~vwd~~~g~~  262 (264)
                        +  ..+.|.+=.+++.-..+-.|. ......|.|.      .      +.    .+|+||.|+++-||....-.+
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence              2  368888777776555554433 3334444322      0      11    678999999999999765544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.4e-23  Score=154.24  Aligned_cols=237  Identities=19%  Similarity=0.312  Sum_probs=180.5

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC------CCc-------eE--EeeeCCcCCEEEEEECCCCcEEEE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE------TGD-------WI--GTFEGHKGAVWSCCLDANALFSAS   78 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~------~~~-------~~--~~~~~H~~~V~~v~~~~~~~~l~s   78 (264)
                      ..+-.|.+++|+|   .|.+-+.||..++.||.-..      .+.       .+  +.-+-|++.|++.+|+|+|.+++|
T Consensus        30 ~dsqairav~fhp---~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   30 EDSQAIRAVAFHP---AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             cchhheeeEEecC---CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            3666899999997   77788999999999995321      110       01  112348999999999999999999


Q ss_pred             ecCCCeEEEEeCCCCcE------EEEeecCCeEEEEEECC----CCCEEEEeeC-CCcEEEeeCCCCCCCCeEeccCCCC
Q 024676           79 GSADFTAKLWDALTGDE------KHSFEHKHIVRACAFSE----DTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGS  147 (264)
Q Consensus        79 ~s~D~~v~iwd~~~~~~------~~~~~~~~~v~~~~~~~----~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~  147 (264)
                      ||.|++||+-..+...+      +..--|...|+.++|-.    .+.+|++++. |..|.+-|-.+++. ......|.+.
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtgh  185 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGH  185 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCccc
Confidence            99999999976654322      22223778899999843    3567777654 56677667665553 4555678888


Q ss_pred             eEEE-EEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC--------CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCC
Q 024676          148 IRTV-AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANH  217 (264)
Q Consensus       148 i~~~-~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~  217 (264)
                      |..+ .|   ++..+++++.|.+||+||+|-..++..+..        .+.|..+++.|.|++++++. |....+||++.
T Consensus       186 ilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  186 ILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             EEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence            7664 33   356888999999999999999988876632        25689999999999999875 78899999999


Q ss_pred             ceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          218 FGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       218 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ++.++.|.-+. ...+..|+| ..+|++++|.|..|++=|+.
T Consensus       263 ~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  263 GRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecc
Confidence            99999986544 456667776 68999999999999999873

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=5.3e-24  Score=173.40  Aligned_cols=255  Identities=20%  Similarity=0.212  Sum_probs=198.2

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCCEEEEEECCCC-cEEEEecC
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSASGSA   81 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~   81 (264)
                      ..+.+.+-|.+.|.+++|+|.. ..+++|+|+.-|+|-+||..+.    +-+..|..|+++|.++.|+|.+ ..+++.|.
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~-~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTE-NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             eecceeEecccceEEEEecccC-cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence            3455667899999999999953 4579999999999999999532    3456788899999999999865 67889999


Q ss_pred             CCeEEEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           82 DFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      ||++|.-|++.+.....+.   .......+.++.+...++.+..=|...+||++...........|...|..++++|...
T Consensus       256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            9999999998764222222   1224566777777777777776679999999887654444445677999999999999


Q ss_pred             eEEEEeeCCCeEEEEECCCCc-----eeEEecCCCCEEEEEEcCCC-cEEEEeCCCcEEEEECC----CceeeeEEecCC
Q 024676          159 TILSSCTDSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN----HFGLVKGYNMPC  228 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~----~~~~~~~~~~~~  228 (264)
                      +++++++-|++++|||+|.-.     .+..+.+..+|+++.|||.+ .+++++.|..|+|||..    ..+...++.+++
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~  415 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN  415 (498)
T ss_pred             hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence            999999999999999998632     25667788889999999986 66667889999999994    445555555543


Q ss_pred             CC------ceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          229 NT------ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       229 ~~------~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ..      ..+.|.|+ ..+++.|-.-+.|.|+|-+.|+++
T Consensus       416 ~t~RwlT~fKA~W~P~-~~li~vg~~~r~IDv~~~~~~q~v  455 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPD-YNLIVVGRYPRPIDVFDGNGGQMV  455 (498)
T ss_pred             cccccccchhheeCCC-ccEEEEeccCcceeEEcCCCCEEe
Confidence            32      35678884 678899999999999998877754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.1e-24  Score=163.10  Aligned_cols=241  Identities=20%  Similarity=0.242  Sum_probs=180.3

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeeeCCcCCEEEEEECC--CCcEEEEecCCCeEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK   86 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~~H~~~V~~v~~~~--~~~~l~s~s~D~~v~   86 (264)
                      .-.|.+-|..+...   =.|+.|||+|.|++|+|+.++.+   .++.+|.||++||+.++|.+  -|.+|||+|.||.|.
T Consensus         7 dt~H~D~IHda~lD---yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLD---YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhHhhhh---hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            35688888764333   25899999999999999988764   46789999999999999976  689999999999999


Q ss_pred             EEeCCCCcEEEEe---ecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCC-CC-CCeEeccCCCCeEEEEEecC---
Q 024676           87 LWDALTGDEKHSF---EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRP-DA-PPREVGNSSGSIRTVAWLHS---  156 (264)
Q Consensus        87 iwd~~~~~~~~~~---~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~-~~-~~~~~~~~~~~i~~~~~~~~---  156 (264)
                      ||.-.+++=....   .|...|++++|.|.  +-.|+.++.||.|.+.+.+.. .. .......|...+++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            9998887422222   37788999999884  567888899999999987654 22 22344567778899999875   


Q ss_pred             C----------CeEEEEeeCCCeEEEEECCCCce--eEEecC-CCCEEEEEEcCCC----cEEE-EeCCCcEEEEECCCc
Q 024676          157 D----------QTILSSCTDSGGVRLWDARSGKI--VQTLET-KSPVTSAEVSRDG----RYIT-TADGSSVKFWDANHF  218 (264)
Q Consensus       157 ~----------~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~-~~~v~~~~~s~~~----~~l~-~~~~~~i~iwd~~~~  218 (264)
                      +          ..-+++++-|..|+||+...++-  ...++. ...|+.+++.|.-    ..++ ++.|+++-||-.+..
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence            2          13477777789999999988742  223444 4568999999974    2344 467999999987632


Q ss_pred             -e-----eeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          219 -G-----LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       219 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                       +     +++.  +++..-+.+++. .|.+|+.++.|..|.+|..+
T Consensus       244 ~e~wk~tll~~--f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  244 YEPWKKTLLEE--FPDVVWRVSWSL-SGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cCccccccccc--CCcceEEEEEec-cccEEEEecCCcEEEEEEeC
Confidence             1     2222  344455667776 48899999999999999643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=2e-22  Score=165.87  Aligned_cols=228  Identities=17%  Similarity=0.172  Sum_probs=167.6

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEE
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF  110 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~  110 (264)
                      +.+++++.|+.+++||..+++.+..+.+|.. +..++|++++..+ ++++.|+.+++||..+++....+.....+..+++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~   80 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL   80 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence            5788999999999999999998888887654 6789999999876 6778899999999998887766654444677889


Q ss_pred             CCCCCEEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCC
Q 024676          111 SEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP  189 (264)
Q Consensus       111 ~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~  189 (264)
                      +|+++.++++ +.++.+++||+.+.+... .+ ........++++|++..++++..+...+.+||.++++.+........
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKVLA-EI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR  158 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeEEe-Ee-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC
Confidence            9999877654 568999999997654322 22 12234567888887766555444334678889999887665544445


Q ss_pred             EEEEEEcCCCcEEE-Ee-CCCcEEEEECCCceeeeEEecCC--------CCceeeEcCCCCCE-EEEecCCCeEEEEEcC
Q 024676          190 VTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLGNI-FIAGGEDMWVHVFDFH  258 (264)
Q Consensus       190 v~~~~~s~~~~~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~gs~d~~v~vwd~~  258 (264)
                      +..+.++|+++++. ++ .++.|++||+++++.++.+....        .+..+.++++ +++ +++.+.++.+.+||..
T Consensus       159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-g~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD-GKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC-CCEEEEEcCCCCeEEEEECC
Confidence            67889999998764 44 37899999999988777664321        1234566765 554 5555667789999998


Q ss_pred             cceee
Q 024676          259 TGEQI  263 (264)
Q Consensus       259 ~g~~i  263 (264)
                      +++.+
T Consensus       238 ~~~~~  242 (300)
T TIGR03866       238 TYEVL  242 (300)
T ss_pred             CCcEE
Confidence            87754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=1.2e-23  Score=186.71  Aligned_cols=245  Identities=17%  Similarity=0.242  Sum_probs=184.8

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-------C-----------ceEEeeeCCcCCEEEEEECCCCc
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------G-----------DWIGTFEGHKGAVWSCCLDANAL   74 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-------~-----------~~~~~~~~H~~~V~~v~~~~~~~   74 (264)
                      ..|..+|.|++|+|   ||++||+||.|+.|.||....       |           +.+..+.+|.+.|..++|+|++.
T Consensus        66 ~~h~~sv~CVR~S~---dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~  142 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSP---DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS  142 (942)
T ss_pred             ccccCceeEEEECC---CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence            57999999999996   999999999999999997662       1           13567899999999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-----CCCCe
Q 024676           75 FSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-----SSGSI  148 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~i  148 (264)
                      +++++|-|++|.|||..+.+.+..++ |...|-++.|+|-|+++++-+.|+++++|.+.+-......-.+     .....
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f  222 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF  222 (942)
T ss_pred             EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence            99999999999999999997777665 8899999999999999999999999999996542221111111     11234


Q ss_pred             EEEEEecCCCeEEEEeeCC---CeEEEEECCCCceeEEe-cCCCCEEEEEEcC--------CC-------c--EEEE-eC
Q 024676          149 RTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTL-ETKSPVTSAEVSR--------DG-------R--YITT-AD  206 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~--------~~-------~--~l~~-~~  206 (264)
                      .-+.|+|++.++.+.-+-+   -.+.|.+-.+-+.-..+ .|+.++.++.|+|        ||       .  .+++ +.
T Consensus       223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            5578999887766543322   25777776655544444 4667899999986        11       1  2333 46


Q ss_pred             CCcEEEEECCCceeeeEE-ec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          207 GSSVKFWDANHFGLVKGY-NM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       207 ~~~i~iwd~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      |+.|-||....-+++-.. ++ ...+.-.+|+| +|..|.++|.||+|.+..+...|
T Consensus       303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence            899999998655543222 12 23445678888 48999999999999999987543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.7e-23  Score=154.11  Aligned_cols=197  Identities=20%  Similarity=0.313  Sum_probs=151.9

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEE--eCCCCce--------------------------------------
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLR--NGETGDW--------------------------------------   53 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~--~~~~~~~--------------------------------------   53 (264)
                      -|.+.|.|.+|+|   +|.+|++||.|++|++-  +.++...                                      
T Consensus        87 hhkgsiyc~~ws~---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   87 HHKGSIYCTAWSP---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             ccCccEEEEEecC---ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            5899999999996   99999999999999883  3322111                                      


Q ss_pred             ------------EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--------cCCeEEEEEECCC
Q 024676           54 ------------IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--------HKHIVRACAFSED  113 (264)
Q Consensus        54 ------------~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~  113 (264)
                                  ...++||++-|.++ ++-++-.+++||+|++||+||+.-..++.++.        ....|..++..|.
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps  242 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS  242 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence                        12234566666544 23346788999999999999998887777664        2357999999999


Q ss_pred             CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc--ee---EEecCCC
Q 024676          114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IV---QTLETKS  188 (264)
Q Consensus       114 ~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~---~~~~~~~  188 (264)
                      +++|++|..|...-+||++.++.. +.+.+|...+.++.|+| +.+++.+|+.|..|++-|+...-  ++   ..-++..
T Consensus       243 grll~sg~~dssc~lydirg~r~i-q~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd  320 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGGRMI-QRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD  320 (350)
T ss_pred             cceeeeccCCCceEEEEeeCCcee-eeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence            999999999999999999977654 55567889999999886 66788899999999999997532  12   1224566


Q ss_pred             CEEEEEEcCCC-cEEEEeCCCcEEEEECC
Q 024676          189 PVTSAEVSRDG-RYITTADGSSVKFWDAN  216 (264)
Q Consensus       189 ~v~~~~~s~~~-~~l~~~~~~~i~iwd~~  216 (264)
                      .+..+.|+|.. .|++++.|+++.+|-+.
T Consensus       321 k~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  321 KAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEEecCccceeeeccCcceEEEeccC
Confidence            78888999987 46666778999999753

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.3e-24  Score=162.10  Aligned_cols=205  Identities=23%  Similarity=0.375  Sum_probs=163.4

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE--eeeCCcCCEEEEEECCC--CcEEEEecCCCeEE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDAN--ALFSASGSADFTAK   86 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~--~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v~   86 (264)
                      -+.||++||+.++|... .-|..||++|.||.|+||.-+.|++.+  .+..|++.|++++|.|.  |..|+++|.||.|.
T Consensus        51 ~L~Gh~GPVwqv~wahP-k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs  129 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHP-KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS  129 (299)
T ss_pred             EecCCCCCeeEEeeccc-ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence            34799999999999853 378999999999999999999987643  45689999999999885  56789999999999


Q ss_pred             EEeCCCC-c---EEEEeecCCeEEEEEECCC---C-----------CEEEEeeCCCcEEEeeCCCCCCCCeE-eccCCCC
Q 024676           87 LWDALTG-D---EKHSFEHKHIVRACAFSED---T-----------HLLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGS  147 (264)
Q Consensus        87 iwd~~~~-~---~~~~~~~~~~v~~~~~~~~---~-----------~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~  147 (264)
                      |.+..+. .   .+....|+-.|++++|.|.   +           +.|++|+.|+.+++|+.+.++..... +..|.+-
T Consensus       130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw  209 (299)
T KOG1332|consen  130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW  209 (299)
T ss_pred             EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence            9987654 1   2233458888999999996   4           67999999999999998876554433 5678899


Q ss_pred             eEEEEEecCC---CeEEEEeeCCCeEEEEECCCCce--eEEe--cCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECC
Q 024676          148 IRTVAWLHSD---QTILSSCTDSGGVRLWDARSGKI--VQTL--ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDAN  216 (264)
Q Consensus       148 i~~~~~~~~~---~~~~~~~~~d~~v~iwd~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~  216 (264)
                      ++.++|.|.-   ...+++|+.||+|.||..+....  ..++  ....++..+.||+.|.+|+.+ .|+.+.+|--.
T Consensus       210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9999999865   35799999999999998763211  1122  234568999999999998765 46889999754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.3e-23  Score=159.97  Aligned_cols=243  Identities=21%  Similarity=0.273  Sum_probs=178.4

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce------------------------------------E
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------------------------------------I   54 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~------------------------------------~   54 (264)
                      +++||.+.|.+++|+.   ||++|+|++.|++||+|++.+.+.                                    +
T Consensus        81 ~LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            3479999999999994   999999999999999998753110                                    0


Q ss_pred             Ee----------------------e-eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeec-CCeEEEEEE
Q 024676           55 GT----------------------F-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAF  110 (264)
Q Consensus        55 ~~----------------------~-~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~v~~~~~  110 (264)
                      .-                      | +-|+-.|..+.....+.+++|+|.|..|.||+.. |+.+..+.. ....+..+.
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            00                      0 1134455556666778999999999999999998 666666542 334567889


Q ss_pred             CCCCCEEEEeeCCCcEEEeeC---CCCCC----CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc----
Q 024676          111 SEDTHLLLTGGFEKILRIFDL---NRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK----  179 (264)
Q Consensus       111 ~~~~~~l~s~~~d~~i~~~d~---~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~----  179 (264)
                      +|+|+++++++..--+++|++   +.++.    ...++..|+..+...+|+++.. .+++.+.||++||||..-.-    
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~q  315 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQ  315 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCC
Confidence            999999999999999999985   22221    1235567888999999987654 56677889999999975321    


Q ss_pred             ---eeEEec-----CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec--CCCCceeeEcCCCCCEEEEecCC
Q 024676          180 ---IVQTLE-----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCNTESASLEPKLGNIFIAGGED  249 (264)
Q Consensus       180 ---~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gs~d  249 (264)
                         .+....     .......+.++|+|+.|+.+.+..++++..+.++....+.-  ...+.++++.+ +|++++++| |
T Consensus       316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-d  393 (420)
T KOG2096|consen  316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-D  393 (420)
T ss_pred             CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-c
Confidence               111110     11233479999999999999999999999998776555532  33456778887 589999987 7


Q ss_pred             CeEEEEEcCcc
Q 024676          250 MWVHVFDFHTG  260 (264)
Q Consensus       250 ~~v~vwd~~~g  260 (264)
                      +.+++..-..|
T Consensus       394 r~vrv~~ntpg  404 (420)
T KOG2096|consen  394 RYVRVIRNTPG  404 (420)
T ss_pred             eeeeeecCCCc
Confidence            89999874444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=6.2e-23  Score=176.08  Aligned_cols=243  Identities=20%  Similarity=0.247  Sum_probs=194.8

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      ..||-..|..+.++.   +...+++ ++.+++++|+..++++++++..  +.+.+..|-|.+.++++|...|.+.++|+.
T Consensus       369 ~~GHR~dVRsl~vS~---d~~~~~S-ga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSS---DSILLAS-GAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             eccchhheeEEEeec---Cceeeee-cCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEee
Confidence            469999999999984   4444444 4456899999999999999964  378899999999999999999999999999


Q ss_pred             CCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC----CCC-------CeEeccCCCCeEEEEEecCCCe
Q 024676           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP----DAP-------PREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~----~~~-------~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      +...+.+. .|...+..++.+|+++.+++||.|.++++||..-.    ...       ..........+.++.++|++..
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            88755554 48999999999999999999999999999996311    101       1112233567899999987664


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCC-ceeeEc
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLE  236 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~  236 (264)
                       ++.+--|.+|+||=+.+.+...++ .+.=||.|+..|||+++++++ .|..|++|=+.-+.|.+.+..+... .+..|.
T Consensus       523 -LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  523 -LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL  601 (888)
T ss_pred             -EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence             555566799999999998865544 566789999999999988765 5899999999999999988776554 566777


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCccee
Q 024676          237 PKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      | ..++|.++|.|+.|+.||-..-++
T Consensus       602 P-~~~~FFt~gKD~kvKqWDg~kFe~  626 (888)
T KOG0306|consen  602 P-KTHLFFTCGKDGKVKQWDGEKFEE  626 (888)
T ss_pred             c-cceeEEEecCcceEEeechhhhhh
Confidence            7 489999999999999998655444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=9.7e-23  Score=162.59  Aligned_cols=241  Identities=18%  Similarity=0.254  Sum_probs=178.5

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC----------------CceEEeeeCCcCCEEEEEECCCC-cE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------------GDWIGTFEGHKGAVWSCCLDANA-LF   75 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~----------------~~~~~~~~~H~~~V~~v~~~~~~-~~   75 (264)
                      -+|.+.++.++-++.. +.-++++=+..|.|.||++..                .+.+.++.+|++.=++++|+|-. -.
T Consensus       148 i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             cccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            4789999998888743 445677778889999998742                23467889999999999999932 23


Q ss_pred             EEEecCCCeEEEEeCCCCcE----EEEeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCC-CeEeccCCCCeE
Q 024676           76 SASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIR  149 (264)
Q Consensus        76 l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~i~  149 (264)
                      ++||..-+.|++|...++.=    .....|+..|..++|+|. ...++|||-|+.|+|||++.+... ......|.+-|+
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            67887788999999887641    122348889999999994 567889999999999999987433 344467888999


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEECCCC---ceeEEec-CCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCcee---
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLE-TKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGL---  220 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~-~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~---  220 (264)
                      .+.|+-.-. +|++|++||+++|||+|..   +++..++ +..+|+++.|+|..  .+++++.|..|.|||+....-   
T Consensus       307 VISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee  385 (440)
T KOG0302|consen  307 VISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE  385 (440)
T ss_pred             eEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence            999986554 8999999999999999864   4566675 56789999999965  456677889999999853110   


Q ss_pred             -----eeE-----------EecCCCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          221 -----VKG-----------YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       221 -----~~~-----------~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                           ...           ++.........|++....++++-+.|| +.||.
T Consensus       386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence                 111           111111223456666677899988888 45554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-22  Score=175.42  Aligned_cols=238  Identities=16%  Similarity=0.229  Sum_probs=191.4

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      +|+...+.|.|.|   +|.+|++++.|+.|++|+.... +.-.++..|...|.+++-.  +.+|++|+.+++|..+...+
T Consensus        11 aht~G~t~i~~d~---~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDP---DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcC---CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence            7999999999996   8999999999999999987665 3334454477778776654  45889999999999999988


Q ss_pred             CcEEEE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           93 GDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        93 ~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      ++.-.. -+.+-+++.++++-+|+.++.||.|-.|++.++....... ....|.+++.++.+.|.+. ++++.+-||.|+
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~-~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~  163 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK-VLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQ  163 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe-eecccCCceeeeeEcCCCC-EEEEEecCceEE
Confidence            764322 2346689999999999999999999999999987665433 3446899999999988655 666667789999


Q ss_pred             EEECCCCceeEEecC---------CCCEEEEEEcCC-CcEEEEeCCCcEEEEECCCceeeeEEec---CCCCceeeEcCC
Q 024676          172 LWDARSGKIVQTLET---------KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYNM---PCNTESASLEPK  238 (264)
Q Consensus       172 iwd~~~~~~~~~~~~---------~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~  238 (264)
                      +||+.++.+...+..         ...+..++|+|+ |++++.+.++.|++|+...++....+..   ........|.|+
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            999999887665532         234677899999 5777778899999999999988777753   233556778886


Q ss_pred             CCCEEEEecCCCeEEEEEcCc
Q 024676          239 LGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~  259 (264)
                       |.|+|+++.|+.|.|||+++
T Consensus       244 -G~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  244 -GKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             -CcEEeeeccCCcEEEEeccc
Confidence             99999999999999999985

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=4.5e-23  Score=164.48  Aligned_cols=170  Identities=23%  Similarity=0.382  Sum_probs=143.3

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE---EeeeCCcCCEEEEEECCCCc-EEEEecC
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHKGAVWSCCLDANAL-FSASGSA   81 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~---~~~~~H~~~V~~v~~~~~~~-~l~s~s~   81 (264)
                      +...+...||...=.+|.|+|.. .|. |++|..-+.|++|...+|.+.   ..|.+|+..|..++|+|... .|+|||.
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~-~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIK-TGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             cCceEEecccCccceeeeccccc-ccc-cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence            33445557899999999999954 454 578888899999999999874   46788999999999999764 5799999


Q ss_pred             CCeEEEEeCCCC---cEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC--CCCCeEeccCCCCeEEEEEecC
Q 024676           82 DFTAKLWDALTG---DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        82 D~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~  156 (264)
                      |++|||||++++   .++.+..|..-|+.+.|+....+|++|+.||++++||++.-  ..+...+..|+.+|+++.|.|.
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            999999999998   35556678899999999998889999999999999999853  2334566779999999999998


Q ss_pred             CCeEEEEeeCCCeEEEEECCC
Q 024676          157 DQTILSSCTDSGGVRLWDARS  177 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~  177 (264)
                      +...+++++.|.+|.|||+..
T Consensus       359 e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  359 EDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cCceEEeccCCCcEEEEEeec
Confidence            888888888889999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.5e-24  Score=185.18  Aligned_cols=231  Identities=20%  Similarity=0.309  Sum_probs=188.5

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      .|+..|.++.-.   ..++.+++|+.|..+-+|....-..+..|.+|+.+|.++.|+....++++|+.||+||+||++.+
T Consensus        26 ~hsaav~~lk~~---~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   26 AHSAAVGCLKIR---KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhceeeee---ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            578888888764   36789999999999999988765555568999999999999999999999999999999999988


Q ss_pred             cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676           94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus        94 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      ...+++ .|...+..+.|+|.+.+.++|+.|..+++||++......... .|...+..+.+.|+|. +++.+.+|.+++|
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki  180 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPDGR-WVASGGEDNTVKI  180 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCCCc-eeeccCCcceeee
Confidence            766665 577889999999999999999999999999998655544444 4777888888888665 5666778899999


Q ss_pred             EECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCC
Q 024676          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGED  249 (264)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d  249 (264)
                      ||+..|+.+..|+ +...+.++.++|...+++. +.|+++++||+++++.+....- ...+.+..|.+ .+..+.+|-++
T Consensus       181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~  259 (825)
T KOG0267|consen  181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI  259 (825)
T ss_pred             ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence            9999999999997 5678999999998877765 4589999999999987765533 33445556666 47777777654


Q ss_pred             C
Q 024676          250 M  250 (264)
Q Consensus       250 ~  250 (264)
                      .
T Consensus       260 s  260 (825)
T KOG0267|consen  260 S  260 (825)
T ss_pred             h
Confidence            4

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=4.7e-22  Score=154.93  Aligned_cols=227  Identities=18%  Similarity=0.187  Sum_probs=172.2

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      ..|..|+.+++|.+    -..+++|+.||.|+.+|++++.. ..+..|..+|+++.+.+-...+++||.|++|++||..+
T Consensus        51 ~~~~~plL~c~F~d----~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   51 FKHGAPLLDCAFAD----ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             eecCCceeeeeccC----CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            46999999999995    45789999999999999998864 35667999999999998888899999999999999987


Q ss_pred             CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      ....-.+...+.|.++..  .+..|+.|+.|..+.+||++.-....+ .-...+-.+.+++..|..+-++++ +-||.|.
T Consensus       126 ~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s-SieGRVa  202 (323)
T KOG1036|consen  126 KVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS-SIEGRVA  202 (323)
T ss_pred             cccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEE-eecceEE
Confidence            666666666777877644  577899999999999999987654432 222344568999999977666665 4558887


Q ss_pred             EEECCCCc----eeEEecC----------CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEec-CCCCceeeE
Q 024676          172 LWDARSGK----IVQTLET----------KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNM-PCNTESASL  235 (264)
Q Consensus       172 iwd~~~~~----~~~~~~~----------~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~  235 (264)
                      +=.+...+    ....++.          -.||++++|+|-...| +++.||.|.+||+.+.+.++.+.. ...+.+++|
T Consensus       203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf  282 (323)
T KOG1036|consen  203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF  282 (323)
T ss_pred             EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe
Confidence            75444331    1122222          2489999999986555 456789999999998877766644 344566777


Q ss_pred             cCCCCCEEEEecC
Q 024676          236 EPKLGNIFIAGGE  248 (264)
Q Consensus       236 ~~~~~~~~~~gs~  248 (264)
                      +. +|..||.|+.
T Consensus       283 s~-dG~~LAia~s  294 (323)
T KOG1036|consen  283 SM-DGSLLAIASS  294 (323)
T ss_pred             cc-CCCeEEEEec
Confidence            76 5888998875

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=1.2e-22  Score=162.87  Aligned_cols=204  Identities=23%  Similarity=0.344  Sum_probs=165.8

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-------ceEEeeeCCcCCEEEEEECCCC-cEEEEecCCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGSADF   83 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-------~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~   83 (264)
                      ..||+++|..++|+|.  +.+.+|+||.|-+|.||.+..+       +.+..+.||...|.-++|+|.- ..|+|++.|.
T Consensus        77 v~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             ccCccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            4689999999999994  5679999999999999987553       3467889999999999999965 5578999999


Q ss_pred             eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-CeEEEEEecCCCeEEE
Q 024676           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQTILS  162 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~  162 (264)
                      +|+|||+.+++.+.++.|..-|.++.|+.+|.++++++.|+.||+||.++++...... .|.| ...-+.|..++. +++
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~-i~t  232 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGK-IFT  232 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCc-eee
Confidence            9999999999999999999999999999999999999999999999999887765553 3444 333445665555 676


Q ss_pred             Eee---CCCeEEEEECCCCc---eeEEecCCCCEEEEEEcCCCcE--EEEeCCCcEEEEECCCce
Q 024676          163 SCT---DSGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRY--ITTADGSSVKFWDANHFG  219 (264)
Q Consensus       163 ~~~---~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~i~iwd~~~~~  219 (264)
                      +|.   .++++-+||....+   .+..+..++.|..-.+.||..+  |++-.|+.||+|.+.+-.
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            654   56889999976543   3566677778888889999764  344457899999987654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2e-24  Score=184.44  Aligned_cols=191  Identities=22%  Similarity=0.407  Sum_probs=168.0

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      +.+|+.+|-+|.|++   +..+|++|++||+|++||++..+.++++-||...+.+|.|+|-+.|+++||.|..+++||+.
T Consensus        66 ~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   66 LTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR  142 (825)
T ss_pred             eeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence            469999999999996   77899999999999999999999889999999999999999999999999999999999999


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ...+...+. |...|..+.++|+|+++++++.|.++++||+..++.. ..+..|.+.+..+. +++.+.++++++.|++|
T Consensus       143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv  220 (825)
T KOG0267|consen  143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTV  220 (825)
T ss_pred             ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-cccccccccccccc-cCchhhhhccCCCCcee
Confidence            766666665 7778999999999999999999999999999877654 44456778888888 45677889999999999


Q ss_pred             EEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeCC
Q 024676          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADG  207 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~  207 (264)
                      ++||+++.+.+...... ..|.+..|+|++..+.++..
T Consensus       221 ~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  221 RFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             eeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence            99999999988776543 46999999999988877754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.9e-22  Score=157.78  Aligned_cols=238  Identities=15%  Similarity=0.230  Sum_probs=175.3

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~   98 (264)
                      -.++.|++   -|.+||.|..||.+-|||..+...-+.|.+|--+|.+++|++||.+|+|+|+|-.+++||+..|.++..
T Consensus        26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            45799996   899999999999999999999887788999999999999999999999999999999999999999999


Q ss_pred             eecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCCeEEEE---EecCCCeEEEEeeCCCeEEEE
Q 024676           99 FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVA---WLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus        99 ~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      +....+|..+.|+| +.+.++++-.+....+-++..+.  ...+. ...+.....+   ++...+.++.+|...|.+.++
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence            99999999999999 44455555556555566654321  11111 1111111111   233344566677778999999


Q ss_pred             ECCCCceeEEecCC--CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCc-------eee--eEEec---CCCCceeeEcCC
Q 024676          174 DARSGKIVQTLETK--SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF-------GLV--KGYNM---PCNTESASLEPK  238 (264)
Q Consensus       174 d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~-------~~~--~~~~~---~~~~~~~~~~~~  238 (264)
                      |..+.+++..+...  ..|..+.++..|++++. ..|+.||.|+++..       ++.  +.++-   .......+|+. 
T Consensus       181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-  259 (405)
T KOG1273|consen  181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-  259 (405)
T ss_pred             ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-
Confidence            99999999887643  46889999999988765 67899999998632       111  22210   11223455665 


Q ss_pred             CCCEEEEecC-CCeEEEEEcCccee
Q 024676          239 LGNIFIAGGE-DMWVHVFDFHTGEQ  262 (264)
Q Consensus       239 ~~~~~~~gs~-d~~v~vwd~~~g~~  262 (264)
                      +|.|+++|+. -..+|+|....|..
T Consensus       260 dgeYv~a~s~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  260 DGEYVCAGSARAHALYIWEKSIGSL  284 (405)
T ss_pred             CccEEEeccccceeEEEEecCCcce
Confidence            6887776654 56799999877754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.5e-22  Score=168.17  Aligned_cols=228  Identities=16%  Similarity=0.195  Sum_probs=186.1

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEE
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRAC  108 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~  108 (264)
                      .+.|+.|. ...+.+|+..+++.....+.++..|.++.|+++|.+|+.|-.+|+|.|||..+.+....+.  |...|.++
T Consensus       188 ~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l  266 (484)
T KOG0305|consen  188 ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL  266 (484)
T ss_pred             CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence            44666654 4468999999998766666668999999999999999999999999999998877666654  67789999


Q ss_pred             EECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe-cCC
Q 024676          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETK  187 (264)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~  187 (264)
                      +|.  +..+.+|+.|+.|..+|++..+........|..++..+.|++++ .++++++.|+.+.|||....+++..+ ++.
T Consensus       267 aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~  343 (484)
T KOG0305|consen  267 AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHT  343 (484)
T ss_pred             ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccc
Confidence            998  66789999999999999988765544455688899999999855 57888889999999999777766655 566


Q ss_pred             CCEEEEEEcCCC-cEEEEe---CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe-cCCCeEEEEEcCccee
Q 024676          188 SPVTSAEVSRDG-RYITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG-GEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       188 ~~v~~~~~s~~~-~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-s~d~~v~vwd~~~g~~  262 (264)
                      ..|..++|+|=. .+||++   .|+.|++||..++..++.......+.++.+.+...+++.+- =.+..|.||+.-+.+.
T Consensus       344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~  423 (484)
T KOG0305|consen  344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL  423 (484)
T ss_pred             eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence            789999999954 455543   26899999999999999888888888999999877777764 3477899999866554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.3e-21  Score=153.00  Aligned_cols=200  Identities=19%  Similarity=0.291  Sum_probs=157.5

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      .-|.+.|++|.|.|... -++|++|+.||.|.+|+..+=+++.++++|++.|..++.+|.+++.++.+.|+++++||+-.
T Consensus        80 l~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             eccccceEEEEecCCcc-hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence            56999999999997442 24899999999999999988888999999999999999999999999999999999999999


Q ss_pred             CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      |+.-......+.-..+.|+|.|.+++.++. +.|-+|.++.... ..++.. ...+.++.|.  ++..+++|.+|+.|++
T Consensus       159 Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v-~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~  233 (362)
T KOG0294|consen  159 GRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASV-FREIEN-PKRILCATFL--DGSELLVGGDNEWISL  233 (362)
T ss_pred             CccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhH-hhhhhc-cccceeeeec--CCceEEEecCCceEEE
Confidence            887666666666666999999998876665 4578898875432 222221 2346666555  3445667778899999


Q ss_pred             EECCCCceeEEec-CCCCEEEEEE--cCCCcEEEE-eCCCcEEEEECCCc
Q 024676          173 WDARSGKIVQTLE-TKSPVTSAEV--SRDGRYITT-ADGSSVKFWDANHF  218 (264)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~--s~~~~~l~~-~~~~~i~iwd~~~~  218 (264)
                      ||-....+...+. +...|-.+.+  .|++.+|++ ++||.|++||++..
T Consensus       234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            9999988887775 4466777763  466777655 67899999999755

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.2e-22  Score=164.98  Aligned_cols=206  Identities=17%  Similarity=0.227  Sum_probs=164.9

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~   91 (264)
                      .||+..|.+|.|+-..  .+.||+||.|.+|++||+.++++..++.-|.+.|.+++|+|. ...+++||.|++|++.|++
T Consensus       240 ~gHTdavl~Ls~n~~~--~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNF--RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             ccchHHHHHHHhcccc--ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            3799999999998643  469999999999999999999999999999999999999985 5788999999999999998


Q ss_pred             C-CcEEEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           92 T-GDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        92 ~-~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      . ...-..++....|-.+.|+|.. ..+++++.||+++-+|+|......-....|.++|.+++++..-..++++++.|+.
T Consensus       318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~  397 (463)
T KOG0270|consen  318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV  397 (463)
T ss_pred             CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence            4 2333455667789999999955 4566677889999999998865556667899999999999888889999999999


Q ss_pred             EEEEECCCCcee----EEecCCCCEEEEEEcCCCcE-EE-EeCCCcEEEEECCCceee
Q 024676          170 VRLWDARSGKIV----QTLETKSPVTSAEVSRDGRY-IT-TADGSSVKFWDANHFGLV  221 (264)
Q Consensus       170 v~iwd~~~~~~~----~~~~~~~~v~~~~~s~~~~~-l~-~~~~~~i~iwd~~~~~~~  221 (264)
                      |++|++..-+..    +.+.. ....|.++.|+--+ ++ ++..+.+++||+.++..+
T Consensus       398 Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  398 VKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             EEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            999998754432    22222 23667777787544 33 344567999999876544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=170.98  Aligned_cols=240  Identities=21%  Similarity=0.220  Sum_probs=183.2

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC--ceEEeeeCCcCCEEEEEE-CCCCcEEEEecCCCeEEEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCL-DANALFSASGSADFTAKLW   88 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~--~~~~~~~~H~~~V~~v~~-~~~~~~l~s~s~D~~v~iw   88 (264)
                      +.-|++=|+.+...   .+|+.|+++|.|-+|.+|+...+  -++.+++.|++-|.++++ .++...+|||+-|+.|.+|
T Consensus        69 me~HsDWVNDiiL~---~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   69 MEHHSDWVNDIILC---GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW  145 (735)
T ss_pred             hhhhHhHHhhHHhh---cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence            35688888877665   47889999999999999999876  467788999999999999 7788889999999999999


Q ss_pred             eCCCCcE--EEEe----------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC
Q 024676           89 DALTGDE--KHSF----------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        89 d~~~~~~--~~~~----------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  156 (264)
                      |++++..  ...+          .+..+|++++.++.+..+++|+..+.+++||-++.+...... .|...|..+..+++
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dD  224 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDD  224 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCC
Confidence            9997732  2222          255689999999999999999999999999998877655554 78889999887765


Q ss_pred             CCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEE-EEeCCCcEEEEECCCce-eeeEEecCCCCcee
Q 024676          157 DQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFG-LVKGYNMPCNTESA  233 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~  233 (264)
                      +. .+++++.||+|++||+...+|+.++..+ ..+-++..+|+=..+ +++.++.|..=|++++. ++..++-..+....
T Consensus       225 Gt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l  303 (735)
T KOG0308|consen  225 GT-RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKL  303 (735)
T ss_pred             CC-eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhh
Confidence            54 5556677799999999999999988644 458889999886665 45568899999999853 33333322222222


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEc
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      ...- ...-+.++..|+.|+-|-.
T Consensus       304 ~~~~-~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  304 HLHE-HDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             hhcc-ccCCceeeeccccceecCC
Confidence            2221 1233477788888888854

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=8.4e-23  Score=175.69  Aligned_cols=185  Identities=23%  Similarity=0.316  Sum_probs=151.8

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWD   89 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd   89 (264)
                      ++..|++.++.+.|++..|  .+|++||+||.|+.||++..+-..++.+....|+.|.|+| .+..++++...|.+++||
T Consensus       128 ~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD  205 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD  205 (839)
T ss_pred             HhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence            4467999999999999877  5999999999999999999888888999999999999997 467789999999999999


Q ss_pred             CCCCc--EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee--
Q 024676           90 ALTGD--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--  165 (264)
Q Consensus        90 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--  165 (264)
                      ++...  .+....|..+|.+|.|+|+..+|+||+.|+++++||..+++.....--+...++..+.|-|.-.+.|++|+  
T Consensus       206 lRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv  285 (839)
T KOG0269|consen  206 LRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV  285 (839)
T ss_pred             ccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc
Confidence            98753  22334699999999999999999999999999999997665544333345678999999998888888876  


Q ss_pred             CCCeEEEEECCCCc-eeEEecCCC-CEEEEEEcC
Q 024676          166 DSGGVRLWDARSGK-IVQTLETKS-PVTSAEVSR  197 (264)
Q Consensus       166 ~d~~v~iwd~~~~~-~~~~~~~~~-~v~~~~~s~  197 (264)
                      .|-.|+|||++-.- +...+..+. .+..++|..
T Consensus       286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             ccceEEEEeeccccccceeeeccCccccceeccC
Confidence            55789999997543 345555444 466677754

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.8e-21  Score=166.52  Aligned_cols=256  Identities=17%  Similarity=0.193  Sum_probs=188.6

Q ss_pred             CcceeecceEeeccCCCeeeeEecc---------CCCCCeEEEEEeCCCCcEEEeCCCCc---e-EE-------------
Q 024676            2 DKRKVAVPLVCHGHSRPVVDLFYSP---------ITPDGFFLVSASKDSSPMLRNGETGD---W-IG-------------   55 (264)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~~~~~~---------~~~~g~~l~t~s~d~~v~i~~~~~~~---~-~~-------------   55 (264)
                      |-+|+.+-..+.-|+..|+.|.--|         .-|-++ ++|+|.|++||+|++..+.   . .+             
T Consensus       355 D~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~  433 (1080)
T KOG1408|consen  355 DVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE  433 (1080)
T ss_pred             ccccccceeeeeeccceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence            4455666666678999999987666         123355 5899999999999986521   1 00             


Q ss_pred             -----e--------e-------eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECC--
Q 024676           56 -----T--------F-------EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE--  112 (264)
Q Consensus        56 -----~--------~-------~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--  112 (264)
                           .        |       -+-+-.+++++++|++++||+|.+-|++|++++...+.....+ |+..|.++.|+.  
T Consensus       434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~  513 (1080)
T KOG1408|consen  434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV  513 (1080)
T ss_pred             cCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch
Confidence                 0        0       0123468999999999999999999999999998876555554 889999999976  


Q ss_pred             -CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEec------------------------------------
Q 024676          113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH------------------------------------  155 (264)
Q Consensus       113 -~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~------------------------------------  155 (264)
                       ..++|++++.|+-|.+||+.........+..|...|+++.|--                                    
T Consensus       514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t  593 (1080)
T KOG1408|consen  514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT  593 (1080)
T ss_pred             hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence             4689999999999999998654433333334443433333211                                    


Q ss_pred             ------------CCCeEEEEeeCCCeEEEEECCCCceeEEecC----CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCc
Q 024676          156 ------------SDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF  218 (264)
Q Consensus       156 ------------~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~  218 (264)
                                  +...+++++..|+.|+|||+++++....++.    ......+...|.|.|++++ +|.++-++|...+
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence                        1123455666779999999999999988864    2456778899999998764 6899999999999


Q ss_pred             eeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +++..-..+........+.++=+.|++.+.|+.|.||.+-
T Consensus       674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            9987666665555544444456779999999999999874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=9.6e-22  Score=160.61  Aligned_cols=204  Identities=18%  Similarity=0.226  Sum_probs=161.6

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC---
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT---   92 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~---   92 (264)
                      .++|.||.-+|   +|.+|+.|.-.+.+.+|.+.+|.++..+.+|-..|.++.|+.|+.+++|||.||.|.+|.+..   
T Consensus        81 Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   81 PGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             ccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence            46788887775   899999998999999999999999999999999999999999999999999999999998632   


Q ss_pred             ------CcEEEEee-cCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           93 ------GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        93 ------~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                            -.+...+. |.-+|+.+...+  ...+++|+|.|+++|+||+-.+.......  ....+.+++..|.+..++ .
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~y-i  234 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVY-I  234 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEE-e
Confidence                  22444443 777899887766  45789999999999999998776654444  345788888777665545 4


Q ss_pred             eeCCCeEEEEECCCCc----------------eeEEec-CC--CCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeE
Q 024676          164 CTDSGGVRLWDARSGK----------------IVQTLE-TK--SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG  223 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~----------------~~~~~~-~~--~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~  223 (264)
                      |..+|.|.+.++.+-.                .+..+. +.  .+|++++++-||.+|++++ |+.+.+||+....++++
T Consensus       235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            5677999998875322                122222 22  3799999999999887765 89999999988877776


Q ss_pred             Ee
Q 024676          224 YN  225 (264)
Q Consensus       224 ~~  225 (264)
                      ..
T Consensus       315 l~  316 (476)
T KOG0646|consen  315 LQ  316 (476)
T ss_pred             Hh
Confidence            65

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=8.4e-22  Score=166.46  Aligned_cols=244  Identities=20%  Similarity=0.274  Sum_probs=165.9

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEe
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD   89 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd   89 (264)
                      ..|...|-++.|.|   ....|++++.|.+++.||+++.++++.  +.||.+.|.++||.++. ..|++|++|+.+.|||
T Consensus        97 ~aH~nAifDl~wap---ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAP---GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             ccccceeEeeccCC---CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            57999999999997   556899999999999999999988876  89999999999999976 4579999999999999


Q ss_pred             CCCCcEEE-------------E---------------eecCCeEEE---EEECCCCCEEEEeeC-CCcEEEeeCCCCCCC
Q 024676           90 ALTGDEKH-------------S---------------FEHKHIVRA---CAFSEDTHLLLTGGF-EKILRIFDLNRPDAP  137 (264)
Q Consensus        90 ~~~~~~~~-------------~---------------~~~~~~v~~---~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~  137 (264)
                      +.-.....             .               ..+...+..   +.+..++..|++++. |+.||+||+++....
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            74322000             0               012223333   456677778898887 999999999875433


Q ss_pred             CeEe--------ccCCC--CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--eEEecCC---CCEEEEEEcCCCcEE
Q 024676          138 PREV--------GNSSG--SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLETK---SPVTSAEVSRDGRYI  202 (264)
Q Consensus       138 ~~~~--------~~~~~--~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~---~~v~~~~~s~~~~~l  202 (264)
                      ..+.        .+.+.  .+.++..-..+..++++|. |+.|..|++++...  +..+.+.   .--..-..+|++.++
T Consensus       254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence            2211        01111  1333333344677888888 58999999987543  3333321   112234578999998


Q ss_pred             EEe-CCCcEEEEECCCcee-eeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          203 TTA-DGSSVKFWDANHFGL-VKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       203 ~~~-~~~~i~iwd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      +++ .+....+|.+.+-+. ...+..+. .....++.+..-.-+++++.|..+++|++..|
T Consensus       333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            765 578999999876443 11111111 12233444333334677799999999998654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.4e-20  Score=151.55  Aligned_cols=196  Identities=14%  Similarity=0.208  Sum_probs=157.3

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC--CCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEeCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG--ETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDAL   91 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~--~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd~~   91 (264)
                      -.++|.+|.|+|..|   .|++|+.|+.++||-+  ..+..++.+.--+.+|.+.+|.|+|. .++++++......||+.
T Consensus       212 s~~~I~sv~FHp~~p---lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAP---LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CcCCceEEEecCCCc---eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            346899999998555   8999999999999855  44566777766788999999999998 88999999999999998


Q ss_pred             CCcEEEEee---c-CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           92 TGDEKHSFE---H-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        92 ~~~~~~~~~---~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      +++....-+   + +..+....++|++++++..+..|.|.+....+++......  -.+.+..++|+.++..++++|+ +
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~-~  365 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGG-T  365 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcC-C
Confidence            876433321   2 2346677889999999999999999999887776543332  4678899999987776666655 4


Q ss_pred             CeEEEEECCCCceeEEecCCCC--EEEEEEcCCCcEEEEeCC-CcEEEEECC
Q 024676          168 GGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYITTADG-SSVKFWDAN  216 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~-~~i~iwd~~  216 (264)
                      |.|.+||+++..+++.+.....  -.+++.|+++.+++++++ |.|.|||..
T Consensus       366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            9999999999999998876554  457788899999998775 788999953

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-19  Score=141.60  Aligned_cols=241  Identities=18%  Similarity=0.326  Sum_probs=168.3

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--Cce--EEeeeCCcCCEEEEEECC--CCcEEEEecCCCeE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDA--NALFSASGSADFTA   85 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~~~--~~~~~~H~~~V~~v~~~~--~~~~l~s~s~D~~v   85 (264)
                      ..+|.+-|.++.|.+   .|+.+||||.|.++.|||.++  +.+  ....+.|.+.|+.|.|.+  -|+.+|++|.|+++
T Consensus         9 ~s~h~DlihdVs~D~---~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDF---YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             ccCCcceeeeeeecc---cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            468999999999996   899999999999999999644  343  456678999999999975  47889999999999


Q ss_pred             EEEeCCCC------c---EEEEe-ecCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCC-----CeE-------e
Q 024676           86 KLWDALTG------D---EKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAP-----PRE-------V  141 (264)
Q Consensus        86 ~iwd~~~~------~---~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~-----~~~-------~  141 (264)
                      +||.-...      .   ...++ .....|+.++|.|  -|-.|++++.||++|+|+....-..     ..+       .
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            99974211      0   11122 2455799999999  4677889999999999987532111     111       1


Q ss_pred             ccCCCCeEEEEEecCC--CeEEEEeeCC-----CeEEEEECCCC--ce--eEEe-cCCCCEEEEEEcCCC----cEEEEe
Q 024676          142 GNSSGSIRTVAWLHSD--QTILSSCTDS-----GGVRLWDARSG--KI--VQTL-ETKSPVTSAEVSRDG----RYITTA  205 (264)
Q Consensus       142 ~~~~~~i~~~~~~~~~--~~~~~~~~~d-----~~v~iwd~~~~--~~--~~~~-~~~~~v~~~~~s~~~----~~l~~~  205 (264)
                      +.+..+..|+.|++.-  ..+++.++++     +.++||....+  +.  +.++ .+..+|..++|.|+-    .+|+.+
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence            2344567889998642  2356666654     47999976543  22  2233 345789999999983    245554


Q ss_pred             C-CCcEEEEECCCc--------------------eeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          206 D-GSSVKFWDANHF--------------------GLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       206 ~-~~~i~iwd~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      . || |+||.++.-                    +.+..|.- .+..-+..+.. .|.+|++.|.||.||+|..
T Consensus       246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence            4 55 999998731                    01122211 23344555655 5899999999999999964

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=8.3e-21  Score=160.49  Aligned_cols=240  Identities=18%  Similarity=0.262  Sum_probs=166.4

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE------EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI------GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~------~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~   94 (264)
                      +..|++.......|+.+..||.|.++|.....+.      ..+..|.+.|..+.|.|...+|++++.|.++|+||++++.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            3677765545578899999999999998765432      4456799999999999988889999999999999999886


Q ss_pred             EEE---EeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCC------e-----------------E---eccC
Q 024676           95 EKH---SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPP------R-----------------E---VGNS  144 (264)
Q Consensus        95 ~~~---~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~------~-----------------~---~~~~  144 (264)
                      ..-   .+.|...|..+||.|. ...+++|+.|+.|.+||++......      +                 .   ...+
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            544   3579999999999995 4667789999999999986322100      0                 0   0011


Q ss_pred             CCCeEE---EEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec--------C----CCCEEEEEEcCCCcE-EEEeCCC
Q 024676          145 SGSIRT---VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------T----KSPVTSAEVSRDGRY-ITTADGS  208 (264)
Q Consensus       145 ~~~i~~---~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--------~----~~~v~~~~~s~~~~~-l~~~~~~  208 (264)
                      ...+..   +.++.++.+++.++..|+.||+||+++.......+        .    ...+.++....-|.+ ++...|+
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence            122333   44455555544444448999999999876432221        1    123667777776755 5667799


Q ss_pred             cEEEEECCCcee--eeEEecC--CCC-ceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          209 SVKFWDANHFGL--VKGYNMP--CNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       209 ~i~iwd~~~~~~--~~~~~~~--~~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .|.+||+.....  +..|...  ..+ ......+ ++.++++|+.|..+++|.+++-+
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e  350 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPE  350 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCcc
Confidence            999999987543  2222111  011 1222334 68999999999999999987654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=8.3e-20  Score=155.38  Aligned_cols=240  Identities=16%  Similarity=0.221  Sum_probs=186.0

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce-EEeeeCCc-CCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~-~~~~~~H~-~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      -..+|.+++|+.   ..+.||.+=.||.|.+|++..+=+ ...+.|++ ..|.+++|.+ +..|.|.+-+|+|.-||+.+
T Consensus        24 ~Ps~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   24 KPSEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eccceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence            356899999996   445699999999999999987643 34566664 4799999995 55667888899999999999


Q ss_pred             CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ++++.... ...+++.++.+|.+..++.|+.||.+..+++..+........ ..++.+.+++|.+.+. .+++|+.||.|
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~I  178 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVI  178 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCceE
Confidence            99888876 456899999999999999999999888888765554444333 3458899999987654 46677778999


Q ss_pred             EEEECCCCceeEEe-----cCC--C--CEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC-CCCceeeEcCCCC
Q 024676          171 RLWDARSGKIVQTL-----ETK--S--PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLG  240 (264)
Q Consensus       171 ~iwd~~~~~~~~~~-----~~~--~--~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~  240 (264)
                      ++||..++..++..     ...  .  -|-++.+-.++.++++-+.|+|++||...+..++.+..+ ....+.+..+ .+
T Consensus       179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~  257 (691)
T KOG2048|consen  179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NE  257 (691)
T ss_pred             EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CC
Confidence            99999999876622     111  1  255666667877766666799999999999998888653 4555666665 47


Q ss_pred             CEEEEecCCCeEEEEEcCcc
Q 024676          241 NIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       241 ~~~~~gs~d~~v~vwd~~~g  260 (264)
                      ++|+++|.|+.|..|..+++
T Consensus       258 d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  258 DRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             CeEEEccCCCceEEEEecCC
Confidence            88999999999999976654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.7e-22  Score=178.20  Aligned_cols=203  Identities=21%  Similarity=0.297  Sum_probs=160.4

Q ss_pred             CCEEEEEECCCCcE----EEEecCCCeEEEEeCCC---Cc---EEEEe-ecCCeEEEEEECCC-CCEEEEeeCCCcEEEe
Q 024676           62 GAVWSCCLDANALF----SASGSADFTAKLWDALT---GD---EKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIF  129 (264)
Q Consensus        62 ~~V~~v~~~~~~~~----l~s~s~D~~v~iwd~~~---~~---~~~~~-~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~  129 (264)
                      ..-+.++|.+.+..    ++.|..||.|-+||...   +.   .+..+ .|+.+|..+.|++. +++|++|+.|+.|.+|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            34577899887665    89999999999999755   22   12222 48899999999995 4599999999999999


Q ss_pred             eCCCCCCCCeEec-cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC---CCEEEEEEcCCC--cEEE
Q 024676          130 DLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDG--RYIT  203 (264)
Q Consensus       130 d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~--~~l~  203 (264)
                      |++..+.....-. .....|.+++|+-...+++++++.+|.+-|||+|..+.+..+...   ..+..++|+|++  ++++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            9988665443322 245689999999888899999999999999999999877666543   348899999997  4555


Q ss_pred             EeC-CC--cEEEEECCCc-eeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCcceeeC
Q 024676          204 TAD-GS--SVKFWDANHF-GLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG  264 (264)
Q Consensus       204 ~~~-~~--~i~iwd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i~  264 (264)
                      +++ |+  .|.+||+|.- ..++.++.+. ...+..+++.+.+++++++.|+.|.+||..+||.++
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            554 33  6999999864 5677775543 567788898878999999999999999999999874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=2.5e-20  Score=152.18  Aligned_cols=252  Identities=17%  Similarity=0.184  Sum_probs=182.3

Q ss_pred             cceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676            3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGS   80 (264)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s   80 (264)
                      .+..+..+++..|+.+|.+|.|+|..+  .++++.|+||++|.-|.+.+..  +..+..-......+.|+.+..-++.+.
T Consensus       221 ~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~  298 (498)
T KOG4328|consen  221 EKDKDGVYLFTPHSGPVSGLKFSPANT--SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD  298 (498)
T ss_pred             CCccCceEEeccCCccccceEecCCCh--hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee
Confidence            345566777889999999999999654  5789999999999999987753  333332334556677887776666666


Q ss_pred             CCCeEEEEeCCCCcE-EEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCC---eEeccCCCCeEEEEEe
Q 024676           81 ADFTAKLWDALTGDE-KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWL  154 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~  154 (264)
                      .=|...+||.+++.. ...+ -|...|+.++++| ...+|+|++.|++.++||++.-....   .....|.-.|.+..|+
T Consensus       299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence            556899999987653 2222 3777999999999 56788899999999999997543322   2335678889999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEECC----CCceeEEecCCC------CEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeE
Q 024676          155 HSDQTILSSCTDSGGVRLWDAR----SGKIVQTLETKS------PVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG  223 (264)
Q Consensus       155 ~~~~~~~~~~~~d~~v~iwd~~----~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~  223 (264)
                      |.++.++++|. |..|+|||..    .......+.+++      ....+.|.|+..+++.+. -+.|-|+|-..++.+..
T Consensus       379 Ps~gtl~TT~~-D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  379 PSGGTLLTTCQ-DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             CCCCceEeecc-CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            99999777765 5899999984    334444444432      234578999988888775 57899999988887766


Q ss_pred             EecCCC---CceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          224 YNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       224 ~~~~~~---~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      +..+..   +....++|....+++.|+.-|.|+||--
T Consensus       458 l~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  458 LHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ccCccccccccceeecccccceeccCCccceEEEEec
Confidence            544332   2334567753336666777899999953

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=5.8e-21  Score=151.86  Aligned_cols=243  Identities=13%  Similarity=0.181  Sum_probs=180.3

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ...+..|.+.|.+|.+..     ..+++++.|++|+.|.++. ..+.++.+. ..+..+.-+..+..++|++.+  |-||
T Consensus       102 ~~~f~AH~G~V~Gi~v~~-----~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe~--i~IW  172 (433)
T KOG0268|consen  102 IRTFKAHEGLVRGICVTQ-----TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGEQ--IDIW  172 (433)
T ss_pred             hheeecccCceeeEEecc-----cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccccccccccccCce--eeec
Confidence            445678999999999873     4568999999999998764 456666543 344555555566777888765  8999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      |..-..++..+. -...+.++.++|.. .+|++|..|+.|.+||++.........  .....+.++|+| ....++++.+
T Consensus       173 D~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnP-eafnF~~a~E  249 (433)
T KOG0268|consen  173 DEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNP-EAFNFVAANE  249 (433)
T ss_pred             ccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCc-cccceeeccc
Confidence            987666777665 34568899999955 566677799999999998776554433  234567899999 6677888899


Q ss_pred             CCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCC
Q 024676          167 SGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGN  241 (264)
Q Consensus       167 d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~  241 (264)
                      |-.+..+|++..+ ++.... +.+.|.++.|||-|+-+++++ |.+|+||..+.+..=..|...  .+..+.-++. +.+
T Consensus       250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dsk  328 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSK  328 (433)
T ss_pred             cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-ccc
Confidence            9999999998754 444443 446799999999998766654 999999999876544444322  2233444555 589


Q ss_pred             EEEEecCCCeEEEEEcCcceeeC
Q 024676          242 IFIAGGEDMWVHVFDFHTGEQIG  264 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g~~i~  264 (264)
                      ++++||.|+.||+|.....+++|
T Consensus       329 yi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  329 YIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EEEecCCCcceeeeecchhhhcC
Confidence            99999999999999987766654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=2.3e-20  Score=158.88  Aligned_cols=228  Identities=19%  Similarity=0.325  Sum_probs=172.8

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      +.|..++|.|   ||..|+.+..| .+.+||.+.|..+++++||++.|++++|+.||+.++||+.|+.|.+|.- .-+-+
T Consensus        13 hci~d~afkP---DGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~-klEG~   87 (1081)
T KOG1538|consen   13 HCINDIAFKP---DGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTS-KLEGI   87 (1081)
T ss_pred             cchheeEECC---CCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecc-cccce
Confidence            3899999996   89887776554 4679999999999999999999999999999999999999999999984 33445


Q ss_pred             EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676           97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      ..+.|.+.+.+..|+|-.+.|++|+... .-+|..+....   ........+.+++|..++. +++-|..+|+|.|-+-.
T Consensus        88 LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V---~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSV---SKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKN  162 (1081)
T ss_pred             eeeccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhH---HhhhhheeEEEeeecCCCc-EEEEeccCceEEeecCC
Confidence            6788999999999999999999988643 45676532211   1112345678889997665 55566778999997543


Q ss_pred             CCceeEEe-c---CCCCEEEEEEcCCC-----cEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676          177 SGKIVQTL-E---TKSPVTSAEVSRDG-----RYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG  246 (264)
Q Consensus       177 ~~~~~~~~-~---~~~~v~~~~~s~~~-----~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (264)
                       +++...+ .   .+++|.+++|+|+.     ..++. ..+.++.++.+.....-+.-.....+.++..+++ |+++..|
T Consensus       163 -gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~N-GEy~LiG  240 (1081)
T KOG1538|consen  163 -GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTN-GEYILLG  240 (1081)
T ss_pred             -CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccC-CcEEEEc
Confidence             4333223 2   35789999999874     23433 3477888888865544444555566677888885 9999999


Q ss_pred             cCCCeEEEEE
Q 024676          247 GEDMWVHVFD  256 (264)
Q Consensus       247 s~d~~v~vwd  256 (264)
                      |.|+.+++|-
T Consensus       241 Gsdk~L~~fT  250 (1081)
T KOG1538|consen  241 GSDKQLSLFT  250 (1081)
T ss_pred             cCCCceEEEe
Confidence            9999999995

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=1e-20  Score=156.16  Aligned_cols=236  Identities=15%  Similarity=0.188  Sum_probs=181.8

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      -..-|..+...   |||+.|++|+.-.++.|||+..-+..  ..+..-.-..++++.+||.+...++..||.|.|||+.+
T Consensus       464 rdnyiRSckL~---pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  464 RDNYIRSCKLL---PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             cccceeeeEec---CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence            34456666666   49999999999999999999765432  23332223567889999999988999999999999999


Q ss_pred             CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      ...++.++ |.+.+.++.++++|..|-||+.|+++|-||++.+....+-  .....|.++-++|.++++ +.+..++.+-
T Consensus       541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWl-avGMens~ve  617 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWL-AVGMENSNVE  617 (705)
T ss_pred             ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccce-eeecccCcEE
Confidence            88888876 8899999999999999999999999999999876543222  234568888889888775 4568888888


Q ss_pred             EEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC
Q 024676          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (264)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~  250 (264)
                      |....+-+..+.-.+.+-|.++.|++.|+++++ +-|+.+..|....+..+...+......+...+. ++++++|||.|+
T Consensus       618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~-ddkyIVTGSGdk  696 (705)
T KOG0639|consen  618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISF-DDKYIVTGSGDK  696 (705)
T ss_pred             EEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeecc-CceEEEecCCCc
Confidence            877665554443455667999999999998765 568899999988886543333334444555555 589999999999


Q ss_pred             eEEEEEc
Q 024676          251 WVHVFDF  257 (264)
Q Consensus       251 ~v~vwd~  257 (264)
                      ..-||.+
T Consensus       697 kATVYeV  703 (705)
T KOG0639|consen  697 KATVYEV  703 (705)
T ss_pred             ceEEEEE
Confidence            9888865

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=9e-20  Score=143.29  Aligned_cols=238  Identities=24%  Similarity=0.347  Sum_probs=171.7

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-----C--c-----eEEeeeCC-cCCEEEEEEC-------CCCcEEEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----G--D-----WIGTFEGH-KGAVWSCCLD-------ANALFSAS   78 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-----~--~-----~~~~~~~H-~~~V~~v~~~-------~~~~~l~s   78 (264)
                      ...++|+|   ||..+++-+.|..+++|++..     +  .     ....++-. ...|+..+|-       |+..++++
T Consensus        52 ~kgckWSP---DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   52 LKGCKWSP---DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hccceeCC---CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence            34678885   999999999999999998642     1  0     01112211 2346666663       67788999


Q ss_pred             ecCCCeEEEEeCCCCcEEEEee---cCCe---EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEe-----ccCC
Q 024676           79 GSADFTAKLWDALTGDEKHSFE---HKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REV-----GNSS  145 (264)
Q Consensus        79 ~s~D~~v~iwd~~~~~~~~~~~---~~~~---v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~-----~~~~  145 (264)
                      .++|.-|+|||..+|+....+.   |...   -.+++|+|+|..|++ +..++|++||+..+....  ...     ....
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhccccccc
Confidence            9999999999999999887764   4443   468999999999885 578999999984332211  111     1224


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe-C-CCcEEEEECCCce-ee
Q 024676          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-D-GSSVKFWDANHFG-LV  221 (264)
Q Consensus       146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~-~~~i~iwd~~~~~-~~  221 (264)
                      +-+.+++++|.+...++.++.-+.+-|+.-..++++..+. +...|+-+.|.++|..|.++ . +..|..||+|... ++
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            5688899999888888888888899999888888877664 55679999999999766544 3 6789999999753 33


Q ss_pred             eEEec---CCCCc-eeeEcCCCCCEEEEecCCCeEEEEEcCc-ce
Q 024676          222 KGYNM---PCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHT-GE  261 (264)
Q Consensus       222 ~~~~~---~~~~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~~-g~  261 (264)
                      -.+.-   ..+.. -+.+.| .+++|++|++||.|++||++. |+
T Consensus       288 ~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  288 YALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             hhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCC
Confidence            22221   12222 233445 589999999999999999886 55

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=1.4e-20  Score=147.92  Aligned_cols=240  Identities=15%  Similarity=0.231  Sum_probs=172.2

Q ss_pred             cCCCeeeeEeccCCCC-CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~-g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~   92 (264)
                      |.+....++|.=.+.+ .=+||.|+.-|.|+|.|+.++++.+.+.||.+.|+.+.+.|+. ++++++|.|.+||||++.+
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            7777788888754443 3488999999999999999999999999999999999999976 6789999999999999999


Q ss_pred             CcEEEEee----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe---------------------------Ee
Q 024676           93 GDEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---------------------------EV  141 (264)
Q Consensus        93 ~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~---------------------------~~  141 (264)
                      ..++..+.    |...|.++.|++++.++++|+.|..+++|+++..+....                           ..
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            99998884    888999999999999999999999999999973221100                           00


Q ss_pred             ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC-CCCce-------------eEEecC-CCCEEEEE--EcCCCcEEEE
Q 024676          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA-RSGKI-------------VQTLET-KSPVTSAE--VSRDGRYITT  204 (264)
Q Consensus       142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~-~~~~~-------------~~~~~~-~~~v~~~~--~s~~~~~l~~  204 (264)
                      ..|...+-|+.|+  +. ++++-+-++.|..|-. +-++.             +..++. ...+-.+.  +.|-++.|+.
T Consensus       248 diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  248 DIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             ccccchHHHHHHH--hh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence            1122333444444  23 4445454579999987 21111             122221 12344444  4555677776


Q ss_pred             eC-CCcEEEEECCCceee--eEEec--CC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          205 AD-GSSVKFWDANHFGLV--KGYNM--PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       205 ~~-~~~i~iwd~~~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +. .+.+.+||+++.++.  .++..  .. .....+++ .++.+|+....|++|--||..
T Consensus       325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS-~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS-RDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec-ccCcEEEEEeCCCcEEEEEee
Confidence            54 689999999987763  22221  11 22233444 469999999999999999853

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=8.3e-21  Score=158.46  Aligned_cols=245  Identities=19%  Similarity=0.254  Sum_probs=176.9

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--------CceEEeeeCCcCCEEEEEECCCCcEEEEe
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------GDWIGTFEGHKGAVWSCCLDANALFSASG   79 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--------~~~~~~~~~H~~~V~~v~~~~~~~~l~s~   79 (264)
                      ....++.|...|.+++|+|.+|   .|++++.|+.+.+|++.+        -+.+.+|.+|+++|.|+++.+.+....||
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence            3446788999999999998776   799999999999999832        13578999999999999999999999999


Q ss_pred             cCCCeEEEEeCCCCc---------EE--EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc--CCC
Q 024676           80 SADFTAKLWDALTGD---------EK--HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSG  146 (264)
Q Consensus        80 s~D~~v~iwd~~~~~---------~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~  146 (264)
                      +.||+|+.|++....         .+  ....|...|+.+++++....|++|+.|++++.|+......  ..++.  ..+
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g  440 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHG  440 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccC
Confidence            999999999764221         11  1124888999999999999999999999999999754332  11211  123


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC--------CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCC
Q 024676          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYI-TTADGSSVKFWDANH  217 (264)
Q Consensus       147 ~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~  217 (264)
                      ....+++......+.++...-+.-.+.|.+..+.+..+..        ...++.+..+|++-+. .+..++.|+++|..+
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence            3345555443323333322323344445555544444422        1347778888887664 456789999999999


Q ss_pred             ceeeeEEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          218 FGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       218 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +.++..-..+ ....++++.++ |-+|.+|+.|+.+++|..+
T Consensus       521 ~~~l~s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  521 GKILHSMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             cccchheeeccceecceeecCC-CceEEeecCCceeehhhcc
Confidence            9887655443 34456677775 8899999999999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.9e-19  Score=147.32  Aligned_cols=229  Identities=16%  Similarity=0.202  Sum_probs=166.3

Q ss_pred             EEEEEeCCC-CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEE
Q 024676           33 FLVSASKDS-SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAF  110 (264)
Q Consensus        33 ~l~t~s~d~-~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~  110 (264)
                      ||+++...+ .+.+|...........----++|.+++-+|.|.+++.|.--+.+.+|.+.+|..+..+ .|-..|+++.|
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f  131 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF  131 (476)
T ss_pred             heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence            444443333 4556666543322211112367999999999999998888899999999999877766 47889999999


Q ss_pred             CCCCCEEEEeeCCCcEEEeeCC-------CCCC-CCeEeccCCCCeEEEEEecCC-CeEEEEeeCCCeEEEEECCCCcee
Q 024676          111 SEDTHLLLTGGFEKILRIFDLN-------RPDA-PPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIV  181 (264)
Q Consensus       111 ~~~~~~l~s~~~d~~i~~~d~~-------~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~~~  181 (264)
                      +-++.+++||+.|+-+.+|.+-       +... +...+..|.-+|+.+...+.+ ...+.+++.|+++|+||+..+..+
T Consensus       132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL  211 (476)
T KOG0646|consen  132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL  211 (476)
T ss_pred             eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence            9999999999999999999862       1111 223445567777777655432 236778889999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCce----------------eeeEEecCC---CCceeeEcCCCCC
Q 024676          182 QTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFG----------------LVKGYNMPC---NTESASLEPKLGN  241 (264)
Q Consensus       182 ~~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~----------------~~~~~~~~~---~~~~~~~~~~~~~  241 (264)
                      .++....++.+++++|.++.+ +++.+|.|.+.++.+..                .++.+..+.   ...+.+.+. +|.
T Consensus       212 lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-Dgt  290 (476)
T KOG0646|consen  212 LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGT  290 (476)
T ss_pred             EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-Ccc
Confidence            888888899999999998765 55567888777664321                123333322   334555555 599


Q ss_pred             EEEEecCCCeEEEEEcCccee
Q 024676          242 IFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      +|++|++||.|+|||..+-+.
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQC  311 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHH
Confidence            999999999999999876543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.9e-19  Score=135.48  Aligned_cols=221  Identities=18%  Similarity=0.310  Sum_probs=166.2

Q ss_pred             CCCCCeEEEEEeCCCCcEEEeCCC---------Cc-eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE-
Q 024676           27 ITPDGFFLVSASKDSSPMLRNGET---------GD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE-   95 (264)
Q Consensus        27 ~~~~g~~l~t~s~d~~v~i~~~~~---------~~-~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~-   95 (264)
                      ++|.+++|++|+.+|++-+..+..         ++ .+-.+++|.++|+.++|.  ..+|++|+ ||.|+=|..+.... 
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es   94 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEES   94 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhh
Confidence            346899999999999999987643         22 345678999999999998  44566666 59999997654321 


Q ss_pred             ---EEEee-----cC-----CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           96 ---KHSFE-----HK-----HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        96 ---~~~~~-----~~-----~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                         +..++     +.     -.|+.+...|+.+-++.++.|+.+.-||+++++. .+....|...+.+++--...+. +.
T Consensus        95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~R~~~~q-il  172 (325)
T KOG0649|consen   95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVGRNANGQ-IL  172 (325)
T ss_pred             ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeeecccCcc-ee
Confidence               11111     11     2478999999877777778999999999998864 4566678999999886444444 55


Q ss_pred             EeeCCCeEEEEECCCCceeEEecCC-----------CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCc
Q 024676          163 SCTDSGGVRLWDARSGKIVQTLETK-----------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE  231 (264)
Q Consensus       163 ~~~~d~~v~iwd~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~  231 (264)
                      ++++||++||||.++++++..++..           ..|.+++.  +...++++.+..+.+|.++..+++..|.++.+.-
T Consensus       173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~  250 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVH  250 (325)
T ss_pred             ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEeccccee
Confidence            7789999999999999998776431           12444444  5568999988899999999999999999887655


Q ss_pred             eeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          232 SASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      -..|   ..+.++++|+.+.|.-|-+
T Consensus       251 ~v~F---~~d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  251 LVDF---VDDCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             Eeee---ecceEEEeccccceeeeee
Confidence            4444   3567888998888888865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=4.7e-20  Score=160.12  Aligned_cols=197  Identities=20%  Similarity=0.287  Sum_probs=172.7

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee---eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~---~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      ..+.+|.-+   +-|++.+.|+..|.|-+++..+|-....|   ..|+++|..++.+..++.++|++.||-+++||....
T Consensus       449 ~~~~av~vs---~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  449 INATAVCVS---FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK  525 (910)
T ss_pred             cceEEEEEe---ccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence            456666666   47999999999999999999999888888   479999999999999999999999999999999999


Q ss_pred             cEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676           94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      ..+..+....++..+.++....+++.+..|-.|+++|..+.+. .+++..|...++.++|+|++.++++++ .|++||+|
T Consensus       526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~w  603 (910)
T KOG1539|consen  526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTW  603 (910)
T ss_pred             ceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEE
Confidence            9888888888999999999999999999999999999876543 455667889999999999988877654 56999999


Q ss_pred             ECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC-C-CcEEEEECCCc
Q 024676          174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-G-SSVKFWDANHF  218 (264)
Q Consensus       174 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-~~i~iwd~~~~  218 (264)
                      |+.++.++..+....+..++.+||+|.||++.. | ..|.+|-.+..
T Consensus       604 Dlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl  650 (910)
T KOG1539|consen  604 DLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL  650 (910)
T ss_pred             eccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence            999999999898889999999999999998754 4 68999987653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=1.6e-20  Score=155.14  Aligned_cols=242  Identities=16%  Similarity=0.187  Sum_probs=183.2

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      .+|-+-|.++..+.   ..+++.||++ |-|+|||+..-   ..+..+.  ...+.|+++...+|+..|++|+.-.++-|
T Consensus       416 L~HGEvVcAvtIS~---~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi  491 (705)
T KOG0639|consen  416 LAHGEVVCAVTISN---PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI  491 (705)
T ss_pred             hccCcEEEEEEecC---CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence            36888888887764   5678888875 67899998653   2333333  35678999999999999999999999999


Q ss_pred             EeCCCCcEEEEeecCC---eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           88 WDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        88 wd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ||+.+.......+...   ....++.+|+.+++++|+.||.|.+||+.... ..+++..|.....|+..++++ +-+-++
T Consensus       492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dG-tklWTG  569 (705)
T KOG0639|consen  492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDG-TKLWTG  569 (705)
T ss_pred             eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCC-ceeecC
Confidence            9998765433333222   46778999999999999999999999998654 345666788888999988655 556677


Q ss_pred             eCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEE
Q 024676          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (264)
                      +-|++||-||+|+++.+......+.|.++-++|++.+++.+ .++.+.+....+-+.-.-........+.-|.+ .|++|
T Consensus       570 GlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwf  648 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWF  648 (705)
T ss_pred             CCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCcee
Confidence            77899999999999988877888899999999999998876 45677776655433211111122334555666 59999


Q ss_pred             EEecCCCeEEEEEcCcce
Q 024676          244 IAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~  261 (264)
                      ++-|.|..+..|.+--|.
T Consensus       649 vStGkDnlLnawrtPyGa  666 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGA  666 (705)
T ss_pred             eecCchhhhhhccCcccc
Confidence            999999999999865443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=7.5e-20  Score=150.93  Aligned_cols=235  Identities=15%  Similarity=0.239  Sum_probs=179.7

Q ss_pred             CeeeeEeccCCCCCeEEEEEe--CCCCcEEEeCC--CCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           18 PVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGE--TGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s--~d~~v~i~~~~--~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      .+..+.|+.    .++|++++  .|+.+++|--.  +++  .++...|.  .-.|++......++++|+..+.|+|||+.
T Consensus        36 g~~s~~w~~----~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~  109 (673)
T KOG4378|consen   36 GDFSFNWQR----RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLR  109 (673)
T ss_pred             cceeeeccc----cceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhH
Confidence            466777773    33455555  46667777433  232  23444443  33455555566899999999999999998


Q ss_pred             CCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ...+.+.+ .|+..|+++.|+-.+.++++++..|.|-+..+.++......-......+.-+.|++...+++.+++++|.|
T Consensus       110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V  189 (673)
T KOG4378|consen  110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV  189 (673)
T ss_pred             HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence            65544444 48889999999999999999999999999998776543333333456777889999899999999999999


Q ss_pred             EEEECCCCceeEEe--cCCCCEEEEEEcCCCc-EEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676          171 RLWDARSGKIVQTL--ETKSPVTSAEVSRDGR-YITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG  246 (264)
Q Consensus       171 ~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~-~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (264)
                      .+||.....++..+  .+..|...++|+|.+. +|++ +-|..|.+||++.....+.+....+....+|.+ .|.+|++|
T Consensus       190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG  268 (673)
T KOG4378|consen  190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAG  268 (673)
T ss_pred             EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEee
Confidence            99999988887666  3567888999999874 4444 558999999999888888887777777777776 59999999


Q ss_pred             cCCCeEEEEEcCc
Q 024676          247 GEDMWVHVFDFHT  259 (264)
Q Consensus       247 s~d~~v~vwd~~~  259 (264)
                      ...|.|+.||++.
T Consensus       269 ~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  269 NSKGELIAYDMRS  281 (673)
T ss_pred             cCCceEEEEeccc
Confidence            9999999999863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6.3e-19  Score=154.59  Aligned_cols=205  Identities=15%  Similarity=0.214  Sum_probs=163.6

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      +.|.....|...|.+++..     +++|++|+.+++|.+|....++.-..+..-+-+++.++|+.+|.++|.||.|-.||
T Consensus        47 e~P~ti~~~g~~v~~ia~~-----s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK  121 (933)
T KOG1274|consen   47 EEPETIDISGELVSSIACY-----SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVK  121 (933)
T ss_pred             cCCchhhccCceeEEEeec-----ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEE
Confidence            3444444577888887664     45899999999999998887764333444557899999999999999999999999


Q ss_pred             EEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-------CCCCeEEEEEecCCC
Q 024676           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-------SSGSIRTVAWLHSDQ  158 (264)
Q Consensus        87 iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~  158 (264)
                      +-++........+ .|..+|.++.|+|++++|++.+-||.+++||+.++......-+-       ....+...+|.|+++
T Consensus       122 ~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g  201 (933)
T KOG1274|consen  122 LLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG  201 (933)
T ss_pred             EEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence            9999887655555 58999999999999999999999999999999876543322111       122356678999989


Q ss_pred             eEEEEeeCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCC
Q 024676          159 TILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTAD-GSSVKFWDANH  217 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~  217 (264)
                      .+++.+.+ +.|++|+..+.+....+..   ++.+..++|+|+|+||+++. ++.|-|||..+
T Consensus       202 ~la~~~~d-~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  202 TLAVPPVD-NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eEEeeccC-CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            88887765 8999999999887766642   34489999999999998876 89999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.3e-20  Score=168.50  Aligned_cols=246  Identities=15%  Similarity=0.226  Sum_probs=188.0

Q ss_pred             cCCCeeeeEeccCCCC-CeEEEEEeCCCCcEEEeCCC---C---ceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEE
Q 024676           15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGET---G---DWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAK   86 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~-g~~l~t~s~d~~v~i~~~~~---~---~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~   86 (264)
                      -...-+.|+|.+.-.+ --.+|.|..||.|.+||...   +   ..+.+++-|++.|+.+.|++... .||+|+.||.|.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            3445678889863211 01489999999999999865   2   34677888999999999998765 899999999999


Q ss_pred             EEeCCCCcEEEEe---ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC-CCCeEEEEEecCCCeEE
Q 024676           87 LWDALTGDEKHSF---EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        87 iwd~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~  161 (264)
                      |||++..+.-..+   ...+.|.+++|+. ..++|++++.++.+.+||++..+.+....... ...+..++|.|++-+.+
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            9999875432333   2345799999988 45778888999999999998775444333222 24578899999988877


Q ss_pred             EEeeCCC---eEEEEECCCCc-eeEEec-CCCCEEEEEEcCCC-cEE-EEeCCCcEEEEECCCceeeeEEecCCC-Ccee
Q 024676          162 SSCTDSG---GVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMPCN-TESA  233 (264)
Q Consensus       162 ~~~~~d~---~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~  233 (264)
                      +++++|.   .|.+||+|-.. .++.++ |...|.++.|++.. .++ +++.|+.|.+|+.++++.+..+....+ ....
T Consensus       223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv  302 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV  302 (1049)
T ss_pred             eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee
Confidence            7777654   59999998643 556664 44569999999977 554 456799999999999999988876433 3456


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      .|.++....|++++-||.|-||.+..+
T Consensus       303 ~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  303 QWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             eecCCCcchhhhheeccceeeeeeecC
Confidence            788888889999999999999987644

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=3.5e-19  Score=154.78  Aligned_cols=219  Identities=20%  Similarity=0.287  Sum_probs=174.8

Q ss_pred             EEEEe-CCCCcEEEeCCCCce-EEeee-----CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe----ecC
Q 024676           34 LVSAS-KDSSPMLRNGETGDW-IGTFE-----GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF----EHK  102 (264)
Q Consensus        34 l~t~s-~d~~v~i~~~~~~~~-~~~~~-----~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~~  102 (264)
                      ++++. .+..++-|+...... ...|.     .-...+.+++.++.|.+.+.|+..|+|-++++.+|.....|    .|.
T Consensus       414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~  493 (910)
T KOG1539|consen  414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK  493 (910)
T ss_pred             eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence            34444 445678898765432 11222     22367899999999999999999999999999999877777    689


Q ss_pred             CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE
Q 024676          103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ  182 (264)
Q Consensus       103 ~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~  182 (264)
                      .+|++++.+.-++.+++++.+|.++.||..+.......  ....++.++.+.-..+ +++.+.+|-.|+++|..|.+.++
T Consensus       494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l--~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL--RLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             CceeEEEecCCCceEEEccCcceEEEEecCCcceeeee--ccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhhH
Confidence            99999999999999999999999999999765533222  2334555655543333 45555677899999999999999


Q ss_pred             Eec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCC-CeEEEEE
Q 024676          183 TLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED-MWVHVFD  256 (264)
Q Consensus       183 ~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-~~v~vwd  256 (264)
                      .+. +.+.++..+|||||++++++ -|++|++||+.++.++..+.....+.+..++|+ |++|++...| .-|++|-
T Consensus       571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn-gD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN-GDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC-CCEEEEEEecCceEEEEE
Confidence            887 56779999999999998765 489999999999999999999888889999985 9999999998 7799994

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=8.6e-20  Score=146.70  Aligned_cols=201  Identities=17%  Similarity=0.288  Sum_probs=147.2

Q ss_pred             eeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcE--------EEEeecCCeEEEEEECCC-CCEEEEeeCCCc
Q 024676           56 TFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE--------KHSFEHKHIVRACAFSED-THLLLTGGFEKI  125 (264)
Q Consensus        56 ~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~--------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~  125 (264)
                      .+.||+++|..++|.|-+ .-+||||.|.+|+||.+-.+..        .....|...|..++|||. .+.|+|++.|++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            467999999999999855 4579999999999999865422        222348889999999994 578899999999


Q ss_pred             EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcEEE
Q 024676          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYIT  203 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~  203 (264)
                      +.+||+.+++.....  .|...+.+++|+.++.. +++...|..|||||.++++.+..-..+  .....+.|-.+|.+++
T Consensus       156 v~iWnv~tgeali~l--~hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL--DHPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEEeccCCceeeec--CCCCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            999999998765443  38889999999986665 555567799999999999988766432  2234455777888777


Q ss_pred             Ee----CCCcEEEEECCCcee-e--eEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          204 TA----DGSSVKFWDANHFGL-V--KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       204 ~~----~~~~i~iwd~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ++    +++.+-+||..+.+. +  ..........---+.++.+-+.++|=.|+.||.|.++.
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            66    357899999887643 2  22222222222223343344556788899999998764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.3e-19  Score=149.55  Aligned_cols=205  Identities=14%  Similarity=0.174  Sum_probs=172.3

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecC--CeEEEEE
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACA  109 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~v~~~~  109 (264)
                      .|+++|+..+.|.|||+......+.+++|+..|.+|.+..+..++|+++..|-|.|-.+.++.....+.+.  ..|+.+.
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~  171 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR  171 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence            79999999999999999855566788999999999999999999999999999999999998777777654  4688999


Q ss_pred             ECCCCCEEE-EeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC
Q 024676          110 FSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS  188 (264)
Q Consensus       110 ~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~  188 (264)
                      |+|..+.++ +++.+|.+.+||+............|..+...++|+|.++.++++.+.|..|.+||.++.+....+....
T Consensus       172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~  251 (673)
T KOG4378|consen  172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH  251 (673)
T ss_pred             cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence            999876655 5789999999999877766677777889999999999999999999999999999999888877788888


Q ss_pred             CEEEEEEcCCCcEEEEeC-CCcEEEEECCCc-eeeeEEecCC-CCceeeEc
Q 024676          189 PVTSAEVSRDGRYITTAD-GSSVKFWDANHF-GLVKGYNMPC-NTESASLE  236 (264)
Q Consensus       189 ~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~-~~~~~~~~  236 (264)
                      |...++|+++|.+|+++. .|.|..||+|.. .++.....+. ...+++|.
T Consensus       252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence            999999999999988765 589999999865 3454443322 23344444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.4e-19  Score=141.68  Aligned_cols=201  Identities=15%  Similarity=0.181  Sum_probs=152.1

Q ss_pred             CCeeeeEeccCC--CCC--eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC--CcEEEEecCCCeEEEEeC
Q 024676           17 RPVVDLFYSPIT--PDG--FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDA   90 (264)
Q Consensus        17 ~~v~~~~~~~~~--~~g--~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v~iwd~   90 (264)
                      .+-.++.+.|..  .+|  ..+|++-..++|++||..++..++.|++|.+.+..++|..+  ...+.+|+.||+||+||+
T Consensus        22 ~~~~~Lk~~~q~~~~~~~e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~  101 (376)
T KOG1188|consen   22 NEDFCLKYDIQEQVKDGFETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI  101 (376)
T ss_pred             cccceeeccchhhhccCcceeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence            344567775422  233  46888999999999999999999999999999999999763  355789999999999999


Q ss_pred             CCCcEEEEee---cC-CeEEEEEECCCCCEEEEee----CCCcEEEeeCCCCCCCC-eEeccCCCCeEEEEEecCCCeEE
Q 024676           91 LTGDEKHSFE---HK-HIVRACAFSEDTHLLLTGG----FEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        91 ~~~~~~~~~~---~~-~~v~~~~~~~~~~~l~s~~----~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      +.......+.   ++ .+..+++.+-.++++++|+    .+-.+.+||++..+... .....|..-|+++.|.|.+..++
T Consensus       102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL  181 (376)
T KOG1188|consen  102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL  181 (376)
T ss_pred             ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence            8865444432   22 3556666555677777664    35568899998765533 33456888999999999999999


Q ss_pred             EEeeCCCeEEEEECCCCce----eEEecCCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCC
Q 024676          162 SSCTDSGGVRLWDARSGKI----VQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANH  217 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~  217 (264)
                      ++|+-||.|.|||++....    +..++..+.|.++.|..++  +...-+...+..+|+++.
T Consensus       182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence            9999999999999986532    3455666779999999887  544445667888888764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.84  E-value=8.3e-18  Score=139.18  Aligned_cols=229  Identities=14%  Similarity=0.197  Sum_probs=174.1

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc--
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--   94 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~--   94 (264)
                      +-|.++.|.+   +|+. +||..+|.+.||+..+.+..++...|.+.|.+++...+|.++ ||++|..|-.||-.-.+  
T Consensus       247 k~Vl~v~F~e---ngdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r  321 (626)
T KOG2106|consen  247 KFVLCVTFLE---NGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLR  321 (626)
T ss_pred             eEEEEEEEcC---CCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccc
Confidence            5788999996   7764 799999999999998887777666999999999999999776 59999999999831110  


Q ss_pred             ---------E------------------------------EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC
Q 024676           95 ---------E------------------------------KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (264)
Q Consensus        95 ---------~------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~  135 (264)
                               .                              +....|......++.+|+...+++++.|+.+++|+-  .+
T Consensus       322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k  399 (626)
T KOG2106|consen  322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HK  399 (626)
T ss_pred             cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--Cc
Confidence                     0                              011125556778999999999999999999999992  23


Q ss_pred             CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEE
Q 024676          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWD  214 (264)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd  214 (264)
                      .....+  ...+..++.|-|.+  .++.+...|...+.|.++...+..-....+++.+.++|+|.+|+.+ .|+.|.||-
T Consensus       400 ~~wt~~--~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~  475 (626)
T KOG2106|consen  400 LEWTKI--IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR  475 (626)
T ss_pred             eeEEEE--ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            333322  34567788877766  5666777799999999997665554557889999999999998765 589999998


Q ss_pred             CCCc----eeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          215 ANHF----GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       215 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +...    ..+..+.. ....-+.|++ ++++|.+-|-|--+..|...
T Consensus       476 Vs~~g~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  476 VSANGRKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             ECCCCcEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEEccc
Confidence            7542    23333333 3445567777 58999999999999999543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=5.2e-20  Score=144.79  Aligned_cols=203  Identities=25%  Similarity=0.367  Sum_probs=144.6

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee---eCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~---~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      -..+.||-..|++|+|+|.-|  ++|+++|.|.++|+|++.+..++..|   +||++.|.++.|+.++.+++|++.|.++
T Consensus       128 ~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhsl  205 (385)
T KOG1034|consen  128 SKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSL  205 (385)
T ss_pred             ccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceE
Confidence            344579999999999999544  79999999999999999999988776   5699999999999999999999999999


Q ss_pred             EEEeCCCCcEEE------Ee-----------------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC
Q 024676           86 KLWDALTGDEKH------SF-----------------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA  136 (264)
Q Consensus        86 ~iwd~~~~~~~~------~~-----------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~  136 (264)
                      ++|++...+...      .+                       -|..+|.++.|-  +.++++-+-++.|..|....-+.
T Consensus       206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e  283 (385)
T KOG1034|consen  206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEE  283 (385)
T ss_pred             EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhh
Confidence            999987432111      11                       023333333332  57889988889999997521111


Q ss_pred             C-------------CeEeccCCCCeEEEEEe-cCCCeEEEEeeCCCeEEEEECCCCceeE--Ee---cCCCCEEEEEEcC
Q 024676          137 P-------------PREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGVRLWDARSGKIVQ--TL---ETKSPVTSAEVSR  197 (264)
Q Consensus       137 ~-------------~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~---~~~~~v~~~~~s~  197 (264)
                      .             ...+.-.++.++-+.|. ..-+..++.+...|.|.+||++..++..  ++   .....|...+||.
T Consensus       284 ~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~  363 (385)
T KOG1034|consen  284 SIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR  363 (385)
T ss_pred             hhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc
Confidence            1             11112233455555543 1223345566677999999999876521  12   2345689999999


Q ss_pred             CCcEEE-EeCCCcEEEEEC
Q 024676          198 DGRYIT-TADGSSVKFWDA  215 (264)
Q Consensus       198 ~~~~l~-~~~~~~i~iwd~  215 (264)
                      |+.+|+ ..++++|.-||-
T Consensus       364 dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  364 DGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             cCcEEEEEeCCCcEEEEEe
Confidence            998765 467889998884

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.82  E-value=4.3e-18  Score=145.43  Aligned_cols=253  Identities=19%  Similarity=0.267  Sum_probs=185.7

Q ss_pred             eeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--------------------e-EEe-------
Q 024676            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--------------------W-IGT-------   56 (264)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--------------------~-~~~-------   56 (264)
                      ++.....+.||++-|..|+|+....+.-+||++|+|..||||.+.-+.                    . ..+       
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            567777789999999999999877767899999999999999653211                    0 111       


Q ss_pred             ---eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-----------------------------EE--------
Q 024676           57 ---FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----------------------------EK--------   96 (264)
Q Consensus        57 ---~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------------------------~~--------   96 (264)
                         +.||++.|+++.|+|.+..|.|+|.|+++.+|.-....                             .+        
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence               24899999999999999889999999999999742220                             00        


Q ss_pred             -EEe---------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc---CCCCeEEEEEecCC
Q 024676           97 -HSF---------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---SSGSIRTVAWLHSD  157 (264)
Q Consensus        97 -~~~---------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~  157 (264)
                       +.+               .|.+.|..+.|+|.|++|++.+.|.+=|+|-....+....++.-   |.-.+.|+++.+. 
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-  418 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-  418 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence             000               15567999999999999999999999999875422323333321   3445788888764 


Q ss_pred             CeEEEEeeCCCeEEEEECCC----------C----------------------ceeE---------------Ee------
Q 024676          158 QTILSSCTDSGGVRLWDARS----------G----------------------KIVQ---------------TL------  184 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~----------~----------------------~~~~---------------~~------  184 (264)
                      ...+++|.+...+|+|+...          +                      +.+.               +.      
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            56788888888999997531          0                      0000               00      


Q ss_pred             ------------------------cCCCCEEEEEEcCCCcEEEEeC------CCcEEEEECCCceeeeEEecCCC-Ccee
Q 024676          185 ------------------------ETKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCN-TESA  233 (264)
Q Consensus       185 ------------------------~~~~~v~~~~~s~~~~~l~~~~------~~~i~iwd~~~~~~~~~~~~~~~-~~~~  233 (264)
                                              .+...|.+++.+|++++++++-      -..|++|+..+...++.+..+.. ...+
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                                    0013689999999999998752      13599999999887776665543 4567


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      .|+| ++++|++.|-|+++.+|....
T Consensus       579 ~FSp-dg~~LLsvsRDRt~sl~~~~~  603 (764)
T KOG1063|consen  579 AFSP-DGRYLLSVSRDRTVSLYEVQE  603 (764)
T ss_pred             EECC-CCcEEEEeecCceEEeeeeec
Confidence            7777 599999999999999998643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=4e-18  Score=132.60  Aligned_cols=239  Identities=21%  Similarity=0.361  Sum_probs=168.9

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC---CCcEEEEecCCCeEEEEeC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDA   90 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~---~~~~l~s~s~D~~v~iwd~   90 (264)
                      +|+-.|..+-|-|+  |.-++.++|-|+++++||.++.+....|. -++.|++-+++|   ...++|+|-+|-.||+-|+
T Consensus        99 ~Hky~iss~~WyP~--DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi  175 (397)
T KOG4283|consen   99 GHKYAISSAIWYPI--DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI  175 (397)
T ss_pred             cceeeeeeeEEeee--cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence            79999999999995  44578999999999999999988766665 346788888887   3567899999999999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCC------------CC--CeEeccCCCCeEEEEEe
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPD------------AP--PREVGNSSGSIRTVAWL  154 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~------------~~--~~~~~~~~~~i~~~~~~  154 (264)
                      .+|....++. |...|..+.|+|... .|++|+.|+.||+||++...            .+  .+....|.+.++.++|.
T Consensus       176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            9999888875 889999999999665 46678999999999997531            11  11233467889999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEECCCCcee-EEe---cCC---CCEEEEEEcCCC-cEEEEeCCCcEEEEECCCceeeeEEec
Q 024676          155 HSDQTILSSCTDSGGVRLWDARSGKIV-QTL---ETK---SPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~---~~~---~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~~~~~~~~~  226 (264)
                      +++.+ +++++-|..+++|...+|+-. ..+   .++   .+-.-+. +.+. .++..-.++.+.++++-.++.++.+..
T Consensus       256 Sd~~~-l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~  333 (397)
T KOG4283|consen  256 SDARY-LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST  333 (397)
T ss_pred             ccchh-hhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence            87665 455566689999999887632 111   111   1111122 2222 232233346777777777777766665


Q ss_pred             CCC-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          227 PCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +.. ..+..+.++. +...+|+-|+.++-|-..
T Consensus       334 h~k~i~c~~~~~~f-q~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  334 HLKRINCAAYRPDF-EQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             ccceeeEEeecCch-hhhhccccCCcccccccc
Confidence            533 2333444443 446788889999988653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.2e-18  Score=138.78  Aligned_cols=240  Identities=18%  Similarity=0.170  Sum_probs=180.3

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC------ceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------DWIGTFE-GHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~------~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      ++|++.|++|.|+.   ++++||+|+.|..+++|+++..      +.++... .|+..|.+++|.....++.+|..+++|
T Consensus        53 ~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   53 REHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            69999999999995   7999999999999999988642      3343332 377899999999999999999999999


Q ss_pred             EEEeCCCCcEEEEeecCC---eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe--EeccCCCCeEEEEEecCCCeE
Q 024676           86 KLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      .+-|+++.+.+..+.|..   .|+.+..+|..+++++.+.++.+.+||.+.......  ...........+.|.|....+
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999999988888776   899999999999999999999999999876542222  222334456677788888889


Q ss_pred             EEEeeCCCeEEEEECCCCc-eeEE------ecC-CCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCcee-eeEEecC---
Q 024676          161 LSSCTDSGGVRLWDARSGK-IVQT------LET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGL-VKGYNMP---  227 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~-~~~~------~~~-~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~-~~~~~~~---  227 (264)
                      +++.+..+.+.+||.+..+ .+..      ++. ...+.+..|+|+|.-+.+-. ..--.+||+-...+ +-.+..+   
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            9999988999999998754 2211      111 23457788999997665544 33446778766433 2223211   


Q ss_pred             ----CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          228 ----CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       228 ----~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                          +...+.+|..  .+-+++||.+-.+++|.+
T Consensus       290 Y~N~~T~KS~~F~~--D~~v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  290 YCNIKTIKSMTFID--DYTVATGSDHWGIHIWKL  321 (609)
T ss_pred             ceeeeeeeeeeeec--ceeeeccCcccceEEEec
Confidence                1222334443  455999999999999975

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=3.2e-18  Score=144.19  Aligned_cols=239  Identities=19%  Similarity=0.251  Sum_probs=170.5

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEEEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLW   88 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~iw   88 (264)
                      .+++||++.|.+|.-.|   .|.+|++|+.||++|||.+.+|.+++++.- .+.|.+|+|.|.... ++..+....+-|-
T Consensus       394 lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence            45689999999997775   899999999999999999999999887652 347999999986542 2222223334444


Q ss_pred             eCCCC--------------------------------------cEEEEeecCCeEEEEEECCCCCEEEEeeCC---CcEE
Q 024676           89 DALTG--------------------------------------DEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILR  127 (264)
Q Consensus        89 d~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~  127 (264)
                      +..-|                                      .....+.|.++|+.+.||..|.+|++...+   ..+.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            32111                                      012344577889999999999999987653   4577


Q ss_pred             EeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCc-EEEEe
Q 024676          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGR-YITTA  205 (264)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~-~l~~~  205 (264)
                      ++++.+...+ ..+....+.+..+.|.|....++ .++. ..|+|||+..++.+..+... ..+.+++++|+|. +++++
T Consensus       550 iHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lf-VaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  550 IHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLF-VATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             EEeccccccc-CchhhcCCceeEEEecCCCceEE-EEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence            8888655433 23334566777777766555544 4455 78999999988777666544 4588999999985 45566


Q ss_pred             CCCcEEEEECCCc-eeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          206 DGSSVKFWDANHF-GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       206 ~~~~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      -++.+..+|+.-. ++.++...+.. ..+.+++++ -.+|++|+.|+++.||.
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEe
Confidence            6899999998643 34445544443 345667765 46899999999999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=2e-16  Score=134.39  Aligned_cols=246  Identities=32%  Similarity=0.495  Sum_probs=181.9

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeC-CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKL   87 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~-d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~i   87 (264)
                      ....+|...|..+.|+|   ++.++++++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.+++
T Consensus       149 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         149 RTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             EEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            44578999999999996   7778888885 99999999999888889999999999999999987 6666699999999


Q ss_pred             EeCCCCcEEE-Eee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           88 WDALTGDEKH-SFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        88 wd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      ||...+.... .+. |...+ ...|+|++..+++++.|+.+++|+++...........+...+.++.+.|....+++ ++
T Consensus       226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~  303 (466)
T COG2319         226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GS  303 (466)
T ss_pred             EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-ee
Confidence            9988777666 333 44443 33799999889999999999999987554312222345678888888885666665 66


Q ss_pred             CCCeEEEEECCCCceeEEec--CC-CCEEEEEEcCCCcE-EEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCC
Q 024676          166 DSGGVRLWDARSGKIVQTLE--TK-SPVTSAEVSRDGRY-ITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~--~~-~~v~~~~~s~~~~~-l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (264)
                      .|+.+++||.++........  .+ ..+..+.+.+++.. ..+ ..++.+++|+....................+.+ . 
T Consensus       304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  381 (466)
T COG2319         304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-  381 (466)
T ss_pred             CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-
Confidence            66889999999887665543  33 35888888434233 344 356889999998776322222222234555555 4 


Q ss_pred             CEEEE-ecCCCeEEEEEcCccee
Q 024676          241 NIFIA-GGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       241 ~~~~~-gs~d~~v~vwd~~~g~~  262 (264)
                      ..+.. ++.++.+.+|+......
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~  404 (466)
T COG2319         382 GRVVSSGSTDGTVRLWDLSTGSL  404 (466)
T ss_pred             CCEEEEecCCCceEEEecccCee
Confidence            44444 89999999999887654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=1.9e-16  Score=134.53  Aligned_cols=247  Identities=26%  Similarity=0.453  Sum_probs=183.9

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-eEEeeeCCc-CCEEEEEE-CCCCc-EEEEe-cCCCeE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHK-GAVWSCCL-DANAL-FSASG-SADFTA   85 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~~H~-~~V~~v~~-~~~~~-~l~s~-s~D~~v   85 (264)
                      ...+|...+..+.|.+   .+..++.++.|+.+.+|+...+. .+..+.++. ..+..+.+ .+++. .++.. ..|+.+
T Consensus        60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence            3468999999999996   77888999999999999998886 667777644 36777777 77776 55544 449999


Q ss_pred             EEEeCCC-CcEEE-EeecCCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           86 KLWDALT-GDEKH-SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        86 ~iwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      ++||... ..... ...|...|..+.++|+++.+++++. |+.+++|++..+.. ......|...+.+++|.+.+..+++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~  215 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-LSTLAGHTDPVSSLAFSPDGGLLIA  215 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce-EEeeccCCCceEEEEEcCCcceEEE
Confidence            9999987 44333 4458888999999999998888885 99999999976333 2333347789999999976665666


Q ss_pred             EeeCCCeEEEEECCCCceeE-EecCCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCCcee-eeEEecC-CCCceeeEcCC
Q 024676          163 SCTDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL-VKGYNMP-CNTESASLEPK  238 (264)
Q Consensus       163 ~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~-~~~~~~~-~~~~~~~~~~~  238 (264)
                      +++.|+.|++||.+.+.... .+..+.......++|++.+++ ++.++.+++|+++.... +..+..+ .......+.| 
T Consensus       216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  294 (466)
T COG2319         216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-  294 (466)
T ss_pred             EecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-
Confidence            66888999999999887776 455443322227999986655 56689999999986654 4444222 2334455666 


Q ss_pred             CCCEEEEecCCCeEEEEEcCccee
Q 024676          239 LGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .+..+++++.|+.+++||..++..
T Consensus       295 ~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         295 DGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             CCCEEEEeeCCCcEEEEEcCCCce
Confidence            467777799999999998876653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.82  E-value=6.3e-17  Score=134.01  Aligned_cols=235  Identities=19%  Similarity=0.247  Sum_probs=172.3

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE---EeeeCC-cCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~---~~~~~H-~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      +.|....|+|+  |-+.+++.++ +.+.+|+.+++.+.   ..|+.+ +.-|.+++|.+++.- +||..+|++.||+..+
T Consensus       201 e~v~~a~FHPt--d~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~  276 (626)
T KOG2106|consen  201 EVVFLATFHPT--DPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGT  276 (626)
T ss_pred             ceEEEEEeccC--CCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCC
Confidence            45668999995  4567777765 56789999988654   457665 467999999999875 7999999999999876


Q ss_pred             Cc-EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE-------------------------------
Q 024676           93 GD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-------------------------------  140 (264)
Q Consensus        93 ~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~-------------------------------  140 (264)
                      .. .++...|...|.+++.-.++.+ ++|+.|++|-.||-+-......+                               
T Consensus       277 ~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt  355 (626)
T KOG2106|consen  277 NRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT  355 (626)
T ss_pred             ceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence            54 2334478999999999999975 56999999999983211000000                               


Q ss_pred             --------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEE
Q 024676          141 --------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKF  212 (264)
Q Consensus       141 --------~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~i  212 (264)
                              ...|..+.+.++..| ...++++|+.|+++++|+  ..+.+.+.....+..++.|+|.|..+++...+.--+
T Consensus       356 ~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  356 LENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFV  432 (626)
T ss_pred             ecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEE
Confidence                    011223445555443 445677889999999999  566777777778999999999994444445677778


Q ss_pred             EECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      .|.++...+....-.++.....+.| .|.+||.||.|+.|++|.++.+
T Consensus       433 ~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  433 LDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCC
Confidence            8999877666555555555566666 6999999999999999988643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4.5e-18  Score=133.41  Aligned_cols=192  Identities=15%  Similarity=0.229  Sum_probs=145.6

Q ss_pred             EEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676           64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        64 V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (264)
                      ..++.|++-|.++|.|..||.|-|||+.+....+.+ .|-.||.+++|+++|+.|+|+|.|..|++||+.++....+.. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            678999999999999999999999999987755554 488999999999999999999999999999999888655544 


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC--ceeEEecC---CCCEEEEEEcCCCcEEEEeC-CCcEEEEECC
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLET---KSPVTSAEVSRDGRYITTAD-GSSVKFWDAN  216 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~  216 (264)
                       ...+++.+.|.|.....++++--+..-.+-++..+  +++..-..   +.......|.+-|+++.++. -|.+.++|..
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence             45689999999877665554443344444444432  22211111   11222345888999988776 4899999999


Q ss_pred             CceeeeEEecCC-C-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          217 HFGLVKGYNMPC-N-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       217 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +.+++..+.+.. . ...+.+ +..|+.|+.-.+|+.||.|+..
T Consensus       184 t~e~vas~rits~~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIV-SRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             hheeeeeeeechheeeeEEEE-eccCcEEEEecCCceEEEEehh
Confidence            999999998754 3 334444 4469999999999999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.1e-17  Score=139.91  Aligned_cols=236  Identities=17%  Similarity=0.278  Sum_probs=168.9

Q ss_pred             Eeec-cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           11 VCHG-HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        11 ~~~~-h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      +.+| ..+.|-+|+|+    +|..|.+.+.+|+|.-||+.+++.+..++.-.++|++++.+|.+..++.|+.||.+.+.+
T Consensus        63 vi~g~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   63 VIHGPEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             EEecCCCCceeeEEEc----cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence            3455 44588899999    456788999999999999999999888888889999999999999999999999777777


Q ss_pred             CCCCcEEEE--e-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC---eEecc----CCCCeEEEEEecCCCe
Q 024676           90 ALTGDEKHS--F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGN----SSGSIRTVAWLHSDQT  159 (264)
Q Consensus        90 ~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~----~~~~i~~~~~~~~~~~  159 (264)
                      ...+.....  + ..+..+.++.|+|++..+++|+.|+.|++||..++....   ++...    ...-++++.+.. +. 
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~-  216 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DS-  216 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cC-
Confidence            776654332  2 245789999999999999999999999999998765433   01111    223467777774 33 


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCc-e---eeeEEecCCC-Cce
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHF-G---LVKGYNMPCN-TES  232 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~-~---~~~~~~~~~~-~~~  232 (264)
                      .++++...|+|++||...+..++.+. +...|.+++.++++..+ .++-|+.|--+...+. .   .......+.+ ..+
T Consensus       217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs  296 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS  296 (691)
T ss_pred             cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence            45566667999999999999887775 45679999999997554 4555765544444322 2   2222222222 222


Q ss_pred             eeEcCCCCCEEEEecCCCeEEEE
Q 024676          233 ASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                      .+..   +..+++||.|..+.+=
T Consensus       297 ~av~---~~~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  297 MAVI---ENALISGGRDFTLAIC  316 (691)
T ss_pred             eeee---cceEEecceeeEEEEc
Confidence            3322   3367777777666553

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.5e-17  Score=128.80  Aligned_cols=200  Identities=18%  Similarity=0.292  Sum_probs=143.0

Q ss_pred             eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc----EEEEe-ecCCeEEEEEECC--CCCEEEEeeCCCcEEEee
Q 024676           58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD----EKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFD  130 (264)
Q Consensus        58 ~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d  130 (264)
                      .+|.+-|+++.|.+-|+++||||.|++|+|||.....    +...+ .|...|..+.|.+  -|+.+++|+.|+++++|+
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            4799999999999999999999999999999975432    22233 3788888888844  589999999999999997


Q ss_pred             CC-----CCCCC---CeEeccCCCCeEEEEEecCC-CeEEEEeeCCCeEEEEECCCCc------eeEEec--------CC
Q 024676          131 LN-----RPDAP---PREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGK------IVQTLE--------TK  187 (264)
Q Consensus       131 ~~-----~~~~~---~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~d~~v~iwd~~~~~------~~~~~~--------~~  187 (264)
                      -.     .....   ...+....+.+..+.|.|.. +..+++++.||.+|||+.-.--      .++.++        .+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            41     11111   12334556789999998764 4468889999999999875432      222222        34


Q ss_pred             CCEEEEEEcCCC---cEEEEeCCC------cEEEEECCCc----eeeeEEe-cCCCCceeeEcCCCC---CEEEEecCCC
Q 024676          188 SPVTSAEVSRDG---RYITTADGS------SVKFWDANHF----GLVKGYN-MPCNTESASLEPKLG---NIFIAGGEDM  250 (264)
Q Consensus       188 ~~v~~~~~s~~~---~~l~~~~~~------~i~iwd~~~~----~~~~~~~-~~~~~~~~~~~~~~~---~~~~~gs~d~  250 (264)
                      .+..|+.|+|.-   .+|+.+.+.      .+.||.....    ..+..+. .......++|.|+.|   +++++++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            567888898753   466666554      7888876432    2233332 345566788888766   5789999999


Q ss_pred             eEEEEEcC
Q 024676          251 WVHVFDFH  258 (264)
Q Consensus       251 ~v~vwd~~  258 (264)
                       |+||+++
T Consensus       250 -v~I~~v~  256 (361)
T KOG2445|consen  250 -VRIFKVK  256 (361)
T ss_pred             -EEEEEEe
Confidence             9999986

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.80  E-value=2.4e-18  Score=147.64  Aligned_cols=204  Identities=20%  Similarity=0.236  Sum_probs=158.9

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCC--cEEEEecCCCeEEEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANA--LFSASGSADFTAKLW   88 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~--~~l~s~s~D~~v~iw   88 (264)
                      ...|..+|.||.|+-.-...++||++|.|+.|.|+|+..+ .+++++.+|+..|.++.|...+  ..+++++.|+.++ +
T Consensus       497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-F  575 (1080)
T KOG1408|consen  497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-F  575 (1080)
T ss_pred             eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-e
Confidence            3689999999999975555689999999999999999654 5788999999999999998766  6689999999775 4


Q ss_pred             eCCCC--cEEEEeec-----CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec--cCCCCeEEEEEecCCCe
Q 024676           89 DALTG--DEKHSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        89 d~~~~--~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~  159 (264)
                      ++...  ......+|     ...++.+++.|+.+++++++.|+.|++||+.+++......+  .+.+....+..-|.+-+
T Consensus       576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY  655 (1080)
T KOG1408|consen  576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY  655 (1080)
T ss_pred             ehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE
Confidence            54431  11111122     23578899999999999999999999999998875544433  24566777776665554


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCC
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANH  217 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~  217 (264)
                      ++.+| .|+++.++|..+|+++..+-++ ..|+.+.|.+|-++|.+ +.|+-|-+|.+..
T Consensus       656 ~atSc-sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  656 LATSC-SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEEee-cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            44444 5699999999999999877554 55999999999887654 6689999999853

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.7e-17  Score=130.35  Aligned_cols=194  Identities=20%  Similarity=0.322  Sum_probs=145.2

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC--
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT--   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~--   92 (264)
                      |.-+|-.+--.   ..+.+++++|.|..|.+|++. |+.++.+......-+..+++|+|.++++++-.--|++|+.--  
T Consensus       186 h~v~~i~iGiA---~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k  261 (420)
T KOG2096|consen  186 HQVDIINIGIA---GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK  261 (420)
T ss_pred             cccceEEEeec---CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence            55555444333   467899999999999999998 888888766555566788999999999999988999998632  


Q ss_pred             -Cc---EEEEe---ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC----CCCe------EeccCCCCeEEEEEec
Q 024676           93 -GD---EKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD----APPR------EVGNSSGSIRTVAWLH  155 (264)
Q Consensus        93 -~~---~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~----~~~~------~~~~~~~~i~~~~~~~  155 (264)
                       |.   ..+.+   .|...|...+|++++..+++.+.||++|+||.+-..    -+..      ..-...+...-+.++|
T Consensus       262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP  341 (420)
T KOG2096|consen  262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP  341 (420)
T ss_pred             CcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence             21   22222   388899999999999999999999999999985211    1100      0001123334567788


Q ss_pred             CCCeEEEEeeCCCeEEEEECCCCceeEEec--CCCCEEEEEEcCCCcEEEEeCCCcEEEEE
Q 024676          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (264)
Q Consensus       156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd  214 (264)
                      +++.+.++ .. ..++++..++++....++  +...|.++.|+++|+++++..|+.+++.-
T Consensus       342 ~g~~lA~s-~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  342 SGDSLAVS-FG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             CCcEEEee-cC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence            77755544 33 579999999998776664  45679999999999999998899988865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=1.3e-17  Score=129.51  Aligned_cols=196  Identities=16%  Similarity=0.256  Sum_probs=154.1

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---eEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDA   90 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~   90 (264)
                      +-.|++.-.|+...|  +++.++|-|-++.|||++++.   ....+-.|...|+.++|..++ ..+||.+.||+||++|+
T Consensus       149 ~~aPlTSFDWne~dp--~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDP--NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             cCCcccccccccCCc--ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            556888888887544  799999999999999999873   345678899999999999866 56799999999999999


Q ss_pred             CCCcE-EEEee---cCCeEEEEEECCCC-CEEEEeeCC-CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           91 LTGDE-KHSFE---HKHIVRACAFSEDT-HLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        91 ~~~~~-~~~~~---~~~~v~~~~~~~~~-~~l~s~~~d-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      +..+- ...++   ...+..-++|++++ +++++-..| ..|.+.|++.+..+...+..|++.|+.++|.|.....+++|
T Consensus       227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta  306 (364)
T KOG0290|consen  227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA  306 (364)
T ss_pred             cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence            87642 22233   24567788898865 556664444 67999999988877777888999999999999999999999


Q ss_pred             eCCCeEEEEECCCC------ceeEEecCCCCEEEEEEcCC-CcEEEEeCCCcEEE
Q 024676          165 TDSGGVRLWDARSG------KIVQTLETKSPVTSAEVSRD-GRYITTADGSSVKF  212 (264)
Q Consensus       165 ~~d~~v~iwd~~~~------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~i~i  212 (264)
                      ++|.++.|||+.+-      .++..+.....|+.+.|+|. +..++...+..+.|
T Consensus       307 GDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  307 GDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             CCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence            99999999999752      12334455678999999965 46777776666554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=2.5e-17  Score=138.83  Aligned_cols=205  Identities=24%  Similarity=0.303  Sum_probs=154.8

Q ss_pred             EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE-EEEeeCCCcEEEeeCCC
Q 024676           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNR  133 (264)
Q Consensus        55 ~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~~~d~~~  133 (264)
                      ..|.||++.|+++...+.|..+++|+.||+||||.+.++.++.++.....|.+++|+|.+.+ ++++..+.++.+.+-.-
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            35689999999999999999999999999999999999999999999999999999996543 33444444454443211


Q ss_pred             CCC------------------------------------CCeEeccCCCCeEEEEEecCCCeEEEEeeCC--CeEEEEEC
Q 024676          134 PDA------------------------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDA  175 (264)
Q Consensus       134 ~~~------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~v~iwd~  175 (264)
                      +..                                    -....-.+..++..+.|.-.|.++.+++.++  ..|.|.++
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence            100                                    0001112345677788877777766655533  46889999


Q ss_pred             CCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCc-eeeEcCCCCCEEEEecCCCeEE
Q 024676          176 RSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVH  253 (264)
Q Consensus       176 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~v~  253 (264)
                      .+++.+..+. .+..+..+.|+|...++..+..+.|+|||+...+.++.....+... ..+.++ .|+-|+.|+.|+.+.
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~  632 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMC  632 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeE
Confidence            8887766663 4567999999999877777777899999999988888776655544 456666 588999999999999


Q ss_pred             EEEcCcc
Q 024676          254 VFDFHTG  260 (264)
Q Consensus       254 vwd~~~g  260 (264)
                      .||++-+
T Consensus       633 WfDldls  639 (733)
T KOG0650|consen  633 WFDLDLS  639 (733)
T ss_pred             EEEcccC
Confidence            9998754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.8e-18  Score=140.71  Aligned_cols=213  Identities=20%  Similarity=0.248  Sum_probs=157.1

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECC--CCcEEEEecCCCeEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDA--NALFSASGSADFTAK   86 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~--~~~~l~s~s~D~~v~   86 (264)
                      ..+.||++.|+||+|+.   +|.+|++||.|--+.|||.-..+++..+. ||.+.|.++.|-|  ....++||+.|+.|+
T Consensus        44 ~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            34579999999999995   99999999999999999998777777765 8999999999987  456789999999999


Q ss_pred             EEeCCCCc----------EEEEe-ecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEec---------cCC
Q 024676           87 LWDALTGD----------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG---------NSS  145 (264)
Q Consensus        87 iwd~~~~~----------~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~---------~~~  145 (264)
                      ++|+....          ..+.+ .|...|-.++..|++ +.+.+++.||+|+-+|++.+..-.....         ..-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            99987421          12222 367778888889987 8888999999999999986422111100         001


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCeEEEEECCC--------Cc----------eeEEecC-----C--------CCEEEEE
Q 024676          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS--------GK----------IVQTLET-----K--------SPVTSAE  194 (264)
Q Consensus       146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--------~~----------~~~~~~~-----~--------~~v~~~~  194 (264)
                      -+..++..+|...++++.|+.|-..++||.|.        +.          |+.-+..     .        .-++-++
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            24567888999999999998889999999431        11          2222210     0        1145678


Q ss_pred             EcCCCcEEEEe-CCCcEEEEECCCceeeeEEe
Q 024676          195 VSRDGRYITTA-DGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       195 ~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~  225 (264)
                      |+|||.-+..+ .+..|.++|+...+....|.
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence            99999765554 45689999998766554443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=1e-16  Score=139.33  Aligned_cols=244  Identities=15%  Similarity=0.086  Sum_probs=171.8

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEe----eeCCcCCEEEEEECCCC--cEEEEecCCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGT----FEGHKGAVWSCCLDANA--LFSASGSADF   83 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~----~~~H~~~V~~v~~~~~~--~~l~s~s~D~   83 (264)
                      ..-=..+|.++.|+|..|  ++||.|..+|+|-+||...+..  ...    ...|+.+|..+.|..+-  .-++|+|.||
T Consensus       238 ~~~~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG  315 (555)
T KOG1587|consen  238 VLESPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG  315 (555)
T ss_pred             EEecCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC
Confidence            333456899999999654  6999999999999999987754  222    24599999999997544  3488999999


Q ss_pred             eEEEEeCCCCcE------EEEee-------cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCC-------CeEec
Q 024676           84 TAKLWDALTGDE------KHSFE-------HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP-------PREVG  142 (264)
Q Consensus        84 ~v~iwd~~~~~~------~~~~~-------~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~-------~~~~~  142 (264)
                      .|+.|++.--..      .....       ....++.+.|.+ +...++.|+.+|.|..-+....+..       .....
T Consensus       316 ~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~  395 (555)
T KOG1587|consen  316 SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI  395 (555)
T ss_pred             cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc
Confidence            999998653211      11111       123578888988 4466778888998876332221111       22334


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCceeEEecCCC-CEEEEEEcCCC-cEEEEe-CCCcEEEEECCC-
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKIVQTLETKS-PVTSAEVSRDG-RYITTA-DGSSVKFWDANH-  217 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~~~~~~~~~-~v~~~~~s~~~-~~l~~~-~~~~i~iwd~~~-  217 (264)
                      .|.+.+.++.++|=...++.+++ |-+|+||... ...++..+..+. .+..++|||-- ..+++. .+|.+.|||+.. 
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             ccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            56788999999887777777777 5899999987 566666665443 49999999985 334444 479999999964 


Q ss_pred             -ceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          218 -FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       218 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                       .+++.+...........+.+..|+.+++|.+.|.+++|++.
T Consensus       475 ~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  475 DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             ccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence             45555554443333333444459999999999999999984

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=3.1e-17  Score=129.16  Aligned_cols=219  Identities=19%  Similarity=0.317  Sum_probs=158.8

Q ss_pred             CCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC--CcCC---EEEEEECCCCcEEEEecCCCeEEEEeC-CCCc---EEE
Q 024676           27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGA---VWSCCLDANALFSASGSADFTAKLWDA-LTGD---EKH   97 (264)
Q Consensus        27 ~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~--H~~~---V~~v~~~~~~~~l~s~s~D~~v~iwd~-~~~~---~~~   97 (264)
                      ..|+-+++++.++|.-|.+||.-+|++...+++  |.+.   ..+++|+|||.+|..| ....||++|+ +.|.   ...
T Consensus       119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~  197 (406)
T KOG2919|consen  119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT  197 (406)
T ss_pred             CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchh
Confidence            347788999999999999999999999888875  5443   3789999999998754 5678999998 5554   222


Q ss_pred             Eeec-----CCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           98 SFEH-----KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        98 ~~~~-----~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      ++.+     ...+.+++++| +.+.++.++..+.+-+|.-...+ +....+.|.+.|+.++|.+++..+++++--+.+|.
T Consensus       198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL  276 (406)
T ss_pred             hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence            3333     45678899999 55688889999998888865544 45566789999999999999988888777778999


Q ss_pred             EEECCCC-ceeEEecCC----CCEEEEEEcCCCcEEEEe-CCCcEEEEECCC-ceeeeEEecCCC-CceeeEcCCCCCEE
Q 024676          172 LWDARSG-KIVQTLETK----SPVTSAEVSRDGRYITTA-DGSSVKFWDANH-FGLVKGYNMPCN-TESASLEPKLGNIF  243 (264)
Q Consensus       172 iwd~~~~-~~~~~~~~~----~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  243 (264)
                      .||+|.- ..+..+..+    +.-......|.+++|+++ .+|.|++||+.+ ++.+..+..... .+..+++|- =.++
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpil  355 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPIL  355 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-ccee
Confidence            9999864 344444322    222335667999999987 589999999988 454555543222 233444442 3455


Q ss_pred             EEecC
Q 024676          244 IAGGE  248 (264)
Q Consensus       244 ~~gs~  248 (264)
                      +++|.
T Consensus       356 atssG  360 (406)
T KOG2919|consen  356 ATSSG  360 (406)
T ss_pred             eeccC
Confidence            55554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.5e-17  Score=136.23  Aligned_cols=212  Identities=19%  Similarity=0.248  Sum_probs=164.7

Q ss_pred             cceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC
Q 024676            3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (264)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D   82 (264)
                      ..|+.+.....|+...  .++.-..++++++|+..+..|.|.+-...+++++.+|+ -.+.|..++|+.|++.++..+.+
T Consensus       289 ~ak~~k~~~~~g~e~~--~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~  365 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEK--SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGT  365 (514)
T ss_pred             ccccccccCCCCcccc--hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence            3455555555666643  34455567899999999999999999999999988887 45789999999999999888899


Q ss_pred             CeEEEEeCCCCcEEEEeecCCeE--EEEEECCCCCEEEEeeCCCcEEEeeCCCCC-----CCCeEeccCCCCeEEEEEec
Q 024676           83 FTAKLWDALTGDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKILRIFDLNRPD-----APPREVGNSSGSIRTVAWLH  155 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~i~~~~~~~  155 (264)
                      |.|.+||+++..+++.+.....|  +.+|.++++.+|++|+..|.++|||.++-.     .+...+.+....|..++|+|
T Consensus       366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~  445 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH  445 (514)
T ss_pred             ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence            99999999999999998877766  457778999999999999999999965321     12223344556789999998


Q ss_pred             CCCeEE-EEeeCCCeEEEEECCCCceeEEecCC----CCEEEEEEcCCCcEEEEeC-CCcEEEEECCC
Q 024676          156 SDQTIL-SSCTDSGGVRLWDARSGKIVQTLETK----SPVTSAEVSRDGRYITTAD-GSSVKFWDANH  217 (264)
Q Consensus       156 ~~~~~~-~~~~~d~~v~iwd~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~  217 (264)
                      +.+.+. ++-..+..+|+-=+.+..+...+...    .-++|++|||++-+++.+. ++.+.+|.+..
T Consensus       446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~h  513 (514)
T KOG2055|consen  446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHH  513 (514)
T ss_pred             chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeecc
Confidence            766542 22334568999988888887777543    3589999999998888776 68999998754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=1.6e-18  Score=150.84  Aligned_cols=243  Identities=18%  Similarity=0.278  Sum_probs=178.1

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      +.||...|+|+.|.-   .|.++++||.|..++||+.+++.+++...||++.|..++.+....+++++|.|..|++|.+.
T Consensus       186 LlgH~naVyca~fDr---tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDR---TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHhhhhheeeeeecc---ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            479999999999984   79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC-CCCC-CCeE------------eccC------------
Q 024676           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDA-PPRE------------VGNS------------  144 (264)
Q Consensus        92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~-~~~~-~~~~------------~~~~------------  144 (264)
                      .+.++..+ .|+..|++++|+|-.    +.+.|+++++||.+ .... ....            +...            
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~  338 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG  338 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence            99877765 489999999999965    67899999999976 1100 0000            0000            


Q ss_pred             CC---CeEEEEEe----------cCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEE--EEeCCC
Q 024676          145 SG---SIRTVAWL----------HSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYI--TTADGS  208 (264)
Q Consensus       145 ~~---~i~~~~~~----------~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l--~~~~~~  208 (264)
                      ..   ...+.+|.          .+...+.+++-.+-.+.+|.+.+|+.++... +..++.-+.++|=+..+  .++-||
T Consensus       339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg  418 (1113)
T KOG0644|consen  339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG  418 (1113)
T ss_pred             ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence            00   00111111          1111222233334567889999998777654 44568889999866544  356689


Q ss_pred             cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ..-|||+-.+.+++.|..+.....-..++.+|..++..-.-|.+++..+..|+
T Consensus       419 st~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  419 STIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             ceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            99999999999988887653333323333457778877777888888765543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=7.4e-17  Score=125.25  Aligned_cols=244  Identities=20%  Similarity=0.238  Sum_probs=174.2

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCC-------CcEEEeCCCC---------ceEEeee-CCcCCEEEEEECCCC
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDS-------SPMLRNGETG---------DWIGTFE-GHKGAVWSCCLDANA   73 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~-------~v~i~~~~~~---------~~~~~~~-~H~~~V~~v~~~~~~   73 (264)
                      ++.-|.++|+.|+-+|.  +.+.|+|+..|.       .+-||.+...         +.+..+. .|-+.|.++.|.|++
T Consensus        58 vf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            44568899999999994  567888876642       2467876432         2233343 345689999999999


Q ss_pred             cEEEEecCCCeEEEEeCCCCcE-EEEe------ecCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC
Q 024676           74 LFSASGSADFTAKLWDALTGDE-KHSF------EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNS  144 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~~~~-~~~~------~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~  144 (264)
                      ..+++.. |..|.+|++..+.. .+.+      ++....++-.|+|  +++.++ ...|+++..||+++..........|
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAH  213 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAH  213 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhh
Confidence            9988776 78899999987754 3332      2455677888998  555554 5578999999999766555555567


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEecCC-CCEEEEEEcCCC-cE-EEEeCCCcEEEEECCCce-
Q 024676          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLETK-SPVTSAEVSRDG-RY-ITTADGSSVKFWDANHFG-  219 (264)
Q Consensus       145 ~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~-~~v~~~~~s~~~-~~-l~~~~~~~i~iwd~~~~~-  219 (264)
                      ...+..+.|+|+-++++++|++|+.|||||.|+-+ ++.++..+ ..+-++.|+|.. ++ |++++|..|.+|....-. 
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS  293 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS  293 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence            77899999999999999999999999999999755 56666544 468899999864 34 455678889888753210 


Q ss_pred             ----------------------------eeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          220 ----------------------------LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       220 ----------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                                                  .+.+|.-++. .....+++.+.=+|++=|.||.+.|=++.
T Consensus       294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                        1123322222 22455666666789999999999886653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=3.1e-17  Score=140.28  Aligned_cols=201  Identities=22%  Similarity=0.268  Sum_probs=151.0

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCC-----cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSS-----PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~-----v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      -||--+|.+|+-+|   +|+++|++.+...     |++|+..+=..++.+.+|+-.|..++|+||+++|++.|+|+++.+
T Consensus       522 YGHGyEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  522 YGHGYEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL  598 (764)
T ss_pred             ccCceeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence            59999999999886   8999999977654     677887665556679999999999999999999999999999999


Q ss_pred             EeCCCCcE-----EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC--CCCCe-EeccCCCCeEEEEEecCCC-
Q 024676           88 WDALTGDE-----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPR-EVGNSSGSIRTVAWLHSDQ-  158 (264)
Q Consensus        88 wd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~-~~~~~~~~i~~~~~~~~~~-  158 (264)
                      |.......     .....|...|..+.|+|++++++|+|.|+++++|.....  ....+ ....+...++.+++.+... 
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~  678 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN  678 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence            98744321     112348888999999999999999999999999998765  22222 2344667888898876443 


Q ss_pred             ---eEEEEeeCCCeEEEEECCCCcee-----EEe--------cCCCCEEEEEEcCC---------C-c-EEEEeCCCcEE
Q 024676          159 ---TILSSCTDSGGVRLWDARSGKIV-----QTL--------ETKSPVTSAEVSRD---------G-R-YITTADGSSVK  211 (264)
Q Consensus       159 ---~~~~~~~~d~~v~iwd~~~~~~~-----~~~--------~~~~~v~~~~~s~~---------~-~-~l~~~~~~~i~  211 (264)
                         .+++.|...|.|.+|........     ..+        .+...|+.+.|.|-         + . +.++++|..+|
T Consensus       679 e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vr  758 (764)
T KOG1063|consen  679 EKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVR  758 (764)
T ss_pred             cccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeE
Confidence               37889999999999985421110     111        12245888888864         1 2 24556788899


Q ss_pred             EEECC
Q 024676          212 FWDAN  216 (264)
Q Consensus       212 iwd~~  216 (264)
                      ++++.
T Consensus       759 i~nv~  763 (764)
T KOG1063|consen  759 IFNVD  763 (764)
T ss_pred             Eeecc
Confidence            98753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.4e-16  Score=137.75  Aligned_cols=210  Identities=19%  Similarity=0.179  Sum_probs=143.7

Q ss_pred             CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE
Q 024676           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (264)
                      +..+.+||..... .+.+..|...+.+.+|+||++.++..+.+   ..|.+||+.+++...............|+|+++.
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4678889886444 55677788899999999999998877654   4799999988764333222333456899999998


Q ss_pred             EEEee-CCCcEEEe--eCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC--CceeEEecCCCCEE
Q 024676          117 LLTGG-FEKILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS--GKIVQTLETKSPVT  191 (264)
Q Consensus       117 l~s~~-~d~~i~~~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~v~  191 (264)
                      |+.++ .++.+.+|  |+.++.  ...+..+...+....|+|++..++.++..++..+||++..  +.. ..+....  .
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~~--~  336 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGRG--Y  336 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecCCC--C
Confidence            88764 67776665  554443  2334344556777899998887777766678888887643  322 2222222  4


Q ss_pred             EEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          192 SAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       192 ~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      +..++|||++++......+.+||+.+++... +..........+.| ++++++.++.++.+++|.+
T Consensus       337 ~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~-lt~~~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        337 SAQISADGKTLVMINGDNVVKQDLTSGSTEV-LSSTFLDESPSISP-NGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CccCCCCCCEEEEEcCCCEEEEECCCCCeEE-ecCCCCCCCceECC-CCCEEEEEEcCCCceEEEE
Confidence            5789999998876554567779998875432 21112224456777 5899999999998888874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=8.4e-15  Score=122.69  Aligned_cols=237  Identities=16%  Similarity=0.178  Sum_probs=152.7

Q ss_pred             CCeeeeEeccCCCCCeEEEEEe-CCCCcEEEeCC-CCce--EEeeeCCcCCEEEEEECCCCcEEEEec-CCCeEEEEeCC
Q 024676           17 RPVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGE-TGDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDAL   91 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s-~d~~v~i~~~~-~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s-~D~~v~iwd~~   91 (264)
                      +....+.++|   ++++|++++ .++.+.+|+.. ++++  +.... ..+....++++|+++++++++ .++.|.+|++.
T Consensus        35 ~~~~~l~~sp---d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~  110 (330)
T PRK11028         35 GQVQPMVISP---DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLD  110 (330)
T ss_pred             CCCccEEECC---CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence            3445677775   888886664 57788889886 4443  22222 223456799999999887655 48899999986


Q ss_pred             C-C---cEEEEeecCCeEEEEEECCCCCEEEEee-CCCcEEEeeCCCCCCCC----e-EeccCCCCeEEEEEecCCCeEE
Q 024676           92 T-G---DEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPP----R-EVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        92 ~-~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~----~-~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      + +   .......+......++++|+++++++++ .++.|.+||+++.....    . ...........+++.|++..++
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence            4 2   1223333334467788999999887665 46999999997532111    0 1111223456788888888777


Q ss_pred             EEeeCCCeEEEEECCC--Cc--eeEEecC-------CCCEEEEEEcCCCcEEEEeC--CCcEEEEECCCc----eeeeEE
Q 024676          162 SSCTDSGGVRLWDARS--GK--IVQTLET-------KSPVTSAEVSRDGRYITTAD--GSSVKFWDANHF----GLVKGY  224 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~--~~--~~~~~~~-------~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~----~~~~~~  224 (264)
                      ++...+++|.+||++.  ++  .+..+..       ......+.++|+++++.++.  ++.|.+|++...    +.+...
T Consensus       191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~  270 (330)
T PRK11028        191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ  270 (330)
T ss_pred             EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence            7766679999999973  33  2333321       11233588999999876653  578999998543    233433


Q ss_pred             ecCCCCceeeEcCCCCCEEEE-ecCCCeEEEEEcC
Q 024676          225 NMPCNTESASLEPKLGNIFIA-GGEDMWVHVFDFH  258 (264)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-gs~d~~v~vwd~~  258 (264)
                      .....+..+.++++ |+++++ ...+++|.+|+++
T Consensus       271 ~~~~~p~~~~~~~d-g~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        271 PTETQPRGFNIDHS-GKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eccccCCceEECCC-CCEEEEEEccCCcEEEEEEc
Confidence            33445566778875 665555 4459999999764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.9e-16  Score=141.21  Aligned_cols=241  Identities=15%  Similarity=0.260  Sum_probs=160.9

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCC---cCCEEEEEECC--CCcEEEEecCCCeEEEEeCCC
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH---KGAVWSCCLDA--NALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H---~~~V~~v~~~~--~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      +-.-+.|+|..|   .++++.....|+|||-+.++.+..|..+   ...|..+.+-.  |..++.+|+.||.||||+-..
T Consensus      1066 ~pk~~~~hpf~p---~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP---QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCceeeecCCCc---eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            345678888766   5677776667899999999987777654   34677787754  456789999999999997433


Q ss_pred             C-----cEEEEee--------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           93 G-----DEKHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        93 ~-----~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      .     +.+..+.        ..+.-..+.|.++..+|++++.-+.|++||..+..............++.+.-....+.
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence            2     1222221        01112456788887788888888999999997654332222233444555544434567


Q ss_pred             EEEEeeCCCeEEEEECCCCce---eEEec-CCC--CEEEEEEcCCC--cEEEEeCCCcEEEEECCCceeeeEEec-----
Q 024676          160 ILSSCTDSGGVRLWDARSGKI---VQTLE-TKS--PVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNM-----  226 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~---~~~~~-~~~--~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~-----  226 (264)
                      ++++|..||.|++||.|....   +..+. ++.  +|..+.+.++|  .+++++.+|.|++||+|.......+.+     
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence            888888899999999986542   23332 333  38888888876  456677899999999987432222222     


Q ss_pred             -CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceeeC
Q 024676          227 -PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG  264 (264)
Q Consensus       227 -~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i~  264 (264)
                       .........+. ...++++|+. +.|.||++ .|++++
T Consensus      1303 yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~-~G~~l~ 1338 (1387)
T KOG1517|consen 1303 YGSALTALTVHE-HAPIIASGSA-QLIKIYSL-SGEQLN 1338 (1387)
T ss_pred             cCccceeeeecc-CCCeeeecCc-ceEEEEec-Chhhhc
Confidence             22233344444 5788999998 99999997 477653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.75  E-value=7.4e-17  Score=137.79  Aligned_cols=237  Identities=17%  Similarity=0.244  Sum_probs=168.2

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      .++||++.|++++|+.   ||..+|+|+.|+.|++|+..- +  +.++ .|.+.|.++.|.|-...++|++-.- .-+|.
T Consensus        48 tLKgHKDtVycVAys~---dGkrFASG~aDK~VI~W~~kl-E--G~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS  120 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAK---DGKRFASGSADKSVIIWTSKL-E--GILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWS  120 (1081)
T ss_pred             ccccccceEEEEEEcc---CCceeccCCCceeEEEecccc-c--ceeeeccCCeeeEeecCchHHHhhhcchhh-ccccC
Confidence            3589999999999994   999999999999999998642 2  2232 3999999999999999999887553 55787


Q ss_pred             CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCCC----eEEEEe
Q 024676           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQ----TILSSC  164 (264)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~----~~~~~~  164 (264)
                      ..+... ...+....+.+++|..+|++++-|-.+|+|.+-+-...+. .....+..+.++++++|+|..+    .++++.
T Consensus       121 ~~qK~V-~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~  199 (1081)
T KOG1538|consen  121 PEQKSV-SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA  199 (1081)
T ss_pred             hhhhhH-HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence            654322 2222345688999999999999999999999987433222 2334466788999999998643    244444


Q ss_pred             eCCCeEEEEECCCCceeE-EecCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEe-cCCCCceeeEcCCCCC
Q 024676          165 TDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGN  241 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~  241 (264)
                      .-..++..+.+. |+.+. .-..+-...++.+.|||.|+ +++.++.+++|- |.+-.+.+.. ...-.-+....|+ ++
T Consensus       200 DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN-sQ  276 (1081)
T KOG1538|consen  200 DWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN-SQ  276 (1081)
T ss_pred             eccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC-Cc
Confidence            555666666665 33332 22333456789999999886 456788888875 3333333331 2233345566675 88


Q ss_pred             EEEEecCCCeEEEEEcC
Q 024676          242 IFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~  258 (264)
                      +++.|..||++-.|++.
T Consensus       277 ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  277 YVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             eEEEEEccCeeehhhhH
Confidence            99999999999999864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=2.2e-16  Score=127.57  Aligned_cols=124  Identities=23%  Similarity=0.350  Sum_probs=102.8

Q ss_pred             eeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC--------C-----C---ceEEeeeCCcCCEEEEE
Q 024676            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--------T-----G---DWIGTFEGHKGAVWSCC   68 (264)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~--------~-----~---~~~~~~~~H~~~V~~v~   68 (264)
                      +++---.+..|...|++|+|+|   +|..||+|+.++.+.+|-..        +     .   ...+.+.+|...|+.++
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~  130 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLA  130 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhh
Confidence            4444445678999999999996   89999999999999999665        2     1   12356789999999999


Q ss_pred             ECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC
Q 024676           69 LDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (264)
Q Consensus        69 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~  131 (264)
                      |++++.++++++.|.++++||+..|.....+ .|.+.|..++|+|.++++++-+.|+..+.+.+
T Consensus       131 Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  131 WSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             ccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence            9999999999999999999999999877765 58888999999998888888777775554443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4.1e-17  Score=136.62  Aligned_cols=212  Identities=20%  Similarity=0.263  Sum_probs=142.4

Q ss_pred             ceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----------ceEEeeeCCcCCEEEEEECCCC
Q 024676            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----------DWIGTFEGHKGAVWSCCLDANA   73 (264)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----------~~~~~~~~H~~~V~~v~~~~~~   73 (264)
                      .++++.+.+++|.+||.|+...+   .+.++.+|+.||+|+.|++..+          ....+|.||.+.|+.+++++..
T Consensus       332 ~~~epi~tfraH~gPVl~v~v~~---n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~  408 (577)
T KOG0642|consen  332 KDVEPILTFRAHEGPVLCVVVPS---NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK  408 (577)
T ss_pred             cceeeeEEEecccCceEEEEecC---CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc
Confidence            35677788899999999999985   7889999999999999954321          2356789999999999999999


Q ss_pred             cEEEEecCCCeEEEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEecc--C--
Q 024676           74 LFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGN--S--  144 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~--~--  144 (264)
                      .+|+++|.||++|+|+.....+ .++.   ....-..+.+-.....+..++  ...+.+++.+.+...  .....  .  
T Consensus       409 ~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s--~~~~~~~~~~~ev~s~~~~~~s~~~~~  485 (577)
T KOG0642|consen  409 DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLAS--FRFGYTSIDDMEVVSDLLIFESSASPG  485 (577)
T ss_pred             cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhh--cccccccchhhhhhhheeeccccCCCc
Confidence            9999999999999999766554 3332   111112222222110111111  112222222111111  11100  0  


Q ss_pred             ---CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCce
Q 024676          145 ---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG  219 (264)
Q Consensus       145 ---~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~  219 (264)
                         ...+..+.+.| +.-+..++..|+.|+++|..+++.++.... ...+.++++.|+|-+|.++ .|+.+++|.+..-.
T Consensus       486 ~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  486 PRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             ccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence               11244455444 445677888999999999999999887754 4569999999999887765 58999999986555


Q ss_pred             eee
Q 024676          220 LVK  222 (264)
Q Consensus       220 ~~~  222 (264)
                      ++.
T Consensus       565 ~~~  567 (577)
T KOG0642|consen  565 CVL  567 (577)
T ss_pred             eee
Confidence            443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=1.3e-15  Score=118.49  Aligned_cols=242  Identities=17%  Similarity=0.247  Sum_probs=170.8

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCC----CCcEEE--eCCCCceEEee-eCCcCCEEEEEECCCCc-----EEEEecCCCe
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKD----SSPMLR--NGETGDWIGTF-EGHKGAVWSCCLDANAL-----FSASGSADFT   84 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d----~~v~i~--~~~~~~~~~~~-~~H~~~V~~v~~~~~~~-----~l~s~s~D~~   84 (264)
                      -++.++.|+-......+|+.||.-    +.|.|-  +.++++.+..- -.|.-++..+-|.|+..     +|||.+ | .
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-F  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-e
Confidence            367788888653345688888753    335553  44556554321 14889999999999863     456553 3 6


Q ss_pred             EEEEeCCCCcE----EEE------eecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCC--CCeEeccCCCCeEEE
Q 024676           85 AKLWDALTGDE----KHS------FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTV  151 (264)
Q Consensus        85 v~iwd~~~~~~----~~~------~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~i~~~  151 (264)
                      +|+|.+...+.    ...      -++..++++..|+. +-+++.+++-|-++.+||++++..  ...++-.|..++..+
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence            99999874221    111      12455788888887 667888999999999999998632  345666789999999


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCCCcee-EEecC---CCCEEEEEEcCCC-cEEEE-e-CCCcEEEEECCC-ceeeeE
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIV-QTLET---KSPVTSAEVSRDG-RYITT-A-DGSSVKFWDANH-FGLVKG  223 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~---~~~v~~~~~s~~~-~~l~~-~-~~~~i~iwd~~~-~~~~~~  223 (264)
                      +|...+..++++++.||.||+||+|..+-- ..++.   +.+...++++++. +++++ . +...|.|.|+|. ..++-.
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~  282 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR  282 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence            999877789999999999999999976531 12222   4567788888765 45543 3 457899999985 233444


Q ss_pred             Eec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          224 YNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       224 ~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      +.. ....+.+.+.|-....+.++|.|.++.+||+.+.
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            433 2345567788877889999999999999998653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=2.9e-14  Score=119.47  Aligned_cols=223  Identities=12%  Similarity=0.194  Sum_probs=146.8

Q ss_pred             EEEeCCCCcEEEeCCC-Cc--eEEeeeCCcCCEEEEEECCCCcEEEE-ecCCCeEEEEeCCC-CcE--EEEeecCCeEEE
Q 024676           35 VSASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDANALFSAS-GSADFTAKLWDALT-GDE--KHSFEHKHIVRA  107 (264)
Q Consensus        35 ~t~s~d~~v~i~~~~~-~~--~~~~~~~H~~~V~~v~~~~~~~~l~s-~s~D~~v~iwd~~~-~~~--~~~~~~~~~v~~  107 (264)
                      ++...|+.|++|++.+ ++  .++.+. +.+....++++|++++|+. +..++.|.+|++.. +..  ............
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            4557799999999964 43  445554 3345667899999998754 45688999999863 332  222233334678


Q ss_pred             EEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCe--EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE--
Q 024676          108 CAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--  182 (264)
Q Consensus       108 ~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--  182 (264)
                      +.++|+++++++++. ++.+.+|++++......  ...........+++.|++..++++...++.|.+||+++...+.  
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            999999999998875 78999999864321111  1111222346677888888888888888999999998733221  


Q ss_pred             -----EecCCCCEEEEEEcCCCcEEEEe-C-CCcEEEEECCC----ceeeeEEec-CC------CCceeeEcCCCCCEEE
Q 024676          183 -----TLETKSPVTSAEVSRDGRYITTA-D-GSSVKFWDANH----FGLVKGYNM-PC------NTESASLEPKLGNIFI  244 (264)
Q Consensus       183 -----~~~~~~~v~~~~~s~~~~~l~~~-~-~~~i~iwd~~~----~~~~~~~~~-~~------~~~~~~~~~~~~~~~~  244 (264)
                           ..........+.++|+|+++..+ . ++.|.+|++..    .+.+..+.. +.      ....+.++|+ +++++
T Consensus       165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd-g~~ly  243 (330)
T PRK11028        165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD-GRHLY  243 (330)
T ss_pred             CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC-CCEEE
Confidence                 12223446678999999887544 3 68999999963    233444432 11      1113556674 66666


Q ss_pred             Ee-cCCCeEEEEEcCc
Q 024676          245 AG-GEDMWVHVFDFHT  259 (264)
Q Consensus       245 ~g-s~d~~v~vwd~~~  259 (264)
                      ++ ..++.|.+|++.+
T Consensus       244 v~~~~~~~I~v~~i~~  259 (330)
T PRK11028        244 ACDRTASLISVFSVSE  259 (330)
T ss_pred             EecCCCCeEEEEEEeC
Confidence            65 4578999999754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.3e-16  Score=133.60  Aligned_cols=209  Identities=19%  Similarity=0.320  Sum_probs=148.2

Q ss_pred             EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEEEECC--CCCEEEEeeCCCcEEEe
Q 024676           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSE--DTHLLLTGGFEKILRIF  129 (264)
Q Consensus        54 ~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~  129 (264)
                      -+.+.||++-|++++|+.+|.+|+|||+|..+.|||....+.+..+.  |...|.++.|-|  +++++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            35789999999999999999999999999999999988777766664  777899999988  67899999999999999


Q ss_pred             eCCCC---------CCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeE------Ee-c---CCCC
Q 024676          130 DLNRP---------DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQ------TL-E---TKSP  189 (264)
Q Consensus       130 d~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~------~~-~---~~~~  189 (264)
                      |+...         +........|...+-.++-.|.+++.+.++++||+|+-+|+|... |-.      .+ +   .--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            99742         112222334555566677778888899999999999999998622 111      11 0   1124


Q ss_pred             EEEEEEcCCC-cEEE-EeCCCcEEEEECCC--------c----------eeeeEEec-CC-C-----------CceeeEc
Q 024676          190 VTSAEVSRDG-RYIT-TADGSSVKFWDANH--------F----------GLVKGYNM-PC-N-----------TESASLE  236 (264)
Q Consensus       190 v~~~~~s~~~-~~l~-~~~~~~i~iwd~~~--------~----------~~~~~~~~-~~-~-----------~~~~~~~  236 (264)
                      ..+++++|.. .+|+ ++++-..++||.|.        +          .+++.|.. +- +           ..-..|.
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            6688999876 3444 45677899999542        1          12333311 00 0           1123566


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          237 PKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      |++.++|++-|. ..|+++|+..++.+
T Consensus       283 pNGtElLvs~~g-EhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  283 PNGTELLVSWGG-EHVYLFDVNEDKSP  308 (758)
T ss_pred             CCCcEEEEeeCC-eEEEEEeecCCCCc
Confidence            765677777665 46999999877643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=5.1e-16  Score=126.04  Aligned_cols=191  Identities=22%  Similarity=0.206  Sum_probs=139.4

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~   99 (264)
                      ..++|++   +|..|++|+.||.+|||+-.+...+..+..|.+.|..+.|+||++++++-+.| ..+||++.++..++..
T Consensus       148 k~vaf~~---~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNG---DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcC---CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            5678885   89999999999999999977777777778899999999999999999999999 8999999999665554


Q ss_pred             ec---CCeEEEEEECCCC---CEEEEe--eCCCcEEEeeCCCCCC----CCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676          100 EH---KHIVRACAFSEDT---HLLLTG--GFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus       100 ~~---~~~v~~~~~~~~~---~~l~s~--~~d~~i~~~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      ..   ......|.|+.++   .+.+.+  ..-+.++.|++.....    .......-...+.+++.+++ +.+++.++.|
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d-Gkf~AlGT~d  302 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD-GKFLALGTMD  302 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC-CcEEEEeccC
Confidence            32   2234566777666   333333  3346677766532221    11111112336788887765 4567777778


Q ss_pred             CeEEEEECCCCceeEEec--CCCCEEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676          168 GGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~  215 (264)
                      |.|-|++..+-+.++..+  |...|+.++|+|+.+++++ +.+.++.+.-+
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            999999999988877664  3456999999999988765 44666666554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=3.9e-15  Score=120.45  Aligned_cols=157  Identities=18%  Similarity=0.271  Sum_probs=122.5

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      .||..+.|.+.+.  +.|+||+.|..|++|-++.+         +.+..+..|...|+.+.|+|+|..++||++++.|.+
T Consensus        14 ~pv~s~dfq~n~~--~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   14 EPVYSVDFQKNSL--NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CceEEEEeccCcc--cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            3788999998543  48999999999999966432         234567889999999999999999999999999999


Q ss_pred             EeCC--------C-----Cc---EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEE
Q 024676           88 WDAL--------T-----GD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (264)
Q Consensus        88 wd~~--------~-----~~---~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~  150 (264)
                      |...        +     .+   ..... .|.+.+..++|+|++.++++++.|+.+++||+..+... .....|...+..
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~-~~~~dh~~yvqg  170 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL-AILDDHEHYVQG  170 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE-eeccccccccce
Confidence            9765        2     11   11111 27778999999999999999999999999999987643 455678888999


Q ss_pred             EEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676          151 VAWLHSDQTILSSCTDSGGVRLWDARS  177 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~v~iwd~~~  177 (264)
                      ++|-|-++++. +-+.|+..+.+++..
T Consensus       171 vawDpl~qyv~-s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  171 VAWDPLNQYVA-SKSSDRHPEGFSAKL  196 (434)
T ss_pred             eecchhhhhhh-hhccCcccceeeeee
Confidence            99988766544 444556666666654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=3.9e-15  Score=132.97  Aligned_cols=242  Identities=15%  Similarity=0.154  Sum_probs=163.5

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC-CC----ceEEe---eeCC----cCCEEEEEECCCCcEEEEecCCCeE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TG----DWIGT---FEGH----KGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~-~~----~~~~~---~~~H----~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      .|..+.+-.- -|..+|++||.||.||||... ++    +++.-   ++++    .+.-.-+.|....-+|++++.-..|
T Consensus      1111 ~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1111 RVSDLELINE-QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             ccceeeeecc-cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            4666666532 356689999999999999542 22    23322   2222    2222336787766566666668899


Q ss_pred             EEEeCCCCcEEEEeec--CCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCC--CCeEeccCCCC--eEEEEEecCCC
Q 024676           86 KLWDALTGDEKHSFEH--KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGS--IRTVAWLHSDQ  158 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~  158 (264)
                      ||||.........+..  ...++.+.-+. .++.+++|..||.+++||.+....  .......|+..  |..+.+.+.+-
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            9999987776666543  34566665444 468999999999999999875433  22333445555  77777776555


Q ss_pred             eEEEEeeCCCeEEEEECCCCcee--EE----ecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC-----
Q 024676          159 TILSSCTDSGGVRLWDARSGKIV--QT----LETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP-----  227 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~--~~----~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~-----  227 (264)
                      ..+++++.+|.|++||+|.....  .+    ++..+..+++.+++....+++++.+.|+||++.... +..+..+     
T Consensus      1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~-l~~~k~n~~F~~ 1348 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ-LNIIKYNPGFMG 1348 (1387)
T ss_pred             cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh-hcccccCccccc
Confidence            56778888999999999984211  11    222345899999999999999888999999985432 2222211     


Q ss_pred             ---CCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          228 ---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       228 ---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                         ....+..|+| ..-++++|+.|.+|.||....++.
T Consensus      1349 q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1349 QRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             CcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcCC
Confidence               1234566776 467889999999999998765543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=1.2e-13  Score=110.78  Aligned_cols=233  Identities=15%  Similarity=0.151  Sum_probs=162.3

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcC--CEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~--~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~   94 (264)
                      ..+..+-|+.   +...|..|+.||. ++++.+..+.  .+.--.+  .|.-+-|+..-.-+++..+-+.+|+.++..+.
T Consensus         6 ~ti~~~~~Nq---d~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    6 PTINFIGFNQ---DSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             cceeeeeecc---ceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc
Confidence            4566666874   7789999999998 5776655432  1211122  23334455433334444444569999999888


Q ss_pred             EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc--CCCCeEEEEEecCCCeEEEE-eeCCCeEE
Q 024676           95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILSS-CTDSGGVR  171 (264)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~d~~v~  171 (264)
                      .+..+....+|.+|.++.+  .|+.+-.+. |.+||++..+........  +...+..++.++.+.++..- +...|.|.
T Consensus        80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   80 TICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             eEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            8888888888988888654  577666655 999999887665443322  22233333333333343332 23458999


Q ss_pred             EEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCC-C-cEEEEECCCceeeeEEec---CCCCceeeEcCCCCCEEEE
Q 024676          172 LWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADG-S-SVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIA  245 (264)
Q Consensus       172 iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-~-~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  245 (264)
                      |||+.+.+.+..+. |.+++.+++|+++|.+++++++ | .||++.+.+++.+..|.-   .+...+++|++ ++.+|++
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~  235 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAA  235 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEE
Confidence            99999998887775 5678999999999999988764 4 579999999998888864   34556778888 4889999


Q ss_pred             ecCCCeEEEEEcCc
Q 024676          246 GGEDMWVHVFDFHT  259 (264)
Q Consensus       246 gs~d~~v~vwd~~~  259 (264)
                      .|..++|++|.+++
T Consensus       236 sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  236 SSNTETVHIFKLEK  249 (391)
T ss_pred             ecCCCeEEEEEecc
Confidence            99999999998764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.6e-14  Score=125.11  Aligned_cols=217  Identities=16%  Similarity=0.133  Sum_probs=141.1

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCce--EEeeeCCcCCEEEEEECCCCcEEEEe-cCC
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASG-SAD   82 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~-s~D   82 (264)
                      +..+.+|..++....|+|   ||++|+.++.++   .+.+||+.+++.  +..+.+|.   ..++|+||++.++.+ +.+
T Consensus       196 ~~~lt~~~~~v~~p~wSP---DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSP---DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             ceEeccCCCccccceEcC---CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecC
Confidence            344567888899999996   999999887653   588999988753  44455553   357899999987765 568


Q ss_pred             CeEEEE--eCCCCcEEEEeecCCeEEEEEECCCCCEEEEee-CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           83 FTAKLW--DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        83 ~~v~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      +.++||  |+.++.......+...+....|+|+++.++.++ .++...+|+++......... .+.+  ....|+|++..
T Consensus       270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~  346 (429)
T PRK01742        270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT  346 (429)
T ss_pred             CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence            877766  666665544444555677899999999777655 56788888865432222333 2222  34678888777


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECC--CceeeeEEecCC-CCceeeE
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDAN--HFGLVKGYNMPC-NTESASL  235 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~--~~~~~~~~~~~~-~~~~~~~  235 (264)
                      ++.++. + .+.+||+.+++....... ....+..|+|||++++. +.++.+.+|++.  +++..+.+..+. .....+|
T Consensus       347 ia~~~~-~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w  423 (429)
T PRK01742        347 LVMING-D-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW  423 (429)
T ss_pred             EEEEcC-C-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence            665543 3 466699999876432222 23346789999988765 446666766652  455555554322 2333445


Q ss_pred             cC
Q 024676          236 EP  237 (264)
Q Consensus       236 ~~  237 (264)
                      +|
T Consensus       424 sp  425 (429)
T PRK01742        424 SP  425 (429)
T ss_pred             CC
Confidence            54

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=5.2e-14  Score=123.63  Aligned_cols=243  Identities=16%  Similarity=0.188  Sum_probs=173.0

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--Cc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      .|+..+.+.+++|   .++++|+|..||.|.+|.--.  ++  ....|.=|.+.|.+++|+++|.++.||++.+.+-+|.
T Consensus       203 ~Htf~~t~~~~sp---n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  203 HHTFNITCVALSP---NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhcccceeEEecc---ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence            5888899999996   889999999999999995432  22  2345666889999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--cc--------CCCCeEEEEEecCCCe
Q 024676           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GN--------SSGSIRTVAWLHSDQT  159 (264)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~--------~~~~i~~~~~~~~~~~  159 (264)
                      +.+++.....+...+|..+.++|++.+.+....|+.|.+....+.+.+....  ..        ..+-...++..|.-. 
T Consensus       280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-  358 (792)
T KOG1963|consen  280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-  358 (792)
T ss_pred             ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-
Confidence            9999866666788999999999999999999999999988764322211111  11        122344555555333 


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecC------------CCCEEEEEEcCCCcEEEEeC---------CC--cEEEEECC
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLET------------KSPVTSAEVSRDGRYITTAD---------GS--SVKFWDAN  216 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~---------~~--~i~iwd~~  216 (264)
                      .++-++..+.|.+||+-+.+.+..+..            .-.+..++.+..|.++++.+         ++  .+++|-..
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            344455669999999988776654421            12466677788888887652         22  47889654


Q ss_pred             ----CceeeeEEecCCCC--ceeeEcCCCCC-EEEEecCCCeEEEEEcCcc
Q 024676          217 ----HFGLVKGYNMPCNT--ESASLEPKLGN-IFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       217 ----~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~gs~d~~v~vwd~~~g  260 (264)
                          ++........|...  ....+.+.... .++++|.|+.+++|-+...
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~  489 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD  489 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence                34444444444332  23334333333 8999999999999987433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.67  E-value=1.2e-14  Score=113.07  Aligned_cols=157  Identities=21%  Similarity=0.251  Sum_probs=125.1

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce-EEee-----eCCcCCEEEEEECC--CCcEEEEecCCCeEE
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTF-----EGHKGAVWSCCLDA--NALFSASGSADFTAK   86 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~-~~~~-----~~H~~~V~~v~~~~--~~~~l~s~s~D~~v~   86 (264)
                      |-+.|.||.|.|   ++..|++-. |..|.+|+...+.. ++.+     .+|+..-.+-+|+|  ++..+++.+ |++++
T Consensus       122 avg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~  196 (370)
T KOG1007|consen  122 AVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ  196 (370)
T ss_pred             HhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEE
Confidence            445789999997   667776655 88899999876643 3332     23566667778887  666666554 88999


Q ss_pred             EEeCCCCcEEEEee--cCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           87 LWDALTGDEKHSFE--HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        87 iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      .||+++..+...++  |...|+.+.|+|+-+ +|++|+.|+.+|+||.+..+.+......|...++++.|+|....++.+
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence            99999887666664  777899999999764 577889999999999998888778888899999999999988888888


Q ss_pred             eeCCCeEEEEECC
Q 024676          164 CTDSGGVRLWDAR  176 (264)
Q Consensus       164 ~~~d~~v~iwd~~  176 (264)
                      ++.|..|.+|...
T Consensus       277 ~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  277 GGSDSAVNLSCAS  289 (370)
T ss_pred             cCCCceeEEEecc
Confidence            8888999999653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=1.4e-14  Score=131.09  Aligned_cols=215  Identities=17%  Similarity=0.258  Sum_probs=153.5

Q ss_pred             EeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCC-------cEEEEee-cCCeEEEEEECCCCCE
Q 024676           46 RNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTG-------DEKHSFE-HKHIVRACAFSEDTHL  116 (264)
Q Consensus        46 ~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~  116 (264)
                      |+.+ |.+++.+..|+..|..++.++.. .+++|||.||+||+||...-       +...++. ....+..+...+++..
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            4443 77888999999999999888765 99999999999999997542       1233443 4567888999999999


Q ss_pred             EEEeeCCCcEEEeeCCCCCCCC---e--Eec--cCCC-CeEEEEEecCCCe-EEEEeeCCCeEEEEECCCCceeEEec--
Q 024676          117 LLTGGFEKILRIFDLNRPDAPP---R--EVG--NSSG-SIRTVAWLHSDQT-ILSSCTDSGGVRLWDARSGKIVQTLE--  185 (264)
Q Consensus       117 l~s~~~d~~i~~~d~~~~~~~~---~--~~~--~~~~-~i~~~~~~~~~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~--  185 (264)
                      ++.++.||.|.+..++......   .  .+.  ...+ .+.+-++....+. .++.+..-+.|-.||.++....+..+  
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999887521111   1  111  1122 3444444444444 66777788999999999887665543  


Q ss_pred             -CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCC--CCceeeEcCCCC--CEEEE-ec-CCCeEEEEEc
Q 024676          186 -TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC--NTESASLEPKLG--NIFIA-GG-EDMWVHVFDF  257 (264)
Q Consensus       186 -~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~-gs-~d~~v~vwd~  257 (264)
                       .++.|++++.+|.+.+++.|. .|.+-+||+|-+.++..+.++.  .+.....++-.+  ...++ ++ ..+-|-+|++
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence             356799999999999887665 5889999999998888887654  333333333223  44454 44 5788999999


Q ss_pred             Ccce
Q 024676          258 HTGE  261 (264)
Q Consensus       258 ~~g~  261 (264)
                      .+|.
T Consensus      1273 ~~g~ 1276 (1431)
T KOG1240|consen 1273 ETGL 1276 (1431)
T ss_pred             ccCc
Confidence            8873

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.5e-15  Score=124.19  Aligned_cols=250  Identities=18%  Similarity=0.178  Sum_probs=182.1

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee-eCCcCCEEEEEECCC--CcEEEEecCCCeEEE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDAN--ALFSASGSADFTAKL   87 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~-~~H~~~V~~v~~~~~--~~~l~s~s~D~~v~i   87 (264)
                      .+.+|.+.|+.|.|+.   .|..|++||.|..+.+||=..+..+..| .||...|..-.|-|.  ...+++++.||.|++
T Consensus       137 kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             cccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            3468999999999995   8999999999999999998887765444 689988988888763  456899999999999


Q ss_pred             EeCCC-Cc---EEEEeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCC--eEeccCC---CCeEEEEEecCC
Q 024676           88 WDALT-GD---EKHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPP--REVGNSS---GSIRTVAWLHSD  157 (264)
Q Consensus        88 wd~~~-~~---~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~---~~i~~~~~~~~~  157 (264)
                      =.+.. +.   .++..+|..+|..++..|. .+.+++++.|+.++-+|++......  .......   -.+..++..|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            76543 32   3445579999999999995 4678899999999999997654321  1212222   246777778888


Q ss_pred             CeEEEEeeCCCeEEEEECCCCce------eEEec-------CCCCEEEEEEcCCC-cEEEEeCCCcEEEEECCC--c---
Q 024676          158 QTILSSCTDSGGVRLWDARSGKI------VQTLE-------TKSPVTSAEVSRDG-RYITTADGSSVKFWDANH--F---  218 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~~~~------~~~~~-------~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~--~---  218 (264)
                      .+.+++++.|..+++||.+.-..      +..+.       ....|++++++.++ .++++-.|-.|.++.-.-  +   
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence            88889988899999999875321      23331       12458999999665 567776778898885432  1   


Q ss_pred             -------eeeeE-EecCCCCc---eeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          219 -------GLVKG-YNMPCNTE---SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       219 -------~~~~~-~~~~~~~~---~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                             ..++. |+.+-+..   -..|..+-..|+++||.=|-|-+|+.+++++|
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence                   11223 44433322   23444334789999999999999999999876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=1.4e-15  Score=129.51  Aligned_cols=198  Identities=19%  Similarity=0.190  Sum_probs=140.5

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-------eEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLW   88 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-------~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iw   88 (264)
                      .-|..+.|+|.  |-..||.+..|+.|++|-+..+.       .-..+.+|...|.++.|+|- ...|++++.|.+|++|
T Consensus       628 t~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  628 TLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             ceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            35788999996  55689999999999999876542       23567889999999999984 4667999999999999


Q ss_pred             eCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           89 DALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        89 d~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      |+.++.....+ .|.+.|..++|+|+|+.+++.+.|+++++|+-++++....+- +.....-.-+.|-=++..++++|.+
T Consensus       706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence            99998765555 589999999999999999999999999999988776554433 2222222334555567777777653


Q ss_pred             ---CCeEEEEECCCCc--eeEEecCC--CCEEEEEEcCCCc-EEEEe-CCCcEEEEECC
Q 024676          167 ---SGGVRLWDARSGK--IVQTLETK--SPVTSAEVSRDGR-YITTA-DGSSVKFWDAN  216 (264)
Q Consensus       167 ---d~~v~iwd~~~~~--~~~~~~~~--~~v~~~~~s~~~~-~l~~~-~~~~i~iwd~~  216 (264)
                         .++|.+||.++-.  .+.+....  ..+.--.+.+|.. +++++ .|+.|..|.+-
T Consensus       786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence               2568888876533  33322211  1111112445543 34444 46789888874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=7.4e-14  Score=122.70  Aligned_cols=256  Identities=19%  Similarity=0.288  Sum_probs=184.2

Q ss_pred             CCcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC---cEEE
Q 024676            1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA---LFSA   77 (264)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~---~~l~   77 (264)
                      ||+-+.-+|..+.|-..--..-.|+   +|+++|+....+ .|.||...+|+++..+.+|.+++..+.+.|..   .++.
T Consensus         1 ~~~e~~~~~~~lgg~n~~~~~avfS---nD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~   76 (792)
T KOG1963|consen    1 MDRESGGKPALLGGRNGNKSPAVFS---NDAKFLFLCTGN-FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLI   76 (792)
T ss_pred             Cccccccceeeeccccceecccccc---cCCcEEEEeeCC-EEEEEecchHhhhhhcccccCccceeeecCCCccceEEE
Confidence            6666777777776655544445566   488888776654 68999999999999999999999999998754   4567


Q ss_pred             EecCCCeEEEEeCCCCcEEEEe----------------------------------------------------------
Q 024676           78 SGSADFTAKLWDALTGDEKHSF----------------------------------------------------------   99 (264)
Q Consensus        78 s~s~D~~v~iwd~~~~~~~~~~----------------------------------------------------------   99 (264)
                      +++-||+|++||...+..+.++                                                          
T Consensus        77 ~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~  156 (792)
T KOG1963|consen   77 VCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF  156 (792)
T ss_pred             EEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence            9999999999996443220000                                                          


Q ss_pred             ----------------------------------------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC-C
Q 024676          100 ----------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL-N  132 (264)
Q Consensus       100 ----------------------------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~-~  132 (264)
                                                                    .|...+++.++||++++++++..||.|.+|.- .
T Consensus       157 ~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~  236 (792)
T KOG1963|consen  157 LKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG  236 (792)
T ss_pred             hhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence                                                          02234577899999999999999999999963 2


Q ss_pred             --CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCCCc
Q 024676          133 --RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSS  209 (264)
Q Consensus       133 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~  209 (264)
                        ......+.+..|..++.+++|++++.+++ +|+..+.+-+|.+.+++...--...+++..+.+|||+.+. +...|+.
T Consensus       237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq  315 (792)
T KOG1963|consen  237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ  315 (792)
T ss_pred             cccccccceEEEecccccceeEEecCCceEe-ecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence              22334566677888999999999877655 5556699999999999854433567899999999999765 4567888


Q ss_pred             EEEEECCCceee---eEEecC---------CCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          210 VKFWDANHFGLV---KGYNMP---------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       210 i~iwd~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      |.+....+.+..   .++...         +-....++.|+ ...++-.+..+.|.+||+-+-+.
T Consensus       316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~  379 (792)
T KOG1963|consen  316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDST  379 (792)
T ss_pred             EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccce
Confidence            888877655443   222221         11123345554 45567777889999999876554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=7.7e-14  Score=110.01  Aligned_cols=232  Identities=15%  Similarity=0.181  Sum_probs=168.2

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ++--.+||+|.+|++   |++.+|.+-....+.||.....+   ...+++.|...|..+.|+|....++|++.|....+|
T Consensus         6 ~~~~~~pitchAwn~---drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNS---DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eeeccCceeeeeecC---CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            344567899999995   99999999999999999877665   467899999999999999999999999999999999


Q ss_pred             eCCCC-c---EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC---CCeEeccCCCCeEEEEEecCCCeEE
Q 024676           89 DALTG-D---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        89 d~~~~-~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      ....+ .   .+..++++...+++.|+|.++.+++|+.-+.|.+|=.+....   ......+....|.+++|.|++ .++
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLl  161 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLL  161 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-cee
Confidence            98443 2   344557889999999999999999999999999886653221   112223456678999998765 467


Q ss_pred             EEeeCCCeEEEEECC-----C-------------CceeEEe-cCCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCCce-e
Q 024676          162 SSCTDSGGVRLWDAR-----S-------------GKIVQTL-ETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFG-L  220 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~-----~-------------~~~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~-~  220 (264)
                      +.++-|+..|+|..-     .             |+.+.++ .....+..+.|+|+|..|+ .+.|..+.+-|...-. .
T Consensus       162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~  241 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER  241 (361)
T ss_pred             cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence            777778999999642     1             1222233 2235689999999998876 4678899888876543 3


Q ss_pred             eeEEecCCCC-ceeeEcCCCCCEEEEecCC
Q 024676          221 VKGYNMPCNT-ESASLEPKLGNIFIAGGED  249 (264)
Q Consensus       221 ~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d  249 (264)
                      +........+ .+..+..  ...+++++.|
T Consensus       242 v~~~~~~~lP~ls~~~is--e~~vv~ag~~  269 (361)
T KOG1523|consen  242 VQSVATAQLPLLSVSWIS--ENSVVAAGYD  269 (361)
T ss_pred             ccchhhccCCceeeEeec--CCceeecCCC
Confidence            3333332222 2333332  3345555555

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=9.7e-16  Score=125.89  Aligned_cols=225  Identities=20%  Similarity=0.252  Sum_probs=175.1

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  100 (264)
                      .+.|.   .+|++|+.|+.-|.+--+|-.++.+...+.- ...|+.+.|-.+..++|.+ +..-+.||| ..|..+..+.
T Consensus       134 ~~~yt---rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk  207 (545)
T KOG1272|consen  134 HLDYT---RNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK  207 (545)
T ss_pred             eeeec---CCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence            56776   4899999999999999999998887766642 3578889999888887654 566799999 4566677776


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce
Q 024676          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (264)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~  180 (264)
                      ....|..+.|-|..-+|++++..|.++.-|+..++..... ..-.+.+..+..+|-+. ++-.|...|+|.+|...+.++
T Consensus       208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcch
Confidence            6678999999999989999999999999999887754333 23456777777777654 555666779999999998887


Q ss_pred             eEEe-cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          181 VQTL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       181 ~~~~-~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      +-.+ .+.++|.++++.|+|+|+++ +-|+.++|||+|++..+.++..+......+++.   +-+++.|....|.+|.
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sq---kglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQ---KGLLALSYGDHVQIWK  360 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccc---ccceeeecCCeeeeeh
Confidence            6544 57789999999999999876 559999999999998888887655555555543   2345555666799993

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=5.3e-13  Score=115.86  Aligned_cols=215  Identities=13%  Similarity=0.077  Sum_probs=142.3

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC---CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  118 (264)
                      .+.++|.. |...+.+..|...+.+.+|+||++.++..+.   +..|.+||+.++.......+...+....|+|+++.|+
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            56677764 4445567778889999999999998876653   4689999998887654444556677889999998765


Q ss_pred             -EeeCCCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEE
Q 024676          119 -TGGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA  193 (264)
Q Consensus       119 -s~~~d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~  193 (264)
                       +.+.++.  |.+||+++++.  ..+..+.+......|+|++..++.+...++  .|.++|+.+++..............
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~  339 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP  339 (435)
T ss_pred             EEEecCCCceEEEEECCCCce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence             5555555  66678876543  333334444566789998877766544433  6888898877654433333446668


Q ss_pred             EEcCCCcEEEEe-C-C--CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCC------CeEEEEEcCcce
Q 024676          194 EVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED------MWVHVFDFHTGE  261 (264)
Q Consensus       194 ~~s~~~~~l~~~-~-~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d------~~v~vwd~~~g~  261 (264)
                      .|+|+|+.++.. . .  ..|.+||+.... .+.+..........+.|+ |++++..+.+      ..++++|++.++
T Consensus       340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spD-G~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPN-GRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             EECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCC-CCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            899999887653 2 2  368888875443 233333333455677775 6666554332      357888876544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=2.2e-12  Score=108.93  Aligned_cols=239  Identities=16%  Similarity=0.164  Sum_probs=151.6

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEe-cCCCeEEEEeCCCCcEEEEe
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALTGDEKHSF   99 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~   99 (264)
                      .+.|+   +||+++.+++.|+.+.++|+.+++.++++..-. .-+.+++++||++++++ ..++.+.++|..+.+.+..+
T Consensus        41 ~~~~s---~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   41 GLKFS---PDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             EEE-T---T-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             EEEec---CCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence            35666   599999999999999999999999998887433 34779999999988654 57899999999999888876


Q ss_pred             ec--------CCeEEEEEECCCCCEEEEeeCC-CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676          100 EH--------KHIVRACAFSEDTHLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus       100 ~~--------~~~v~~~~~~~~~~~l~s~~~d-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      +.        +..+..+..+|....++..-.| +.|-+.|......................|.|++.+++++....+.|
T Consensus       117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i  196 (369)
T PF02239_consen  117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI  196 (369)
T ss_dssp             E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred             ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence            52        2346677778888766666555 77777776544322222222334566677888888888777777789


Q ss_pred             EEEECCCCceeEEecCC-------------------------------------------------------CCEEEEEE
Q 024676          171 RLWDARSGKIVQTLETK-------------------------------------------------------SPVTSAEV  195 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-------------------------------------------------------~~v~~~~~  195 (264)
                      -++|.++++.+..+...                                                       ..-..+..
T Consensus       197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~t  276 (369)
T PF02239_consen  197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKT  276 (369)
T ss_dssp             EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE-
T ss_pred             EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeec
Confidence            99998877654322100                                                       01134555


Q ss_pred             cCCCcEEEEe----C-CCcEEEEECCCceeeeEEecCCC--CceeeEcCCCCCEEEEecC-CCeEEEEEcCcceee
Q 024676          196 SRDGRYITTA----D-GSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGE-DMWVHVFDFHTGEQI  263 (264)
Q Consensus       196 s~~~~~l~~~----~-~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs~-d~~v~vwd~~~g~~i  263 (264)
                      +|+++++...    . .++|.++|.++.+.++++.....  ..-..|++++.+..++.-. ++.|.+||.+|.+++
T Consensus       277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence            8999887554    3 36899999999988877754333  4455666653344444433 448999999998875

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=4.8e-13  Score=116.03  Aligned_cols=214  Identities=17%  Similarity=0.131  Sum_probs=139.1

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC---CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  118 (264)
                      .+.+||.. +...+.+..|...+.+.+|+||++.++..+.   +..+.+||+.++................|+|+++.++
T Consensus       185 ~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        185 ALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            57788875 4434456667788999999999998887663   3479999998887544433444455789999998765


Q ss_pred             -EeeCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe--EEEEECCCCceeEEecCCCCEEEE
Q 024676          119 -TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSA  193 (264)
Q Consensus       119 -s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~  193 (264)
                       +.+.++  .|.+||+.+++.  ..+..+.......+|+|++..++.+...++.  |.++|+.+++..............
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~  341 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQL--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA  341 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence             445554  588999877653  2333333344567899888777666544444  666787777654322222334468


Q ss_pred             EEcCCCcEEEEe--CCC--cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC---CCeEEEEEcCcc
Q 024676          194 EVSRDGRYITTA--DGS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHTG  260 (264)
Q Consensus       194 ~~s~~~~~l~~~--~~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~---d~~v~vwd~~~g  260 (264)
                      .|+|+|++++..  .++  .|.+||+.+++.. .+..........++++ |++++..+.   ...+++++++.+
T Consensus       342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spd-G~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPN-GSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCC-CCEEEEEEecCCceEEEEEECCCC
Confidence            999999887643  222  6899999776543 2322222334567774 776665554   346788887543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.5e-12  Score=112.58  Aligned_cols=212  Identities=15%  Similarity=0.152  Sum_probs=137.9

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec---CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  118 (264)
                      .+.++|..... .+.+..+...+.+.+|+||++.++..+   .+..+.+||+.+++..........+....|+|+++.|+
T Consensus       180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            56777776443 334545667899999999999887543   34579999998886544433344455689999999887


Q ss_pred             Ee-eCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE--ECCCCceeEEecCCCCEEEE
Q 024676          119 TG-GFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARSGKIVQTLETKSPVTSA  193 (264)
Q Consensus       119 s~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw--d~~~~~~~~~~~~~~~v~~~  193 (264)
                      .. +.++  .|.+||+++++.  ..+...........|+|++..++.+...++...||  |+.+++..............
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~  336 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA  336 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence            54 3344  488889876543  33333344567788999888776665544544554  77776554322223345578


Q ss_pred             EEcCCCcEEEEe-C-C--CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCe---EEEEEcC
Q 024676          194 EVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW---VHVFDFH  258 (264)
Q Consensus       194 ~~s~~~~~l~~~-~-~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~---v~vwd~~  258 (264)
                      .|+|||++++.. . +  ..|.+||+.+++. +.+..........+.| +|++++.++.++.   +++++++
T Consensus       337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEECC
Confidence            899999887543 2 2  3588899987753 2333222233556777 5888888887764   6777774

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=1.2e-13  Score=111.44  Aligned_cols=219  Identities=15%  Similarity=0.198  Sum_probs=159.4

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc----eEEeeeCCcCCEEEEEECCCC-cEEEEecCC--C
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----WIGTFEGHKGAVWSCCLDANA-LFSASGSAD--F   83 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~----~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D--~   83 (264)
                      .+.+.+++|..++..    || .|++|-.+|.+++|....+.    .+..+..+ .++..+.-.+.. .++++|+..  .
T Consensus       100 ~~~l~~~~I~gl~~~----dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA----DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN  173 (412)
T ss_pred             ccccccccccchhhc----CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence            345667777777776    44 57888999999999887553    12233333 345555555544 455779998  8


Q ss_pred             eEEEEeCCCCcEEEEeec--------CCe--EEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE
Q 024676           84 TAKLWDALTGDEKHSFEH--------KHI--VRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~--------~~~--v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~  151 (264)
                      .++|||+++..++..-..        .-|  ++.+.|-+.  ...+++++.-+.+|+||.+.++.+...+.-...++.++
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence            999999998855444321        113  356777666  77899999999999999998877777766667788888


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCCCceeEE-ecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-LET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC  228 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~  228 (264)
                      ...|.+.. +.++...+.+..||+++++.... +.. ...+.++..+|++.++++ +-|+.+||+|+.+...+.......
T Consensus       254 ~l~p~gn~-Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs  332 (412)
T KOG3881|consen  254 GLTPSGNF-IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS  332 (412)
T ss_pred             eecCCCcE-EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence            88876655 55556669999999999987655 443 467999999999999876 559999999999987776666666


Q ss_pred             CCceeeEc
Q 024676          229 NTESASLE  236 (264)
Q Consensus       229 ~~~~~~~~  236 (264)
                      ..+.+.+.
T Consensus       333 ~lt~il~~  340 (412)
T KOG3881|consen  333 RLTFILLR  340 (412)
T ss_pred             cccEEEec
Confidence            65555553

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.62  E-value=3e-14  Score=119.26  Aligned_cols=208  Identities=13%  Similarity=0.155  Sum_probs=145.9

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEEC
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS  111 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~  111 (264)
                      ..++.++.||.+.+-+- .++.-+.++.|.+.|.+-.|+|||.-++|++.||.||||.-...-.....+...+|++++|.
T Consensus        76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence            47788899998877653 35555678899999999999999999999999999999984333222223456789999999


Q ss_pred             CCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEE
Q 024676          112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVT  191 (264)
Q Consensus       112 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~  191 (264)
                      |+++.++-|-. +.+.+=.+.- .........|.|-+.++.|++.. .+++++++|-..+|||........+-.+..+|+
T Consensus       155 p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~IT  231 (737)
T KOG1524|consen  155 PNSNSIVFCQG-GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGANLFTSAAEEYAIT  231 (737)
T ss_pred             CCCCceEEecC-CeEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcccccCChhcccee
Confidence            98766665433 3444444432 22334556789999999999754 477788899999999987555444455678999


Q ss_pred             EEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676          192 SAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       192 ~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                      +++|.|+..|++.+ -.+.|+=..+.+          ....+++++ +|..+++|...|.+.+=
T Consensus       232 Sva~npd~~~~v~S-~nt~R~~~p~~G----------SifnlsWS~-DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  232 SVAFNPEKDYLLWS-YNTARFSSPRVG----------SIFNLSWSA-DGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eeeeccccceeeee-eeeeeecCCCcc----------ceEEEEEcC-CCceeeccccCceEEEe
Confidence            99999995454443 334552222211          123456776 47778888777776553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.62  E-value=3.3e-14  Score=109.34  Aligned_cols=240  Identities=16%  Similarity=0.163  Sum_probs=155.5

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-CcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      +++++++|...|.++-|-.   ++ +|.+|..-|.+.+|++.+..-+-.+++ |+..|..+.--|+ ..+.|-++|..+.
T Consensus         6 P~fvLRp~~~~v~s~~fqa---~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~   80 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQA---NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI   80 (323)
T ss_pred             CeeEeccccchheehhhcc---ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence            4567889999999999984   33 588999999999999998887777874 6778888887776 4567899999999


Q ss_pred             EEeCCCCcEEEEeecCCeEEEEEECCC-----C----CEEEEeeCCCc-EEEeeCCCCCCCCeEe-----ccCCCCeEEE
Q 024676           87 LWDALTGDEKHSFEHKHIVRACAFSED-----T----HLLLTGGFEKI-LRIFDLNRPDAPPREV-----GNSSGSIRTV  151 (264)
Q Consensus        87 iwd~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~l~s~~~d~~-i~~~d~~~~~~~~~~~-----~~~~~~i~~~  151 (264)
                      +|++..+..+..  |.-.++.+.|.+.     .    .+++.-+.... ..+-|.  +.....++     ....+.+.+.
T Consensus        81 lw~ia~s~~i~i--~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~--g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   81 LWTIAYSAFISI--HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG--GDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEEccCcceEEE--eeeeccccccccceeccCCCcchhheecCCcccchhhhhcc--CccceeEccCchhccccCceeee
Confidence            999876542221  2223333333322     1    11111111000 111111  11111111     1123455555


Q ss_pred             EEecCC--CeEEEEeeCCCeEEEEECCCCceeEEec-----------CCCC-----------------------------
Q 024676          152 AWLHSD--QTILSSCTDSGGVRLWDARSGKIVQTLE-----------TKSP-----------------------------  189 (264)
Q Consensus       152 ~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~~~~~-----------~~~~-----------------------------  189 (264)
                      .+-...  ..++++|.++|.+-+||+.++..+..++           +..+                             
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence            543322  3467788899999999999874332221           1122                             


Q ss_pred             -----------------EEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCC
Q 024676          190 -----------------VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDM  250 (264)
Q Consensus       190 -----------------v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~  250 (264)
                                       ++.+.+-||++.+++ +.|++||+|.-++..++..++.+. .....+|+|+ ..+++++|.|.
T Consensus       237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd-~~lmAaaskD~  315 (323)
T KOG0322|consen  237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD-CELMAAASKDA  315 (323)
T ss_pred             ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC-CchhhhccCCc
Confidence                             233344578888876 569999999999998877666543 4567778874 68999999999


Q ss_pred             eEEEEEc
Q 024676          251 WVHVFDF  257 (264)
Q Consensus       251 ~v~vwd~  257 (264)
                      +|-+|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9999985

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=2.6e-16  Score=137.31  Aligned_cols=204  Identities=21%  Similarity=0.313  Sum_probs=145.6

Q ss_pred             EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (264)
Q Consensus        54 ~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~  132 (264)
                      ++.+.||..+|+|+.|...+.+++||+.|..||||.+.++.++...+ |...++.++.+.++-.+++++.|..|++|-+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            45678999999999999999999999999999999999999888875 88889999999999999999999999999998


Q ss_pred             CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEE-----ecCCCCEEE---------------
Q 024676          133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-----LETKSPVTS---------------  192 (264)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-----~~~~~~v~~---------------  192 (264)
                      .+... ..+..|+|.|+.++|+|--     +.++||++++||.+=.-.+..     +.....+.+               
T Consensus       263 ~~~pv-svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  263 DGAPV-SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             CCchH-HHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            87654 3344689999999998743     567889999999881000000     000011111               


Q ss_pred             -----------EEEcCCCcEEEE------------eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEEecC
Q 024676          193 -----------AEVSRDGRYITT------------ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGE  248 (264)
Q Consensus       193 -----------~~~s~~~~~l~~------------~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~  248 (264)
                                 +++..+...++.            -.+-.+.+|++-++..++....+.. .....++|-+.++--+++.
T Consensus       337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~  416 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY  416 (1113)
T ss_pred             CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence                       111112111111            1223466788777755544433332 3345666766677778999


Q ss_pred             CCeEEEEEcCcceee
Q 024676          249 DMWVHVFDFHTGEQI  263 (264)
Q Consensus       249 d~~v~vwd~~~g~~i  263 (264)
                      ||...|||...|-++
T Consensus       417 dgst~iwdi~eg~pi  431 (1113)
T KOG0644|consen  417 DGSTIIWDIWEGIPI  431 (1113)
T ss_pred             CCceEeeecccCCcc
Confidence            999999998877654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.61  E-value=4.8e-14  Score=118.05  Aligned_cols=175  Identities=15%  Similarity=0.143  Sum_probs=126.5

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      ..|.+.|.+-+|+|   ||.-|++++.||.|+||+-. |-+..++.....+|+|++|.|++..++-+..++ +.|=.+..
T Consensus       101 ~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h-~~IKpL~~  175 (737)
T KOG1524|consen  101 SAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGGH-ISIKPLAA  175 (737)
T ss_pred             hhhhhhhhhcccCC---CCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCCe-EEEeeccc
Confidence            47999999999996   99999999999999999853 433344555667999999999987665544443 44444443


Q ss_pred             CcEEEE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           93 GDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        93 ~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      ...... ..|...|.++.|+|.+.++++|+.|-..++||.-. .. ......|.-++++++|.|+  ..++.++. .++|
T Consensus       176 n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~-Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R  250 (737)
T KOG1524|consen  176 NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-AN-LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTAR  250 (737)
T ss_pred             ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cc-cccCChhccceeeeeeccc--cceeeeee-eeee
Confidence            333333 35888999999999999999999999999999642 22 2223356778999999986  34444454 4555


Q ss_pred             EEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCC
Q 024676          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG  207 (264)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  207 (264)
                      +         .. ..-..|..++||+||.-++++..
T Consensus       251 ~---------~~-p~~GSifnlsWS~DGTQ~a~gt~  276 (737)
T KOG1524|consen  251 F---------SS-PRVGSIFNLSWSADGTQATCGTS  276 (737)
T ss_pred             e---------cC-CCccceEEEEEcCCCceeecccc
Confidence            2         11 12246888999999988887653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=4.6e-14  Score=114.80  Aligned_cols=192  Identities=19%  Similarity=0.257  Sum_probs=132.2

Q ss_pred             EEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE-EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc
Q 024676           65 WSCCLDANALFSASGSADFTAKLWDALTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN  143 (264)
Q Consensus        65 ~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~  143 (264)
                      ..++|++++..+++|+.||++|+|+..+...+. ..+|...|.++.|+|++++|++-+.| ..++|+.+++......-..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            668999999999999999999999977655433 44688899999999999999999999 8999999887432221111


Q ss_pred             CCCC-eEEEEEecCC--Ce--EEEEeeCCCeEEEEECCCCc---ee---EEecCCCCEEEEEEcCCCcEEEEeC-CCcEE
Q 024676          144 SSGS-IRTVAWLHSD--QT--ILSSCTDSGGVRLWDARSGK---IV---QTLETKSPVTSAEVSRDGRYITTAD-GSSVK  211 (264)
Q Consensus       144 ~~~~-i~~~~~~~~~--~~--~~~~~~~d~~v~iwd~~~~~---~~---~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~  211 (264)
                      .+.+ ...+.|..++  +.  +++.-..-+.|+.||+..-+   .+   +.+.....+.+++++++|+|++.+. ++.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            1222 2233344322  12  23333344567776654211   11   1223456799999999999997654 89999


Q ss_pred             EEECCCceeeeEEec-CCC-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          212 FWDANHFGLVKGYNM-PCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       212 iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      |++..+.+.++-.+. +.. .....|.| +.+++++-|.|....|.-+.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEe
Confidence            999988877765543 222 34566777 47778888888888877543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=8e-13  Score=114.35  Aligned_cols=213  Identities=17%  Similarity=0.126  Sum_probs=131.9

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  118 (264)
                      .+.++|. +|...+.+..+...+.+.+|+||++.++..+.+   ..|.+||+.+++..........+....|+|+++.|+
T Consensus       177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            4555665 354445566677889999999999988766543   469999999887654433444566789999998776


Q ss_pred             -EeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE--CCCCceeEEecCCCCEEEEEE
Q 024676          119 -TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--ARSGKIVQTLETKSPVTSAEV  195 (264)
Q Consensus       119 -s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd--~~~~~~~~~~~~~~~v~~~~~  195 (264)
                       +.+.++...+|.++........+..+.+......|+|++..++.++..++...||.  +.+++...............|
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~  335 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI  335 (427)
T ss_pred             EEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence             55677776666543221123333333444556789998887776655456666665  455554322222222345789


Q ss_pred             cCCCcEEEEe-CC-C--cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC---eEEEEEc
Q 024676          196 SRDGRYITTA-DG-S--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDF  257 (264)
Q Consensus       196 s~~~~~l~~~-~~-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~v~vwd~  257 (264)
                      +|||++++.. .. +  .|.+||+.+++.. .+..........+.|+ +++++..+.++   .+++.++
T Consensus       336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spd-g~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        336 SPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPN-GRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCC-CCEEEEEEecCCCEEEEEEEC
Confidence            9999987643 22 2  6899999876533 2322223345677775 66666555433   3444455

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=7.8e-13  Score=114.82  Aligned_cols=203  Identities=14%  Similarity=0.085  Sum_probs=137.8

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeC---CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCe-
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFT-   84 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~---d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~-   84 (264)
                      ..+..|..++...+|+|   ||+.|+..+.   +..+.+|++.+++.. .+..+.+.+...+|+||++.+ ++.+.++. 
T Consensus       195 ~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  270 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT  270 (435)
T ss_pred             EEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence            34456788899999996   9998888764   357899999888653 455566778889999999876 46666665 


Q ss_pred             -EEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           85 -AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        85 -v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                       |.+||+.++.......+........|+|+++.++..+. ++  .|.++|+.+++.  ..+....+......|+|++..+
T Consensus       271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~--~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP--RRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             eEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe--EEeecCCCcccCeEECCCCCEE
Confidence             66668888766554445555667899999998887664 33  577778765443  2332234455667899988877


Q ss_pred             EEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eC-C-----CcEEEEECCCce
Q 024676          161 LSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-G-----SSVKFWDANHFG  219 (264)
Q Consensus       161 ~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~-~-----~~i~iwd~~~~~  219 (264)
                      +.+....  ..|.+||+.++.. ..+.....+....|+|||++++. +. .     ..+.++|+....
T Consensus       349 a~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        349 AFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             EEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            6655433  3688889866543 33333334667889999988654 22 2     246777775543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=5.2e-13  Score=115.80  Aligned_cols=203  Identities=15%  Similarity=0.091  Sum_probs=133.4

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCC-
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF-   83 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~-   83 (264)
                      +..+..|..++...+|+|   ||+.|+..+.++   .+.+|++.+++.. .+..+.+...+.+|+||++.++ +.+.++ 
T Consensus       196 ~~~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~  271 (433)
T PRK04922        196 PQTILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGN  271 (433)
T ss_pred             ceEeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence            444556777888888885   999998887543   5888999887643 3333444556789999998764 556665 


Q ss_pred             -eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        84 -~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                       .|.+||+.+++......+........|+|+++.++.++. ++.  +.++++.+++.  ..+..........+|+|++..
T Consensus       272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g~~~~~~~~SpDG~~  349 (433)
T PRK04922        272 PEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERLTFQGNYNARASVSPDGKK  349 (433)
T ss_pred             ceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEeecCCCCccCEEECCCCCE
Confidence             588999988875544444444567899999998887664 444  55566655442  222222233445789998887


Q ss_pred             EEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-C-C--CcEEEEECCCc
Q 024676          160 ILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-G--SSVKFWDANHF  218 (264)
Q Consensus       160 ~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~--~~i~iwd~~~~  218 (264)
                      ++.+..+++  .|.+||+.+++.. .+..........|+|||++++.. . +  ..+.++++...
T Consensus       350 Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        350 IAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            766544333  6999999888754 33332234467899999876543 2 2  35777777543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=6.5e-13  Score=120.62  Aligned_cols=246  Identities=17%  Similarity=0.131  Sum_probs=163.8

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-----c--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----D--WIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-----~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      +-|+..|..++-++  +++.+++|||.||+|++|+...-     .  ...++..-...+.++.+-+.+..+|.++.||.|
T Consensus      1045 ~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            46777777766665  66789999999999999987542     1  123444456788889888899999999999999


Q ss_pred             EEEeCCCCcE-------EEEee--cCC-eEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeE-eccCCCCeEEEE
Q 024676           86 KLWDALTGDE-------KHSFE--HKH-IVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTVA  152 (264)
Q Consensus        86 ~iwd~~~~~~-------~~~~~--~~~-~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~  152 (264)
                      ++.++...+.       .+...  ... .|...++..  .+..++.+..-+.|-.||++.....+.. .....|.+++++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence            9998865211       11111  112 233333433  2235666777788999999876544432 233467899998


Q ss_pred             EecCCCeEEEEeeCCCeEEEEECCCCceeEEec--CCCCEEEEEEcCCC---cE-EEEeC--CCcEEEEECCCceeeeEE
Q 024676          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDG---RY-ITTAD--GSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       153 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~---~~-l~~~~--~~~i~iwd~~~~~~~~~~  224 (264)
                      ..+-+.+ ++.|...|.+-+||+|=+..+..+.  ...++..+..+|-.   .. ++++.  .+.+.+|++.++.+-..+
T Consensus      1203 idp~~~W-lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1203 IDPWCNW-LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             ecCCceE-EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            8776654 5555666999999999888877665  45677777776543   23 33333  368999999988665555


Q ss_pred             ecC-----------CC----Cc----eeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          225 NMP-----------CN----TE----SASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       225 ~~~-----------~~----~~----~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      -..           .+    +.    ..+-....+.++.+|+.|..||.||...-+
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            332           11    00    011112235689999999999999976543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1e-12  Score=100.22  Aligned_cols=231  Identities=16%  Similarity=0.144  Sum_probs=150.7

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC----CC---ce-EEeeeCCc-----CCEEEEEECCCCcEEEEe
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE----TG---DW-IGTFEGHK-----GAVWSCCLDANALFSASG   79 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~----~~---~~-~~~~~~H~-----~~V~~v~~~~~~~~l~s~   79 (264)
                      .+|..||+.++|.    | .+|++|+ ||.|+=|.=+    +.   ++ ....-.|.     -.|+++-..|...-+..+
T Consensus        59 qahdgpiy~~~f~----d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A  132 (325)
T KOG0649|consen   59 QAHDGPIYYLAFH----D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA  132 (325)
T ss_pred             cccCCCeeeeeee----h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence            7999999999998    3 3555554 5988877421    11   11 11112233     347888889877777777


Q ss_pred             cCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--------ccCCC-CeE
Q 024676           80 SADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--------GNSSG-SIR  149 (264)
Q Consensus        80 s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--------~~~~~-~i~  149 (264)
                      +.|+.+.-||+++|...++++ |++.+.++.--.....+++|+.||++|+||.++++.....-        .++.+ .|.
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig  212 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG  212 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence            789999999999999988886 89999998874444568899999999999998876432211        11112 234


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec-CC
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PC  228 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~-~~  228 (264)
                      +++-  +..++++++  .-.+.+|.+++-++...+....++..+.|-.+ ..++++.++.+.-|.+..--.. ..+. +.
T Consensus       213 ala~--~edWlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl~a-~ip~~s~  286 (325)
T KOG0649|consen  213 ALAV--NEDWLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNGVLQA-NIPVEST  286 (325)
T ss_pred             EEec--cCceEEecC--CCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeeccEEEE-eccCCcc
Confidence            4432  344555443  25799999999999888888888888888654 4556677788888876432111 1122 11


Q ss_pred             CCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676          229 NTESASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       229 ~~~~~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                      .+.+.++...-=+++..+|....+.++
T Consensus       287 ~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  287 ACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ceeeecccCCceEEEEecccceeeeee
Confidence            222222221112455567777777776

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.60  E-value=2.2e-13  Score=108.46  Aligned_cols=244  Identities=18%  Similarity=0.272  Sum_probs=165.9

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC---Cc--eEEeeeCCc------------CCEEEEEECCCCc--
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GD--WIGTFEGHK------------GAVWSCCLDANAL--   74 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~---~~--~~~~~~~H~------------~~V~~v~~~~~~~--   74 (264)
                      ...+.|.+|.|..   +|.+|+||..+|-|-++.-+.   ++  +..+|..|+            ..|..+.|-+++.  
T Consensus        23 teadiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   23 TEADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             chhcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence            4566788999994   899999999999998874332   22  334555554            4578888877653  


Q ss_pred             EEEEecCCCeEEEEeCCCCcEE-----------------------------------EEee--cCCeEEEEEECCCCCEE
Q 024676           75 FSASGSADFTAKLWDALTGDEK-----------------------------------HSFE--HKHIVRACAFSEDTHLL  117 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~~~~~~~-----------------------------------~~~~--~~~~v~~~~~~~~~~~l  117 (264)
                      .+.....|+++|+|.+......                                   +.+.  |...++++.++.+...+
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~  179 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF  179 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence            3445566999999987432110                                   1111  45568899999999888


Q ss_pred             EEeeCCCcEEEeeCCCCCCCCe--EeccCC-----CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-ee---EEec-
Q 024676          118 LTGGFEKILRIFDLNRPDAPPR--EVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IV---QTLE-  185 (264)
Q Consensus       118 ~s~~~d~~i~~~d~~~~~~~~~--~~~~~~-----~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~---~~~~-  185 (264)
                      +++ .|=.|.+|+++.......  .+.+++     -.|++..|.|....+++-++..|+|++-|+|... |-   ..++ 
T Consensus       180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            865 567799999875433222  222222     2355556666666777767777999999998432 11   0111 


Q ss_pred             ---C---------CCCEEEEEEcCCCcEEEEeCCCcEEEEEC-CCceeeeEEecCCCCc----------------eeeEc
Q 024676          186 ---T---------KSPVTSAEVSRDGRYITTADGSSVKFWDA-NHFGLVKGYNMPCNTE----------------SASLE  236 (264)
Q Consensus       186 ---~---------~~~v~~~~~s~~~~~l~~~~~~~i~iwd~-~~~~~~~~~~~~~~~~----------------~~~~~  236 (264)
                         .         -..|..+.|+++|+++++-+=-+|++||+ ...+++.++++++...                .+++.
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence               0         14678899999999998876679999999 5667788888764321                22344


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCccee
Q 024676          237 PKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      . .+.++.|||.....++|+...|.+
T Consensus       339 g-~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  339 G-NDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             C-CcceEecccccceEEEecCCCCcc
Confidence            3 367899999999999999777654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=4.3e-13  Score=108.35  Aligned_cols=244  Identities=16%  Similarity=0.176  Sum_probs=163.4

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe------eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT------FEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~------~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ...|..+.|. .-+....|+..+.|..+.+.+.........      ..+-+++|..++..  ...+++|-.+|.+++|.
T Consensus        55 ~~ris~l~~~-~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   55 LDRISSLLFG-VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhheee-cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence            3456666776 233445666666777777766655443322      23345566555433  34567778899999999


Q ss_pred             CCCCc----EEEEeecCCeEEEEEECCCCC-EEEEeeCC--CcEEEeeCCCCCCCCeEeccCC--------CCeEEEEEe
Q 024676           90 ALTGD----EKHSFEHKHIVRACAFSEDTH-LLLTGGFE--KILRIFDLNRPDAPPREVGNSS--------GSIRTVAWL  154 (264)
Q Consensus        90 ~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~~--------~~i~~~~~~  154 (264)
                      ...+.    .+..+.....+..+.-++..+ ++++|+..  +.+++||++..+..+......+        -.+..+.|.
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            87543    333444445566666677554 45558888  8899999986543322221111        124455666


Q ss_pred             cCC-CeEEEEeeCCCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeE-Eec-CC
Q 024676          155 HSD-QTILSSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG-YNM-PC  228 (264)
Q Consensus       155 ~~~-~~~~~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~-~~~-~~  228 (264)
                      +.. ...++++..-+++|+||.+.++ ++..+. ..+++.++...|.++++.+++ -+.+..+|++.+..... |+. ..
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG  291 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence            542 4568888888999999999764 666665 357899999999999987776 47899999999887654 433 33


Q ss_pred             CCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       229 ~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+.++..+| ...+++++|.|++|||+|.++.+.+
T Consensus       292 sirsih~hp-~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  292 SIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             CcceEEEcC-CCceEEeeccceeEEEeecccchhh
Confidence            455566666 5789999999999999999885543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=7.7e-14  Score=110.82  Aligned_cols=188  Identities=15%  Similarity=0.206  Sum_probs=133.1

Q ss_pred             cEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-CC-CCe
Q 024676           74 LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SS-GSI  148 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~-~~i  148 (264)
                      ..+|++-..++|++||..++..+..+. ++..++.+.|..  ....+.+|+.||+||+||++......+.... +. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            567888889999999999988777765 455566666655  5678999999999999999876554443322 22 244


Q ss_pred             EEEEEecCCCeEEEEee----CCCeEEEEECCCCce-eEEe--cCCCCEEEEEEcCCC-cEE-EEeCCCcEEEEECCCce
Q 024676          149 RTVAWLHSDQTILSSCT----DSGGVRLWDARSGKI-VQTL--ETKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFG  219 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~----~d~~v~iwd~~~~~~-~~~~--~~~~~v~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~  219 (264)
                      .+++.+- ...+++.+.    .+-.|.+||+|..+. +..+  .++..|+++.|+|+. .+| +++.||.+.++|++.-.
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            5555432 234555443    346799999999876 6555  356779999999976 444 45669999999997532


Q ss_pred             ----eeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          220 ----LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       220 ----~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                          +++.++....+-.+.|..+.-+.+.+-+..+...+|+++.|.+
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence                2455555555556677765434588888899999999987764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=6.2e-12  Score=99.30  Aligned_cols=172  Identities=13%  Similarity=0.229  Sum_probs=125.2

Q ss_pred             CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC-CcEEEEee---cCCeEEEEEECCCCCE
Q 024676           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDEKHSFE---HKHIVRACAFSEDTHL  116 (264)
Q Consensus        41 ~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~---~~~~v~~~~~~~~~~~  116 (264)
                      ..+.|||-.....+.++. -..+|.+|.+.++.--++.   .+.|.+|...+ .+.++.++   .++.+.+++-+.+..+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl---~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL---ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe---cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            468999977777777766 4578999999876543333   66899999874 34555554   2333333333333334


Q ss_pred             EEEee-CCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe-EEEEECCCCceeEEecC---CCCE
Q 024676          117 LLTGG-FEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIVQTLET---KSPV  190 (264)
Q Consensus       117 l~s~~-~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~-v~iwd~~~~~~~~~~~~---~~~v  190 (264)
                      |+--+ .-|.+.+-|+..... ....+..|...|.+++.+- ++.++++++..|+ |||||.++|+.+.++..   +..+
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i  229 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI  229 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence            44323 358899999976554 3466778999999999775 5678889888885 89999999999888853   4569


Q ss_pred             EEEEEcCCCcEEEEeCC-CcEEEEECCC
Q 024676          191 TSAEVSRDGRYITTADG-SSVKFWDANH  217 (264)
Q Consensus       191 ~~~~~s~~~~~l~~~~~-~~i~iwd~~~  217 (264)
                      .+++||||+.++++++| ++++|+.++.
T Consensus       230 y~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999987665 8999998864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.7e-12  Score=112.39  Aligned_cols=197  Identities=11%  Similarity=0.120  Sum_probs=129.5

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeC---CCCcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEE-ecCCC--
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSAS-GSADF--   83 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~---d~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s-~s~D~--   83 (264)
                      +..+..++...+|+|   ||+.|+..+.   +..+.+|++.+++..  ..+.+|   +...+|+||++.++. .+.++  
T Consensus       194 lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~  267 (429)
T PRK03629        194 VHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSL  267 (429)
T ss_pred             eecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence            345666788899996   9998886653   346788899888643  234444   446789999988764 34454  


Q ss_pred             eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC-CcEEEe--eCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-KILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~i~~~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      .|.+||+.++.......+...+....|+|+++.|+.++.+ +...+|  |+.+++.  ..+...........|+|++..+
T Consensus       268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        268 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             EEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeecCCCCccCEEECCCCCEE
Confidence            5888999888765555555567788999999988776654 444555  6654432  2332233344567889888877


Q ss_pred             EEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCC---cEEEEECCC
Q 024676          161 LSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGS---SVKFWDANH  217 (264)
Q Consensus       161 ~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~---~i~iwd~~~  217 (264)
                      +.+...+  ..|.+||+++++... +.......+..|+|||++++.+ .++   .+.++++..
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            6665443  358889999887543 3222233467899999887653 333   367777743

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=2.7e-11  Score=102.31  Aligned_cols=190  Identities=15%  Similarity=0.148  Sum_probs=132.3

Q ss_pred             EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECC
Q 024676           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE  112 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  112 (264)
                      ++++-..++++.+.|..+.+.++.+....+.-..+.|++|+++++.+++|+.|.++|+.+++.+.+++.......+++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            44666778999999999999999998654443447799999999888999999999999999999998888889999999


Q ss_pred             CCCEEEEee-CCCcEEEeeCCCCCCCCeEecc------CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCcee--EE
Q 024676          113 DTHLLLTGG-FEKILRIFDLNRPDAPPREVGN------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV--QT  183 (264)
Q Consensus       113 ~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~--~~  183 (264)
                      ++++++++. ..+.+.++|.++.+........      ....+..+..++....+++.-.+-++|-+.|....+.+  ..
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~  167 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT  167 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred             CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence            999999776 5799999998876543322111      12345566667776666666666688888898776543  34


Q ss_pred             ecCCCCEEEEEEcCCCcEEEE-eC-CCcEEEEECCCceeee
Q 024676          184 LETKSPVTSAEVSRDGRYITT-AD-GSSVKFWDANHFGLVK  222 (264)
Q Consensus       184 ~~~~~~v~~~~~s~~~~~l~~-~~-~~~i~iwd~~~~~~~~  222 (264)
                      +..........++|+++++.. .. ++.|-++|.++++.+.
T Consensus       168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence            455566788999999987644 33 4578888887765543

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=8.6e-13  Score=101.70  Aligned_cols=155  Identities=19%  Similarity=0.320  Sum_probs=105.7

Q ss_pred             eeEeccCCCCCeEEEEEeC---CC-------CcEEEeCCC-CceEEeeeC-CcCCEEEEEECCCCcEEE--EecCCCeEE
Q 024676           21 DLFYSPITPDGFFLVSASK---DS-------SPMLRNGET-GDWIGTFEG-HKGAVWSCCLDANALFSA--SGSADFTAK   86 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~---d~-------~v~i~~~~~-~~~~~~~~~-H~~~V~~v~~~~~~~~l~--s~s~D~~v~   86 (264)
                      .+.|+|   .|++|+.-..   |.       ...+|-++. +.....+.- ..++|..++|+|++..++  +|..+..|.
T Consensus        10 ~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen   10 KLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            578885   7766654433   22       233343321 223334433 346799999999998753  466788999


Q ss_pred             EEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC---CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           87 LWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        87 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      |||+. ++.+..+. ...++.+.|+|+|++|+.++.+   |.+.+||.++.+....  . .......++|+|++.+++++
T Consensus        87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~--~-~~~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST--F-EHSDATDVEWSPDGRYLATA  161 (194)
T ss_pred             EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec--c-ccCcEEEEEEcCCCCEEEEE
Confidence            99996 55556664 5678899999999999998754   5599999985443211  1 22346789999999988776


Q ss_pred             eeC-----CCeEEEEECCCCceeEEe
Q 024676          164 CTD-----SGGVRLWDARSGKIVQTL  184 (264)
Q Consensus       164 ~~~-----d~~v~iwd~~~~~~~~~~  184 (264)
                      .+.     |..++||+.. |+.+...
T Consensus       162 ~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EeccceeccccEEEEEec-CeEeEec
Confidence            553     7889999985 6555543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=2.1e-13  Score=105.06  Aligned_cols=116  Identities=18%  Similarity=0.256  Sum_probs=91.9

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEE--EEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---Ce
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLV--SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FT   84 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~--t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~   84 (264)
                      .+.....++|.+++|+|   +|+.++  .|..+..+.+||++ ++.+.++.  ...+..+.|+|+|++++.|+.+   |.
T Consensus        53 ~i~l~~~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~  126 (194)
T PF08662_consen   53 SIELKKEGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD  126 (194)
T ss_pred             eeeccCCCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence            33344566899999997   676654  45577899999996 66666664  4677889999999999887644   67


Q ss_pred             EEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC------CCcEEEeeCC
Q 024676           85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIFDLN  132 (264)
Q Consensus        85 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------d~~i~~~d~~  132 (264)
                      +.+||+.+.+.+...+|.. +..++|+|+|++++++..      |+.+++|+..
T Consensus       127 l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  127 LEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            9999999888888887765 678999999999998763      7888999874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.56  E-value=1.8e-12  Score=113.13  Aligned_cols=218  Identities=12%  Similarity=0.124  Sum_probs=152.3

Q ss_pred             CCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcE--E-----EEeecCCeEEEEEEC
Q 024676           41 SSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE--K-----HSFEHKHIVRACAFS  111 (264)
Q Consensus        41 ~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~--~-----~~~~~~~~v~~~~~~  111 (264)
                      +.+.+|+.... ..-..+. -..+|.+++|+|.. .+++.|..+|.|-+||+..+..  .     ..-.|..++..+.|-
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            45788988765 3333343 24689999999854 6789999999999999987653  1     222477889999996


Q ss_pred             CCCC--EEEEeeCCCcEEEeeCCCCCCCCeEe-----------ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE---C
Q 024676          112 EDTH--LLLTGGFEKILRIFDLNRPDAPPREV-----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD---A  175 (264)
Q Consensus       112 ~~~~--~l~s~~~d~~i~~~d~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd---~  175 (264)
                      .+..  -+++++.||.|..|+++.-..+....           ......+.++.|.+.+...++.|+++|.|.-=+   .
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            6544  49999999999999876432211110           011234677888888888888999999988833   3


Q ss_pred             CCCc-e----e-EEecCCCCEEEEEEcCCC-cEEEEeCCCcEEEEECC-CceeeeEEecCCC-CceeeEcCCCCCEEEEe
Q 024676          176 RSGK-I----V-QTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN-HFGLVKGYNMPCN-TESASLEPKLGNIFIAG  246 (264)
Q Consensus       176 ~~~~-~----~-~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  246 (264)
                      +.+. .    + ....+..+|..+.++|=+ ++++++.|-+++||... ...++-.+.-+.. ....+|+|--...|+++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence            3332 1    1 112345789999999865 45555558899999987 5555555544433 45677887666799999


Q ss_pred             cCCCeEEEEEcCc
Q 024676          247 GEDMWVHVFDFHT  259 (264)
Q Consensus       247 s~d~~v~vwd~~~  259 (264)
                      ..||.+.+||+..
T Consensus       461 d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQ  473 (555)
T ss_pred             cCCCceehhhhhc
Confidence            9999999999864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.4e-12  Score=104.77  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=118.5

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee---CCcCCEEEEEECCCCcEEEE-ecC-CCeEEEEeC
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSAS-GSA-DFTAKLWDA   90 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~---~H~~~V~~v~~~~~~~~l~s-~s~-D~~v~iwd~   90 (264)
                      ..+|.+|+++     .+.|+.+-.+. |.|||+.+.+++.++.   .|...+.++++++.+.+++- ++. -|.|.+||+
T Consensus        87 pt~IL~VrmN-----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~  160 (391)
T KOG2110|consen   87 PTSILAVRMN-----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT  160 (391)
T ss_pred             CCceEEEEEc-----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence            4467777775     34555655544 9999999999888775   35556767777777778764 333 489999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCc-EEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKI-LRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~-i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      .+-.+...+. |+.++-+++|+++|.+|+|+|..|+ ||++.+.+++...+.. +.-...|.+++|.++.+. +++.++.
T Consensus       161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~T  239 (391)
T KOG2110|consen  161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNT  239 (391)
T ss_pred             ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe-EEEecCC
Confidence            9887777664 9999999999999999999999877 8999998887665543 334557888998887765 4445566


Q ss_pred             CeEEEEECCCCc
Q 024676          168 GGVRLWDARSGK  179 (264)
Q Consensus       168 ~~v~iwd~~~~~  179 (264)
                      ++|.||-+++..
T Consensus       240 eTVHiFKL~~~~  251 (391)
T KOG2110|consen  240 ETVHIFKLEKVS  251 (391)
T ss_pred             CeEEEEEecccc
Confidence            899999987654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.55  E-value=2.2e-13  Score=116.29  Aligned_cols=205  Identities=22%  Similarity=0.239  Sum_probs=144.1

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--E---EeeeCCcC-CEEEEEECCCCcEEEEecCCCe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--I---GTFEGHKG-AVWSCCLDANALFSASGSADFT   84 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~---~~~~~H~~-~V~~v~~~~~~~~l~s~s~D~~   84 (264)
                      ++++|.+-|..+.|+|.. | .+|||||.|..|+||.+..|--  +   ...-||++ .|.++.|+|...-+...+..++
T Consensus        74 ~l~~H~d~VtDl~FspF~-D-~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~  151 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFA-D-ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS  151 (1012)
T ss_pred             eeecccceeeccCccccc-h-hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence            568999999999999863 3 4789999999999998875421  1   11234544 6788999987655444455789


Q ss_pred             EEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-CeEEEEEecCCCeEEE
Q 024676           85 AKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQTILS  162 (264)
Q Consensus        85 v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~  162 (264)
                      ++|||+.+++.+..+ .|.+.|.+..|+.+|++|++.+.|+.|++||-+..-...+....|.+ .-.-+.|.-.-..++.
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlis  231 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIS  231 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhh
Confidence            999999998877665 48889999999999999999999999999998754333332233332 2233566644445676


Q ss_pred             EeeCC---CeEEEEECCCC-ceeEEecC--CCCEEEEEEcCCCcEEE-Ee-CCCcEEEEECCC
Q 024676          163 SCTDS---GGVRLWDARSG-KIVQTLET--KSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANH  217 (264)
Q Consensus       163 ~~~~d---~~v~iwd~~~~-~~~~~~~~--~~~v~~~~~s~~~~~l~-~~-~~~~i~iwd~~~  217 (264)
                      +|.+.   +.|++||.+.. ..+++++.  ...+.---+.||.+++. ++ .++.+..+.+..
T Consensus       232 TGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d  294 (1012)
T KOG1445|consen  232 TGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD  294 (1012)
T ss_pred             cccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence            66532   57999999874 34555543  34455556888876543 33 346777777654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.1e-12  Score=109.97  Aligned_cols=197  Identities=16%  Similarity=0.148  Sum_probs=126.1

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCCeEEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFTAKL   87 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~~v~i   87 (264)
                      +..+..++...+|+|   ||+.|+..+.+.   .+.+||+.+++... +....+.+.+.+|+||+..++ +.+.++..+|
T Consensus       191 l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        191 ALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             eccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence            346777888899996   999988877543   48889998887532 333334566789999998775 6788888777


Q ss_pred             EeC--CCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CCcEEEeeC--CCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           88 WDA--LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDL--NRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        88 wd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      |.+  .++.......+........|+|+++.++..+. ++...+|.+  .++.  ..............+|+|++..++.
T Consensus       267 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~  344 (427)
T PRK02889        267 YTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTFTGSYNTSPRISPDGKLLAY  344 (427)
T ss_pred             EEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEecCCCCcCceEECCCCCEEEE
Confidence            754  44443322233334556789999998876654 456666654  3332  2222212223345678888887665


Q ss_pred             EeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC--CC--cEEEEEC
Q 024676          163 SCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDA  215 (264)
Q Consensus       163 ~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~i~iwd~  215 (264)
                      +....+  .|.+||+.+++... +..........|+|||++|+...  ++  .+.+.++
T Consensus       345 ~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        345 ISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             EEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            544433  69999999887543 32223345678999998875432  22  3555555

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=3.3e-13  Score=113.86  Aligned_cols=193  Identities=20%  Similarity=0.281  Sum_probs=144.6

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  100 (264)
                      .+.|+-.+.  .+++.|+ -..|.-.++++|.++..|+-..+.+++|..++-..++++|..||.|.+||........++.
T Consensus       138 Dm~y~~~sc--Dly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  138 DMKYHKPSC--DLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             cccccCCCc--cEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence            466665333  3443333 3457778999999999999888999999999999999999999999999987765444443


Q ss_pred             -------cC-----CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe-EEEEeeCC
Q 024676          101 -------HK-----HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT-ILSSCTDS  167 (264)
Q Consensus       101 -------~~-----~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~d  167 (264)
                             |.     -.|+++.|..++-.++.|+.+|.+.+||+++.+........-.-++..+.|.+.++. .+++ .+.
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk  293 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDK  293 (703)
T ss_pred             cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cch
Confidence                   11     138999999999999999999999999999876543332223457888888765433 4544 455


Q ss_pred             CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCC
Q 024676          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH  217 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~  217 (264)
                      ..++|||-.+|+....++....++.+++-|++-++.. -++..+..|=+..
T Consensus       294 ~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  294 RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             HHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            8999999999999998888888999999998755544 4455565554443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2.8e-11  Score=97.28  Aligned_cols=242  Identities=16%  Similarity=0.169  Sum_probs=158.4

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC-CC---ce----------EEeeeCCcCCEEEEEECCCCc
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TG---DW----------IGTFEGHKGAVWSCCLDANAL   74 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~-~~---~~----------~~~~~~H~~~V~~v~~~~~~~   74 (264)
                      +++.+--..-|.+++|.|.+.  ..|+.|.+.|.+ +|... ++   ..          +..-.|| .+|.+++|.+|+.
T Consensus       133 t~Lks~sQrnvtclawRPlsa--selavgCr~gIc-iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt  208 (445)
T KOG2139|consen  133 TKLKSVSQRNVTCLAWRPLSA--SELAVGCRAGIC-IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT  208 (445)
T ss_pred             ceecchhhcceeEEEeccCCc--ceeeeeecceeE-EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC
Confidence            333345667899999999754  578888888765 66543 21   11          1122456 6899999999999


Q ss_pred             EEEEecC-CCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEE
Q 024676           75 FSASGSA-DFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (264)
Q Consensus        75 ~l~s~s~-D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~  152 (264)
                      .++++|- |..++|||..++..+... .-...+..+.|+|++.+++++.-|+..++|+........... -..+.+...+
T Consensus       209 ~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtac  287 (445)
T KOG2139|consen  209 ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTAC  287 (445)
T ss_pred             EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeee
Confidence            9988765 468999999988655544 234568889999999999999999999999754332221222 2345888899


Q ss_pred             EecCCCeEEEEeeCCCeEEEEECCC----C--------ceeE---Eec------C----CCCEEEEEEcCCCcEEEEeC-
Q 024676          153 WLHSDQTILSSCTDSGGVRLWDARS----G--------KIVQ---TLE------T----KSPVTSAEVSRDGRYITTAD-  206 (264)
Q Consensus       153 ~~~~~~~~~~~~~~d~~v~iwd~~~----~--------~~~~---~~~------~----~~~v~~~~~s~~~~~l~~~~-  206 (264)
                      |+|.+..++.+++.  .-++|.+.-    .        +.+.   .++      .    ..++.+++|.|.|.+++..- 
T Consensus       288 WspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  288 WSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             ecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            99999998888764  455665421    0        0110   010      0    24688999999999987642 


Q ss_pred             --C------CcEEEEECCCceeeeEE----ecCCCCceeeEc--CCCCCEEEEecCCCeEEEEEc
Q 024676          207 --G------SSVKFWDANHFGLVKGY----NMPCNTESASLE--PKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       207 --~------~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~gs~d~~v~vwd~  257 (264)
                        +      ..|.+||.++.-.+.-.    .....+.-++|.  .+.+.+|..+=.-|.+.-|++
T Consensus       366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence              1      23677888765433222    112334444443  345677776666666666654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.51  E-value=3.7e-11  Score=103.86  Aligned_cols=212  Identities=17%  Similarity=0.136  Sum_probs=134.1

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  118 (264)
                      .+.++|.... ..+.+..+...+...+|+||+++++.++.+   ..|.+||+.++.......+...+....|+|+++.|+
T Consensus       171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            4566676533 344555677788999999999998766543   489999999886555444555667789999998776


Q ss_pred             E-eeCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEE
Q 024676          119 T-GGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA  193 (264)
Q Consensus       119 s-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~  193 (264)
                      . .+.++  .|.+||+.++..  ..+..+........|++++..++.+....+  .|.++|+.+++..............
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~  327 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQL--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP  327 (417)
T ss_pred             EEECCCCCccEEEEECCCCCE--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence            4 44443  588888876532  223233333445678887777766554433  5788888887754333334456678


Q ss_pred             EEcCCCcEEEEe-CCC---cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC---eEEEEEcC
Q 024676          194 EVSRDGRYITTA-DGS---SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFH  258 (264)
Q Consensus       194 ~~s~~~~~l~~~-~~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~v~vwd~~  258 (264)
                      .++|+|++++.. .+.   .|.+||+.+... +.+..........+.++ +.+|+..+.++   .+++.+.+
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spd-g~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPN-GRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCC-CCEEEEEEeCCCcEEEEEEECC
Confidence            899999877653 332   688899877543 22222222334467774 66666655543   45555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.50  E-value=2.6e-12  Score=101.52  Aligned_cols=169  Identities=17%  Similarity=0.159  Sum_probs=129.3

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC-CCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~-~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      +...++.-|...|++|.|+|.+   +.|++++.|+...+|.. ..+++..+  +..|..++.+|.|+|.+..+|+||.-+
T Consensus        46 ~~~htls~Hd~~vtgvdWap~s---nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar  122 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAPKS---NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR  122 (361)
T ss_pred             eeceehhhhCcceeEEeecCCC---CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc
Confidence            4455667899999999999844   58999999999999998 66666554  456888999999999999999999999


Q ss_pred             eEEEEeCCCCcEEE-----EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC-----CCCC--------CC----CeEe
Q 024676           84 TAKLWDALTGDEKH-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL-----NRPD--------AP----PREV  141 (264)
Q Consensus        84 ~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~-----~~~~--------~~----~~~~  141 (264)
                      .|-+|=.+..+...     ..++...|.++.|+|++-+|++|+.|+++|++..     +...        .+    ..+.
T Consensus       123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~  202 (361)
T KOG1523|consen  123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA  202 (361)
T ss_pred             EEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence            99999877665432     2345667999999999999999999999999863     1110        00    1112


Q ss_pred             ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc
Q 024676          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK  179 (264)
Q Consensus       142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~  179 (264)
                      ....+.+..+.|++++..+.-. +.|..+.+-|.....
T Consensus       203 ~~~ggwvh~v~fs~sG~~lawv-~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  203 SSSGGWVHGVLFSPSGNRLAWV-GHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccCCCceeeeEeCCCCCEeeEe-cCCCceEEeecCCCc
Confidence            2345778999998877665544 556899999987664

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.3e-11  Score=100.24  Aligned_cols=248  Identities=14%  Similarity=0.150  Sum_probs=164.7

Q ss_pred             ceeecceEeecc--CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEe
Q 024676            4 RKVAVPLVCHGH--SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASG   79 (264)
Q Consensus         4 ~~~~~~~~~~~h--~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~   79 (264)
                      ++.++|+.+.+|  ..-|-+|+|+-   ..++|.+|..+++|+.-|+++.+.+..+.  ..++.|+.+..+|....+++.
T Consensus        91 ~k~~KPI~~~~~~H~SNIF~L~F~~---~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~  167 (609)
T KOG4227|consen   91 RKTPKPIGVMEHPHRSNIFSLEFDL---ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV  167 (609)
T ss_pred             hcCCCCceeccCccccceEEEEEcc---CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEE
Confidence            567889888764  45788999984   66899999999999999999988765553  245699999999999899999


Q ss_pred             cCCCeEEEEeCCCCc-EEE---EeecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCCeEeccC---CC---Ce
Q 024676           80 SADFTAKLWDALTGD-EKH---SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNS---SG---SI  148 (264)
Q Consensus        80 s~D~~v~iwd~~~~~-~~~---~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~---~~---~i  148 (264)
                      ++++.|.+||..... ...   .....+....+.|+|. ..+|++.+..+-+.+||++.+.....+.+..   ..   ..
T Consensus       168 t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~  247 (609)
T KOG4227|consen  168 TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW  247 (609)
T ss_pred             ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence            999999999987654 222   2223456778899995 5667777888889999998765433222221   11   22


Q ss_pred             EEEEEecCCCeEEEEeeCCCeEEEEECCCCce-eEEecCC-------CCEEEEEEcCCCcEEEEeCCCcEEEEECCC---
Q 024676          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLETK-------SPVTSAEVSRDGRYITTADGSSVKFWDANH---  217 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~-------~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~---  217 (264)
                      -.+.|+|++..+++- -....--+||+-+.++ +..+.++       ..+.+++|..|...++++++=.|++|.+..   
T Consensus       248 M~~~~~~~G~Q~msi-RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~d  326 (609)
T KOG4227|consen  248 MGSLWSPSGNQFMSI-RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAND  326 (609)
T ss_pred             hheeeCCCCCeehhh-hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcc
Confidence            446677766655543 3323455678877554 3333322       235566676665544445556899998842   


Q ss_pred             -ce--ee--------------eEE---ecC-CCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          218 -FG--LV--------------KGY---NMP-CNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       218 -~~--~~--------------~~~---~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                       +.  .+              +.+   ..+ .-+....|.+ -..++++.|....+++|.
T Consensus       327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             ccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhheeccc
Confidence             11  01              111   111 1223445555 367888899999999995

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.49  E-value=4.6e-13  Score=103.15  Aligned_cols=160  Identities=17%  Similarity=0.211  Sum_probs=119.1

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE----------EeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----------GTFEGHKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~----------~~~~~H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      +-.+.+.+..+...-..--+|++|..+|.+.+||+.++..+          .....|+++|.++.+.+.-..=++|+.+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            45566777764432122346788899999999999987432          33456999999999987666668888888


Q ss_pred             eEEEEeCCCC--cEEE--EeecC-CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           84 TAKLWDALTG--DEKH--SFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        84 ~v~iwd~~~~--~~~~--~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      .+-+|.+.-.  ....  ....+ -.|..+..-|++++++|+++|+-||+|..++....... .-|.+.+.+++|+|+ .
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-kyHsagvn~vAfspd-~  305 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-KYHSAGVNAVAFSPD-C  305 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh-hhhhcceeEEEeCCC-C
Confidence            8999987543  2111  11222 24788899999999999999999999999887654433 346689999999875 5


Q ss_pred             eEEEEeeCCCeEEEEEC
Q 024676          159 TILSSCTDSGGVRLWDA  175 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~  175 (264)
                      .+++.++.|++|.+|++
T Consensus       306 ~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  306 ELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhccCCceEEeeec
Confidence            57888899999999987

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=6.1e-11  Score=100.44  Aligned_cols=235  Identities=14%  Similarity=0.178  Sum_probs=158.8

Q ss_pred             ccCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCCcC------------------------------
Q 024676           14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKG------------------------------   62 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H~~------------------------------   62 (264)
                      +|...-+.|..+|   ||+|| |+|.+--.|++||+....+.  |+.|.+                              
T Consensus        49 e~p~ast~ik~s~---DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSP---DGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CCccccceeEecC---CCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            5666666777774   99876 66667778999988654321  221211                              


Q ss_pred             -------CE----EEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecC-CeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676           63 -------AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFD  130 (264)
Q Consensus        63 -------~V----~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~~~d  130 (264)
                             .|    +.++++.-..-|..++....|.-.++++|.-+..++.. .+++.|..++...+|++|+.++.+-.||
T Consensus       124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence                   11    11222211211222222334666677777766666644 6799999999999999999999999999


Q ss_pred             CCCCCCCCeEe-----ccC-----CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC--CCCEEEEEEcCC
Q 024676          131 LNRPDAPPREV-----GNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRD  198 (264)
Q Consensus       131 ~~~~~~~~~~~-----~~~-----~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~  198 (264)
                      .+..+.....-     ..+     ...++++.|..+ +..++.|...|.|.|||+|+.+++..-.+  .-||..+.|-+.
T Consensus       204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             chhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence            87544322111     111     224888888754 56677788889999999999998765444  457889999766


Q ss_pred             --CcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676          199 --GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       199 --~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                        +.-+++.+...++|||-.+++........+...-+++.|. +-+|.+|-++..+..|
T Consensus       283 ~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~-sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  283 DQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPG-SGMFFTANESSKMHTY  340 (703)
T ss_pred             CCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecC-CceEEEecCCCcceeE
Confidence              3567777778999999999887766666666677788874 6688888888777665

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=1.5e-12  Score=116.56  Aligned_cols=146  Identities=20%  Similarity=0.301  Sum_probs=118.1

Q ss_pred             CCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE--EeecCCeE
Q 024676           28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIV  105 (264)
Q Consensus        28 ~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~v  105 (264)
                      +++..++++|+.-+.+++|...-...--.+.||++.+.++.++.|+.+++|.|.|.++|+|++.+++...  .+.|...|
T Consensus       142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv  221 (967)
T KOG0974|consen  142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV  221 (967)
T ss_pred             cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence            3567899999999999999886222111588999999999999999999999999999999999987554  56799999


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676          106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (264)
Q Consensus       106 ~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~  177 (264)
                      ..+++.|+  .+++++.|.+.++|+.+..+.. ....+....++.++. +.+..+.+++.+|+.+++||+..
T Consensus       222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~-~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAV-PIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEE-cCCceEEEeeccCcchhhhhhhc
Confidence            99999999  8999999999999977644332 222334556787775 45677888889999999999754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=2e-12  Score=107.19  Aligned_cols=242  Identities=17%  Similarity=0.246  Sum_probs=167.8

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC-CCCce--EEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDW--IGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLW   88 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~-~~~~~--~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~iw   88 (264)
                      .||..-|-+-+|.|.+. -+.+++++.||++++-.+ .++.+  ...+..|+++|+.++..|+..+ |.|++.|+.++-.
T Consensus       182 SGH~~NvfQaKFiP~s~-d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~  260 (559)
T KOG1334|consen  182 SGHCNNVFQAKFIPFSG-DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI  260 (559)
T ss_pred             cccccchhhhhccCCCC-CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeee
Confidence            48999999999999874 467899999999999654 33332  3445669999999999998754 7899999999999


Q ss_pred             eCCCCcEEEEe---e-cCC---eEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCC-----------CeEeccCCCCeE
Q 024676           89 DALTGDEKHSF---E-HKH---IVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAP-----------PREVGNSSGSIR  149 (264)
Q Consensus        89 d~~~~~~~~~~---~-~~~---~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~-----------~~~~~~~~~~i~  149 (264)
                      |+.++.+...+   + +..   ....++.+|-. ..+++++.|...++||.+.-...           ..........|+
T Consensus       261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT  340 (559)
T KOG1334|consen  261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT  340 (559)
T ss_pred             eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence            98877543322   2 222   35678889954 47888999999999998643211           111112234689


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEECCC--C----------ceeEE-ecCCC---CEEEE-EEcCCCcEEEEeCC-CcEE
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWDARS--G----------KIVQT-LETKS---PVTSA-EVSRDGRYITTADG-SSVK  211 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~--~----------~~~~~-~~~~~---~v~~~-~~s~~~~~l~~~~~-~~i~  211 (264)
                      +++|++++.-++++-. |..|.++...-  |          ..+.. ++++.   -|-.+ .|-|...|+++++| |.|-
T Consensus       341 gl~Ysh~~sElLaSYn-De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF  419 (559)
T KOG1334|consen  341 GLVYSHDGSELLASYN-DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF  419 (559)
T ss_pred             eEEecCCccceeeeec-ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence            9999987776776654 47899984322  2          11111 33321   13333 46788899999888 8999


Q ss_pred             EEECCCceeeeEEecCCCC-ceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          212 FWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       212 iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      ||+..+.++++-....... +++-.+| .--+|++.|-|.-|+||-.
T Consensus       420 iW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  420 IWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             EEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecC
Confidence            9999988877655443332 2333344 4568999999999999965

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.42  E-value=1.3e-12  Score=109.63  Aligned_cols=92  Identities=21%  Similarity=0.364  Sum_probs=83.8

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      +|+..+|+|   ||++||+.|.||.+||++..+.+++..++..-+...||+|+||++++++|+.|-.|.||.+..++.++
T Consensus       292 ~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  292 SINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             cccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence            889999996   99999999999999999999888887777777889999999999999999999999999999887766


Q ss_pred             Ee-ecCCeEEEEEECC
Q 024676           98 SF-EHKHIVRACAFSE  112 (264)
Q Consensus        98 ~~-~~~~~v~~~~~~~  112 (264)
                      .- .|+.-|..|+|+|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            64 3888999999997

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.42  E-value=5.3e-11  Score=94.69  Aligned_cols=234  Identities=15%  Similarity=0.172  Sum_probs=149.5

Q ss_pred             eeeeEeccCCCCCeE-EEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEEEEeCCCCcEE
Q 024676           19 VVDLFYSPITPDGFF-LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        19 v~~~~~~~~~~~g~~-l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      |.-|.|..   |..+ |...+.|+.|++|++.+.++...+..-.+++.+++|+|||+. +.+..-|-.+.+|.+.+....
T Consensus        51 i~yieW~a---ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   51 IVYIEWKA---DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             hhheeeec---cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            45577774   4444 455678889999999999998888877788999999999965 578889999999999887654


Q ss_pred             EEeecCCeEEEEEECCCCCEEEEeeCCCcEE--------Ee------eCCCCCCCCe--------------------Eec
Q 024676           97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILR--------IF------DLNRPDAPPR--------------------EVG  142 (264)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~--------~~------d~~~~~~~~~--------------------~~~  142 (264)
                      ...-.+..+..++|+|++++.+.++...+.-        -|      ++++....-.                    ...
T Consensus       128 ~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY  207 (447)
T KOG4497|consen  128 LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY  207 (447)
T ss_pred             EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence            4333344567888888888877665432211        11      1111100000                    011


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--------------------------------e---------
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--------------------------------V---------  181 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--------------------------------~---------  181 (264)
                      ...-.+..+.|+|.++ +++.|+.|+.+||.+--+-+.                                +         
T Consensus       208 e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  208 ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            1112356678888665 566778889988853211000                                0         


Q ss_pred             -------------------EEec-------CCCCEEEEEEcCCCcEEEEeCC---CcEEEEECCCceeeeEEecCCCCce
Q 024676          182 -------------------QTLE-------TKSPVTSAEVSRDGRYITTADG---SSVKFWDANHFGLVKGYNMPCNTES  232 (264)
Q Consensus       182 -------------------~~~~-------~~~~v~~~~~s~~~~~l~~~~~---~~i~iwd~~~~~~~~~~~~~~~~~~  232 (264)
                                         +.++       ....+..++|++|..|+++-+|   +.+.+||+++.+....+.-..+...
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pira  366 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRA  366 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeE
Confidence                               0000       0013566899999999998776   4689999998765333322445566


Q ss_pred             eeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          233 ASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      +.+.|...+++++-|. ..+++|-.
T Consensus       367 f~WdP~~prL~vctg~-srLY~W~p  390 (447)
T KOG4497|consen  367 FEWDPGRPRLVVCTGK-SRLYFWAP  390 (447)
T ss_pred             EEeCCCCceEEEEcCC-ceEEEEcC
Confidence            7788866666665444 44888864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.42  E-value=5.8e-10  Score=88.32  Aligned_cols=229  Identities=13%  Similarity=0.197  Sum_probs=145.6

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCC------CeEEEEeCCC
Q 024676           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSAD------FTAKLWDALT   92 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D------~~v~iwd~~~   92 (264)
                      ..+.|+.   |..-++.|. |.-.+||+.+..+....-.-+.+...-+..--...++ ..|+.+      ..|.|||=..
T Consensus         9 lsvs~NQ---D~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    9 LSVSFNQ---DHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eEEEEcc---CCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence            3478884   544455554 4456899876533211111111111111111122222 233333      5899999777


Q ss_pred             CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe---ccCCCCeEEEEEecCCCe-EEE-EeeCC
Q 024676           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQT-ILS-SCTDS  167 (264)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~-~~~-~~~~d  167 (264)
                      ..++.++....+|..+.+.++.  ++. -..+.|++|.....-.....+   .+.+| +  ++..|.... +++ -+-.-
T Consensus        85 ~~~i~el~f~~~I~~V~l~r~r--iVv-vl~~~I~VytF~~n~k~l~~~et~~NPkG-l--C~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRRDR--IVV-VLENKIYVYTFPDNPKLLHVIETRSNPKG-L--CSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             CcEEEEEEeccceeeEEEcCCe--EEE-EecCeEEEEEcCCChhheeeeecccCCCc-e--EeecCCCCceEEEcCCCcc
Confidence            7888889999999999998774  333 356889999876322222222   22333 2  333443333 232 23345


Q ss_pred             CeEEEEECCCCce---eEEecCCCCEEEEEEcCCCcEEEEeC-CC-cEEEEECCCceeeeEEecC---CCCceeeEcCCC
Q 024676          168 GGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITTAD-GS-SVKFWDANHFGLVKGYNMP---CNTESASLEPKL  239 (264)
Q Consensus       168 ~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~-~~-~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~  239 (264)
                      |.|+|-|+...+.   .....+.+.|.+++++.+|.++++++ .| -|||||.++++.+..+.-.   ....+++|+|+ 
T Consensus       159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~-  237 (346)
T KOG2111|consen  159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN-  237 (346)
T ss_pred             ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC-
Confidence            8999999987665   33345678899999999999988765 44 5899999999999888653   34556788884 


Q ss_pred             CCEEEEecCCCeEEEEEcCc
Q 024676          240 GNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       240 ~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ..+|+++|.-|++++|.+..
T Consensus       238 ~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  238 SSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ccEEEEEcCCCeEEEEEeec
Confidence            89999999999999997653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.41  E-value=2.6e-12  Score=107.77  Aligned_cols=136  Identities=17%  Similarity=0.209  Sum_probs=100.7

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--------------Cce--EEeeeCC------------cCCEEEEE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------------GDW--IGTFEGH------------KGAVWSCC   68 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--------------~~~--~~~~~~H------------~~~V~~v~   68 (264)
                      ..|.+|+|-|..+  ..++.+-.+|...++|.+-              +..  +.+-..|            ++.|+..+
T Consensus       220 tsvT~ikWvpg~~--~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  220 SSVTCIKWVPGSD--SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             cceEEEEEEeCCC--ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            5789999999643  3556778889888885421              111  1111111            34678899


Q ss_pred             ECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCC
Q 024676           69 LDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS  147 (264)
Q Consensus        69 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~  147 (264)
                      |++|+++||+.|+||.+||+|..+.+.+...+ --....+|+|+|+++++++|+.|.-+.+|.+...+....-. .|+..
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-GHkSW  376 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-GHKSW  376 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-ccccc
Confidence            99999999999999999999988765443332 23468899999999999999999999999997665544433 57889


Q ss_pred             eEEEEEec
Q 024676          148 IRTVAWLH  155 (264)
Q Consensus       148 i~~~~~~~  155 (264)
                      |..++|-|
T Consensus       377 Vs~VaFDp  384 (636)
T KOG2394|consen  377 VSVVAFDP  384 (636)
T ss_pred             eeeEeecc
Confidence            99998854

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=4e-10  Score=97.90  Aligned_cols=201  Identities=16%  Similarity=0.101  Sum_probs=126.2

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCC--
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF--   83 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~--   83 (264)
                      .....+..++....|+|   ||++|+..+.+.   .+.+|++.+++... +....+.+...+|+||+++++ +.+.++  
T Consensus       192 ~~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~  267 (430)
T PRK00178        192 VTLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNP  267 (430)
T ss_pred             eEEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence            34445677788888886   999888776542   47778998886432 322334455688999998775 555555  


Q ss_pred             eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      .+.+||+.++.......+........|+|+++.++..+. ++  .|.++++.+++..  .+...........|+|++..+
T Consensus       268 ~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~lt~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        268 EIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RVTFVGNYNARPRLSADGKTL  345 (430)
T ss_pred             eEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCCCCccceEECCCCCEE
Confidence            577789988765544344444556789999988776554 33  4666777655432  221112223446788888877


Q ss_pred             EEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC--CC--cEEEEECCC
Q 024676          161 LSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANH  217 (264)
Q Consensus       161 ~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~i~iwd~~~  217 (264)
                      +.+...++  .|.+||+.+++... +..........|+|||++++.+.  ++  .+.++++..
T Consensus       346 ~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        346 VMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            66654443  58889999886533 22221223458999998875432  22  466667643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.40  E-value=2.5e-10  Score=98.73  Aligned_cols=188  Identities=17%  Similarity=0.133  Sum_probs=122.8

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCC--
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF--   83 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~--   83 (264)
                      ..+..+...+...+|+|   ||++|+.++.++   .+.+|++.+++.. .+..+.+.+.+++|+||++.++ +.+.++  
T Consensus       183 ~~l~~~~~~~~~p~~Sp---dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~  258 (417)
T TIGR02800       183 QTITRSREPILSPAWSP---DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNP  258 (417)
T ss_pred             EEeecCCCceecccCCC---CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence            34445666677777875   999998877543   6888999888643 3334556677789999998664 555554  


Q ss_pred             eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC-C--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-K--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      .+.+||+.++.......+........|+|+++.|+.++.. +  .|.++|+.+++.  ..+...........|+|++..+
T Consensus       259 ~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~i  336 (417)
T TIGR02800       259 DIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV--RRLTFRGGYNASPSWSPDGDLI  336 (417)
T ss_pred             cEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccCeEECCCCCEE
Confidence            5888898887654444444444566899999988766543 3  467777765442  2232234455667888887776


Q ss_pred             EEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE
Q 024676          161 LSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT  204 (264)
Q Consensus       161 ~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  204 (264)
                      +.+..+.+  .|.+||+.++.... +..........|+|||++|+.
T Consensus       337 ~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~  381 (417)
T TIGR02800       337 AFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILY  381 (417)
T ss_pred             EEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEE
Confidence            66554322  78899998865432 222223345689999987654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=2.9e-09  Score=88.55  Aligned_cols=233  Identities=15%  Similarity=0.101  Sum_probs=143.6

Q ss_pred             CCCCeEEEEEeC----------CCCcEEEeCCCCceEEeeeCCc-------CCEEEEEECCCCcEEEEec--CCCeEEEE
Q 024676           28 TPDGFFLVSASK----------DSSPMLRNGETGDWIGTFEGHK-------GAVWSCCLDANALFSASGS--ADFTAKLW   88 (264)
Q Consensus        28 ~~~g~~l~t~s~----------d~~v~i~~~~~~~~~~~~~~H~-------~~V~~v~~~~~~~~l~s~s--~D~~v~iw   88 (264)
                      +|||+.|..+..          +..|.+||..+++.++++.--.       ..-..+++++|+++++...  -+..|-+.
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~Vv  133 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVV  133 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEE
Confidence            358887776665          7789999999999988875311       1224688999999887554  37899999


Q ss_pred             eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe---EeccC-CCCeEE-EEEecCCCeEEEE
Q 024676           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNS-SGSIRT-VAWLHSDQTILSS  163 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~---~~~~~-~~~i~~-~~~~~~~~~~~~~  163 (264)
                      |+.+++.+..+.-.........++....  +-+.|+......+++......   ..... ..++.. -.+.+.++..+..
T Consensus       134 D~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v  211 (352)
T TIGR02658       134 DLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP  211 (352)
T ss_pred             ECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence            9999998888775554433333333322  123444443333322111000   00000 000000 0234423444434


Q ss_pred             eeCCCeEEEEECCCCc-----eeEEecC--------CCCEEEEEEcCCCcEEEE-eC----------CCcEEEEECCCce
Q 024676          164 CTDSGGVRLWDARSGK-----IVQTLET--------KSPVTSAEVSRDGRYITT-AD----------GSSVKFWDANHFG  219 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~-----~~~~~~~--------~~~v~~~~~s~~~~~l~~-~~----------~~~i~iwd~~~~~  219 (264)
                      ... |.|.+.|+.+..     ....+..        ...+.-++++|+++.+.. ..          ++.|.++|..+++
T Consensus       212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence            344 999999965432     2222211        112344999999865432 21          2579999999999


Q ss_pred             eeeEEecCCCCceeeEcCCCC-CEEEEecCCCeEEEEEcCcceee
Q 024676          220 LVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~-~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+..+.....+..+.++++.. .++++...++.|.++|+.+++.+
T Consensus       291 vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       291 RLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             EEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence            999998887888888988644 34445557888999999999876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=7.5e-09  Score=87.23  Aligned_cols=237  Identities=17%  Similarity=0.246  Sum_probs=150.8

Q ss_pred             eeEeccCCCCCeEEEEEeC----CCCcEEEeCCC--Cce--EEeeeCCcCCEEEEEECCCCcEEEEec-CCCeEEEEeCC
Q 024676           21 DLFYSPITPDGFFLVSASK----DSSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDAL   91 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~----d~~v~i~~~~~--~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s-~D~~v~iwd~~   91 (264)
                      -|.++|   ++++|.+...    ++.|..|.+..  +++  +.........-..+++++++.+++++. .+++|.++++.
T Consensus        41 ~l~~~~---~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   41 WLAVSP---DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             CEEE-T---TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEe---CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            456664   8888888877    45777776554  443  333331222334589999999887664 58999999997


Q ss_pred             C-CcEEE---Eeec-----------CCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCe----EeccCCCCeEEE
Q 024676           92 T-GDEKH---SFEH-----------KHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPR----EVGNSSGSIRTV  151 (264)
Q Consensus        92 ~-~~~~~---~~~~-----------~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~----~~~~~~~~i~~~  151 (264)
                      . +....   .+.+           ......+.++|+++++++... ...|.+|+++.......    .........+.+
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~  197 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL  197 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence            7 33222   2211           234678899999999888654 36799999876542221    122344567888


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECC--CCce--eEEecC-------CCCEEEEEEcCCCcEEEEeC--CCcEEEEECC--
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDAR--SGKI--VQTLET-------KSPVTSAEVSRDGRYITTAD--GSSVKFWDAN--  216 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~--~~~~~~-------~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~--  216 (264)
                      +|.|++..+.+.+-.+++|.++++.  +++.  +..+..       ......+.++|||++|-.+.  .+.|.+|++.  
T Consensus       198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred             EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence            9999888888887788999999988  4432  222221       12578899999999875543  4689999983  


Q ss_pred             C--ceeeeEEec-CCCCceeeEcCCCCCEEE-EecCCCeEEEEEc--Ccce
Q 024676          217 H--FGLVKGYNM-PCNTESASLEPKLGNIFI-AGGEDMWVHVFDF--HTGE  261 (264)
Q Consensus       217 ~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~gs~d~~v~vwd~--~~g~  261 (264)
                      +  .+.+..+.. ...+..+.+.++ |++|+ +...++.|.+|++  ++|.
T Consensus       278 ~g~l~~~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  278 TGTLTLVQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             TTTEEEEEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCceEEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCCCCc
Confidence            2  244555554 344677788875 56555 5557789999965  4665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=9e-10  Score=95.69  Aligned_cols=212  Identities=14%  Similarity=0.093  Sum_probs=131.9

Q ss_pred             cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-
Q 024676           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-  118 (264)
Q Consensus        43 v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-  118 (264)
                      +.++|...+. .+.+..+...+....|+||++.++..+.+   ..+.+||+.+++..........+....|+|+++.|+ 
T Consensus       181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            5556665443 34555577788999999999988765533   368889998887554433344455688999998776 


Q ss_pred             EeeCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEE
Q 024676          119 TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAE  194 (264)
Q Consensus       119 s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~  194 (264)
                      +...++  .|.++|+.+++.  ..+...........|+|++..++.+...++  .|.++|+.+++...............
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~  337 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR  337 (430)
T ss_pred             EEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence            444444  577889876543  233333344556688988887766654433  57777888877543222222234568


Q ss_pred             EcCCCcEEEEeC--CC--cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC-C--CeEEEEEcCc
Q 024676          195 VSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-D--MWVHVFDFHT  259 (264)
Q Consensus       195 ~s~~~~~l~~~~--~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-d--~~v~vwd~~~  259 (264)
                      |+|+|+.++...  ++  .|.+||+.+++. +.+..........+.|+ |++++..+. +  ..++++++..
T Consensus       338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spd-g~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPN-GTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCC-CCEEEEEEecCCceEEEEEECCC
Confidence            999998876532  22  578899887653 22322222234567775 666665443 2  3466667643

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.8e-09  Score=93.46  Aligned_cols=201  Identities=15%  Similarity=0.058  Sum_probs=119.3

Q ss_pred             CeeeeEeccCCCCCeE---EEEEeCCCC--cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec-C----CCeEEE
Q 024676           18 PVVDLFYSPITPDGFF---LVSASKDSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-A----DFTAKL   87 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~---l~t~s~d~~--v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s-~----D~~v~i   87 (264)
                      ++..=+|+|   ||+.   +.+...++.  |.+.++.+++.. .+....+.....+|+|||+.++..+ .    |..+.+
T Consensus       186 ~~~sP~wSP---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        186 LSITPTWMH---IGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CcccceEcc---CCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            334446664   8864   235555554  444577776532 2222334455678999998876433 2    334555


Q ss_pred             EeCCCC---cEEEEeecC-CeEEEEEECCCCCEEEEee-CCCcEEEee--CCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           88 WDALTG---DEKHSFEHK-HIVRACAFSEDTHLLLTGG-FEKILRIFD--LNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        88 wd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~s~~-~d~~i~~~d--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      |++.++   ......... .......|+|+++.|+..+ .++...+|.  ++........+......+....|+|++..+
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            776653   323332222 2335678999999777665 456555554  432111223333334456678899988877


Q ss_pred             EEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eC---CCcEEEEECCCceeee
Q 024676          161 LSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGLVK  222 (264)
Q Consensus       161 ~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~---~~~i~iwd~~~~~~~~  222 (264)
                      +.+...+  ..|.+||+.+++..........+....|+|||+.|+. +.   ...|.++|+..++...
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~  409 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK  409 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            6665443  3699999999876543333335677899999987653 32   2468888987765433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=1.7e-10  Score=92.84  Aligned_cols=189  Identities=11%  Similarity=0.160  Sum_probs=125.8

Q ss_pred             CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCC-
Q 024676           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAP-  137 (264)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~-  137 (264)
                      ..++.++|++.-..++.+.-|-+||+||-.... -..+.  ....|.+++|-|.+ +.++.|+. +.|.+|.....-.. 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence            456889999866667888999999999976632 22232  34579999999965 44555555 55788975321100 


Q ss_pred             -----------CeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEE-E
Q 024676          138 -----------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYIT-T  204 (264)
Q Consensus       138 -----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~-~  204 (264)
                                 .....+..-+|..++|.+++..++.++..+..|.|||..++..+... .....+..+.|||||.++. +
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence                       00111122468999999887766666667889999999999876544 3445688999999997754 4


Q ss_pred             eCCCcEEEEEC-CCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeE
Q 024676          205 ADGSSVKFWDA-NHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWV  252 (264)
Q Consensus       205 ~~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v  252 (264)
                      .-|+..++|+. +.....+-...+......+++|++..+|.+.+..-.+
T Consensus       257 t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l  305 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL  305 (445)
T ss_pred             cccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence            55899999954 3343333333344555678888755555566555433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.7e-09  Score=94.15  Aligned_cols=212  Identities=13%  Similarity=0.079  Sum_probs=125.9

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC-CC--eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~-D~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  118 (264)
                      .+.++|..... .+.+-.+...+....|+||++.++..+. ++  .|.+||+.+++...............|+|+++.|+
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            34445654332 3345456678888999999998876543 33  58888988876543332233345678999999776


Q ss_pred             E-eeCCCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEE
Q 024676          119 T-GGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA  193 (264)
Q Consensus       119 s-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~  193 (264)
                      . ...++.  |.++|+++++.  ..+..+.......+|+|++..++.+...++  .|.++|+.+++..............
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~  355 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKAL--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG  355 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence            4 455564  67778776542  333333344566789998887776655444  4666788887754322122223356


Q ss_pred             EEcCCCcEEEEe-C-CC--cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE-ecCCCe--EEEEEcC
Q 024676          194 EVSRDGRYITTA-D-GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGEDMW--VHVFDFH  258 (264)
Q Consensus       194 ~~s~~~~~l~~~-~-~~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~d~~--v~vwd~~  258 (264)
                      .|+|||++++.. . ++  .|.++|+.+++.. .+..........+.|+ |++++. ...++.  +++++.+
T Consensus       356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spd-G~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPN-GTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCC-CCEEEEEEecCCceEEEEEECC
Confidence            899999877543 2 33  4556787766532 2221112223467775 555554 434443  6667764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.36  E-value=3.1e-12  Score=105.59  Aligned_cols=181  Identities=17%  Similarity=0.209  Sum_probs=136.0

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      .+|..|.|-|   .-.+|++++..|-+..-|+.+|+.+..|..-.+.+..++-.|-+..+-+|-..|+|-+|.-...+++
T Consensus       210 ~~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  210 IRVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             Cchhhhcccc---hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence            4577788886   6678999999999999999999999988877888888999998888999999999999998887765


Q ss_pred             EE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE-
Q 024676           97 HS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD-  174 (264)
Q Consensus        97 ~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd-  174 (264)
                      .. +.|..+|.+++++++|++++|++.|+.++|||++.-........++  +...++++.  ..+++.+.. ..|.||- 
T Consensus       287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~--~a~~ls~Sq--kglLA~~~G-~~v~iw~d  361 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH--PASNLSLSQ--KGLLALSYG-DHVQIWKD  361 (545)
T ss_pred             HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC--Ccccccccc--ccceeeecC-Ceeeeehh
Confidence            54 5799999999999999999999999999999998765433333222  334455553  335554444 5899994 


Q ss_pred             CCCCc--e-eEEe--cCCCCEEEEEEcCCCcEEEEe
Q 024676          175 ARSGK--I-VQTL--ETKSPVTSAEVSRDGRYITTA  205 (264)
Q Consensus       175 ~~~~~--~-~~~~--~~~~~v~~~~~s~~~~~l~~~  205 (264)
                      .-.+.  . ..-+  ....+|..+.|.|-...|-.+
T Consensus       362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIG  397 (545)
T KOG1272|consen  362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIG  397 (545)
T ss_pred             hhcCCCCCCcchhhhccCcccccceeccHHHeeecc
Confidence            32211  1 1111  223578999999866555443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=9.3e-10  Score=95.81  Aligned_cols=196  Identities=13%  Similarity=0.057  Sum_probs=119.5

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCC-C--CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCCe--EEE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKD-S--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFT--AKL   87 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d-~--~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~~--v~i   87 (264)
                      .+..++....|+|   ||++|+..+.+ +  .+.++|+.+++... +..-.+.....+|+||++.++ +.+.++.  |.+
T Consensus       215 ~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        215 RSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             cCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            3455667788885   99988876543 3  46677888876432 221122334678999998775 5666775  666


Q ss_pred             EeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        88 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      +|+.+++......+........|+|+++.++..+. ++  .+.++|+.+++.  ..+..........+|+|++..++.+.
T Consensus       291 ~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        291 VDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             EECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEEecCCCCCcCeeECCCCCEEEEEE
Confidence            78887765444444445567789999998876553 33  455667765542  22211122233457888888776665


Q ss_pred             eCCCe--EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe--CCC--cEEEEECC
Q 024676          165 TDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGS--SVKFWDAN  216 (264)
Q Consensus       165 ~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~--~i~iwd~~  216 (264)
                      ..++.  |.++|+.+++... +..........|+|||+.++.+  .++  .+.+++..
T Consensus       369 ~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             ecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            55554  5557888876533 2221122244799999876542  333  36666763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.33  E-value=5.3e-10  Score=87.70  Aligned_cols=246  Identities=13%  Similarity=0.113  Sum_probs=154.4

Q ss_pred             CCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeCCCCceEEeee---CCcCC---EEEEEECCCCcEEEEecCCCeEEEE
Q 024676           16 SRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFE---GHKGA---VWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~---~H~~~---V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      +..+..+.|.-.-.+|. .|+-+.++|.++++...-.+-...|+   +.+-.   -.++.|++-+..++++-.+|.+-+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            44456777776556676 67788889999988554333222332   22222   2456778888888888888888855


Q ss_pred             eCCCCcEEE--Ee-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCC-CCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           89 DALTGDEKH--SF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        89 d~~~~~~~~--~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      +........  .+ .|+-+...+.|+. +.+++++|+.|+.+.-||++.+. ...+....|...|.++.-+|+.++++++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            544333222  33 3777888888877 45789999999999999998443 2223233466678888878888899999


Q ss_pred             eeCCCeEEEEECC-CCceeEEecCCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCc--e---eeeEEecCCC-Cceee
Q 024676          164 CTDSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHF--G---LVKGYNMPCN-TESAS  234 (264)
Q Consensus       164 ~~~d~~v~iwd~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~--~---~~~~~~~~~~-~~~~~  234 (264)
                      |+.|..|++||.| -++++..-.....|-.+..+|.-  +++++.=-+..+|-+....  +   ....++.+.. ..-..
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D  308 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD  308 (339)
T ss_pred             eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence            9999999999999 57777666666778888888853  2333332223444444322  1   1122222211 11122


Q ss_pred             EcCCCCCEEEEe-cCCCeEE-EEEcCccee
Q 024676          235 LEPKLGNIFIAG-GEDMWVH-VFDFHTGEQ  262 (264)
Q Consensus       235 ~~~~~~~~~~~g-s~d~~v~-vwd~~~g~~  262 (264)
                      +... ..+|+|+ ..|+.++ +|-.-+|+.
T Consensus       309 Wd~~-~~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  309 WDSK-DSFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             cccc-cceeeeeeccccceeeeeeeccCCc
Confidence            3222 3456764 4588766 887666664

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.33  E-value=1.2e-11  Score=98.20  Aligned_cols=218  Identities=17%  Similarity=0.230  Sum_probs=138.1

Q ss_pred             eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEee
Q 024676           22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        22 ~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~  100 (264)
                      +.|+   |+|+++|+++.- .+-|.|.++.+..+-|.. -+.|.-+.|..|..++ .....|+.|.+|++.+.+-...+.
T Consensus        14 c~fS---p~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   14 CSFS---PCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             eeEC---CCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence            4566   599999999877 455778877765444332 3566778999998875 567889999999998877555553


Q ss_pred             -cCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676          101 -HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (264)
Q Consensus       101 -~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~  178 (264)
                       ...++...+|+|++ .+|.+...+-.|.+|.+.+....  .+...+..+..+++.++++ +.+-++.-.......+...
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECCCCc-eeeeeecccHHHHHHHHhh
Confidence             45678899999999 55556678999999999875432  2333444556778777665 4444443111111111111


Q ss_pred             ---ceeEEecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEE
Q 024676          179 ---KIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHV  254 (264)
Q Consensus       179 ---~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~v  254 (264)
                         +.+..+... -....+.|+|||..++.        ||.--.-.+-.|.-.-......+.| .+++++.|+.|+.+|+
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laV--------wd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------WDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRV  236 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEE--------ecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhh
Confidence               112223222 23567899999877765        3321111111233233344556777 4899999999999998


Q ss_pred             EE
Q 024676          255 FD  256 (264)
Q Consensus       255 wd  256 (264)
                      -|
T Consensus       237 ln  238 (447)
T KOG4497|consen  237 LN  238 (447)
T ss_pred             hc
Confidence            76

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.32  E-value=1.1e-08  Score=97.11  Aligned_cols=236  Identities=11%  Similarity=0.131  Sum_probs=151.3

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC--C------------cCCEEEEEECCCCcEE-EEecCCCeE
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--H------------KGAVWSCCLDANALFS-ASGSADFTA   85 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~--H------------~~~V~~v~~~~~~~~l-~s~s~D~~v   85 (264)
                      .++.++  .+|+..++-+..+.|+++|.. +..+..+.+  .            -..-..+++++++..+ ++-...+.|
T Consensus       572 gvavd~--~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        572 KLAIDL--LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             eEEEEC--CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            456654  246677777888889999875 544444432  1            1124678998877644 445556789


Q ss_pred             EEEeCCCCcEEEEeec------------------CCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEec----
Q 024676           86 KLWDALTGDEKHSFEH------------------KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG----  142 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~----  142 (264)
                      +.+|..++... ++..                  -.....++++| ++.++++.+.++.|++||...+... ...+    
T Consensus       649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE  726 (1057)
T ss_pred             EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence            99998776432 2210                  01235789999 5666666677889999998654321 0000    


Q ss_pred             ----------cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec--------------C--------CCCE
Q 024676          143 ----------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------------T--------KSPV  190 (264)
Q Consensus       143 ----------~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--------------~--------~~~v  190 (264)
                                ..-.....+++.+++..++++...++.|++||++++.......              .        ....
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                      0012345688888888788787888999999998765321110              0        0123


Q ss_pred             EEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC--------------CCCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676          191 TSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--------------CNTESASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       191 ~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                      ..++++++|.++++ ..++.|++||..++.........              ..+..+++.+ +|+++++-+.++.|++|
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence            57889999976665 44679999999877654322111              1233455666 47899999999999999


Q ss_pred             EcCccee
Q 024676          256 DFHTGEQ  262 (264)
Q Consensus       256 d~~~g~~  262 (264)
                      |+.+++.
T Consensus       886 d~~~~~~  892 (1057)
T PLN02919        886 DLNKGEA  892 (1057)
T ss_pred             ECCCCcc
Confidence            9988764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=8.2e-12  Score=105.51  Aligned_cols=203  Identities=18%  Similarity=0.272  Sum_probs=141.3

Q ss_pred             EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC-------cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcE
Q 024676           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-------DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKIL  126 (264)
Q Consensus        55 ~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i  126 (264)
                      ..|.||...|++++--.+..-++++|.|++||+|.+...       .+..++ .|+.+|..+.|-.+.+.+++  -|+.|
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence            457899999999887777777899999999999987542       244555 48899999988888777764  57899


Q ss_pred             EEeeCCCCCCCC-eEeccCCCCeEEEEEecC-CCe-EEEEeeCCCeEEEEECCCCceeEEecC------CCCEEEEEEcC
Q 024676          127 RIFDLNRPDAPP-REVGNSSGSIRTVAWLHS-DQT-ILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEVSR  197 (264)
Q Consensus       127 ~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~-~~~~~~~d~~v~iwd~~~~~~~~~~~~------~~~v~~~~~s~  197 (264)
                      .+||--.+.... ....+..+....+...++ +.. +++.|+...+||++|.|.++-...++.      +..+.++++.+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            999965444332 222222333333333333 444 455668888999999999886655532      23478999999


Q ss_pred             CCcEEEEe-CCCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEE-EEcCcce
Q 024676          198 DGRYITTA-DGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHV-FDFHTGE  261 (264)
Q Consensus       198 ~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~v-wd~~~g~  261 (264)
                      .|+.++++ +.|.|-+.|.|++..+..+.- .|.....+  .+..+.++....|..+-+ |....|.
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhcccceeEeeehhcCCe
Confidence            99877654 578999999999998887743 44433322  223566777777888888 8765554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=4.4e-09  Score=90.98  Aligned_cols=219  Identities=13%  Similarity=0.040  Sum_probs=125.9

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE--E-EEecCCC--eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF--S-ASGSADF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~--l-~s~s~D~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (264)
                      .+.+.|...+.. +.+......+.+=+|+|||+.  + .+...++  .|.+.++.+++...............|+|+++.
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            344555554433 334334455666789999864  2 3444444  466668877765444444445556789999988


Q ss_pred             EEEeeC-----CCcEEEeeCCCCC-CCCeEecc-CCCCeEEEEEecCCCeEEEEeeCCCeEEEE--ECCC-CceeEEec-
Q 024676          117 LLTGGF-----EKILRIFDLNRPD-APPREVGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARS-GKIVQTLE-  185 (264)
Q Consensus       117 l~s~~~-----d~~i~~~d~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw--d~~~-~~~~~~~~-  185 (264)
                      |+..+.     +-.+..|++..+. .....+.. ..+.....+|+|++..++.+...++...||  ++.. +.....+. 
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence            876543     2223446765431 11222222 222335678999888777666555655555  4432 22222232 


Q ss_pred             CCCCEEEEEEcCCCcEEEEe-C-C--CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE-ecC--CCeEEEEEcC
Q 024676          186 TKSPVTSAEVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGE--DMWVHVFDFH  258 (264)
Q Consensus       186 ~~~~v~~~~~s~~~~~l~~~-~-~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~--d~~v~vwd~~  258 (264)
                      ....+....|||||+.|+.. . +  ..|.+||+.+++...............+.|+ |+.|+. +..  ...++++|++
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAID-SLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCC-CCEEEEEECCCCCceEEEEECC
Confidence            23356678999999877643 2 2  3689999988765332222223345677775 665553 332  4578888987


Q ss_pred             ccee
Q 024676          259 TGEQ  262 (264)
Q Consensus       259 ~g~~  262 (264)
                      +++.
T Consensus       404 ~g~~  407 (428)
T PRK01029        404 TKKT  407 (428)
T ss_pred             CCCE
Confidence            7654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.28  E-value=4.2e-10  Score=101.20  Aligned_cols=217  Identities=14%  Similarity=0.197  Sum_probs=149.9

Q ss_pred             EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCe-----EEE
Q 024676           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-----VRA  107 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----v~~  107 (264)
                      +++++..-+.+..-... .+....+..   .|....+.-+.++++.+..+..+-+||...+.......+...     ...
T Consensus        63 ~~v~~~~~~~v~~~~~~-~~~~~~~s~---wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~  138 (967)
T KOG0974|consen   63 KIVTCAKSDEVYVKEAS-NQIIERFSD---WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI  138 (967)
T ss_pred             eEEEEEeecceeecchh-hhhhhhccc---cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence            55666655554432222 111222332   233344455677788888899999999988877666655443     223


Q ss_pred             EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE--Eec
Q 024676          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLE  185 (264)
Q Consensus       108 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~  185 (264)
                      +..+++.-++++|+.-+.+-+|...... +......|.+.+..+.++.+ +.+++++++|+++|+|++++++...  -+.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~~~~fg  216 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDN-KPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLGCTGFG  216 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccC-CcceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccCccccc
Confidence            4456677788889989999999987333 33356678999999998865 4578888999999999999998765  456


Q ss_pred             CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       186 ~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +...+-.+.+.|+ +.++.+.|-+.++|+... ..+..|..+  .....+...+ .....+|++.|+.+++|+..
T Consensus       217 HsaRvw~~~~~~n-~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  217 HSARVWACCFLPN-RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ccceeEEEEeccc-eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhh
Confidence            6778888999999 667778899999996533 233345432  2233444443 46788999999999999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=2.1e-11  Score=103.09  Aligned_cols=235  Identities=19%  Similarity=0.238  Sum_probs=155.2

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-C------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-G------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      -||...|.+++--.   +.+-++++|.|++|++|++.. |      .+..++..|+.+|+.+.|-.+..++++  .|+-+
T Consensus       732 ~GH~~~iRai~Aid---NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi  806 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAID---NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI  806 (1034)
T ss_pred             cCcHHHhHHHHhcc---cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence            48999999876543   456679999999999998754 1      245678899999999999998887775  48999


Q ss_pred             EEEeCCCCcEEEEee---cCCeEEEEEE--CCCCCEEEEe-eCCCcEEEeeCCCCCCCCeEe----ccCCCCeEEEEEec
Q 024676           86 KLWDALTGDEKHSFE---HKHIVRACAF--SEDTHLLLTG-GFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLH  155 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~---~~~~v~~~~~--~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~----~~~~~~i~~~~~~~  155 (264)
                      .+||---+..+...+   ....+..+..  +-+..+++++ +...+++++|.+..+...+..    ...++-+.+++.-+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            999976665444221   1122222222  3245566665 778999999998877654432    22345678888777


Q ss_pred             CCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEE-EeCCCcEEE-EECCCceeeeEEecCCCCce
Q 024676          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKF-WDANHFGLVKGYNMPCNTES  232 (264)
Q Consensus       156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~-~~~~~~i~i-wd~~~~~~~~~~~~~~~~~~  232 (264)
                      .+.++.+ +-..|.|-+.|.|+|+++..+.. ......++. |..++++ +..+..+-+ |-.-.+.  ..++.+..+..
T Consensus       887 ~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgi--mh~q~kpppep  962 (1034)
T KOG4190|consen  887 KGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGI--MHLQDKPPPEP  962 (1034)
T ss_pred             CcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCe--eeeccCCCCcc
Confidence            6665544 45569999999999999887753 333333333 3334444 344666766 6644332  23444444444


Q ss_pred             eeEcCCCCCEEEEecCCCeEEEEE
Q 024676          233 ASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      .-|-..-|..++++.....+.+|.
T Consensus       963 ahflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  963 AHFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             hhhhhccCceeEEeccCcEEEEEe
Confidence            444433466788888888888884

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=5.3e-11  Score=112.02  Aligned_cols=196  Identities=20%  Similarity=0.285  Sum_probs=140.1

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      -..|.++.-+|.-|   +-+||+.||.+++|.-..++.+-.++  |. +.|..+.|+..|..+..+..||.+-+|.+...
T Consensus      2208 v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             cCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence            34556666666433   56799999999999877777665554  34 78888999999988888889999999998733


Q ss_pred             cEEEEeecCCeEEEEEECCCCCEEEEee---CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           94 DEKHSFEHKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ....--.|........|--  ..+++++   .++.+.+||.............|.+..+++++.|..+ ++++|+.+|.|
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~v 2360 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGEV 2360 (2439)
T ss_pred             ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCcE
Confidence            2222223666655555543  4566553   4688999997554433333356788889999988655 67788889999


Q ss_pred             EEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec
Q 024676          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  226 (264)
                      ++||++..+..+.++.        +.....++.++..|.|+||++.....++++..
T Consensus      2361 ~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             EEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCch
Confidence            9999998887777764        33222344455578999999998888877764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.25  E-value=2.7e-10  Score=90.18  Aligned_cols=237  Identities=18%  Similarity=0.298  Sum_probs=149.7

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-----ceEEeeeCCc------------CCEEEEEECCCC--cE
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----DWIGTFEGHK------------GAVWSCCLDANA--LF   75 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-----~~~~~~~~H~------------~~V~~v~~~~~~--~~   75 (264)
                      ..+.|.++.|..   .|.||++|..-|-|.++.-+..     ++...|++|+            ..|..+.|-.++  ..
T Consensus        25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            445688999985   7899999998898888754332     2344566665            346777775432  23


Q ss_pred             EEEecCCCeEEEEeCCCCcE-------------------------------------EE-----Ee--ecCCeEEEEEEC
Q 024676           76 SASGSADFTAKLWDALTGDE-------------------------------------KH-----SF--EHKHIVRACAFS  111 (264)
Q Consensus        76 l~s~s~D~~v~iwd~~~~~~-------------------------------------~~-----~~--~~~~~v~~~~~~  111 (264)
                      +.-..-|+++|+|.+.....                                     +.     .+  .|+..++++.++
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            44445699999998754310                                     00     01  144457788888


Q ss_pred             CCCCEEEEeeCCCcEEEeeCCCCCCCCe--EeccCC-----CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-----
Q 024676          112 EDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-----  179 (264)
Q Consensus       112 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~-----~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-----  179 (264)
                      .+...++++ .|=.|.+|+++.......  .+.+++     ..|++..|.|....++.-++..|.|++-|+|...     
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            888877764 567789999865433222  223332     2245555666555555555666999999998421     


Q ss_pred             e-eE--Eec---------CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCC-ceeeeEEecCCCCc---------------
Q 024676          180 I-VQ--TLE---------TKSPVTSAEVSRDGRYITTADGSSVKFWDANH-FGLVKGYNMPCNTE---------------  231 (264)
Q Consensus       180 ~-~~--~~~---------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~---------------  231 (264)
                      + +.  .+.         .-+.|..+.|+++|+++++-+=-+++|||.+. ..++++.++++...               
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence            1 10  111         12467889999999999887767999999975 46777776654321               


Q ss_pred             -eeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          232 -SASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       232 -~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                       .+.++. +...+.+||.....-+|-
T Consensus       341 FeisfSg-d~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         341 FEISFSG-DDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEEEecC-Ccccccccccccceeeec
Confidence             223333 345677777766666664

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=1.9e-09  Score=91.71  Aligned_cols=187  Identities=13%  Similarity=0.169  Sum_probs=134.7

Q ss_pred             CCCCcEEEEecCCCeEEEEeCCCCcEEEEeec----CCeEEEEEE------CCC-------------C-CEEEEeeCCCc
Q 024676           70 DANALFSASGSADFTAKLWDALTGDEKHSFEH----KHIVRACAF------SED-------------T-HLLLTGGFEKI  125 (264)
Q Consensus        70 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~v~~~~~------~~~-------------~-~~l~s~~~d~~  125 (264)
                      .|-..++|....||.+|+||+..++....|..    .....+..|      +|.             + ..++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567889999999999999998887766642    122222222      221             1 34555677899


Q ss_pred             EEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC-CEEEEEEcCCCcEEE
Q 024676          126 LRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYIT  203 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~  203 (264)
                      |-+|++..++...... +.|.+.+.++.+...-+ .+-+++.|..+-.|+...++.+..+.... .+.+++++|||+.++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence            9999998887665555 56888898888765544 45566778999999999999888886544 488999999998887


Q ss_pred             EeCCCcEEEEECCCceeeeEEecCCCCc-eeeEcCC----CCCE-EEEecCCCeEEEEEcC
Q 024676          204 TADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK----LGNI-FIAGGEDMWVHVFDFH  258 (264)
Q Consensus       204 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~-~~~gs~d~~v~vwd~~  258 (264)
                      ++. +.|++||+++.+.+.+|..+..+. ++.|.-.    .|.+ |.++..+..+.+|-+.
T Consensus       161 ~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  161 TAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             ecc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            663 699999999999999998865543 4444332    1444 4456667778888543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=2.5e-10  Score=107.71  Aligned_cols=184  Identities=13%  Similarity=0.215  Sum_probs=138.2

Q ss_pred             CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeec--CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC
Q 024676           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (264)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~  137 (264)
                      |-..|+.+.-+|...+-+||+.||.|++|....+..+..++.  +..|+.+.|+.+|+.+..+-.||.+.+|.+.  ..+
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKP 2284 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccc
Confidence            445667777777777778999999999999988887777753  3568889999999999999999999999985  222


Q ss_pred             CeEeccCCCCeEEEEEecCCCeEEEE---eeCCCeEEEEECCC--Cc-eeEEecCCCCEEEEEEcCCCcEEEE-eCCCcE
Q 024676          138 PREVGNSSGSIRTVAWLHSDQTILSS---CTDSGGVRLWDARS--GK-IVQTLETKSPVTSAEVSRDGRYITT-ADGSSV  210 (264)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~d~~v~iwd~~~--~~-~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i  210 (264)
                      ......|+.....+.|..   .++++   .++++-+.+||.-.  .. .++ ..+...++++++.|..+++.+ +.+|.|
T Consensus      2285 ~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcE
Confidence            333334566666666664   23333   34678899999643  22 333 445567999999999877655 568999


Q ss_pred             EEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          211 KFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       211 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      .+||++..+..++|+.        +.  ..++|++|+..|.++||+++.
T Consensus      2361 ~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             EEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccc
Confidence            9999998887777764        22  468999999999999999864

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.16  E-value=2.6e-08  Score=77.53  Aligned_cols=205  Identities=12%  Similarity=0.050  Sum_probs=134.1

Q ss_pred             eeEeccCCC--CCeEEEEEeCCCCcEEEeCCCCce-EEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcEE
Q 024676           21 DLFYSPITP--DGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        21 ~~~~~~~~~--~g~~l~t~s~d~~v~i~~~~~~~~-~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      .+.|-|.+-  ..-+||.|++.|...+|...+.+. .+....|...|.-+.=.-+. .-+.-++-|+++|+.++.-+...
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            467777552  234889999999999999987763 34444454433221111111 22345677888999887655432


Q ss_pred             EEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC-e-EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676           97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-R-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus        97 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      ...- ..-.++.++++++++++++.+..+.+..|.++...... . ...+....-.+..|+..+ ..++++..||++.||
T Consensus       152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIY  230 (344)
T ss_pred             ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEE
Confidence            2221 11237899999999999999999999999986543322 2 223334455667777654 467778899999999


Q ss_pred             ECCCCc-eeEEe-----cCCCCEEEEEEcCCCc--EEEEeCC-CcEEEEECCCceeeeEEec
Q 024676          174 DARSGK-IVQTL-----ETKSPVTSAEVSRDGR--YITTADG-SSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       174 d~~~~~-~~~~~-----~~~~~v~~~~~s~~~~--~l~~~~~-~~i~iwd~~~~~~~~~~~~  226 (264)
                      |+|.-. ++...     .++..+..+.|+|.|.  +|..++. +.+++-|+|++.-++.+-+
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            998643 22221     2456799999998774  4555554 7899999999876655544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.16  E-value=6.6e-08  Score=82.61  Aligned_cols=223  Identities=13%  Similarity=0.064  Sum_probs=137.7

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA  109 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~  109 (264)
                      .+.+++.++.++.+.-+|..+|+.+-.++...........  ++..++.++.|+.+..+|..+|+.+........+....
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            3557888899999999999999865433322211111222  35566777889999999999998877765444433211


Q ss_pred             ECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC----CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec
Q 024676          110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE  185 (264)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~  185 (264)
                      .. .+..++.++.++.+..+|.++++...+.......    ........  ++. +..+..++.+..+|+++|+.+....
T Consensus       142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~-v~~~~~~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGG-VLVGFAGGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCE-EEEECCCCEEEEEEccCCCEeeeec
Confidence            11 2456777788999999999888765543221100    00011111  233 3445566899999999998776543


Q ss_pred             CCCC-----------E-EEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEE
Q 024676          186 TKSP-----------V-TSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVH  253 (264)
Q Consensus       186 ~~~~-----------v-~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~  253 (264)
                      ...+           + .+..+ .++..++++.++.+..||.++++.+-....... .....   .+..++.++.|+.++
T Consensus       218 ~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~  292 (377)
T TIGR03300       218 VALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVV  292 (377)
T ss_pred             cccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEE
Confidence            2111           0 01111 145566667788999999998876654443221 11111   245677778899999


Q ss_pred             EEEcCcceee
Q 024676          254 VFDFHTGEQI  263 (264)
Q Consensus       254 vwd~~~g~~i  263 (264)
                      .+|.++|+++
T Consensus       293 ~~d~~tG~~~  302 (377)
T TIGR03300       293 ALDRRSGSEL  302 (377)
T ss_pred             EEECCCCcEE
Confidence            9999999864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.16  E-value=4.7e-08  Score=83.52  Aligned_cols=224  Identities=16%  Similarity=0.153  Sum_probs=135.9

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA  109 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~  109 (264)
                      ++..++.++.|+.+.-+|..+|+.+-..... +.+.+.... .+..++.++.|+.+..||..+++.+...+...+...+.
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~  181 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR  181 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence            4556778888999999999999865333221 222221111 23355566779999999999998777665433221110


Q ss_pred             --ECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-CCCC--------e-EEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676          110 --FSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGS--------I-RTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus       110 --~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~--------i-~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                        -+|  .+..++.+..++.+..+|.++++........ ..+.        + .... . .++.+++ ++.++.+..||.
T Consensus       182 ~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~-~-~~~~vy~-~~~~g~l~a~d~  258 (377)
T TIGR03300       182 GSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV-V-DGGQVYA-VSYQGRVAALDL  258 (377)
T ss_pred             CCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE-E-ECCEEEE-EEcCCEEEEEEC
Confidence              011  1246777888899999998887655432211 0000        0 0011 1 1344444 445699999999


Q ss_pred             CCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEE-ecCCCC-ceeeEcCCCCCEEEEecCCCeEE
Q 024676          176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY-NMPCNT-ESASLEPKLGNIFIAGGEDMWVH  253 (264)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~gs~d~~v~  253 (264)
                      ++|+.+....... ....... ++++++...++.+..+|..+++.+-.+ ...... .+...   .+..+++++.|+.++
T Consensus       259 ~tG~~~W~~~~~~-~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~  333 (377)
T TIGR03300       259 RSGRVLWKRDASS-YQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLH  333 (377)
T ss_pred             CCCcEEEeeccCC-ccCceEe-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEE
Confidence            9999877665322 1122222 445556667889999999988766444 222111 11111   256788899999999


Q ss_pred             EEEcCcceee
Q 024676          254 VFDFHTGEQI  263 (264)
Q Consensus       254 vwd~~~g~~i  263 (264)
                      ++|..+|+++
T Consensus       334 ~~d~~tG~~~  343 (377)
T TIGR03300       334 WLSREDGSFV  343 (377)
T ss_pred             EEECCCCCEE
Confidence            9999999875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.15  E-value=1.7e-09  Score=91.95  Aligned_cols=145  Identities=19%  Similarity=0.240  Sum_probs=123.0

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVR  106 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~  106 (264)
                      |-.+++-|..-|.|.+++...|+....+.  +|-+.|.++.++.+-.++.|++.|+.+-.|+......++.+. .+..+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~  148 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS  148 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence            45688999999999999999999888886  599999999999999999999999999999999988888775 445688


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC-----CCeEEEEeeCCCeEEEEECCC
Q 024676          107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-----DQTILSSCTDSGGVRLWDARS  177 (264)
Q Consensus       107 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~d~~v~iwd~~~  177 (264)
                      .++++|+++.+++++  +.|++||+++.+. .+.+.+|.+++++++|...     +.+++.+...+..+.+|=.+.
T Consensus       149 sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  149 SLCISPDGKILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEcCCCCEEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999999999887  7899999998765 4566778999999998765     566777766667788886654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.15  E-value=1.1e-09  Score=89.23  Aligned_cols=158  Identities=15%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             CCCCCeEEEEEeCCCCcEEEeCCCCc----eEEeeeC--CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee
Q 024676           27 ITPDGFFLVSASKDSSPMLRNGETGD----WIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        27 ~~~~g~~l~t~s~d~~v~i~~~~~~~----~~~~~~~--H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  100 (264)
                      .++++++||.+..++.+.+++.....    ++..+..  ....+..+..+......-..+....+.+|....+.+...+.
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG  149 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILG  149 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhh
Confidence            34678899888888887676654332    2222222  22334444444434444456777888888877777777778


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce
Q 024676          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (264)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~  180 (264)
                      |-+-+..++++|++++++++..|..||+-.............+|+.-|..++..+ +. .+++++.|++|++||+++|++
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~-~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NY-LLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-Cc-eeeecCCCCcEEEEecccCCc
Confidence            8899999999999999999999999999877655444444556777777777654 33 366777789999999999998


Q ss_pred             eEEecC
Q 024676          181 VQTLET  186 (264)
Q Consensus       181 ~~~~~~  186 (264)
                      ++++..
T Consensus       228 L~t~dl  233 (390)
T KOG3914|consen  228 LDTCDL  233 (390)
T ss_pred             ccccch
Confidence            876643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2.2e-08  Score=84.97  Aligned_cols=115  Identities=21%  Similarity=0.371  Sum_probs=86.0

Q ss_pred             cCCCCeEEEEEecCCCeEEEE-eeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEE-EeC---CCcEEEEECCC
Q 024676          143 NSSGSIRTVAWLHSDQTILSS-CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TAD---GSSVKFWDANH  217 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~-~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~---~~~i~iwd~~~  217 (264)
                      ...++|.++.|++++.-+.+. |..--.+.|+|++ +.++..+.. .+-+.+.|+|.|++++ ++-   .|.|.+||+.+
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e-gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE-GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC-CCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            347899999999987655443 4444689999988 556665544 5778899999998864 443   37899999999


Q ss_pred             ceeeeEEecCCCCceeeEcCCCCCEEEEecC------CCeEEEEEcCccee
Q 024676          218 FGLVKGYNMPCNTESASLEPKLGNIFIAGGE------DMWVHVFDFHTGEQ  262 (264)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~------d~~v~vwd~~~g~~  262 (264)
                      ++++..+... +.....|+| +|++|+|+.+      |..++||+. +|.+
T Consensus       346 ~K~i~~~~a~-~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy-tG~~  393 (566)
T KOG2315|consen  346 RKLIAKFKAA-NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY-TGSL  393 (566)
T ss_pred             hhhccccccC-CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe-cCce
Confidence            9888777653 334567888 5899998876      678999997 4654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.14  E-value=2.3e-08  Score=79.62  Aligned_cols=216  Identities=17%  Similarity=0.172  Sum_probs=128.6

Q ss_pred             CCCcEEEeCCCCceEEeeeC---CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE
Q 024676           40 DSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~---H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (264)
                      ++++..+|..+|+.+-...-   ..+.+ +..+ +++..++.++.++.+..||..+|+.+..+....++.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence            56788888888876544321   22222 1122 245556666889999999999999888776543322111 123455


Q ss_pred             EEEeeCCCcEEEeeCCCCCCCCeE-eccC-C-CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCC----
Q 024676          117 LLTGGFEKILRIFDLNRPDAPPRE-VGNS-S-GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP----  189 (264)
Q Consensus       117 l~s~~~d~~i~~~d~~~~~~~~~~-~~~~-~-~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----  189 (264)
                      ++.++.++.+..+|..+++..... .... . ...........+..+++. ..++.|..+|+++|+.+.......+    
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG-TSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE-ETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEE-eccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            666778889999998888876663 3221 1 111111111124444444 4469999999999999877654321    


Q ss_pred             -------EEEEEEcCCCcEEEEeCCCc-EEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          190 -------VTSAEVSRDGRYITTADGSS-VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       190 -------v~~~~~s~~~~~l~~~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                             +..-.+..++..+++..++. +.+ |+.+++.+  +..+.......... .+..++.++.++.+..||+++|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~--w~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  158 PISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL--WSKPISGIYSLPSV-DGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             -EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE--EEECSS-ECECEEC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred             ceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE--EEecCCCccCCcee-eCCEEEEEeCCCEEEEEECCCCC
Confidence                   12222233455556665554 666 99999855  32221111111233 35667766699999999999999


Q ss_pred             ee
Q 024676          262 QI  263 (264)
Q Consensus       262 ~i  263 (264)
                      ++
T Consensus       234 ~~  235 (238)
T PF13360_consen  234 VV  235 (238)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.1e-06  Score=71.28  Aligned_cols=239  Identities=15%  Similarity=0.195  Sum_probs=151.6

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCC---CCcEE--EeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEEecCC-CeEE
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKD---SSPML--RNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSAD-FTAK   86 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d---~~v~i--~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~D-~~v~   86 (264)
                      +..-..=|+|+|   ++++|.++-.+   +.|.-  ||.++|++.  .....-..+-..++++++++++++++.. +.|.
T Consensus        38 ~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          38 ELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             ccCCCceEEECC---CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            444445567775   78888888666   44444  455556542  1111112232568999999998877554 7899


Q ss_pred             EEeCCC-Cc---EEEEeecCCe----------EEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeE--eccCCCCeE
Q 024676           87 LWDALT-GD---EKHSFEHKHI----------VRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE--VGNSSGSIR  149 (264)
Q Consensus        87 iwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~--~~~~~~~i~  149 (264)
                      ++.+.. |.   ......|...          +....+.|++++|+++.. -..|.+|++..+......  ........+
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            998865 43   2333445444          778889999999998754 256889999866543322  123344567


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEECCCC--c--eeEEe-------cCCCCEEEEEEcCCCcEEEEeCC--CcEEEEECC
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWDARSG--K--IVQTL-------ETKSPVTSAEVSRDGRYITTADG--SSVKFWDAN  216 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~--~--~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~--~~i~iwd~~  216 (264)
                      .+.|.|+++...+.+--+++|-+|.....  +  +++.+       ........+.++|||+||-+++-  ..|-++.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            88888888776666666789999998763  2  22222       12345778899999999987763  367777664


Q ss_pred             Cc-e---eeeEEecCCC-CceeeEcCCCCCEEEEecC-CCeEEEEEc
Q 024676          217 HF-G---LVKGYNMPCN-TESASLEPKLGNIFIAGGE-DMWVHVFDF  257 (264)
Q Consensus       217 ~~-~---~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~-d~~v~vwd~  257 (264)
                      .. .   .+........ +..+.+.+ .+++|+++++ +..+.+|..
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEE
Confidence            32 2   2222222333 56677776 4777776665 456888853

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.5e-09  Score=89.75  Aligned_cols=240  Identities=18%  Similarity=0.205  Sum_probs=159.7

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--C-ceEEeeeCCcCCEEEEEECCCCcEEEEecC-CCeEEEEeC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--G-DWIGTFEGHKGAVWSCCLDANALFSASGSA-DFTAKLWDA   90 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~-~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~-D~~v~iwd~   90 (264)
                      |.+.|..+.-.    -.+++.++|.||.++.|-..-  | +.+..|..|.+.|.+++.+.++.++.|.+. |+.+|++|+
T Consensus         8 hrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            67777777543    346899999999999996532  3 467788899999999999999999999877 999999998


Q ss_pred             CCCcEEEEeecCCeEEEEEE--CCCC--CEEEEe-eCCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           91 LTGDEKHSFEHKHIVRACAF--SEDT--HLLLTG-GFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~--~~~~--~~l~s~-~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      .+-....-.........+.|  +|..  ..++.. -.++.+.++|-..... .....+-|..++.++.+++.+.. +++.
T Consensus        84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSi  162 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSI  162 (558)
T ss_pred             eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-eeec
Confidence            77553332222222222223  2321  133333 3468899999765442 23344567889999998887665 4455


Q ss_pred             eCCCeEEEEECCC------CceeEEec----------CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC
Q 024676          165 TDSGGVRLWDARS------GKIVQTLE----------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       165 ~~d~~v~iwd~~~------~~~~~~~~----------~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      ...|.|.-|..+.      .+....++          ..+...++.++|++..++. +.|+.|++++.++++.++.+.-.
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~  242 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV  242 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence            5568999999873      11111222          2345788999999988765 56899999999887665443210


Q ss_pred             -----C-----------------------------CCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          228 -----C-----------------------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       228 -----~-----------------------------~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                           +                             ....+.|.. .+.+|+.|+-=| |+|.++.+++
T Consensus       243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~  308 (558)
T KOG0882|consen  243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNT  308 (558)
T ss_pred             chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCe
Confidence                 0                             011233333 577777777655 8888887765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.8e-08  Score=82.37  Aligned_cols=241  Identities=17%  Similarity=0.163  Sum_probs=141.6

Q ss_pred             EeeccCCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLW   88 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iw   88 (264)
                      ++++|...|..|+|+|   ... +|..++.+..+.|.|+++...+..+..| .++++++|.-|.. ++..|-..|.|.|+
T Consensus       188 ~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             cccccchhhhhhccCc---cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            4578999999999997   333 7889999999999999999888888888 8999999998764 57889999999999


Q ss_pred             eCCCCc-EEEEee---cCCeEEEEEE------CCCCCEEEEeeCCCcEEEeeCCCC--CCCCeEeccCCCCeEEEEEecC
Q 024676           89 DALTGD-EKHSFE---HKHIVRACAF------SEDTHLLLTGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        89 d~~~~~-~~~~~~---~~~~v~~~~~------~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~  156 (264)
                      |+...+ .+..+.   ..++|..++.      .+.+.+|+..+.+  ...|++...  ..+........+....+++.+.
T Consensus       264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~  341 (463)
T KOG1645|consen  264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV  341 (463)
T ss_pred             EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence            997654 111111   1234444332      2334444444433  334654321  1122122223444555555555


Q ss_pred             CCeEEEEeeCC------CeEEE-EECCCCceeEEec-C--C---C---CEEEEEEcCCCcEEEE-eC-CCcEEEEECCCc
Q 024676          157 DQTILSSCTDS------GGVRL-WDARSGKIVQTLE-T--K---S---PVTSAEVSRDGRYITT-AD-GSSVKFWDANHF  218 (264)
Q Consensus       157 ~~~~~~~~~~d------~~v~i-wd~~~~~~~~~~~-~--~---~---~v~~~~~s~~~~~l~~-~~-~~~i~iwd~~~~  218 (264)
                      ..+++++.-.+      +.|-. -|-+.|..+..-. .  .   .   .-..+.-.+++++++. ++ .+.+.+||...+
T Consensus       342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence            56666653221      00111 1222232221110 0  0   0   1112233456666654 33 368999999999


Q ss_pred             eeeeEEecCCCCceeeEcC-CCCCEEEEecCCCeEEEEEcC
Q 024676          219 GLVKGYNMPCNTESASLEP-KLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +.+.++........+.... +.+.+|++ =+|..++||..+
T Consensus       422 evvQ~l~~~epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  422 EVVQTLALSEPVLDICPNDTNGSSYLAL-LTDDRVHIYKNE  461 (463)
T ss_pred             heeeecccCcceeecceeecCCcchhhh-eecceEEEEecC
Confidence            9999998875544333322 22344444 457779998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.07  E-value=7.5e-09  Score=81.36  Aligned_cols=153  Identities=16%  Similarity=0.190  Sum_probs=108.4

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCC-CcEE
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALT-GDEK   96 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~-~~~~   96 (264)
                      ++.|++   .+..++++-.+|.+.+-+.....  .+++.++|+-+.+..+|+... ..+.||+.|+.+.-||++. ++.+
T Consensus       126 slD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  126 SLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             EEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            344553   55667888888888765544443  345789999999999998644 6789999999999999983 3222


Q ss_pred             EE--eecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe-EEEEeeCCCeEEE
Q 024676           97 HS--FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT-ILSSCTDSGGVRL  172 (264)
Q Consensus        97 ~~--~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~d~~v~i  172 (264)
                      ..  -.|...|.++.-+| ...++++|++|..|++||.+....+. ......|.|+-+.+.|.... +++.|.. +..+|
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-~~~~v~GGVWRi~~~p~~~~~lL~~CMh-~G~ki  280 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-FKAKVGGGVWRIKHHPEIFHRLLAACMH-NGAKI  280 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-ccCccccceEEEEecchhhhHHHHHHHh-cCceE
Confidence            22  23677788887776 57899999999999999998543322 22234578999988876554 4556666 56788


Q ss_pred             EECCCC
Q 024676          173 WDARSG  178 (264)
Q Consensus       173 wd~~~~  178 (264)
                      -+.+.+
T Consensus       281 ~~~~~~  286 (339)
T KOG0280|consen  281 LDSSDK  286 (339)
T ss_pred             EEeccc
Confidence            777654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=6.3e-09  Score=90.99  Aligned_cols=252  Identities=15%  Similarity=0.197  Sum_probs=163.1

Q ss_pred             eecceEeeccCC-CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeeeCCcCCEEEEEECCCC-cEEEEec
Q 024676            6 VAVPLVCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANA-LFSASGS   80 (264)
Q Consensus         6 ~~~~~~~~~h~~-~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s   80 (264)
                      +.+|..++.-+. .|..+.|+|...--.++++.+.-++ ++|++..-   ..-..+.||+..|..+-|.+.. ..+++++
T Consensus        56 ~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs  134 (1081)
T KOG0309|consen   56 FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS  134 (1081)
T ss_pred             CCCceeeeccCcchhcceecccCCCCceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc
Confidence            455655553232 5677999987655567777776655 47876432   2234567999999999999865 5679999


Q ss_pred             CCCeEEEEeCCCCc-EEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           81 ADFTAKLWDALTGD-EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        81 ~D~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      .|..|..||+.+.. +...+. -...-..|.|+.-...+++.+-.+.+++||++.+..+...+..+...+..++++---.
T Consensus       135 vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~  214 (1081)
T KOG0309|consen  135 VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY  214 (1081)
T ss_pred             ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh
Confidence            99999999998754 333322 2233456788876656666777888999999988877777766777777777764444


Q ss_pred             eEEEEeeCCCeEEEEECCCCc--eeEEecCCCCEEEEEEcCCC--cEEEEeCC-CcE---------EEEECCC-ceeeeE
Q 024676          159 TILSSCTDSGGVRLWDARSGK--IVQTLETKSPVTSAEVSRDG--RYITTADG-SSV---------KFWDANH-FGLVKG  223 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~--~~l~~~~~-~~i---------~iwd~~~-~~~~~~  223 (264)
                      ..+.+++.|++|+.||.++-.  ..+.+....++-.-.+.|=|  ..+.-..+ ..+         ..|+..+ ...+++
T Consensus       215 s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~  294 (1081)
T KOG0309|consen  215 SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT  294 (1081)
T ss_pred             hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee
Confidence            467778888999999987643  33344455566555555533  33322222 122         2344433 356777


Q ss_pred             EecCCCCc-eeeE--------cCC-CCCEEEEecCCCeEEEEEcC
Q 024676          224 YNMPCNTE-SASL--------EPK-LGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       224 ~~~~~~~~-~~~~--------~~~-~~~~~~~gs~d~~v~vwd~~  258 (264)
                      |..+.... .+.+        ..+ -.-.|+|=|.|..+|+|.+.
T Consensus       295 F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  295 FVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             ecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            76654321 1111        110 13479999999999999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.06  E-value=4.7e-09  Score=85.59  Aligned_cols=155  Identities=17%  Similarity=0.251  Sum_probs=100.5

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--ccCCCCeEEEEEecCCCeEEE--EeeCCCeEEEEECCCCceeE
Q 024676          107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILS--SCTDSGGVRLWDARSGKIVQ  182 (264)
Q Consensus       107 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~--~~~~d~~v~iwd~~~~~~~~  182 (264)
                      .+..+|.+++++.+..++.+.+++.+.........  ......-+.+.+...+...++  ..++...+.+|....+.+..
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence            34557777777777666665566654332111111  111112233334444444333  33444567777777677766


Q ss_pred             EecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEec-CCCCc-eeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          183 TLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNM-PCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       183 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      .+.+-+.+..++++||++++.+++ |..||+-....-..+.+|.. +.... .++..+  ++.|++||.|+++|+||..+
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence            677778899999999999988876 78999988777777888876 33333 344443  56799999999999999999


Q ss_pred             ceee
Q 024676          260 GEQI  263 (264)
Q Consensus       260 g~~i  263 (264)
                      |+.+
T Consensus       225 gk~L  228 (390)
T KOG3914|consen  225 GKLL  228 (390)
T ss_pred             CCcc
Confidence            9864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.06  E-value=5.3e-10  Score=62.57  Aligned_cols=39  Identities=38%  Similarity=0.660  Sum_probs=36.6

Q ss_pred             CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        51 ~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ++++++|.+|+++|.+++|+|++.+++|++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.04  E-value=1.8e-06  Score=72.87  Aligned_cols=224  Identities=13%  Similarity=0.123  Sum_probs=139.2

Q ss_pred             EEEEeCC----CCcEEEeC--CCCceE--EeeeCCcCCEEEEEECCCCcEEEEecC----CCeEEEEeCCCC--c--EEE
Q 024676           34 LVSASKD----SSPMLRNG--ETGDWI--GTFEGHKGAVWSCCLDANALFSASGSA----DFTAKLWDALTG--D--EKH   97 (264)
Q Consensus        34 l~t~s~d----~~v~i~~~--~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~----D~~v~iwd~~~~--~--~~~   97 (264)
                      ++.|+..    +.|.++..  +++++.  ..+..- ..-..+++++++.+|.+...    ++.|..|++...  .  .+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~-~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG-ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES-SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC-CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4455555    56777655  556542  333222 22345788999998876654    578988887654  2  222


Q ss_pred             Eee-cCCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeE---e-----c-----cCCCCeEEEEEecCCCeEEE
Q 024676           98 SFE-HKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE---V-----G-----NSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        98 ~~~-~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~---~-----~-----~~~~~i~~~~~~~~~~~~~~  162 (264)
                      ... .......++++|++++|+++.. ++.+.++++.........   .     +     .......++.+.|++..+++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            233 3445667899999999999875 799999999763221111   1     0     12245678888998888887


Q ss_pred             EeeCCCeEEEEECCCCc--ee--E--EecCCCCEEEEEEcCCCcEEE-EeC-CCcEEEEECC--Cc--eeeeEEec-CC-
Q 024676          163 SCTDSGGVRLWDARSGK--IV--Q--TLETKSPVTSAEVSRDGRYIT-TAD-GSSVKFWDAN--HF--GLVKGYNM-PC-  228 (264)
Q Consensus       163 ~~~~d~~v~iwd~~~~~--~~--~--~~~~~~~v~~~~~s~~~~~l~-~~~-~~~i~iwd~~--~~--~~~~~~~~-~~-  228 (264)
                      +.-....|.+|++....  ..  .  .+.......-+.|+|+++++- ..+ ++.|.++++.  ++  +.+..... +. 
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence            76666799999997654  21  2  234456688899999998753 333 6789998887  33  33333332 11 


Q ss_pred             -----CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       229 -----~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                           ....+.++|+...++++......|-+|+++
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence                 233456777544455666678889999983

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.02  E-value=2.5e-08  Score=80.02  Aligned_cols=161  Identities=15%  Similarity=0.295  Sum_probs=117.0

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC----CCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG----ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~----~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      +--..++.++.|.+   .-..|+.|-..|++.-+..    ++....+....|.+.|..+-|+.....+++.+.|+.+. |
T Consensus        65 ~~mP~~~~~~~y~~---e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~  140 (404)
T KOG1409|consen   65 HYMPSPCSAMEYVS---ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-W  140 (404)
T ss_pred             hhCCCCceEeeeec---cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-E
Confidence            34456788899986   5568889988888877644    33445667778999999999998888889988886543 4


Q ss_pred             eC-CCCc-----------------------------------------EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCc
Q 024676           89 DA-LTGD-----------------------------------------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKI  125 (264)
Q Consensus        89 d~-~~~~-----------------------------------------~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~  125 (264)
                      -. +.+.                                         .+.++ .|..++.+++|.|...+|++|..|..
T Consensus       141 hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~  220 (404)
T KOG1409|consen  141 HCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS  220 (404)
T ss_pred             EeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence            21 1110                                         00111 26678999999999999999999999


Q ss_pred             EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~  178 (264)
                      +-+||+........+...|...+..+.+.+- -..+.++..||.|-+||....
T Consensus       221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~~-t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQH-TRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eEEEeccCCcceeeeeccchhhhhhhhhhhh-heeeeeccCCCeEEEEeccce
Confidence            9999997655555555566777777665543 335677888999999998743

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.00  E-value=1.8e-06  Score=72.01  Aligned_cols=212  Identities=14%  Similarity=0.161  Sum_probs=126.4

Q ss_pred             CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEe-c---------CCCeEEEEeCCCCcEEEEeecCC-------
Q 024676           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-S---------ADFTAKLWDALTGDEKHSFEHKH-------  103 (264)
Q Consensus        41 ~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~-s---------~D~~v~iwd~~~~~~~~~~~~~~-------  103 (264)
                      +.+.+.|..+++.+.++..=..+-. + ++||++.++.+ +         ++..|.+||..+.+....+....       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            7899999999999888863222222 4 89999887554 4         57899999999999888776322       


Q ss_pred             -eEEEEEECCCCCEEEEee-C-CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCc
Q 024676          104 -IVRACAFSEDTHLLLTGG-F-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGK  179 (264)
Q Consensus       104 -~v~~~~~~~~~~~l~s~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~-~~~  179 (264)
                       .....+++|++++|+... . +..+.+.|+.+++...+.. ... ....+.. + +...++-|.+ |......+. +|+
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~-vp~-~~~vy~t-~-e~~~~~~~~D-g~~~~v~~d~~g~  179 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD-VPD-CYHIFPT-A-NDTFFMHCRD-GSLAKVGYGTKGN  179 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe-CCC-CcEEEEe-c-CCccEEEeec-CceEEEEecCCCc
Confidence             233778999999999765 3 6889999998766443222 211 1111111 1 1222333333 444333332 222


Q ss_pred             ee-EE---ecC------CCCEEEEEEcC-CCcEEEEeCCCcEEEEECCC-----ceeeeEEecC--------CCCceeeE
Q 024676          180 IV-QT---LET------KSPVTSAEVSR-DGRYITTADGSSVKFWDANH-----FGLVKGYNMP--------CNTESASL  235 (264)
Q Consensus       180 ~~-~~---~~~------~~~v~~~~~s~-~~~~l~~~~~~~i~iwd~~~-----~~~~~~~~~~--------~~~~~~~~  235 (264)
                      .. ..   +..      ..|    .+++ +|+++-.+..+.|.+.|+..     ...+..+...        .....+++
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~  255 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY  255 (352)
T ss_pred             eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence            11 11   111      122    3355 78776555458999999543     3333333221        11223778


Q ss_pred             cCCCCCEEEEec---------CCCeEEEEEcCcceee
Q 024676          236 EPKLGNIFIAGG---------EDMWVHVFDFHTGEQI  263 (264)
Q Consensus       236 ~~~~~~~~~~gs---------~d~~v~vwd~~~g~~i  263 (264)
                      +++.+++++...         ..+.|-++|+.+++.+
T Consensus       256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi  292 (352)
T TIGR02658       256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL  292 (352)
T ss_pred             cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence            877667776442         2257999999998865

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.00  E-value=6.7e-07  Score=85.30  Aligned_cols=197  Identities=14%  Similarity=0.147  Sum_probs=125.1

Q ss_pred             eeeeEeccCCCCCeEEEEEe-CCCCcEEEeCCCCceEEeeeC--C---------------cCCEEEEEECC-CCcEEEEe
Q 024676           19 VVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGTFEG--H---------------KGAVWSCCLDA-NALFSASG   79 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s-~d~~v~i~~~~~~~~~~~~~~--H---------------~~~V~~v~~~~-~~~~l~s~   79 (264)
                      -.+|++.+   +++.|..+. ..+.|+++|..++. +.++.+  .               -..-+.+++++ ++...++.
T Consensus       626 P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        626 PQGLAYNA---KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             CcEEEEeC---CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            35677775   565554444 45678888887654 333321  0               01225789998 56667888


Q ss_pred             cCCCeEEEEeCCCCcEEEEee---------------cCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCCCCCCCCe----
Q 024676           80 SADFTAKLWDALTGDEKHSFE---------------HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPR----  139 (264)
Q Consensus        80 s~D~~v~iwd~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~----  139 (264)
                      +.++.|++||..++.......               .-.....++++|+++.|+ +-+.++.|++||++++.....    
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence            889999999987765322110               011245789999988554 556679999999876432100    


Q ss_pred             --------EeccC--------CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC--------------CCC
Q 024676          140 --------EVGNS--------SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------------KSP  189 (264)
Q Consensus       140 --------~~~~~--------~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--------------~~~  189 (264)
                              ..+..        -.....+++.+++ .++++...++.|++||..++........              -..
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~  860 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE  860 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence                    00000        0123466776655 4677777789999999998875432211              124


Q ss_pred             EEEEEEcCCCcEEEEe-CCCcEEEEECCCcee
Q 024676          190 VTSAEVSRDGRYITTA-DGSSVKFWDANHFGL  220 (264)
Q Consensus       190 v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~  220 (264)
                      ...++++++|+++++. .++.|++||+.+.+.
T Consensus       861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            6788999999876664 468999999988765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.97  E-value=1.8e-08  Score=78.04  Aligned_cols=147  Identities=16%  Similarity=0.132  Sum_probs=94.3

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCc-eEEeee-CCcCCEEEEEECCCCcEEEEecCC-----CeEEEEeCCCCcEEE-Eeec
Q 024676           30 DGFFLVSASKDSSPMLRNGETGD-WIGTFE-GHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGDEKH-SFEH  101 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~-~~~~  101 (264)
                      .++-++++..|+.+-+++.+... ....+. -|.+.- +.+.-..+.++.++..-     +..++|++....... ....
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~  178 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA  178 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeecccccccccccccc
Confidence            35678999999999999876521 111111 122111 11222234444433211     123344443322111 1112


Q ss_pred             CCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676          102 KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (264)
Q Consensus       102 ~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~  177 (264)
                      -..|.+++-+| +.++++.|+.||.+.+||.+....+......|+.+++.+-|.|.++..+.+|++||.+--||..+
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            23488999999 55667778889999999998876666677789999999999998888888999999999999876

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=2.7e-09  Score=85.56  Aligned_cols=161  Identities=17%  Similarity=0.254  Sum_probs=114.7

Q ss_pred             eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC-----cEE
Q 024676           22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-----DEK   96 (264)
Q Consensus        22 ~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~-----~~~   96 (264)
                      ++|+ +...|.+ ++.+.+..+-+-++++|-. +.|. -++.|.++.|...+.++..|.+.|.|-..|++.+     .+.
T Consensus       217 CawS-lni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  217 CAWS-LNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhh-hccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            3555 3344555 5666677788888888742 3344 5678999999988889999999999999998754     456


Q ss_pred             EEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCC--CeEeccCCCCeEEEEEe----cCCCeEEEEeeCCCe
Q 024676           97 HSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWL----HSDQTILSSCTDSGG  169 (264)
Q Consensus        97 ~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~d~~  169 (264)
                      ..+-|...|+++..-. ++++|++.+.+++|++||++..+..  .++.   ++.++..++.    ++.+-+++++++|-.
T Consensus       293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY---eGHvN~~a~l~~~v~~eeg~I~s~GdDcy  369 (425)
T KOG2695|consen  293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY---EGHVNLSAYLPAHVKEEEGSIFSVGDDCY  369 (425)
T ss_pred             EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeee---ecccccccccccccccccceEEEccCeeE
Confidence            6677999999887766 7889999999999999999754431  1222   1222222222    233334555778899


Q ss_pred             EEEEECCCCceeEEecCCCC
Q 024676          170 VRLWDARSGKIVQTLETKSP  189 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~~~  189 (264)
                      .|||.++.|..+.++....+
T Consensus       370 tRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  370 TRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             EEEEecccCceeeccCCCCc
Confidence            99999999998887765443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=4.2e-09  Score=84.51  Aligned_cols=159  Identities=23%  Similarity=0.354  Sum_probs=112.0

Q ss_pred             EEEEECCC--CcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC----CCCC
Q 024676           65 WSCCLDAN--ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP----DAPP  138 (264)
Q Consensus        65 ~~v~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~----~~~~  138 (264)
                      +.++|+-+  +.+ ++.+-+..|-+-|++++.. ..+.....|.++.|...++++..|+..|.|..+|++..    ....
T Consensus       215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhhhhhccceee-ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            34566532  333 5566678888999988854 34445667888999998999999999999999999865    2222


Q ss_pred             eEeccCCCCeEEEEEec-CCCeEEEEeeCCCeEEEEECCCCce---eEEecCCC----CEEEEEEcCC-CcEEEEeCCCc
Q 024676          139 REVGNSSGSIRTVAWLH-SDQTILSSCTDSGGVRLWDARSGKI---VQTLETKS----PVTSAEVSRD-GRYITTADGSS  209 (264)
Q Consensus       139 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~~----~v~~~~~s~~-~~~l~~~~~~~  209 (264)
                      ..+ -|...++++.... +++.++++.. +|+|++||+|.-++   +.+++++.    ++. +-+.+. |..+++++|..
T Consensus       293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M-~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~-~~v~~eeg~I~s~GdDcy  369 (425)
T KOG2695|consen  293 QRL-YHDSSVTSLQILQFSQQKLMASDM-TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLP-AHVKEEEGSIFSVGDDCY  369 (425)
T ss_pred             EEE-EcCcchhhhhhhccccceEeeccC-cCceeEeeehhhhcccceeeeecccccccccc-cccccccceEEEccCeeE
Confidence            233 3567788887776 5666666654 59999999998777   66666542    121 223344 34456677889


Q ss_pred             EEEEECCCceeeeEEecCC
Q 024676          210 VKFWDANHFGLVKGYNMPC  228 (264)
Q Consensus       210 i~iwd~~~~~~~~~~~~~~  228 (264)
                      .|||.++.+..+.+.+.+.
T Consensus       370 tRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  370 TRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             EEEEecccCceeeccCCCC
Confidence            9999999998888877654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.90  E-value=1.8e-07  Score=75.37  Aligned_cols=199  Identities=16%  Similarity=0.204  Sum_probs=129.2

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-----------------------------------eEEee-eC
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----------------------------------WIGTF-EG   59 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-----------------------------------~~~~~-~~   59 (264)
                      .+.|+.|+|.+.. ++..++....|+++++|.+....                                   +.+.+ .+
T Consensus        84 eEKinkIrw~~~~-n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa  162 (433)
T KOG1354|consen   84 EEKINKIRWLDDG-NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA  162 (433)
T ss_pred             hhhhhhceecCCC-CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence            4568899999754 44566778899999999653210                                   01222 35


Q ss_pred             CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE---EEEeec------CCeEEEEEECCCC-CEEEEeeCCCcEEEe
Q 024676           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE---KHSFEH------KHIVRACAFSEDT-HLLLTGGFEKILRIF  129 (264)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~------~~~v~~~~~~~~~-~~l~s~~~d~~i~~~  129 (264)
                      |..-|.++.+..|...++|+ +|-.|.+|+++--..   +..+..      ..-|++..|||.. ..++-.+..|+|++-
T Consensus       163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            88889999999999888764 588899999764322   222221      2247788899954 556667778999999


Q ss_pred             eCCCCCC-----C-CeE---------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCceeEEecCC------
Q 024676          130 DLNRPDA-----P-PRE---------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKIVQTLETK------  187 (264)
Q Consensus       130 d~~~~~~-----~-~~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~~~~~~~~------  187 (264)
                      |++....     . ...         +..--.+|..+.|+++|.++++- .. -+|++||+. ..+++.+++.+      
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dy-ltvk~wD~nme~~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DY-LTVKLWDLNMEAKPVETYPVHEYLRSK  319 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-cc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence            9973210     0 000         00112457778888887766643 33 699999994 34555554432      


Q ss_pred             -------C---CEEEEEEcCCCcEEEEeC-CCcEEEEECCCc
Q 024676          188 -------S---PVTSAEVSRDGRYITTAD-GSSVKFWDANHF  218 (264)
Q Consensus       188 -------~---~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~  218 (264)
                             .   .-..++|+.++.++.+|+ ....+++++..+
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                   1   234577888888877665 678899986443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=1.6e-05  Score=63.73  Aligned_cols=216  Identities=13%  Similarity=0.134  Sum_probs=137.7

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEEC-CCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEKHSF   99 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~   99 (264)
                      ++.|.+  .+|.++++--..+.|..|+..+++.. .+....  ...+++. +++.++++. .++ +.++|..+++.....
T Consensus         4 gp~~d~--~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~-~~~-~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDP--RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVAD-SGG-IAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEET--TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEE-TTC-EEEEETTTTEEEEEE
T ss_pred             ceEEEC--CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEE-cCc-eEEEecCCCcEEEEe
Confidence            356664  36777778778888999999887643 222222  5566777 677666654 344 455598888644433


Q ss_pred             ec------CCeEEEEEECCCCCEEEEeeCC--------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676          100 EH------KHIVRACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus       100 ~~------~~~v~~~~~~~~~~~l~s~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      ..      ....+.++++|++++.++....        +.+..++.. ++  ...........+.++|++++..++++-+
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeeccc
Confidence            32      2357899999999977775543        345556654 22  2222222345678999998888888878


Q ss_pred             CCCeEEEEECCCCce-------eEEecCCC-CEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC-CCCceeeE
Q 024676          166 DSGGVRLWDARSGKI-------VQTLETKS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASL  235 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~-------~~~~~~~~-~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~  235 (264)
                      ..+.|..+|+.....       ...+.... ..-.+++..+|++.++. ..+.|.++|.+ ++.+..+..+ ..+.+.+|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            778999999853221       11222222 37789999999877664 46899999987 8888888887 45666777


Q ss_pred             c-CCCCCEEEEec
Q 024676          236 E-PKLGNIFIAGG  247 (264)
Q Consensus       236 ~-~~~~~~~~~gs  247 (264)
                      . ++.+.+++|.+
T Consensus       233 gg~~~~~L~vTta  245 (246)
T PF08450_consen  233 GGPDGKTLYVTTA  245 (246)
T ss_dssp             ESTTSSEEEEEEB
T ss_pred             ECCCCCEEEEEeC
Confidence            4 44456666643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=4.1e-06  Score=72.31  Aligned_cols=190  Identities=13%  Similarity=0.069  Sum_probs=114.5

Q ss_pred             CEEEEEECCCCcE-EEEec---CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEE-eeCC--CcEEEeeCCCCC
Q 024676           63 AVWSCCLDANALF-SASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFE--KILRIFDLNRPD  135 (264)
Q Consensus        63 ~V~~v~~~~~~~~-l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d--~~i~~~d~~~~~  135 (264)
                      .+..-.|+||++. ++..+   .+..|.++|+.+++..........+....|+|+++.++. .+.+  ..|.++|+.+++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            6778899999974 44322   245788889988876665555555666789999976654 3333  457777876654


Q ss_pred             CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-C-C----
Q 024676          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-G----  207 (264)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~----  207 (264)
                      .  ..+....+......|+|++..++.+....+  .|.+.|+.+++..+.......  ...|||+|++++.. . .    
T Consensus       269 ~--~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        269 L--TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             E--EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence            2  333233332334579998888776654433  588889988876443222111  24899999987543 2 1    


Q ss_pred             ----CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEec-CCC--eEEEEEcC
Q 024676          208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDM--WVHVFDFH  258 (264)
Q Consensus       208 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~--~v~vwd~~  258 (264)
                          ..|.+.|+..++. +.+..........|.|+ |+.++..+ ..+  .+.+.+++
T Consensus       345 ~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPD-G~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        345 GKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSD-GGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCC-CCEEEEEEccCCcEEEEEEecC
Confidence                2577788877653 23322222334667775 66544332 222  35555654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=5.6e-06  Score=71.52  Aligned_cols=191  Identities=15%  Similarity=0.010  Sum_probs=114.4

Q ss_pred             CeeeeEeccCCCCCeE-EEEEeCC---CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCC--CeEEEEeC
Q 024676           18 PVVDLFYSPITPDGFF-LVSASKD---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD--FTAKLWDA   90 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~-l~t~s~d---~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D--~~v~iwd~   90 (264)
                      ++..-.|+|   ||+. ++..+.+   ..+.++|+.+++...-.. ..+.+....|+||++.++ +.+.+  ..+.++|+
T Consensus       189 ~~~~p~wSp---DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWAN---KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECC---CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            555667775   8874 6655554   346667888886543322 445566678999997654 44444  45666687


Q ss_pred             CCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      .++.......+......-.|+|+++.++-.+. .+  .|.+.|+.+++..  .+... +.. ...|+|++..++.+....
T Consensus       265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~-g~~-~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--QVVFH-GKN-NSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--eCccC-CCc-CceECCCCCEEEEEEcCC
Confidence            77764443333322334579999987776653 33  4667777765431  22111 111 247899888877665543


Q ss_pred             --------CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC--CC--cEEEEECCC
Q 024676          168 --------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANH  217 (264)
Q Consensus       168 --------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~--~i~iwd~~~  217 (264)
                              ..|.+.|+.+++... +..........|+|||+.++...  ++  .+.+.++..
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                    368888998887533 32222333578999998765432  22  355666644

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.2e-07  Score=83.91  Aligned_cols=181  Identities=17%  Similarity=0.249  Sum_probs=129.5

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      .+.|++++     +.+|+-|+.+|.+.+.+.... . .+.-.|+..      ..+|.+++|||.||+|.|--+.+.+...
T Consensus        41 ~is~~av~-----~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   41 AISCCAVH-----DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             HHHHHHhh-----cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            45566665     468999999999999876533 2 333345444      5679999999999999999998888888


Q ss_pred             EeecCCeEEEEEECCC-----CCEEEEeeCCCcEEEeeCCC-CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           98 SFEHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        98 ~~~~~~~v~~~~~~~~-----~~~l~s~~~d~~i~~~d~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      .+....++..++++|+     .+.+++|+.-| +-++.-+= +.........-.|+|.++.|.   +.+++-+.+ -.|+
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand-~Gv~  182 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWAND-DGVK  182 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecC-CCcE
Confidence            8888889999999997     67889998887 66665221 111112233457899999996   456777666 5699


Q ss_pred             EEECCCCceeEEecCCC-------CEEEEEEcCCCcEEEEeCCCcEEEEECCC
Q 024676          172 LWDARSGKIVQTLETKS-------PVTSAEVSRDGRYITTADGSSVKFWDANH  217 (264)
Q Consensus       172 iwd~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~~~i~iwd~~~  217 (264)
                      +||..+++.+-.++...       -...+.|.++.+ ++.|.+.+|+|..++.
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIKK  234 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence            99999988776554321       134567776654 4566777898888873

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=4.3e-08  Score=85.96  Aligned_cols=207  Identities=15%  Similarity=0.188  Sum_probs=132.1

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      -.+++||++.|..+.|+|..||  .|++++.|..+..||.++-. .+..+..-...-..|+|+...-.+...+....|++
T Consensus       107 ef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v  184 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV  184 (1081)
T ss_pred             EEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence            3567999999999999998886  89999999999999998754 44444443334456889876655555666778999


Q ss_pred             EeCCCCc-EEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           88 WDALTGD-EKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        88 wd~~~~~-~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ||...+. ++..++ |...|+.+.|.. -...+.+++.|++++.||-.+........-..+.+++--.+.|-++.+++--
T Consensus       185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp  264 (1081)
T KOG0309|consen  185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP  264 (1081)
T ss_pred             EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence            9987764 444443 556677777655 3356788999999999998654333332223445666666666544332211


Q ss_pred             e-CCCeEEEEE---------CCC-CceeEEecCCCC-EEEEEE--------cCC---CcEEEEeCCCcEEEEECCC
Q 024676          165 T-DSGGVRLWD---------ARS-GKIVQTLETKSP-VTSAEV--------SRD---GRYITTADGSSVKFWDANH  217 (264)
Q Consensus       165 ~-~d~~v~iwd---------~~~-~~~~~~~~~~~~-v~~~~~--------s~~---~~~l~~~~~~~i~iwd~~~  217 (264)
                      + .+..+.+++         ..+ .++++.+.++.. |....|        ..|   -++++=+.|.++++|-+..
T Consensus       265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            1 112444443         222 346677765532 222222        222   2345557789999998853

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=2.4e-07  Score=81.21  Aligned_cols=212  Identities=14%  Similarity=0.168  Sum_probs=141.2

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      +.||.+.|.-+-|+.   ..+.|-|...+|-|.+|-+-+|.+...+-  ..+..|.+++|..||..++-.-.||.|.+=.
T Consensus        67 LeGH~~sV~vvTWNe---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNE---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hccCcceEEEEEecc---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            379999999999995   66788899999999999998888765543  3567889999999999998888898886644


Q ss_pred             CCCCcEEEEeec-CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC---Ce-------EeccCCCCeEEEEEe----
Q 024676           90 ALTGDEKHSFEH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PR-------EVGNSSGSIRTVAWL----  154 (264)
Q Consensus        90 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~-------~~~~~~~~i~~~~~~----  154 (264)
                      +... .+...+. ......+.|+++.+.++.+-..+.+.+||-......   ..       .+......+..+.|+    
T Consensus       144 vdGN-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  144 VDGN-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             eccc-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            4332 2222111 112346889999998888888899999986432110   00       011112234555554    


Q ss_pred             ---cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCC---------CcEEEEECCCceee
Q 024676          155 ---HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADG---------SSVKFWDANHFGLV  221 (264)
Q Consensus       155 ---~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~---------~~i~iwd~~~~~~~  221 (264)
                         +++...++.|.+.|.+.|-..+....-..+...-.+..+.|+++|.+++. +.+         +.|++|.. -++.+
T Consensus       223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~  301 (1189)
T KOG2041|consen  223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIV  301 (1189)
T ss_pred             ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhhe
Confidence               35667888899889888865544332222333456788999999998764 321         23555543 34556


Q ss_pred             eEEecCC
Q 024676          222 KGYNMPC  228 (264)
Q Consensus       222 ~~~~~~~  228 (264)
                      .+++.+.
T Consensus       302 gtlkvpg  308 (1189)
T KOG2041|consen  302 GTLKVPG  308 (1189)
T ss_pred             EEEecCC
Confidence            6666643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.83  E-value=1.3e-06  Score=73.27  Aligned_cols=170  Identities=19%  Similarity=0.234  Sum_probs=126.3

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC-eEEEEeCCCCcEEEEeecCCeEEE
Q 024676           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-TAKLWDALTGDEKHSFEHKHIVRA  107 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~v~~  107 (264)
                      .+|.+++..|. |.+.+.+...+-.++  -+|.+.|+-..+..+..-++-|-.|| .+-|+|..+++....-+.-..|..
T Consensus       330 ~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~a  406 (668)
T COG4946         330 VNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEA  406 (668)
T ss_pred             CCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEE
Confidence            36888888876 455565555443321  25788899999988888888899999 999999999987777666678999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE---eeCCCeEEEEECCCCceeEEe
Q 024676          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS---CTDSGGVRLWDARSGKIVQTL  184 (264)
Q Consensus       108 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~d~~v~iwd~~~~~~~~~~  184 (264)
                      +..+|+++.++.+-....+-+.|++++...... ....+-|..++|.|+..++.-+   +-..+.|+++|+.+++.....
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            999999999998888888999999887643222 2356788999999887765443   223357999999999876654


Q ss_pred             cCCCCEEEEEEcCCCcEE
Q 024676          185 ETKSPVTSAEVSRDGRYI  202 (264)
Q Consensus       185 ~~~~~v~~~~~s~~~~~l  202 (264)
                      .....=.+-+|.|++++|
T Consensus       486 T~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         486 TPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             CCcccccCcccCCCCcEE
Confidence            443334455788888764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.81  E-value=5.1e-06  Score=69.87  Aligned_cols=119  Identities=12%  Similarity=0.129  Sum_probs=92.2

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCC-CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDS-SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~-~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      +.-+|...|   +|..++.++.-++.|..|| .+-|++..+++. +.+..--+.|.++..+++|++++.+.....+.+.|
T Consensus       354 iqv~~~~~V---rY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid  429 (668)
T COG4946         354 IQVGKKGGV---RYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID  429 (668)
T ss_pred             EEcCCCCce---EEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence            334677664   5555556777889999999 788999988874 45566678899999999999999998888888889


Q ss_pred             CCCCcEEEE-eecCCeEEEEEECCCCCEEEEeeC----CCcEEEeeCCC
Q 024676           90 ALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGF----EKILRIFDLNR  133 (264)
Q Consensus        90 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~----d~~i~~~d~~~  133 (264)
                      +.++..... -.....+....|||+++.++-+--    ...|+++|+..
T Consensus       430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            999875433 234557899999999999987643    35588888764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.80  E-value=1.2e-05  Score=63.54  Aligned_cols=200  Identities=14%  Similarity=0.201  Sum_probs=124.0

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCC--ceEEeeeCCcCC---EEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee---
Q 024676           29 PDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGA---VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---  100 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~--~~~~~~~~H~~~---V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---  100 (264)
                      .+|+.|| .-.|..|.|...++.  ..++...-.+++   =+.++|+||+.+||.+...|+|+++|+...+. ..++   
T Consensus         7 ~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~   84 (282)
T PF15492_consen    7 SDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAM   84 (282)
T ss_pred             CCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCccc
Confidence            4888764 467888888776653  334444333332   37799999999999999999999999876432 2322   


Q ss_pred             -----cCCeEEEEEECCC------CCEEEEeeCCCcEEEeeCCCC----CCCCeE--e-ccCCCCeEEEEEecCCCeEEE
Q 024676          101 -----HKHIVRACAFSED------THLLLTGGFEKILRIFDLNRP----DAPPRE--V-GNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus       101 -----~~~~v~~~~~~~~------~~~l~s~~~d~~i~~~d~~~~----~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~  162 (264)
                           ...+|-.+.|-+.      ...|+.-..+|.++-|-+..+    ......  + ......+.++.+.|....+++
T Consensus        85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV  164 (282)
T PF15492_consen   85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV  164 (282)
T ss_pred             ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence                 2234555555332      234666678888887765221    111111  1 123457888888887776666


Q ss_pred             EeeCCCe----------EEEEECCCCcee--------------------EEe----------cCCCCEEEEEEcCCCcEE
Q 024676          163 SCTDSGG----------VRLWDARSGKIV--------------------QTL----------ETKSPVTSAEVSRDGRYI  202 (264)
Q Consensus       163 ~~~~d~~----------v~iwd~~~~~~~--------------------~~~----------~~~~~v~~~~~s~~~~~l  202 (264)
                      +|.....          +.-|.+-.+.+.                    ..+          .....|..+..||||.+|
T Consensus       165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L  244 (282)
T PF15492_consen  165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL  244 (282)
T ss_pred             eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence            6554332          445533211110                    000          012348889999999998


Q ss_pred             EE-eCCCcEEEEECCCceeeeEEecCCCC
Q 024676          203 TT-ADGSSVKFWDANHFGLVKGYNMPCNT  230 (264)
Q Consensus       203 ~~-~~~~~i~iwd~~~~~~~~~~~~~~~~  230 (264)
                      ++ ..+|.|.+|++......+.+.....+
T Consensus       245 a~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  245 ACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             EEEEcCCeEEEEecCcchhhcccchhhCC
Confidence            77 45899999999988887777655443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.79  E-value=1e-06  Score=70.06  Aligned_cols=186  Identities=19%  Similarity=0.125  Sum_probs=111.3

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecC----Ce
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHK----HI  104 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~----~~  104 (264)
                      ++.++++++.++.+..+|..+|+.+-.+.. .+.+...... .+..++.++.|+.+..+|..+|+.+... ...    ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            455677889999999999999987655443 1111111112 2334444557789999999999988773 321    11


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC-CC--------CeEEEEEecCCCeEEEEeeCCCe-EEEEE
Q 024676          105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SG--------SIRTVAWLHSDQTILSSCTDSGG-VRLWD  174 (264)
Q Consensus       105 v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~--------~i~~~~~~~~~~~~~~~~~~d~~-v~iwd  174 (264)
                      .........+..++.+..++.+..+|+.+++......... ..        .+..-.... ++.++++. .++. +.+ |
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~-~~g~~~~~-d  189 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSS-GDGRVVAV-D  189 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TTEEEEEC-CTSSEEEE-E
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CCEEEEEc-CCCeEEEE-E
Confidence            1111222237778888889999999998887654443321 11        112222233 33555554 4464 666 9


Q ss_pred             CCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceee
Q 024676          175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV  221 (264)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~  221 (264)
                      +++++.+.... ......+....++.+++.+.++.+..||+++++.+
T Consensus       190 ~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  190 LATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             TTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            99999765434 23333323344445555557899999999998764

...

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=6.4e-06  Score=70.38  Aligned_cols=194  Identities=18%  Similarity=0.194  Sum_probs=124.3

Q ss_pred             cCCCeeeeEeccCCCCCeEEEE-----EeCCCCcEEEeCCCCc---eE--EeeeCCcCCEEEEEECCCCc--E-EEEecC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVS-----ASKDSSPMLRNGETGD---WI--GTFEGHKGAVWSCCLDANAL--F-SASGSA   81 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t-----~s~d~~v~i~~~~~~~---~~--~~~~~H~~~V~~v~~~~~~~--~-l~s~s~   81 (264)
                      |...|..+.++|.- .--++|+     .++-..+|||...-..   .+  ++|- ..+.| .+.|.+.+.  + |++.--
T Consensus       164 ~~~~i~~f~lSpgp-~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  164 SVSGITMLSLSPGP-EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eccceeeEEecCCC-CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEee
Confidence            56678888888741 1123433     3555668888664211   11  1221 11222 356665443  2 233333


Q ss_pred             C---------CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEe--eCCCcEEEeeCCCCCCCCeEeccCCCCeEE
Q 024676           82 D---------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG--GFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (264)
Q Consensus        82 D---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~  150 (264)
                      |         .++.+.++.+..+...+....||.++.|+|+++-++.+  -+=.++.+||++. .. ...+  .+++-++
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~-v~df--~egpRN~  316 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KP-VFDF--PEGPRNT  316 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CE-eEeC--CCCCccc
Confidence            3         47777787754555566678899999999999777654  3456788999863 22 1222  3567778


Q ss_pred             EEEecCCCeEEEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-------CCCcEEEEECC
Q 024676          151 VAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-------DGSSVKFWDAN  216 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-------~~~~i~iwd~~  216 (264)
                      +-|+|.+..++++|..+  |.+-|||..+.+++..++... -.-+.|+|||.++.++       -|+.++||+..
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            88888777777766644  789999999988887776643 3456899999987553       25679999974

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.77  E-value=3.2e-06  Score=68.24  Aligned_cols=236  Identities=15%  Similarity=0.090  Sum_probs=146.3

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeC-CCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~-~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .||.+.|++...-|..+   -+.+.|.|.++|+|-- +.++.-..+. .--.++.++.+.++...|+.|=..|++.-+-+
T Consensus        21 eG~~d~vn~~~l~~~e~---gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEE---GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             cCchhhhhhheeccCCC---CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            69999999877776543   5789999999999954 3455433332 11346788899999999999999999988865


Q ss_pred             CCC----cE-EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe---EEE
Q 024676           91 LTG----DE-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT---ILS  162 (264)
Q Consensus        91 ~~~----~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~  162 (264)
                      ..-    .. .....|...|..+.++...+.+++++.|..+..--.+.+.....-..        .++..+.+.   +.-
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--------~~~~t~~~~d~~~~f  169 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF--------ETPASALQFDALYAF  169 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe--------eccCCCCceeeEEEE
Confidence            432    11 22235888999999999999999999998865433333322211110        000001111   111


Q ss_pred             EeeCCCeEEEEECC--CCceeEEecC-CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceee--eEEecCCCCceeeEc
Q 024676          163 SCTDSGGVRLWDAR--SGKIVQTLET-KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLV--KGYNMPCNTESASLE  236 (264)
Q Consensus       163 ~~~~d~~v~iwd~~--~~~~~~~~~~-~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~  236 (264)
                      .+...+.|.+-.+.  ....+..+.. ..++.++.|.|..+.+ ++..|..+-.||+.-+.-+  ..+............
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            22233444443332  3334445543 4679999999987665 4567889999999654322  111112222222222


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCcc
Q 024676          237 PKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      + -...+.++++|+.|-+||++..
T Consensus       250 ~-~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  250 Q-HTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             h-hheeeeeccCCCeEEEEeccce
Confidence            2 3567899999999999998744

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=6.1e-06  Score=70.59  Aligned_cols=231  Identities=18%  Similarity=0.243  Sum_probs=134.3

Q ss_pred             eeeeEeccCCCCCeEEEEEeCC-----------CCcEEEeCCCCceEEeeeC--CcCCEEE-EEECCCCcEEEEecCCCe
Q 024676           19 VVDLFYSPITPDGFFLVSASKD-----------SSPMLRNGETGDWIGTFEG--HKGAVWS-CCLDANALFSASGSADFT   84 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d-----------~~v~i~~~~~~~~~~~~~~--H~~~V~~-v~~~~~~~~l~s~s~D~~   84 (264)
                      |.-+.|+|   ..+||+|=|..           ..++|||+.+|...+.|..  -...++- ..||.|++++|-...| +
T Consensus       252 Vq~idfSP---~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-s  327 (698)
T KOG2314|consen  252 VQFIDFSP---NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-S  327 (698)
T ss_pred             ceeeecCC---ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-e
Confidence            44566665   78899998652           3679999999998887764  2223333 5899999999876664 5


Q ss_pred             EEEEeCCCCcE----------------------EEEe----------------ecCC--------eE--EEEEECCCCCE
Q 024676           85 AKLWDALTGDE----------------------KHSF----------------EHKH--------IV--RACAFSEDTHL  116 (264)
Q Consensus        85 v~iwd~~~~~~----------------------~~~~----------------~~~~--------~v--~~~~~~~~~~~  116 (264)
                      |.|++..+...                      ++.+                +...        .|  ..+.|-.+|.+
T Consensus       328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence            78887643211                      1100                0000        01  13445556666


Q ss_pred             EEEeeC----------CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC--CCeEEEEECCCCc----e
Q 024676          117 LLTGGF----------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGK----I  180 (264)
Q Consensus       117 l~s~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~----~  180 (264)
                      |+.--.          -..+-|+.++....+ .........+...+|-|.+..+.+-.+.  ..++++|-.++..    .
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIp-ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l  486 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL  486 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCC-ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence            553211          111234444433322 2222345567888999887765443332  2468888887421    1


Q ss_pred             eEEecCCCCEEEEEEcCCCcEEEEe----CCCcEEEEECCCceeeeEEec--CCCCceeeEcCCCCCEEEEecC------
Q 024676          181 VQTLETKSPVTSAEVSRDGRYITTA----DGSSVKFWDANHFGLVKGYNM--PCNTESASLEPKLGNIFIAGGE------  248 (264)
Q Consensus       181 ~~~~~~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gs~------  248 (264)
                      +..+. ....+.+.|+|.|++++.+    ..+.+.++|...-.+ +....  +......-+.| .|+|++++++      
T Consensus       487 Vk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~-k~~~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~  563 (698)
T KOG2314|consen  487 VKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL-KDTASPEHFAATEVEWDP-TGRYVVTSSSSWRHKV  563 (698)
T ss_pred             hhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhh-hhccCccccccccceECC-CCCEEEEeeehhhhcc
Confidence            22222 2457889999999997543    357899999864221 11222  22334566777 5999999886      


Q ss_pred             CCeEEEEEc
Q 024676          249 DMWVHVFDF  257 (264)
Q Consensus       249 d~~v~vwd~  257 (264)
                      |.--++|++
T Consensus       564 d~GYri~tf  572 (698)
T KOG2314|consen  564 DNGYRIFTF  572 (698)
T ss_pred             ccceEEEEe
Confidence            444566665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=4.9e-07  Score=79.31  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=110.9

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---------------eEEeeeCCcCCEEEEEECCCCcEEEEec
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------WIGTFEGHKGAVWSCCLDANALFSASGS   80 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---------------~~~~~~~H~~~V~~v~~~~~~~~l~s~s   80 (264)
                      .....|++|+-   ...|++.|+.||.+++-.+.+..               .-++++||++.|.-+.|....+.+.|..
T Consensus        14 nvkL~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   14 NVKLHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CceEEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            34477899995   55699999999999997554321               1257899999999999999999999999


Q ss_pred             CCCeEEEEeCCCCc---EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676           81 ADFTAKLWDALTGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (264)
Q Consensus        81 ~D~~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  157 (264)
                      .+|.|.+|-+..+.   ....-+.++-|.+++|+.+|..+...-.||.+-+=.++..+.-...+.  ......+.|+++.
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDL  168 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccH
Confidence            99999999987763   222234566789999999998888777888776655443211011111  1123457788776


Q ss_pred             CeEEEEeeCCCeEEEEECCC
Q 024676          158 QTILSSCTDSGGVRLWDARS  177 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~  177 (264)
                      ..++. +..+|.+.++|...
T Consensus       169 ~~~Lf-~~ange~hlydnqg  187 (1189)
T KOG2041|consen  169 EQALF-KKANGETHLYDNQG  187 (1189)
T ss_pred             HHHHh-hhcCCcEEEecccc
Confidence            65444 45569999999764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.75  E-value=1e-05  Score=76.20  Aligned_cols=233  Identities=14%  Similarity=0.232  Sum_probs=145.5

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEE----eCCCC--ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE--
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLR----NGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL--   87 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~----~~~~~--~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i--   87 (264)
                      ...|..+.|-+   +...|+.+..+|.|.+.    +....  +.++.+.   ..|.+++|+||+..++-...++++-+  
T Consensus        75 ~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd---~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   75 NDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSVD---SGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEc---CcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            35677888885   67788999999999888    44443  2344444   68999999999998877766776665  


Q ss_pred             --EeCCC---------Cc--EE--------EEe-----------------e--------cCCeEEEEEECCCCCEEEEee
Q 024676           88 --WDALT---------GD--EK--------HSF-----------------E--------HKHIVRACAFSEDTHLLLTGG  121 (264)
Q Consensus        88 --wd~~~---------~~--~~--------~~~-----------------~--------~~~~v~~~~~~~~~~~l~s~~  121 (264)
                        ||.-.         +.  .+        ..|                 +        ....-..++|--||++++..+
T Consensus       149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence              33210         00  00        000                 0        011234578999999998765


Q ss_pred             C------CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee--CCCeEEEEECCCCceeEEec-----CCC
Q 024676          122 F------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGGVRLWDARSGKIVQTLE-----TKS  188 (264)
Q Consensus       122 ~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~~~~~~-----~~~  188 (264)
                      .      -+.+|+|+-+ +... .......+--..++|-|.+..+.++..  +...|-+|. |.|-....+.     ...
T Consensus       229 ~~~~~~~~R~iRVy~Re-G~L~-stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~  305 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSRE-GELQ-STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEE  305 (928)
T ss_pred             EEcCCCceeEEEEECCC-ceEE-eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCc
Confidence            4      3679999965 3322 111123444566899987754443332  123466666 3444333342     235


Q ss_pred             CEEEEEEcCCCcEEEEeCCCcEEEEECCCce--eeeEEecC--CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          189 PVTSAEVSRDGRYITTADGSSVKFWDANHFG--LVKGYNMP--CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       189 ~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      .+..+.|++|+..|+..-...|++|-..+|.  .=+.+.++  .......|++.....|.....++.+..+++
T Consensus       306 ~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  306 KVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             eeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            6899999999999887655569999998864  22223332  223347788877777777777666765553

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.74  E-value=8.7e-06  Score=65.97  Aligned_cols=183  Identities=17%  Similarity=0.225  Sum_probs=121.1

Q ss_pred             eeEeccCCCCCeEEEEEeCC-----CCcEEEeCC-CCceEEeeeCCcCCEEEEEECCCCcEEEEe---------------
Q 024676           21 DLFYSPITPDGFFLVSASKD-----SSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASG---------------   79 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d-----~~v~i~~~~-~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~---------------   79 (264)
                      .-.|+|   ||++|.+.-.|     |.|-|||.. +.+.+.+|..|.=.=+.+.+.||+..|+.+               
T Consensus        55 Hg~fs~---dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL  131 (305)
T PF07433_consen   55 HGVFSP---DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL  131 (305)
T ss_pred             CEEEcC---CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence            345674   99999998554     568899998 557788887765444667789999666554               


Q ss_pred             ---cCCCeEEEEeCCCCcEEEEee-----cCCeEEEEEECCCCCEEEEeeCCCc-------EEEeeCCCCCCCCeE----
Q 024676           80 ---SADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKI-------LRIFDLNRPDAPPRE----  140 (264)
Q Consensus        80 ---s~D~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~-------i~~~d~~~~~~~~~~----  140 (264)
                         .++-++-.-|..+|+.+....     |...++.+++++++..++..-+.+.       +-+++.... .....    
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~  210 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEE  210 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChH
Confidence               122234445666676555432     4557999999999987776654433       223332211 11011    


Q ss_pred             -eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCc
Q 024676          141 -VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS  209 (264)
Q Consensus       141 -~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  209 (264)
                       .....+.+-++++..++..+++++..-+.+-+||..+++.+..... ..+..++..+++ |++++..+.
T Consensus       211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCcc
Confidence             1123578999999988888999999989999999999998765554 356677777777 655544344

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.72  E-value=1.8e-05  Score=68.04  Aligned_cols=225  Identities=14%  Similarity=0.074  Sum_probs=130.4

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEE--
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC--  108 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~--  108 (264)
                      +..++.++.++.+.-+|.++|+.+=..... +.+.+--.-.++ .++.+..++.+.-+|..+|+.+..++...+...+  
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVSDG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEECC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            445677888899988999999754333211 122211111134 4555677899999999999988777543221100  


Q ss_pred             EECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCC-----eEEEEEec--CCCeEEEEeeCCCeEEEEECCCC
Q 024676          109 AFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGS-----IRTVAWLH--SDQTILSSCTDSGGVRLWDARSG  178 (264)
Q Consensus       109 ~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~-----i~~~~~~~--~~~~~~~~~~~d~~v~iwd~~~~  178 (264)
                      .-+|  .+..++.++.++.+..+|..+++....... ...+.     ...+...|  .++.++++ +.++.+..+|.++|
T Consensus       198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~-~~~g~l~ald~~tG  276 (394)
T PRK11138        198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL-AYNGNLVALDLRSG  276 (394)
T ss_pred             CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE-EcCCeEEEEECCCC
Confidence            0122  133566677788888888887766544321 11000     00000011  13445544 45689999999999


Q ss_pred             ceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec-CCC-CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          179 KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PCN-TESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       179 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      +.+........ ...... ++++++...++.+..+|..+++.+=.... ... ..+...   .+..++.++.|+.+++.|
T Consensus       277 ~~~W~~~~~~~-~~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        277 QIVWKREYGSV-NDFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             CEEEeecCCCc-cCcEEE-CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEE
Confidence            98766543322 122222 45566666778899999988765422221 111 111111   245678889999999999


Q ss_pred             cCcceee
Q 024676          257 FHTGEQI  263 (264)
Q Consensus       257 ~~~g~~i  263 (264)
                      .++|+.+
T Consensus       352 ~~tG~~~  358 (394)
T PRK11138        352 REDGRFV  358 (394)
T ss_pred             CCCCCEE
Confidence            9999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.71  E-value=4.7e-08  Score=54.50  Aligned_cols=36  Identities=33%  Similarity=0.516  Sum_probs=32.9

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEe
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN   47 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~   47 (264)
                      ...+.+|+.+|.+|+|+|   ++++|++|+.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence            456789999999999997   789999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=6.9e-09  Score=92.53  Aligned_cols=201  Identities=19%  Similarity=0.252  Sum_probs=136.6

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec-CCC-eE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-ADF-TA   85 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s-~D~-~v   85 (264)
                      .+.+++-|+..-+|++|+-   +.++|+.|+..|.++++++.+|.......+|..+|.-+.-+.||..+.+.+ ... ..
T Consensus      1093 ~w~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cchhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            4556788999999999994   678999999999999999999998889999999999999888887765543 333 56


Q ss_pred             EEEeCCC-CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc---CCCCeEEEEEecCCCeEE
Q 024676           86 KLWDALT-GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---SSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        86 ~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~  161 (264)
                      -+|++.+ +....+|...+   ++.|+.....-+.|+......+||+.+.......+..   ..-+.+...|+|.+..++
T Consensus      1170 aLW~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDK---AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HHhccccccCccccccccc---eeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            7899754 44555554333   3455543333333444466789999876554332211   122335566777655433


Q ss_pred             EEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEE
Q 024676          162 SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  224 (264)
                          .||  -+||.|..+.++.+..-+.-..=.|+|+|.-++.-+    .|||+|+++.++..
T Consensus      1247 ----ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 ----NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             ----eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence                345  469999988887775433222335899987655422    47999998776544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=6.5e-06  Score=70.44  Aligned_cols=228  Identities=20%  Similarity=0.255  Sum_probs=133.0

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC-----------CeEEEEe
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-----------FTAKLWD   89 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-----------~~v~iwd   89 (264)
                      -+.|+|   -|.||+|-..-|. .+|-.++-..++.|. |. .|.-+.|||..++|+|=|..           ..+.|||
T Consensus       215 yv~wSP---~GTYL~t~Hk~GI-~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  215 YVRWSP---KGTYLVTFHKQGI-ALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eEEecC---CceEEEEEeccce-eeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            367775   7999999887775 689777655555554 53 57889999999999986432           6899999


Q ss_pred             CCCCcEEEEeec--C-Ce-EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEec----------
Q 024676           90 ALTGDEKHSFEH--K-HI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH----------  155 (264)
Q Consensus        90 ~~~~~~~~~~~~--~-~~-v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~----------  155 (264)
                      +.+|..++.+..  . .+ -....|+.++++++--.. +.|.+|+..+-... ....-.-..|....|+|          
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ll-d~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLL-DKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeee-cccccCCccccCcccCCCcceEEEEcc
Confidence            999998888764  2 22 235789999998875444 56788875431110 00000001111122222          


Q ss_pred             -------------------------------------CCCeEEEEeeCC---------CeEEEEECCCCc-eeEEecCCC
Q 024676          156 -------------------------------------SDQTILSSCTDS---------GGVRLWDARSGK-IVQTLETKS  188 (264)
Q Consensus       156 -------------------------------------~~~~~~~~~~~d---------~~v~iwd~~~~~-~~~~~~~~~  188 (264)
                                                           ++.++.+-....         ..+.|+.++... ++...+...
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke  446 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE  446 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence                                                 222111100000         012222222111 122233345


Q ss_pred             CEEEEEEcCCCcEEE--EeCC--CcEEEEECCC----ceeeeEEecCCCCceeeEcCCCCCEEEEe---cCCCeEEEEEc
Q 024676          189 PVTSAEVSRDGRYIT--TADG--SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAG---GEDMWVHVFDF  257 (264)
Q Consensus       189 ~v~~~~~s~~~~~l~--~~~~--~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---s~d~~v~vwd~  257 (264)
                      ++...+|-|.|..++  ++..  .++.+|-+++    .++++.+.. ...+...+.|. |++++.+   |..+.+..+|+
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPk-G~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPK-GRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCC-CcEEEEEEecccccceEEEec
Confidence            677888999985443  3332  4789998773    344555554 34556778885 7777654   44688999987


Q ss_pred             C
Q 024676          258 H  258 (264)
Q Consensus       258 ~  258 (264)
                      +
T Consensus       525 ~  525 (698)
T KOG2314|consen  525 D  525 (698)
T ss_pred             c
Confidence            6

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.4e-06  Score=71.66  Aligned_cols=206  Identities=15%  Similarity=0.146  Sum_probs=119.2

Q ss_pred             EeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCC
Q 024676           55 GTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLN  132 (264)
Q Consensus        55 ~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~  132 (264)
                      +.+.+|...|+.++|+|... ++..++.+.+++|.|+++......+.....+++++|+.++ +++++|-..|.|.+||++
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            34456778899999999776 6788999999999999999888888777899999999865 667777789999999998


Q ss_pred             CCCCCCeEecc--CCCCeEEEEEecCCC-----eEEEEeeCCCeEEEEECCC----CceeEEecCCCCEEEEEEcCCCcE
Q 024676          133 RPDAPPREVGN--SSGSIRTVAWLHSDQ-----TILSSCTDSGGVRLWDARS----GKIVQTLETKSPVTSAEVSRDGRY  201 (264)
Q Consensus       133 ~~~~~~~~~~~--~~~~i~~~~~~~~~~-----~~~~~~~~d~~v~iwd~~~----~~~~~~~~~~~~v~~~~~s~~~~~  201 (264)
                      ..+........  ...++..++..+++.     .+++....  .+..|....    .-++..++..+...+.++++-.+.
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh  344 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH  344 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence            76654433321  233555555444331     23332222  244554432    122223333334445555554343


Q ss_pred             E-EEeCC--C--cEE----EEECCCceee----eEE-ecC---CCCceeeEc-CCCCCEEEEecCCCeEEEEEcCccee
Q 024676          202 I-TTADG--S--SVK----FWDANHFGLV----KGY-NMP---CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       202 l-~~~~~--~--~i~----iwd~~~~~~~----~~~-~~~---~~~~~~~~~-~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      + ++-..  +  .++    --|.+.+.++    .++ ..+   -....+.+. ++...++..|.+-+.+.+||..+++.
T Consensus       345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev  423 (463)
T KOG1645|consen  345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV  423 (463)
T ss_pred             EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence            3 22211  0  111    1122333322    111 001   111122222 22344555688889999999988764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.67  E-value=5.4e-06  Score=64.92  Aligned_cols=148  Identities=14%  Similarity=0.036  Sum_probs=103.5

Q ss_pred             EEEEeCCCCcEEEeCCCCceEEeeeCCcCC--EEEEEECCCCcEEEEecCCCeEEEEeCCCC-cEEEE-e--ecCCeEEE
Q 024676           34 LVSASKDSSPMLRNGETGDWIGTFEGHKGA--VWSCCLDANALFSASGSADFTAKLWDALTG-DEKHS-F--EHKHIVRA  107 (264)
Q Consensus        34 l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~--V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~-~--~~~~~v~~  107 (264)
                      +..++.|.++++.+++-+...  +..|-..  +.++++++|++++++.++-..|-+|.+... +.+.. +  ..++.-.+
T Consensus       131 ~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY  208 (344)
T ss_pred             eeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence            456677777777766544322  2224443  788999999999999998888999987653 22211 2  23344567


Q ss_pred             EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe----EeccCCCCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCcee
Q 024676          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR----EVGNSSGSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIV  181 (264)
Q Consensus       108 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~----~~~~~~~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~  181 (264)
                      ..|+..+..++++..|+++.+||++....+..    ...+|+|.+..+.|++.+.  .++.+-.- +.+.+.|+|+++-.
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYVNH  287 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCc-ceEEEEEcccCcee
Confidence            78999999999999999999999986544332    3356889999999986543  34444333 78999999998754


Q ss_pred             EEe
Q 024676          182 QTL  184 (264)
Q Consensus       182 ~~~  184 (264)
                      +.+
T Consensus       288 q~I  290 (344)
T KOG4532|consen  288 QVI  290 (344)
T ss_pred             eEE
Confidence            433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.67  E-value=0.00011  Score=59.89  Aligned_cols=218  Identities=12%  Similarity=0.162  Sum_probs=132.7

Q ss_pred             CCCcEEEeCCC--Cce-EEeeeCCcCCEEEEEECCCCcEEEEecCC---CeEEEEeCCC--CcEEEEe---ecCCeEEEE
Q 024676           40 DSSPMLRNGET--GDW-IGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALT--GDEKHSF---EHKHIVRAC  108 (264)
Q Consensus        40 d~~v~i~~~~~--~~~-~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~v~iwd~~~--~~~~~~~---~~~~~v~~~  108 (264)
                      ++-|.+|++.+  |+. ...+-.+.+...-++|++++++|.++..+   +.|--|.+..  |.....-   ...++-+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            45688887763  332 12233456667789999999998887555   5566665543  4322211   123445889


Q ss_pred             EECCCCCEEEEeeC-CCcEEEeeCCC-CCCCCe-EeccCCCC----------eEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676          109 AFSEDTHLLLTGGF-EKILRIFDLNR-PDAPPR-EVGNSSGS----------IRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus       109 ~~~~~~~~l~s~~~-d~~i~~~d~~~-~~~~~~-~~~~~~~~----------i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      ++++++++++++.. -+.|.++-++. +..... +...|.+.          .....+.|++..+++..-.-..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999999876 48899998854 332211 22223322          5666777777776666555568999999


Q ss_pred             CCCceeE----EecCCCCEEEEEEcCCCcEE--EEeCCCcEEEEECCCc----eeeeEEe-cCC------CCceeeEcCC
Q 024676          176 RSGKIVQ----TLETKSPVTSAEVSRDGRYI--TTADGSSVKFWDANHF----GLVKGYN-MPC------NTESASLEPK  238 (264)
Q Consensus       176 ~~~~~~~----~~~~~~~v~~~~~s~~~~~l--~~~~~~~i~iwd~~~~----~~~~~~~-~~~------~~~~~~~~~~  238 (264)
                      ..|+...    .++......-+.|+|+++++  +.--+++|-+|.....    +.++.+. ++.      ....+..++ 
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-  253 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-  253 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence            9776432    23445567889999999875  3334789999988662    3333332 121      122344555 


Q ss_pred             CCCEEEEec-CCCeEEEEEcC
Q 024676          239 LGNIFIAGG-EDMWVHVFDFH  258 (264)
Q Consensus       239 ~~~~~~~gs-~d~~v~vwd~~  258 (264)
                      +|++|.++- ....|-+|.++
T Consensus       254 dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEc
Confidence            477665532 12356666543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=5.8e-06  Score=73.38  Aligned_cols=234  Identities=13%  Similarity=0.041  Sum_probs=152.7

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC------------CcEEEEecCCCeEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN------------ALFSASGSADFTAK   86 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~------------~~~l~s~s~D~~v~   86 (264)
                      -.++.|+|   .| ++|-|+.. .|.+.|..+.+.++.++-|...|..+.|.|-            ..++|++...|.|.
T Consensus        18 ~~A~Dw~~---~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   18 RNAADWSP---SG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             ccccccCc---cc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            55788885   45 45666554 5678899999999999999999999999762            23567888889999


Q ss_pred             EEeCCCCcEEEEee-cCCeEEEEEECC---CC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEE
Q 024676           87 LWDALTGDEKHSFE-HKHIVRACAFSE---DT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        87 iwd~~~~~~~~~~~-~~~~v~~~~~~~---~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      +||...+..+..++ +.+++..++|-|   ++ ..|++-..-.++-+|+..+|+..+.....+ ....++.+-|-+...+
T Consensus        93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceE
Confidence            99998887766665 556888888866   33 456666667899999998887655443322 2445555555443333


Q ss_pred             EEeeCCCeEEEEECCC-------CceeEEecCC-C-----------------C--------EEEEEEcCCCcE-EEEeCC
Q 024676          162 SSCTDSGGVRLWDARS-------GKIVQTLETK-S-----------------P--------VTSAEVSRDGRY-ITTADG  207 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~-------~~~~~~~~~~-~-----------------~--------v~~~~~s~~~~~-l~~~~~  207 (264)
                      +..+..|.+.+-+.-.       ++.++....+ .                 +        ...++|+|--+. +...-.
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p  251 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP  251 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence            3333447777765421       2322222111 0                 0        112345666543 333446


Q ss_pred             CcEEEEECCCceeeeEEecCCCC---ceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          208 SSVKFWDANHFGLVKGYNMPCNT---ESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       208 ~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      +.+.++|++-..++....++.+.   ......++ .+.+.+..+||.+-+|..+.
T Consensus       252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~-rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR-RDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             cceEEEcchhhceeEEEEeccCCcceeEeccCCC-cceEEEEecCCeEEEEEeec
Confidence            78999999988888777765442   22223332 57889999999999997543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.65  E-value=6e-05  Score=64.03  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=91.5

Q ss_pred             EEEECCCCCEEEEee-----------CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE-EEEeeCCCeEEEEE
Q 024676          107 ACAFSEDTHLLLTGG-----------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI-LSSCTDSGGVRLWD  174 (264)
Q Consensus       107 ~~~~~~~~~~l~s~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~d~~v~iwd  174 (264)
                      .+.|++.+++|+.--           ....+.++++...... .. ....++|..++|.|.+..+ +++|.....+.++|
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-ee-ccccccceeeeecccCCceeEEecccccceeecc
Confidence            466788777766321           1234566666532221 12 1457899999998766554 44556778999999


Q ss_pred             CCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCC---CcEEEEECCCcee-eeEEecCCCCceeeEcCCCCCEEEEec--
Q 024676          175 ARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADG---SSVKFWDANHFGL-VKGYNMPCNTESASLEPKLGNIFIAGG--  247 (264)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~---~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gs--  247 (264)
                      ++.. . ...-....-+.+.|+|.+++++. +-|   +.+.+||...... +..+... +.....|.| +++++-+.-  
T Consensus       305 lr~N-l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wsp-d~qF~~~~~ts  380 (561)
T COG5354         305 LRGN-L-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSP-DGQFYDTDTTS  380 (561)
T ss_pred             cccc-e-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccC-CceEEEecCCC
Confidence            9977 3 33333345667889999998755 333   6799999876544 4355432 222334555 466655542  


Q ss_pred             ----CCCeEEEEEcC
Q 024676          248 ----EDMWVHVFDFH  258 (264)
Q Consensus       248 ----~d~~v~vwd~~  258 (264)
                          .|..+.|||+.
T Consensus       381 ~k~~~Dn~i~l~~v~  395 (561)
T COG5354         381 EKLRVDNSIKLWDVY  395 (561)
T ss_pred             cccccCcceEEEEec
Confidence                38889999974

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.63  E-value=1.7e-05  Score=68.27  Aligned_cols=223  Identities=12%  Similarity=0.023  Sum_probs=131.7

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceE--EeeeCCcC--------CEE-EEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWI--GTFEGHKG--------AVW-SCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~--~~~~~H~~--------~V~-~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~   99 (264)
                      +..+.+++.++.+.-+|..+|+.+  ..+....+        .+. .+..  ++..++.++.++.+.-+|..+|+.+...
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            446777888888888899888754  33332110        000 0111  2445566778999999999999887776


Q ss_pred             ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-C---eEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676          100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-S---IRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~---i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      +....+..-..- .+..++.+..++.+..+|.++++........... .   ...-...  ++.+++ +..++.+..+|.
T Consensus       147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~-~~~~g~v~a~d~  222 (394)
T PRK11138        147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIV-GGDNGRVSAVLM  222 (394)
T ss_pred             cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEE-EcCCCEEEEEEc
Confidence            644433221011 2446667778889999999888766554321100 0   0000111  233444 445689999999


Q ss_pred             CCCceeEEecCCCC--------EEEEEEcC---CCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEE
Q 024676          176 RSGKIVQTLETKSP--------VTSAEVSR---DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI  244 (264)
Q Consensus       176 ~~~~~~~~~~~~~~--------v~~~~~s~---~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (264)
                      ++|+.+...+...+        ...+..+|   ++.+++++.++.+.-+|..+++.+=........ ....   .+..+.
T Consensus       223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~---~~~~vy  298 (394)
T PRK11138        223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN-DFAV---DGGRIY  298 (394)
T ss_pred             cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc-CcEE---ECCEEE
Confidence            99987765432111        11111222   556666667788999999988765333332111 1111   245566


Q ss_pred             EecCCCeEEEEEcCcceee
Q 024676          245 AGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       245 ~gs~d~~v~vwd~~~g~~i  263 (264)
                      .++.|+.++..|.++|+++
T Consensus       299 ~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        299 LVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             EEcCCCeEEEEECCCCcEE
Confidence            7778999999999999764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.54  E-value=1.1e-05  Score=69.69  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=86.5

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEE----EeCCCCcEE----EeCCCCceE--Ee-eeCCcCCEEEEEECCCCc
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVS----ASKDSSPML----RNGETGDWI--GT-FEGHKGAVWSCCLDANAL   74 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t----~s~d~~v~i----~~~~~~~~~--~~-~~~H~~~V~~v~~~~~~~   74 (264)
                      ++..-..+..-.|+ ++.|+-..|  +.+.|    .|.+|.+.+    |+...++..  .. --.....|.+++++|+..
T Consensus       196 lEvL~yirTE~dPl-~~~Fs~~~~--~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~  272 (545)
T PF11768_consen  196 LEVLSYIRTENDPL-DVEFSLNQP--YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED  272 (545)
T ss_pred             EEEEEEEEecCCcE-EEEccCCCC--cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc
Confidence            34444444444554 677774333  23333    244565543    555544322  11 124677899999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC
Q 024676           75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~  135 (264)
                      .++.|+.||+|.+||...+..... ...-..+.++|||++.++++|+..|.+.+||+.-..
T Consensus       273 kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  273 KLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             eEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            999999999999999877644333 344557889999999999999999999999986443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.53  E-value=0.0003  Score=57.22  Aligned_cols=221  Identities=18%  Similarity=0.191  Sum_probs=124.6

Q ss_pred             eEeccCCCCCeEEEEEeCCCC-cEEEeCCCCceEEeeeCCcCCEEE--EEECCCCcEEEEe-----cCCCeEEEEeCC-C
Q 024676           22 LFYSPITPDGFFLVSASKDSS-PMLRNGETGDWIGTFEGHKGAVWS--CCLDANALFSASG-----SADFTAKLWDAL-T   92 (264)
Q Consensus        22 ~~~~~~~~~g~~l~t~s~d~~-v~i~~~~~~~~~~~~~~H~~~V~~--v~~~~~~~~l~s~-----s~D~~v~iwd~~-~   92 (264)
                      ++.+|.  .+..++-+-.-|+ ..++|..+++..+.+....+.-+.  -.|++||.+|++.     ...|.|-|||.. +
T Consensus        10 ~a~~p~--~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen   10 VAAHPT--RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             eeeCCC--CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            444552  4456777777775 456888888776555332222211  4689999998775     445899999998 3


Q ss_pred             CcEEEEee-cCCeEEEEEECCCCCEEEEee------------------CCCcEEEeeCCCCCCCCe-Ee--ccCCCCeEE
Q 024676           93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGG------------------FEKILRIFDLNRPDAPPR-EV--GNSSGSIRT  150 (264)
Q Consensus        93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~------------------~d~~i~~~d~~~~~~~~~-~~--~~~~~~i~~  150 (264)
                      ...+..+. +.-.-.-+.+.|+++.|+.+-                  ++..+-..|..+++...+ .+  ..++-++..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            34444553 111234466888887776541                  111222334444443322 12  124446777


Q ss_pred             EEEecCCCeEEEEeeCCCe-------EEEEECCCCceeEEec--------CCCCEEEEEEcCCCcEEEEeC--CCcEEEE
Q 024676          151 VAWLHSDQTILSSCTDSGG-------VRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITTAD--GSSVKFW  213 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~-------v~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~--~~~i~iw  213 (264)
                      +++.+++ .++......+.       |-+++  .++.+..+.        ....+-++++++++.+++.++  ++.+.+|
T Consensus       168 La~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  168 LAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             EEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            7766543 33333333222       22222  222222221        235789999999998876554  6799999


Q ss_pred             ECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC
Q 024676          214 DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (264)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~  250 (264)
                      |..+++.+.....+..+... ..  .+.++++.+...
T Consensus       245 d~~tg~~~~~~~l~D~cGva-~~--~~~f~~ssG~G~  278 (305)
T PF07433_consen  245 DAATGRLLGSVPLPDACGVA-PT--DDGFLVSSGQGQ  278 (305)
T ss_pred             ECCCCCEeeccccCceeeee-ec--CCceEEeCCCcc
Confidence            99999988777664332222 22  233666666543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3.6e-06  Score=70.26  Aligned_cols=215  Identities=13%  Similarity=0.117  Sum_probs=139.7

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeC-CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC----cEEEEecC
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA----LFSASGSA   81 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~-d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~----~~l~s~s~   81 (264)
                      +..+.++.|...|..++-+   -+|..+.|.+. |+.++++|++.-.++.-++.---+=.+-.+...|    ...++.-.
T Consensus        44 EfVKhFraHL~~I~sl~~S---~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~  120 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVS---YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFK  120 (558)
T ss_pred             eehhhhHHHHHHHHhhhcc---ccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeeccc
Confidence            3444456677777766555   47888888777 9999999998765442222110010111122233    34456677


Q ss_pred             CCeEEEEeCCCCc-EEE--EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC----CC--C----Ce----EeccC
Q 024676           82 DFTAKLWDALTGD-EKH--SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP----DA--P----PR----EVGNS  144 (264)
Q Consensus        82 D~~v~iwd~~~~~-~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~----~~--~----~~----~~~~~  144 (264)
                      ++.+-++|-.... +..  .--|..+|..+.+.|.+..+++....|+|.-|..+..    +.  .    ..    .....
T Consensus       121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~  200 (558)
T KOG0882|consen  121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA  200 (558)
T ss_pred             CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence            7899999965543 222  2238899999999999999998888899999987631    10  0    00    01122


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC----------------------------------CCE
Q 024676          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------------------------------SPV  190 (264)
Q Consensus       145 ~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----------------------------------~~v  190 (264)
                      +....++.++|.+.. +++-..|..|++++.++|+.++.+...                                  .+-
T Consensus       201 Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~  279 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVG  279 (558)
T ss_pred             ccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccc
Confidence            345677888876654 555568899999999998866544210                                  123


Q ss_pred             EEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676          191 TSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       191 ~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  225 (264)
                      ..+.|...|+||.-+.==.|++.++.++++++.+.
T Consensus       280 ~~~~fdes~~flly~t~~gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  280 TNAVFDESGNFLLYGTILGIKVINLDTNTVVRILG  314 (558)
T ss_pred             ceeEEcCCCCEEEeecceeEEEEEeecCeEEEEec
Confidence            45667777888877765578999999988887774

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=9.4e-05  Score=66.61  Aligned_cols=196  Identities=15%  Similarity=0.134  Sum_probs=127.5

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCC-EEEEEECCCCcEEEEecCCC-----eEEEEeCCCC------cEE
Q 024676           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADF-----TAKLWDALTG------DEK   96 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~-V~~v~~~~~~~~l~s~s~D~-----~v~iwd~~~~------~~~   96 (264)
                      +.+-.+|.|+++|.|.+.+-. -+.++.|..|... |..+-...+..+|++-+-|+     .++||+++..      .+.
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~  111 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL  111 (933)
T ss_pred             CCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence            356688999999998776532 3445677777666 54444445556777765554     6999997543      122


Q ss_pred             ---EEee-----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC---CCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           97 ---HSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN---RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        97 ---~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                         +.+.     .+.|+..++++.+-+.++.|-.+|.|..+.-+   ............+.+|+.+.+..++...+-++.
T Consensus       112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T  191 (933)
T KOG2114|consen  112 YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT  191 (933)
T ss_pred             eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence               2222     24568889999999999989899999887532   111122233345678999999877776333333


Q ss_pred             CCCeEEEEECCCCceeEE-ec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec
Q 024676          166 DSGGVRLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~  226 (264)
                      . ..|.+|.+....+... +. +..+.+|..+++...-+.++.+.-+.+||.....+.-+|..
T Consensus       192 t-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~  253 (933)
T KOG2114|consen  192 T-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEV  253 (933)
T ss_pred             c-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecC
Confidence            3 5799999984442322 33 34568888888665434555566899999887666666653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.45  E-value=0.00013  Score=68.99  Aligned_cols=227  Identities=14%  Similarity=0.156  Sum_probs=136.8

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeC---C---CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC---CCeEE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASK---D---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAK   86 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~---d---~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~---D~~v~   86 (264)
                      ...-..|.|.   .||.|+|+.+.   .   +.+|||+-+ |++..+.+.-.+--.+++|.|.|.++|+..+   ...|.
T Consensus       209 dd~~~~ISWR---GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv  284 (928)
T PF04762_consen  209 DDGRVRISWR---GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV  284 (928)
T ss_pred             CCCceEEEEC---CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence            3344578898   59999998875   2   467889866 6654444433333356899999999988754   45777


Q ss_pred             EEeCCCCcEEEEe--e---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC--CeEeccCCCCeEEEEEecCCCe
Q 024676           87 LWDALTGDEKHSF--E---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        87 iwd~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      +|+-+. ..-..|  +   ....|..+.|++++.+|+....|. |.+|-......-  +.........+..+.|.|....
T Consensus       285 FfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  285 FFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             EEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence            887443 222222  1   345789999999999999866555 999987654321  1222222233344677776555


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCcee-----eeEEecCCCCcee
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGL-----VKGYNMPCNTESA  233 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~~~~  233 (264)
                      .+.....++.+..+++.-     .....     -..+|+.. .++.-++..+++-.++....     ...+..+..+...
T Consensus       363 ~L~v~t~~g~~~~~~~~~-----~v~~s-----~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v  432 (928)
T PF04762_consen  363 RLHVLTSNGQYEIYDFAW-----DVSRS-----PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV  432 (928)
T ss_pred             EEEEEecCCcEEEEEEEE-----EEEec-----CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence            444444435555544320     01000     00112222 34445566788777765432     2445566777777


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ++.+. +..+++-..|+.+.+|....
T Consensus       433 af~~~-~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  433 AFSPS-NSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             EEeCC-CCeEEEEECCCCEEEEEecC
Confidence            88775 55588888899999998543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.45  E-value=0.00014  Score=64.36  Aligned_cols=226  Identities=15%  Similarity=0.133  Sum_probs=125.5

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeee--CCc---CCEEE-EEECCCCcEEEEec---------CCCeEEEEeCCCCcEE
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFE--GHK---GAVWS-CCLDANALFSASGS---------ADFTAKLWDALTGDEK   96 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~---~~V~~-v~~~~~~~~l~s~s---------~D~~v~iwd~~~~~~~   96 (264)
                      ..++.++.++.+.-.|.++|+.+=.+.  .+.   ..+.+ ..+. ++. ++.++         .++.+.-.|..+|+.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccccCCCCcEEEEEECCCCcee
Confidence            577788889999999999998654333  221   00111 1111 233 33333         3678888999999887


Q ss_pred             EEeecCCe---------------------E-EEEEECCCCCEEEEeeCCC------------------cEEEeeCCCCCC
Q 024676           97 HSFEHKHI---------------------V-RACAFSEDTHLLLTGGFEK------------------ILRIFDLNRPDA  136 (264)
Q Consensus        97 ~~~~~~~~---------------------v-~~~~~~~~~~~l~s~~~d~------------------~i~~~d~~~~~~  136 (264)
                      ..++...+                     + ....+++.+.+++.++.++                  .+.-+|.++++.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            77653210                     0 1223445566777776554                  577888888877


Q ss_pred             CCeEeccCCC-----C--eEEEE-Ee-cCCC--eEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-
Q 024676          137 PPREVGNSSG-----S--IRTVA-WL-HSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-  204 (264)
Q Consensus       137 ~~~~~~~~~~-----~--i~~~~-~~-~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-  204 (264)
                      ..........     .  ...+. .. -++.  .++..++.+|.+...|.++|+.+...+..  ...+..+| +..++. 
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~-~~vyv~~  345 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP-GLVYLGA  345 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC-ceEEEcc
Confidence            6654321110     0  00110 00 0111  24555566799999999999988765432  11122333 222221 


Q ss_pred             -----------------eCCCcEEEEECCCceeeeEEecC---------CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          205 -----------------ADGSSVKFWDANHFGLVKGYNMP---------CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       205 -----------------~~~~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                                       ..++.+.-.|+.+++.+=.+...         .......... .+..++.++.|+.++.+|.+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECC
Confidence                             11345666677766654333322         1110011111 35678888899999999999


Q ss_pred             cceee
Q 024676          259 TGEQI  263 (264)
Q Consensus       259 ~g~~i  263 (264)
                      +|+++
T Consensus       425 tG~~l  429 (488)
T cd00216         425 TGKEL  429 (488)
T ss_pred             CCcee
Confidence            99976

The alignment model contains an 8-bladed beta-propeller.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.44  E-value=0.0003  Score=56.39  Aligned_cols=174  Identities=18%  Similarity=0.213  Sum_probs=106.9

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee----C-CcCCEEEEEECCCCcEEEEecCC--------CeE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE----G-HKGAVWSCCLDANALFSASGSAD--------FTA   85 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~----~-H~~~V~~v~~~~~~~~l~s~s~D--------~~v   85 (264)
                      ...+.+..  ++|.++++ ...+ +.++|..+++....+.    . .....+.+++.++|.+.+|....        +.+
T Consensus        42 ~~G~~~~~--~~g~l~v~-~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDR--PDGRLYVA-DSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEEC--TTSEEEEE-ETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEc--cCCEEEEE-EcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence            44566662  36666554 4444 4555988886543322    2 34566889999999877775544        345


Q ss_pred             EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCCCCCCCC---eEe---ccCCCCeEEEEEecCCC
Q 024676           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPP---REV---GNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~  158 (264)
                      ..++.. ++.......-...+.++|+|+++.|+ +-+..+.|..+++.......   ...   ....+..-.+++-. ++
T Consensus       118 ~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G  195 (246)
T PF08450_consen  118 YRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DG  195 (246)
T ss_dssp             EEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS
T ss_pred             EEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CC
Confidence            556655 44444444455678999999998776 45677889989886433211   111   11112355677655 45


Q ss_pred             eEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEc-CCC
Q 024676          159 TILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVS-RDG  199 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s-~~~  199 (264)
                      .+.++....+.|.++|.+ |+.+..+... ..+++++|. |+.
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~  237 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDG  237 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence            566666667999999988 8877766544 468889994 554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.41  E-value=0.00054  Score=54.69  Aligned_cols=197  Identities=13%  Similarity=0.106  Sum_probs=117.4

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCC-cCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H-~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      +.|-.+.+.+|.|+|  .++.+++.....+.+...+. +|+.++.+.-. -+..-.|++..++.++++--+++.+.+.++
T Consensus        17 l~g~~~e~SGLTy~p--d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   17 LPGILDELSGLTYNP--DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             -TT--S-EEEEEEET--TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             CCCccCCccccEEcC--CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            356666799999997  23456666666666655665 57777765432 356788999999999888878999999887


Q ss_pred             CCC--c-EE---EEee------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC--CCCCCeE--------eccCCCCe
Q 024676           91 LTG--D-EK---HSFE------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPRE--------VGNSSGSI  148 (264)
Q Consensus        91 ~~~--~-~~---~~~~------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~--~~~~~~~--------~~~~~~~i  148 (264)
                      ...  . ..   ..+.      ++..+-.++|+|.++.|+.+-.....++|.++.  .......        .......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            332  1 11   1221      345689999999888888887777777887653  1111110        01123456


Q ss_pred             EEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC----------CCEEEEEEcCCCcEEEEeCCCcEEE
Q 024676          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSSVKF  212 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~~~i~i  212 (264)
                      ..+++.|..+++++-+.....|-.+| .+|+.+..+...          ...-.+++.++|++.++++.+....
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~  246 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR  246 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence            78888888888888778888999999 667776655432          2477899999999888887654443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.40  E-value=7.2e-05  Score=63.55  Aligned_cols=194  Identities=15%  Similarity=0.092  Sum_probs=118.8

Q ss_pred             CeeeeEeccCCCCCeEEEE-----EeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec-----------C
Q 024676           18 PVVDLFYSPITPDGFFLVS-----ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-----------A   81 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t-----~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s-----------~   81 (264)
                      .|..-.|+|.. ++..||.     ...+..+++|.+..++.+.+-.--+..=..+.|.+.+.+++.--           .
T Consensus       175 gi~dFsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         175 GILDFSISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             ceeeEEecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            45555566532 2223322     35677788888877665433211112223466777776654211           1


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEee--CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      ...+.|.++............++|...+|.|.++.+++.+  .+..+.++|++..   ..... ..+.-+.+.|+|...+
T Consensus       254 esnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~-Pe~~rNT~~fsp~~r~  329 (561)
T COG5354         254 ESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYF-PEQKRNTIFFSPHERY  329 (561)
T ss_pred             cceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc---eEEec-CCcccccccccCcccE
Confidence            1356677766443333334578999999999888777654  6788889998753   22222 3344455667887877


Q ss_pred             EEEEeeCC--CeEEEEECCCCceeE-EecCCCCEEEEEEcCCCcEEEEe-------CCCcEEEEECCC
Q 024676          160 ILSSCTDS--GGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYITTA-------DGSSVKFWDANH  217 (264)
Q Consensus       160 ~~~~~~~d--~~v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~-------~~~~i~iwd~~~  217 (264)
                      ++..+.+.  |.+-+||......+. .+... ...-+.|+||+.|+-..       .|..|+|||+..
T Consensus       330 il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             EEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            77766543  679999988665443 45442 34557899999987543       256799999854

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.38  E-value=8.5e-06  Score=73.52  Aligned_cols=142  Identities=18%  Similarity=0.218  Sum_probs=102.3

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec---------CCCeEEEEeCCCCcEEEEeec
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---------ADFTAKLWDALTGDEKHSFEH  101 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s---------~D~~v~iwd~~~~~~~~~~~~  101 (264)
                      +++|.+|...|+|.+-|.++.+.+.+|..|++.|..  |+-.|..|+|++         .|..|++||++..+.+.-+..
T Consensus       187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~  264 (1118)
T KOG1275|consen  187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF  264 (1118)
T ss_pred             CcEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc
Confidence            678999999999999999999999999999999965  555577777764         467899999987665555543


Q ss_pred             CCeEEEEEECCC-CCEEEEeeCCCcEEEee---CCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676          102 KHIVRACAFSED-THLLLTGGFEKILRIFD---LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus       102 ~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      ...-..+.|+|. ...++.++..|...+-|   +..+.............+..+++++.++. ++-+..+|.|.+|--
T Consensus       265 ~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  265 PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDA-LAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCce-EEEecccCcEeeecC
Confidence            333456777884 45677778888888887   33332222233333344888888876664 555666799999973

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.36  E-value=0.00024  Score=63.04  Aligned_cols=185  Identities=16%  Similarity=0.017  Sum_probs=105.8

Q ss_pred             cCCCCCeEEEEE-eCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC----eEEEEeCCCCcEEEEee
Q 024676           26 PITPDGFFLVSA-SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF----TAKLWDALTGDEKHSFE  100 (264)
Q Consensus        26 ~~~~~g~~l~t~-s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~----~v~iwd~~~~~~~~~~~  100 (264)
                      |+.+||+.|... -..+.+.+.|.++.+...++.-- +.-..++++++++++.+.+.+.    ++-.-+.........+.
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            455566554322 22334555677766655444311 1224567888888876655321    22222211111111111


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC----CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR----PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      -..   .-.+.+++++...  .++.+.+.|..+    +......+ ......+.+..+|++.++++++.-+.+|.|.|++
T Consensus       278 i~~---iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        278 IAR---IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             hHH---HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence            000   0133456776665  357899999876    22222233 3445668889999999999998888999999999


Q ss_pred             CCce------------eEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCC
Q 024676          177 SGKI------------VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (264)
Q Consensus       177 ~~~~------------~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~  217 (264)
                      +.+.            +.+.+..-...-.+|.++|...++- -|..|-.||+.+
T Consensus       352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            8663            2333322233346788888766554 377899999875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.36  E-value=0.00026  Score=56.13  Aligned_cols=166  Identities=18%  Similarity=0.215  Sum_probs=102.4

Q ss_pred             CCee-eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-------CcCCEEEEEECCC------CcEEEEecCC
Q 024676           17 RPVV-DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-------HKGAVWSCCLDAN------ALFSASGSAD   82 (264)
Q Consensus        17 ~~v~-~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-------H~~~V~~v~~~~~------~~~l~s~s~D   82 (264)
                      .|=+ .++|+|   |+..||.+...|+|+++|+.... +..+..       -..+|-.+.|-.-      ..-|..-..+
T Consensus        43 ~PQWRkl~WSp---D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~  118 (282)
T PF15492_consen   43 NPQWRKLAWSP---DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR  118 (282)
T ss_pred             CchheEEEECC---CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc
Confidence            3434 488985   99999999999999999987533 333322       1345666666432      1134445566


Q ss_pred             CeEEEEeCCCC-----cEEEEee----cCCeEEEEEECCCCCEEEEeeCC----C-------cEEEeeCCCCCCC-----
Q 024676           83 FTAKLWDALTG-----DEKHSFE----HKHIVRACAFSEDTHLLLTGGFE----K-------ILRIFDLNRPDAP-----  137 (264)
Q Consensus        83 ~~v~iwd~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d----~-------~i~~~d~~~~~~~-----  137 (264)
                      |.++=+-+..+     ....++.    ....|.++.|+|..++|+.|+..    +       -+..|-+-.+..-     
T Consensus       119 G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~  198 (282)
T PF15492_consen  119 GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT  198 (282)
T ss_pred             ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence            66666654221     2333333    35679999999999998877531    1       1334433111100     


Q ss_pred             ------------------C-----eEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC
Q 024676          138 ------------------P-----REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK  187 (264)
Q Consensus       138 ------------------~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~  187 (264)
                                        .     .........+..+..+|++. ++++..-+|.|.+|++.+.+++..+...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcccchh
Confidence                              0     00112345678888887655 6666777799999999998888777654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=3.8e-07  Score=81.77  Aligned_cols=192  Identities=18%  Similarity=0.214  Sum_probs=128.1

Q ss_pred             EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeC-CC-cEEEeeC
Q 024676           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGF-EK-ILRIFDL  131 (264)
Q Consensus        55 ~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~-d~-~i~~~d~  131 (264)
                      +.|..|...-.+++|+.+..+++.|+..|.|+++++.+|.....+ .|..+|+.+.-+.++..+++.+. .. -.-+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            467778888899999999999999999999999999998755544 58999999988888888776543 33 3567887


Q ss_pred             CCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe-c----CCCCEEEEEEcCCCcEEEEeC
Q 024676          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E----TKSPVTSAEVSRDGRYITTAD  206 (264)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~----~~~~v~~~~~s~~~~~l~~~~  206 (264)
                      .+.......+    .+-.++.|+.....-++++-. ....|||.+|+.++.++ .    .+..-+.+.|+|+..++.-  
T Consensus      1175 ~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~-d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHSF----DEDKAVKFSNSLQFRALGTEA-DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred             ccccCccccc----cccceeehhhhHHHHHhcccc-cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee--
Confidence            5421111111    122344555433333333333 46999999999877653 2    1233477889999887653  


Q ss_pred             CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       207 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ||  .+||.|.-+.++.|.--.......|+|. |..++.-++     |||+.|-+
T Consensus      1248 dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~-g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPS-GNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred             Cc--eeeeeccHHHHhhhhhheecccccccCC-CceEEeech-----hhhhHHHH
Confidence            33  5799998777777643223334567774 666666654     57766543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.35  E-value=9.7e-05  Score=65.46  Aligned_cols=184  Identities=11%  Similarity=0.064  Sum_probs=116.5

Q ss_pred             ECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcE--EEeeCCCCCCCCeEeccCC
Q 024676           69 LDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL--RIFDLNRPDAPPREVGNSS  145 (264)
Q Consensus        69 ~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i--~~~d~~~~~~~~~~~~~~~  145 (264)
                      +++|++.+ .+.-..+.+-+.|..+.+....+........+.++|+++++++++.+...  .+-.+...+..........
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            45677654 33444567777888877776666655556778899999999988743211  1111111111100000000


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCeEEEEECCC-----CceeEEecCCCCEEEEEEcCCCcEEEEeC--CCcEEEEECCCc
Q 024676          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-----GKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHF  218 (264)
Q Consensus       146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~  218 (264)
                      . +.  .+.+++....+   .+++|.+.|.++     .+.+..+........+.++|||+++..+.  +.++.+.|+.+.
T Consensus       280 ~-ie--a~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        280 R-IE--EAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             H-HH--HhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence            0 00  12234444443   247899999998     45666666666778899999999876654  679999999886


Q ss_pred             ee------------eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          219 GL------------VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       219 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      +.            +......-.+.-..|.++ |..+.+--.|..|-.||+.+
T Consensus       354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence            52            444455555666677765 67888888999999999865

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.34  E-value=1.1e-05  Score=64.62  Aligned_cols=195  Identities=15%  Similarity=0.261  Sum_probs=117.9

Q ss_pred             cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-EEE----Ee-------------ecCCeEEEEEECCC--CCEEEEe
Q 024676           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKH----SF-------------EHKHIVRACAFSED--THLLLTG  120 (264)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~----~~-------------~~~~~v~~~~~~~~--~~~l~s~  120 (264)
                      .+.|.+|.|...|.+++||...|.|.++.-.... +..    .+             +-...|+.+.|-..  ...++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4578899999999999999988999999754322 111    11             12334677777543  3445667


Q ss_pred             eCCCcEEEeeCCCCCCC--------------------------CeEe----------------ccCCCCeEEEEEecCCC
Q 024676          121 GFEKILRIFDLNRPDAP--------------------------PREV----------------GNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus       121 ~~d~~i~~~d~~~~~~~--------------------------~~~~----------------~~~~~~i~~~~~~~~~~  158 (264)
                      +.|++|++|.+......                          ..+.                ..|.-.+.++.++.+.+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            79999999987532100                          0000                11223366777776666


Q ss_pred             eEEEEeeCCCeEEEEECCCCce---eEEecCC------CCEEEEEEcCCC--cEEEEeCCCcEEEEECCCceee----eE
Q 024676          159 TILSSCTDSGGVRLWDARSGKI---VQTLETK------SPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLV----KG  223 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~------~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~~----~~  223 (264)
                      .++.  ++|=.|.+|.++.-..   +..++.+      ..|++..|+|..  .+.-+++.|.|++-|+|.....    +.
T Consensus       186 t~lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         186 TLLS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             eeee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            5553  3567899999875432   1222222      347899999975  3344566789999999843221    11


Q ss_pred             EecC-------------CCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          224 YNMP-------------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       224 ~~~~-------------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      +...             .....+-|.+ .|+++++-+. -+|.+||+.-
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm  310 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNM  310 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEeccc
Confidence            1110             0111223444 5888888876 5799999863

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.34  E-value=4.5e-06  Score=65.01  Aligned_cols=232  Identities=16%  Similarity=0.174  Sum_probs=129.0

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce------------EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------------IGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~------------~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      |..+.+.    +...|+++-.++.+.......+.+            ...+.-|.++-..-+-+-.+..++++..|+.+-
T Consensus        39 ~~~~~~v----~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~  114 (319)
T KOG4714|consen   39 LSKVSLS----AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLA  114 (319)
T ss_pred             EEEeech----hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEE
Confidence            4455554    345677887777776654433211            223333444333333333466789999999999


Q ss_pred             EEeCCCCcE-EEEee--cCCeEEEEEECCCCCEEEEeeC-----CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           87 LWDALTGDE-KHSFE--HKHIVRACAFSEDTHLLLTGGF-----EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        87 iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~s~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      +.+...-.. ....+  |.. ....++-..++.+.++.-     -+..+.|+++-.......... ...+.+++--|...
T Consensus       115 v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq  192 (319)
T KOG4714|consen  115 VFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQ  192 (319)
T ss_pred             EEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccc
Confidence            998755211 11111  111 111222233444444321     122445554321111111111 22367777667777


Q ss_pred             eEEEEeeCCCeEEEEECCCCcee-EEe-cCCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCcee--------------
Q 024676          159 TILSSCTDSGGVRLWDARSGKIV-QTL-ETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGL--------------  220 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~~~--------------  220 (264)
                      ++++.+++||.+-+||.|..... ..+ .++.++..+-|+|..  +++++++||.+.-||..+...              
T Consensus       193 ~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLs  272 (319)
T KOG4714|consen  193 HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLS  272 (319)
T ss_pred             cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcccccccccc
Confidence            88999999999999999987422 222 245778899999864  678889999999999874211              


Q ss_pred             ---eeE-Eec----CCCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          221 ---VKG-YNM----PCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       221 ---~~~-~~~----~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                         ++. +.+    +....++.-+.-.|..|++|+.-+.|++++
T Consensus       273 gD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  273 GDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence               111 111    111112211222477899999999999986

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.32  E-value=0.00068  Score=63.48  Aligned_cols=196  Identities=11%  Similarity=0.168  Sum_probs=122.9

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE----eCCC
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW----DALT   92 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw----d~~~   92 (264)
                      ..|.++.|..   +.+.++.+..+|.|.+-|.++..+. ....-...|.+++|+||+..++-...++++.+=    +.-.
T Consensus        69 ~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLA---DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEec---ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence            5777888874   7778889999999999988877531 122235689999999999988766667766552    2211


Q ss_pred             CcEE-------------------EEee-------------cCC---------eEEEEEECCCCCEEEEe----eCC-CcE
Q 024676           93 GDEK-------------------HSFE-------------HKH---------IVRACAFSEDTHLLLTG----GFE-KIL  126 (264)
Q Consensus        93 ~~~~-------------------~~~~-------------~~~---------~v~~~~~~~~~~~l~s~----~~d-~~i  126 (264)
                      ...+                   ..+.             +.+         .=..++|--+|+++++.    -.+ +.|
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            1111                   0010             111         11247888899888873    234 899


Q ss_pred             EEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe--eCCCeEEEEECCCCceeEEe----cC-CCCEEEEEEcCCC
Q 024676          127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC--TDSGGVRLWDARSGKIVQTL----ET-KSPVTSAEVSRDG  199 (264)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~d~~v~iwd~~~~~~~~~~----~~-~~~v~~~~~s~~~  199 (264)
                      ++||.+ +... ...-+..+.-.+++|-|.+..+.+..  .+|+.|.+|.-. |-....+    .. ..++..++|+.++
T Consensus       225 rV~drE-g~Ln-s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  225 RVYDRE-GALN-STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNS  301 (1265)
T ss_pred             EEeccc-chhh-cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCC
Confidence            999976 3322 22222344456788998665544322  244578888744 3222222    22 2348899999999


Q ss_pred             cEEEE---e-CCCcEEEEECCCce
Q 024676          200 RYITT---A-DGSSVKFWDANHFG  219 (264)
Q Consensus       200 ~~l~~---~-~~~~i~iwd~~~~~  219 (264)
                      ..|+.   . ....|++|-+.++.
T Consensus       302 diLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  302 DILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CceeeeecccccceEEEEEecCeE
Confidence            88765   2 23459999998864

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.30  E-value=5.5e-05  Score=68.51  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=120.5

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEE
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA  109 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~  109 (264)
                      +..++-|+.-..+..+|.++.+..+...--...|.-++  .+++++.+|...|+|-+-|..+.+.+.++. |...+..  
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--  222 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--  222 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence            34556666666666778887766555432222344333  457888999999999999999999888885 6666654  


Q ss_pred             ECCCCCEEEEeeC---------CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC---
Q 024676          110 FSEDTHLLLTGGF---------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---  177 (264)
Q Consensus       110 ~~~~~~~l~s~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~---  177 (264)
                      |+-+|++|++|+.         |..+++||++.-+...-. .-+.++ ..+.+.|.-...++.++..|...+-|..+   
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence            5677999999874         566899999865432211 112222 23445565555666677779999988432   


Q ss_pred             Cc-eeEEec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECC
Q 024676          178 GK-IVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDAN  216 (264)
Q Consensus       178 ~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~  216 (264)
                      -. .+.-+. ..+.+....+|+++..++.++ ++.|.+|.-+
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            21 122222 334589999999999998876 6899999743

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.26  E-value=0.0012  Score=54.53  Aligned_cols=233  Identities=12%  Similarity=0.059  Sum_probs=135.6

Q ss_pred             CCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeC---CcCCE----EEEEECCCCcEEEEe--cCCCeEEEE
Q 024676           28 TPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEG---HKGAV----WSCCLDANALFSASG--SADFTAKLW   88 (264)
Q Consensus        28 ~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~---H~~~V----~~v~~~~~~~~l~s~--s~D~~v~iw   88 (264)
                      +|||+.+.+++          ..--|.+||..+.+...++.-   |+..+    +..+++.|++++...  +--.+|-+-
T Consensus        44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV  123 (342)
T PF06433_consen   44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV  123 (342)
T ss_dssp             -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred             CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence            35888777653          234578899999887776532   23322    335777888776532  334578888


Q ss_pred             eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE----eccCCCCeE-EEEEecCCCeEEEE
Q 024676           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIR-TVAWLHSDQTILSS  163 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~----~~~~~~~i~-~~~~~~~~~~~~~~  163 (264)
                      |+..++.+..+.........-+.+.  -+.+-|.||.+-...++......+.    +.....++. .-++...+..++-.
T Consensus       124 Dl~~~kvv~ei~~PGC~~iyP~~~~--~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~  201 (342)
T PF06433_consen  124 DLAAKKVVGEIDTPGCWLIYPSGNR--GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV  201 (342)
T ss_dssp             ETTTTEEEEEEEGTSEEEEEEEETT--EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE
T ss_pred             ECCCCceeeeecCCCEEEEEecCCC--ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE
Confidence            8888888877776666555444443  4677788999888887633221111    111122222 22233333333333


Q ss_pred             eeCCCeEEEEECCCCcee--EEecCC-----------CCEEEEEEcCCC-cEEE-Ee--C-----C--CcEEEEECCCce
Q 024676          164 CTDSGGVRLWDARSGKIV--QTLETK-----------SPVTSAEVSRDG-RYIT-TA--D-----G--SSVKFWDANHFG  219 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~--~~~~~~-----------~~v~~~~~s~~~-~~l~-~~--~-----~--~~i~iwd~~~~~  219 (264)
                       +..|.|+--|+......  ..++.-           ....-+++++.. ++++ --  .     +  ..|.++|+.+.+
T Consensus       202 -Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k  280 (342)
T PF06433_consen  202 -SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK  280 (342)
T ss_dssp             -BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred             -ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence             35588888888766532  233210           123456777644 4433 21  1     1  248888999999


Q ss_pred             eeeEEecCCCCceeeEcCCCCCEEE-EecCCCeEEEEEcCcceee
Q 024676          220 LVKGYNMPCNTESASLEPKLGNIFI-AGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~-~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+..+.......++..+.+..-+|. ....++.+.+||..+|+.+
T Consensus       281 rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  281 RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            9999987666667777665554554 4567899999999999876

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.26  E-value=8.1e-05  Score=66.40  Aligned_cols=203  Identities=14%  Similarity=0.160  Sum_probs=127.8

Q ss_pred             eccCCCeeeeEeccCC-------C--CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC---CC-cEEEEe
Q 024676           13 HGHSRPVVDLFYSPIT-------P--DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NA-LFSASG   79 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~-------~--~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~---~~-~~l~s~   79 (264)
                      .-|...|+.|+|.|..       |  ..-.||++...|.|.+||...+..+-.|+.|.++|..++|-+   +. ..++.-
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI  131 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI  131 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence            4688999999999832       1  133567777788999999999988888888999999999854   34 455665


Q ss_pred             cCCCeEEEEeCCCCcEEEEeecCC-eEEEEEECC-CCCEEEEeeCCCcEEEeeC-CCCCC--CC--eEe-ccCCC-----
Q 024676           80 SADFTAKLWDALTGDEKHSFEHKH-IVRACAFSE-DTHLLLTGGFEKILRIFDL-NRPDA--PP--REV-GNSSG-----  146 (264)
Q Consensus        80 s~D~~v~iwd~~~~~~~~~~~~~~-~v~~~~~~~-~~~~l~s~~~d~~i~~~d~-~~~~~--~~--~~~-~~~~~-----  146 (264)
                      ....++-+|+..+|+....+.-.+ +..+..++| +.+.+..-+..|.+.+-+. ...+.  +.  .++ ..|..     
T Consensus       132 h~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le  211 (1062)
T KOG1912|consen  132 HGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE  211 (1062)
T ss_pred             cCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence            667799999999999877766444 345577888 4444444445555554442 11110  00  111 11110     


Q ss_pred             -----------C---------eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCc--EEE
Q 024676          147 -----------S---------IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR--YIT  203 (264)
Q Consensus       147 -----------~---------i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~--~l~  203 (264)
                                 .         ....+|+|.-.+++.... .+.+.|+|++=..++..... .+.+..+.+-|+++  .+.
T Consensus       212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf  290 (1062)
T KOG1912|consen  212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF  290 (1062)
T ss_pred             hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence                       0         011233443344433333 37899999998888776643 33455677777763  344


Q ss_pred             E-eCCCcEEEEECC
Q 024676          204 T-ADGSSVKFWDAN  216 (264)
Q Consensus       204 ~-~~~~~i~iwd~~  216 (264)
                      + ..+|.+.||--+
T Consensus       291 clH~nG~ltirvrk  304 (1062)
T KOG1912|consen  291 CLHSNGRLTIRVRK  304 (1062)
T ss_pred             EEecCCeEEEEEee
Confidence            4 568888888654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.21  E-value=5.3e-05  Score=66.76  Aligned_cols=193  Identities=19%  Similarity=0.187  Sum_probs=122.3

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCCce-EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE--EEEe-----e
Q 024676           29 PDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--KHSF-----E  100 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~~~-~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~-----~  100 (264)
                      ..+.+++.|+.-|.+.+|+-..+.. +.+.++-.+.+..+.++++..++|.|++.|.|-++-+..+.+  ...+     .
T Consensus        43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~  122 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS  122 (726)
T ss_pred             cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc
Confidence            4678999999999999999888764 345556556677788899999999999999999987765321  1111     2


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC---CCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP---DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (264)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~  177 (264)
                      |+..|++++|++++..+++|...|++..-.++..   -...+.+....++|..++++  +..++++..  -.-.+++.+.
T Consensus       123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl--~r~~Lc~tE~  198 (726)
T KOG3621|consen  123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL--TRCILCQTEA  198 (726)
T ss_pred             CCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh--hhhheeecch
Confidence            5678999999999999999999999988877651   11222333345566666654  334444432  2345566654


Q ss_pred             Cce--eEEecCCCC-EEEEEEcCC-----CcEEEEeCCCcEEEEECC-CceeeeEEec
Q 024676          178 GKI--VQTLETKSP-VTSAEVSRD-----GRYITTADGSSVKFWDAN-HFGLVKGYNM  226 (264)
Q Consensus       178 ~~~--~~~~~~~~~-v~~~~~s~~-----~~~l~~~~~~~i~iwd~~-~~~~~~~~~~  226 (264)
                      ++.  +..-.-.++ -..++|-|.     .-+|.++. -..|+|... .++.++++++
T Consensus       199 eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-PG~RlWead~~G~V~~Thqf  255 (726)
T KOG3621|consen  199 ETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-PGLRLWEADFAGEVIKTHQF  255 (726)
T ss_pred             hHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-CCCceEEeecceeEEEeeeh
Confidence            432  111111221 122333332     23555654 246778764 4566666654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.18  E-value=0.0023  Score=52.12  Aligned_cols=218  Identities=16%  Similarity=0.127  Sum_probs=125.5

Q ss_pred             CCeEEEEEeCCCCcEEEeCC-CCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE-----------
Q 024676           30 DGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH-----------   97 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~-~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-----------   97 (264)
                      .++.|+.|..+| +.+++.. .....+..  +...|..+...++-..++.-+ |+.+.++++..-....           
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            577899999988 7888873 23333333  223488998888766655544 5999999986543222           


Q ss_pred             ----EeecCCeEEEEE--ECCCCCEEEEeeCCCcEEEeeCCCCC----CCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           98 ----SFEHKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        98 ----~~~~~~~v~~~~--~~~~~~~l~s~~~d~~i~~~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                          .+.....+...+  -.+.+...+.+...+.+.+|......    ....++ .....+..++|.+  ..++ .+.. 
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~~--~~i~-v~~~-  156 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFLG--NKIC-VGTS-  156 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEeC--CEEE-EEeC-
Confidence                222333455544  23344445555666789988876532    122333 2346778888883  3344 4444 


Q ss_pred             CeEEEEECCCCceeEEecC-------------CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee--EEecCCCCce
Q 024676          168 GGVRLWDARSGKIVQTLET-------------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYNMPCNTES  232 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~  232 (264)
                      +...+.|+.++........             ..++..+.. +++.+|.+-++ .-.+.|. .++..+  .+.....+..
T Consensus       157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~-~G~~~r~~~i~W~~~p~~  233 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNK-NGEPSRKSTIQWSSAPQS  233 (275)
T ss_pred             CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcC-CCCcCcccEEEcCCchhE
Confidence            5688999998765433321             123333333 34566665432 2233343 444433  4444556666


Q ss_pred             eeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +.+..   .++++-+. +.|-||++.+|+.+
T Consensus       234 ~~~~~---pyli~~~~-~~iEV~~~~~~~lv  260 (275)
T PF00780_consen  234 VAYSS---PYLIAFSS-NSIEVRSLETGELV  260 (275)
T ss_pred             EEEEC---CEEEEECC-CEEEEEECcCCcEE
Confidence            66643   35666655 45999999999764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.17  E-value=0.00026  Score=61.43  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             EEEEECCC-CcEEE----EecCCCeEE----EEeCCCCcE----EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC
Q 024676           65 WSCCLDAN-ALFSA----SGSADFTAK----LWDALTGDE----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (264)
Q Consensus        65 ~~v~~~~~-~~~l~----s~s~D~~v~----iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~  131 (264)
                      .++.|+.. ...+.    +.+.+|.+.    +|++..++.    ...++.+..|.+++++|+...++.|+.||.+.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            45667642 22232    335555433    466654432    234467888999999999999999999999999998


Q ss_pred             CCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (264)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~  178 (264)
                      ..+...   .....-....++|.|++ .++++|++.|.+.+||..-.
T Consensus       289 ~~~~t~---~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  289 TRGVTL---LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCCeee---eeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence            755322   11233456778898755 56667777799999998644

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.12  E-value=6.1e-07  Score=77.81  Aligned_cols=161  Identities=15%  Similarity=0.184  Sum_probs=111.6

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEe----CCCCcEEEeCCCC--ce--EEeeeC-CcCCEEEEEECCCCcEEEEecCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSAS----KDSSPMLRNGETG--DW--IGTFEG-HKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s----~d~~v~i~~~~~~--~~--~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      .+|.++-++++|+++  |-++||+|-    .|..+.|||..++  .+  ...|.+ ......+++|.-+.+++.+|..-+
T Consensus        99 p~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr  176 (783)
T KOG1008|consen   99 PGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR  176 (783)
T ss_pred             ccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence            468888899999985  677888873    3556899999876  22  122333 445566899998888899999999


Q ss_pred             eEEEEeCCCCcEEEEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEee-CCCCCCCCeEeccCC----CCeEEEEEecCC
Q 024676           84 TAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD-LNRPDAPPREVGNSS----GSIRTVAWLHSD  157 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d-~~~~~~~~~~~~~~~----~~i~~~~~~~~~  157 (264)
                      .++++|++........-.++.+..+.++| ...++++- .|+.|-+|| .+.-+.+...+...+    ..+..++|+|--
T Consensus       177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            99999987543322222455778888899 67777654 499999999 333232222222222    247889999876


Q ss_pred             CeEEEEeeCC-CeEEEEECC
Q 024676          158 QTILSSCTDS-GGVRLWDAR  176 (264)
Q Consensus       158 ~~~~~~~~~d-~~v~iwd~~  176 (264)
                      ..++++++.| ++|+++|++
T Consensus       256 tglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  256 TGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cchhhhhccCcceEEEeccc
Confidence            6677777754 689999985

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.11  E-value=8.4e-07  Score=76.97  Aligned_cols=195  Identities=17%  Similarity=0.155  Sum_probs=120.0

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEeeeCCcCCEEEEEECC-CCcEEEEe----cCCCeEEEEeC
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDA-NALFSASG----SADFTAKLWDA   90 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~-~~~~l~s~----s~D~~v~iwd~   90 (264)
                      -+.|+++.-. -+...++.|.++|.|-+-+......  -....+|.-+..+++|.+ |...||.|    -.|..++|||+
T Consensus        58 y~kcva~~y~-~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   58 YVKCVASFYG-NDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CceeehhhcC-CchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            3455555432 2356789999999998876543321  123345666788899986 44566655    33568999999


Q ss_pred             CCC--cEEEEee----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           91 LTG--DEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        91 ~~~--~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      .++  .++....    .......++|-.+.+++++|...+.+.++|++-.-.....+  .+..+..+...|-...++++.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            887  3333322    22345688899999999999999999999987221111111  122233333344233456655


Q ss_pred             eCCCeEEEEE-CCCCc-eeEEecCC-----CCEEEEEEcCC--CcEEEEeC-CCcEEEEECC
Q 024676          165 TDSGGVRLWD-ARSGK-IVQTLETK-----SPVTSAEVSRD--GRYITTAD-GSSVKFWDAN  216 (264)
Q Consensus       165 ~~d~~v~iwd-~~~~~-~~~~~~~~-----~~v~~~~~s~~--~~~l~~~~-~~~i~iwd~~  216 (264)
                      . |+.|-+|| .++-+ .+.++...     ..+..++|+|-  |.+++... .++|+++|+.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            4 69999999 54433 23322221     23788999985  44544444 5799999985

>smart00320 WD40 WD40 repeats

Probab=98.07  E-value=1.6e-05  Score=42.83  Aligned_cols=38  Identities=39%  Similarity=0.635  Sum_probs=34.0

Q ss_pred             ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        52 ~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      +.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.02  E-value=0.0013  Score=56.80  Aligned_cols=171  Identities=16%  Similarity=0.146  Sum_probs=99.1

Q ss_pred             CceEEeeeCCcCCEEEEEECCCCcEEEEe---cCC-CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEe-eCCCc
Q 024676           51 GDWIGTFEGHKGAVWSCCLDANALFSASG---SAD-FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKI  125 (264)
Q Consensus        51 ~~~~~~~~~H~~~V~~v~~~~~~~~l~s~---s~D-~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~  125 (264)
                      |...+.+..-...+..-+|++++..++-.   ... ..+.++++.++..............-.|+|+++.|+-+ ..|+.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence            33333343333455666788888765432   222 46888999888755555444444456799999877755 44555


Q ss_pred             --EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe--EEEEECCCCceeE-EecCCCCEEEEEEcCCCc
Q 024676          126 --LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQ-TLETKSPVTSAEVSRDGR  200 (264)
Q Consensus       126 --i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~--v~iwd~~~~~~~~-~~~~~~~v~~~~~s~~~~  200 (264)
                        |.+.|+.....  ..+....+....-.|+|++..++.+.+..|.  |.+.|.+.....+ +....... .-.++|||+
T Consensus       262 ~~iy~~dl~~~~~--~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~  338 (425)
T COG0823         262 PDIYLMDLDGKNL--PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGD  338 (425)
T ss_pred             ccEEEEcCCCCcc--eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCC
Confidence              45556655442  2232233333355788999988777766665  5555666665433 22222222 667999999


Q ss_pred             EEEEeC--CCc--EEEEECCCceeeeEE
Q 024676          201 YITTAD--GSS--VKFWDANHFGLVKGY  224 (264)
Q Consensus       201 ~l~~~~--~~~--i~iwd~~~~~~~~~~  224 (264)
                      +++...  ++.  |.+.|+.+...++..
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEc
Confidence            876543  344  556666554433333

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.0011  Score=59.65  Aligned_cols=153  Identities=18%  Similarity=0.175  Sum_probs=103.1

Q ss_pred             CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe
Q 024676           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (264)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (264)
                      +.+.+++++  +.+++-|..+|.|.+.+..... ...+.|...      +.+|.+++||+.||++.+..+.+.+..... 
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY-  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE-
Confidence            445555555  5678889999999999975543 444444333      668999999999999999887665543222 


Q ss_pred             ccCCCCeEEEEEecC----CCeEEEEeeCCCeEEEEECCC---CceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEE
Q 024676          142 GNSSGSIRTVAWLHS----DQTILSSCTDSGGVRLWDARS---GKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (264)
Q Consensus       142 ~~~~~~i~~~~~~~~----~~~~~~~~~~d~~v~iwd~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd  214 (264)
                       ....++.++++.|+    ....+++|+..| +-++.-+=   ...+..-...++|.++.|.  |.+++=++|-.|++||
T Consensus       110 -df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd  185 (846)
T KOG2066|consen  110 -DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYD  185 (846)
T ss_pred             -ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEe
Confidence             34557788887765    123455555556 66654321   1112122455789999994  5688888888999999


Q ss_pred             CCCceeeeEEecCC
Q 024676          215 ANHFGLVKGYNMPC  228 (264)
Q Consensus       215 ~~~~~~~~~~~~~~  228 (264)
                      ..+...+...+.+.
T Consensus       186 ~~~~~~l~~i~~p~  199 (846)
T KOG2066|consen  186 TPTRQRLTNIPPPS  199 (846)
T ss_pred             ccccceeeccCCCC
Confidence            99888776666543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.95  E-value=0.0013  Score=45.08  Aligned_cols=102  Identities=20%  Similarity=0.142  Sum_probs=64.8

Q ss_pred             eeeeEeccCCCCC-eEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           19 VVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        19 v~~~~~~~~~~~g-~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      |.+|.+.+...|| +.|+.||.|..||+|.-+  +.+.++.-+ +.|.+++-... ..++.+-.+|+|.+|+-..  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            6677777766665 689999999999999754  455566544 45666666555 4567888999999998522  223


Q ss_pred             EeecCCeEEEEE-ECCCC---CEEEEeeCCCcE
Q 024676           98 SFEHKHIVRACA-FSEDT---HLLLTGGFEKIL  126 (264)
Q Consensus        98 ~~~~~~~v~~~~-~~~~~---~~l~s~~~d~~i  126 (264)
                      ..+.++.+.+++ ++.++   +-|++|-.+|.+
T Consensus        76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             eeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            333333344443 44432   245566555554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.90  E-value=0.0013  Score=56.91  Aligned_cols=179  Identities=18%  Similarity=0.218  Sum_probs=104.1

Q ss_pred             CeeeeEeccCCCCCeEEEEEe---CC-CCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEE--
Q 024676           18 PVVDLFYSPITPDGFFLVSAS---KD-SSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLW--   88 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s---~d-~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iw--   88 (264)
                      .+..-+|+|   +++.++--+   .. ..+.++++.+++  .+..+.++..   .-+|+||++++ .+..+|+...||  
T Consensus       194 ~~~~p~ws~---~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         194 LILTPAWSP---DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             ceeccccCc---CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEE
Confidence            333445554   555543332   22 246778888875  3455666643   34699999775 577888877776  


Q ss_pred             eCCCCcEEEEeecCCeE-EEEEECCCCCEEEEeeC-CCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           89 DALTGDEKHSFEHKHIV-RACAFSEDTHLLLTGGF-EKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      |+.++.. ..+.+...+ ..=.|+|+|+.++-.+. .|.  |.+++++....  .++....+.-..-.|+|++..++...
T Consensus       268 dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         268 DLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             cCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            6655552 223332222 23468999998887654 344  55556654433  33322223333556788888776665


Q ss_pred             eCCCe--EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe
Q 024676          165 TDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA  205 (264)
Q Consensus       165 ~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  205 (264)
                      ..+|.  |-+.|+.++...+.+........-.+.||++.+...
T Consensus       345 ~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         345 SSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             ccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence            44455  666777766644545444344456788888876554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0034  Score=57.03  Aligned_cols=187  Identities=16%  Similarity=0.211  Sum_probs=108.3

Q ss_pred             EECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCe-EEEEEECCCCCEEEEeeCCC-----cEEEeeCCCCCCCC--
Q 024676           68 CLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHI-VRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPDAPP--  138 (264)
Q Consensus        68 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~l~s~~~d~-----~i~~~d~~~~~~~~--  138 (264)
                      ++++.+..+|-|+.||.|-+.+-.- ..++.+. +... |..+.......+|++.+.|.     .+++|+++..+...  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            5678888889999999877766322 1113322 2333 55554444446777776654     48999987542111  


Q ss_pred             --e---Eecc-----CCCCeEEEEEecCCCeEEEEeeCCCeEEEEE--C-C--CCceeEEecCCCCEEEEEEcCCCcE-E
Q 024676          139 --R---EVGN-----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--A-R--SGKIVQTLETKSPVTSAEVSRDGRY-I  202 (264)
Q Consensus       139 --~---~~~~-----~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd--~-~--~~~~~~~~~~~~~v~~~~~s~~~~~-l  202 (264)
                        .   ....     ...+..+++.+.+ -..++.|..+|.|..+-  + |  .-+.........||+.+++-.+++. +
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence              1   1111     2345666666654 44566778889998873  2 1  1122334456789999999888865 3


Q ss_pred             EEeCCCcEEEEECCCcee-eeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          203 TTADGSSVKFWDANHFGL-VKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       203 ~~~~~~~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ..+....|.+|.+....+ ...... +....+.++.+..+ .|++++. ..+.+|+.+
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~~-e~l~fY~sd  243 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAGS-EFLYFYDSD  243 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEecC-ceEEEEcCC
Confidence            334456899999985542 232332 23334445554323 3555553 458888865

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.83  E-value=0.011  Score=52.53  Aligned_cols=226  Identities=15%  Similarity=0.163  Sum_probs=122.1

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeeeCCcC------CE--EEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCC
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKG------AV--WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH  103 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~------~V--~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  103 (264)
                      ..+..++.++.+.-.|..+|+.+=.+.....      .+  ..+.+. ++..++.++.|+.|.-+|..+|+.+..+....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            3566778889988899999875433322111      11  111111 22566677889999999999999887765433


Q ss_pred             eE---EEEEECC--CCCEEEEee---------CCCcEEEeeCCCCCCCCeEeccCC-------------------CCeE-
Q 024676          104 IV---RACAFSE--DTHLLLTGG---------FEKILRIFDLNRPDAPPREVGNSS-------------------GSIR-  149 (264)
Q Consensus       104 ~v---~~~~~~~--~~~~l~s~~---------~d~~i~~~d~~~~~~~~~~~~~~~-------------------~~i~-  149 (264)
                      .+   ..+.-+|  .+.+++.++         .++.+..+|..+++..........                   ..++ 
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence            21   0011111  124455543         356788888888876655432111                   0111 


Q ss_pred             EEEEecCCCeEEEEeeCCC------------------eEEEEECCCCceeEEecCCCC-E------EEEEEc----CCCc
Q 024676          150 TVAWLHSDQTILSSCTDSG------------------GVRLWDARSGKIVQTLETKSP-V------TSAEVS----RDGR  200 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~------------------~v~iwd~~~~~~~~~~~~~~~-v------~~~~~s----~~~~  200 (264)
                      ..+..+.++.+++.. .++                  .|.-+|.++|+.+..++.... .      ....+.    -++.
T Consensus       221 ~pa~d~~~g~V~vg~-~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~  299 (488)
T cd00216         221 SPTYDPKTNLVYVGT-GNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK  299 (488)
T ss_pred             CeeEeCCCCEEEEEC-CCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence            112222344444443 233                  799999999999877643210 0      000111    1332


Q ss_pred             ---E-EEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE-----------------ecCCCeEEEEEcCc
Q 024676          201 ---Y-ITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-----------------GGEDMWVHVFDFHT  259 (264)
Q Consensus       201 ---~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------gs~d~~v~vwd~~~  259 (264)
                         . +++..++.+.-.|.++++.+=.+......  ....+  +..++.                 ...++.+.-.|+++
T Consensus       300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~--~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t  375 (488)
T cd00216         300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP--MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT  375 (488)
T ss_pred             eeEEEEEECCCceEEEEECCCCcEeeEeEeeccc--cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence               3 33445788999999999876555432111  11111  222221                 12357788888888


Q ss_pred             ceee
Q 024676          260 GEQI  263 (264)
Q Consensus       260 g~~i  263 (264)
                      |+.+
T Consensus       376 G~~~  379 (488)
T cd00216         376 GKVV  379 (488)
T ss_pred             CcEe
Confidence            8764

The alignment model contains an 8-bladed beta-propeller.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.82  E-value=0.0071  Score=57.02  Aligned_cols=197  Identities=16%  Similarity=0.121  Sum_probs=120.8

Q ss_pred             CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEee----CCC----
Q 024676           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD----LNR----  133 (264)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d----~~~----  133 (264)
                      +.|.++.|..+..-++-+..+|.|.+-|..+......-.....|.+.+|+|+.++++-.+.++++-+-.    .=.    
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            578889998887777777778889888887765444444567899999999999988887777665321    100    


Q ss_pred             -------CCCC-------CeEeccCC---------------------CCeEEEEEecCCCeEEEE----eeCCCeEEEEE
Q 024676          134 -------PDAP-------PREVGNSS---------------------GSIRTVAWLHSDQTILSS----CTDSGGVRLWD  174 (264)
Q Consensus       134 -------~~~~-------~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~----~~~d~~v~iwd  174 (264)
                             ++..       -.++....                     ..-..+.|--+++++.++    ..+-+.|++||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                   0000       00111000                     111347787666655442    22227899999


Q ss_pred             CCCCceeEEec-CCCCEEEEEEcCCCcEEEEe----CCCcEEEEECCC---ceeeeEEecCCC-CceeeEcCCCCCEEEE
Q 024676          175 ARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA----DGSSVKFWDANH---FGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (264)
Q Consensus       175 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  245 (264)
                      -+ |..-..-+ ....-.+++|=|.|..+++-    +++.|.++.-..   ++.+-.++.... ...+.|..+ +++|+.
T Consensus       229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~-sdiLAv  306 (1265)
T KOG1920|consen  229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN-SDILAV  306 (1265)
T ss_pred             cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC-CCceee
Confidence            87 43222111 12234578899999888753    345788887432   222222333333 556788774 777777


Q ss_pred             ---ecCCCeEEEEEcCcc
Q 024676          246 ---GGEDMWVHVFDFHTG  260 (264)
Q Consensus       246 ---gs~d~~v~vwd~~~g  260 (264)
                         ..+...|++|-+.+.
T Consensus       307 ~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  307 VTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eecccccceEEEEEecCe
Confidence               778888999987653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.80  E-value=0.011  Score=46.85  Aligned_cols=234  Identities=15%  Similarity=0.071  Sum_probs=121.8

Q ss_pred             eccCCCeeeeEeccCCCC------------------CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEE-EEECCCC
Q 024676           13 HGHSRPVVDLFYSPITPD------------------GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-CCLDANA   73 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~------------------g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~-v~~~~~~   73 (264)
                      ..|++.+.++.+-  +..                  |++++.|.+.+.+.+-+.++|+....|..- +.|.+ -...+++
T Consensus        29 gSHs~~~~avd~~--sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~  105 (354)
T KOG4649|consen   29 GSHSGIVIAVDPQ--SGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDG  105 (354)
T ss_pred             ecCCceEEEecCC--CCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCC
Confidence            4688888776432  222                  677899999999999999999765544321 22221 2346788


Q ss_pred             cEEEEecCCCeEEEEeCCCCcEEEEeecCCeEE-EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec--cCCCCeEE
Q 024676           74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT  150 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~  150 (264)
                      ..+..|+.|++...-|..+..++...+....+. +=+..|-...|+.+...|.+---..+..  ....+.  ...+++..
T Consensus       106 glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~--~~~~~w~~~~~~PiF~  183 (354)
T KOG4649|consen  106 GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY--SSTEFWAATRFGPIFA  183 (354)
T ss_pred             ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC--CcceehhhhcCCcccc
Confidence            899999999999999998887776655443332 2234553333444444444332222221  111111  11223222


Q ss_pred             EEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCE-----------EEEEEcCCCcEEEEeCCCcEEEEECCCce
Q 024676          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV-----------TSAEVSRDGRYITTADGSSVKFWDANHFG  219 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-----------~~~~~s~~~~~l~~~~~~~i~iwd~~~~~  219 (264)
                      --.+ -+..+..++- ||.+.-+| +.|++++.+....+|           ..+.+..++-+.+...-..--+|..+.+.
T Consensus       184 splc-v~~sv~i~~V-dG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~  260 (354)
T KOG4649|consen  184 SPLC-VGSSVIITTV-DGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT  260 (354)
T ss_pred             Ccee-ccceEEEEEe-ccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc
Confidence            1000 0222333333 36666666 555555544333332           23334444444433322233456666654


Q ss_pred             eeeEEecCCCCceeeEcCC---CCCEEEEecCCCeEEEEE
Q 024676          220 LVKGYNMPCNTESASLEPK---LGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~---~~~~~~~gs~d~~v~vwd  256 (264)
                      ..+.|--+.  ..+.++..   +.+++..++.|+.+.+-.
T Consensus       261 t~~vy~~p~--l~F~~h~~~~S~~~ll~~~s~dgkv~il~  298 (354)
T KOG4649|consen  261 TLHVYLSPK--LRFDLHSPGISYPKLLRRSSGDGKVMILM  298 (354)
T ss_pred             EEEEEeCcc--cceeccCCCCcchhhhhhhcCCCcEEEEE
Confidence            444442221  12222211   245677888999888874

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.72  E-value=0.0091  Score=51.95  Aligned_cols=145  Identities=14%  Similarity=0.147  Sum_probs=77.7

Q ss_pred             eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEe-eCCCCC
Q 024676           57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF-DLNRPD  135 (264)
Q Consensus        57 ~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~-d~~~~~  135 (264)
                      +....-....+.++|++++++. ..||.-.|+..........    ..-...+|.+.++ +++-...+.|+++ +... +
T Consensus        28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~-~  100 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN-E  100 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE--
T ss_pred             CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEecCcc-EEEEECCCeEEEEEcCcc-c
Confidence            3333445678999999999876 4577777777444333222    2233456777554 5555557889996 4422 2


Q ss_pred             CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (264)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  215 (264)
                      .......  ...+..+  +. | .++...++ +.|.+||+++++.+..+... +|..+.|+++|.+++...+..+.|++.
T Consensus       101 ~~k~i~~--~~~~~~I--f~-G-~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~il~~  172 (443)
T PF04053_consen  101 VVKSIKL--PFSVEKI--FG-G-NLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYILKY  172 (443)
T ss_dssp             TT-------SS-EEEE--E--S-SSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred             cceEEcC--CcccceE--Ec-C-cEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence            1111111  1122222  32 4 44545454 58999999999999988865 489999999999988766667777654


Q ss_pred             C
Q 024676          216 N  216 (264)
Q Consensus       216 ~  216 (264)
                      .
T Consensus       173 ~  173 (443)
T PF04053_consen  173 N  173 (443)
T ss_dssp             -
T ss_pred             c
Confidence            3

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.68  E-value=0.025  Score=49.24  Aligned_cols=217  Identities=14%  Similarity=0.141  Sum_probs=101.1

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      ....|.++|   +|++++. ..||.-.++.....+....     +.-....|.+.+.+ |.-...++|+|+.-...+...
T Consensus        34 ~p~~ls~np---ngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~y-Av~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   34 YPQSLSHNP---NGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRY-AVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             --SEEEE-T---TSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEE-EEE-TTS-EEEEETTEE-TT-
T ss_pred             CCeeEEECC---CCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccE-EEEECCCeEEEEEcCccccce
Confidence            466899996   8888877 5566767776443333222     22345678886665 444557889997432322222


Q ss_pred             EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 024676           98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (264)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~  177 (264)
                      .+..+..+..+-.   |.+|+..+.+ .|.+||+.+++.. ..+. .. ++..+.|++++..+++.+ . ..+.|++...
T Consensus       104 ~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i-~~i~-v~-~vk~V~Ws~~g~~val~t-~-~~i~il~~~~  174 (443)
T PF04053_consen  104 SIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI-RRID-VS-AVKYVIWSDDGELVALVT-K-DSIYILKYNL  174 (443)
T ss_dssp             ----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EE-EEES-S--E-EEEEE-TTSSEEEEE--S--SEEEEEE-H
T ss_pred             EEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHccee-eEEe-cC-CCcEEEEECCCCEEEEEe-C-CeEEEEEecc
Confidence            3333334444433   7777766544 7999999876532 3332 22 378899998777665554 3 4688876543


Q ss_pred             C-----------ceeEEecC-CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE
Q 024676          178 G-----------KIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (264)
Q Consensus       178 ~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (264)
                      .           ..+..+.. ...|.+..|..+ -++-+... .++.+-......+..+  ....--....++ ...+..
T Consensus       175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~Ge~~~i~~l--d~~~yllgy~~~-~~~ly~  249 (443)
T PF04053_consen  175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKYLVNGETGIIAHL--DKPLYLLGYLPK-ENRLYL  249 (443)
T ss_dssp             HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEEEETTEEEEEEE---SS--EEEEEETT-TTEEEE
T ss_pred             hhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEEEEcCCcceEEEc--CCceEEEEEEcc-CCEEEE
Confidence            3           02222222 457888889877 44434433 7777433222223332  222222223332 234455


Q ss_pred             ecCCCeEEEEEcC
Q 024676          246 GGEDMWVHVFDFH  258 (264)
Q Consensus       246 gs~d~~v~vwd~~  258 (264)
                      .--|+.|..+.+.
T Consensus       250 ~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  250 IDRDGNVISYELD  262 (443)
T ss_dssp             E-TT--EEEEE--
T ss_pred             EECCCCEEEEEEC
Confidence            5555566655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.62  E-value=0.036  Score=48.03  Aligned_cols=233  Identities=16%  Similarity=0.128  Sum_probs=119.9

Q ss_pred             CCCCCeEEEEE-eCCCC----cEEEeCCCCceEEe-eeCCcCCEEEEEECCCCcEEEEecC-----------CCeEEEEe
Q 024676           27 ITPDGFFLVSA-SKDSS----PMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSA-----------DFTAKLWD   89 (264)
Q Consensus        27 ~~~~g~~l~t~-s~d~~----v~i~~~~~~~~~~~-~~~H~~~V~~v~~~~~~~~l~s~s~-----------D~~v~iwd   89 (264)
                      .+|||++||-+ +..|.    +++.|+.+|+.+.. +..-..  ..+.|.++++.++....           ...|+.|+
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            45699888755 44444    88999999986543 332111  23899999766543322           33578888


Q ss_pred             CCCCcE--EEEeec--CCe-EEEEEECCCCCEEEEeeC---C-CcEEEeeCCCC---CCCCeEeccC-CCCeEEEEEecC
Q 024676           90 ALTGDE--KHSFEH--KHI-VRACAFSEDTHLLLTGGF---E-KILRIFDLNRP---DAPPREVGNS-SGSIRTVAWLHS  156 (264)
Q Consensus        90 ~~~~~~--~~~~~~--~~~-v~~~~~~~~~~~l~s~~~---d-~~i~~~d~~~~---~~~~~~~~~~-~~~i~~~~~~~~  156 (264)
                      +.+...  ...++.  ... ...+..++++++++..+.   + ..+.+.++..+   ......+... .+....+... .
T Consensus       209 ~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~  287 (414)
T PF02897_consen  209 LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-G  287 (414)
T ss_dssp             TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-T
T ss_pred             CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-C
Confidence            877642  244432  222 567888999998875432   3 45777787654   2233333332 2333333322 3


Q ss_pred             CCeEEEEe--eCCCeEEEEECCCCce---e-EEecCCC--CEEEEEEcCCCcEEEEeCC--CcEEEEECCCceeeeEEec
Q 024676          157 DQTILSSC--TDSGGVRLWDARSGKI---V-QTLETKS--PVTSAEVSRDGRYITTADG--SSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       157 ~~~~~~~~--~~d~~v~iwd~~~~~~---~-~~~~~~~--~v~~~~~s~~~~~l~~~~~--~~i~iwd~~~~~~~~~~~~  226 (264)
                      +..++.+-  ...+.|--.++.....   . ..+....  .+..+....+..++..-.+  ..|+++++..+........
T Consensus       288 ~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~  367 (414)
T PF02897_consen  288 DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL  367 (414)
T ss_dssp             TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred             CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence            33344442  1235666677776552   2 2223333  3555555433323333334  3689999983444444544


Q ss_pred             CCCCc--eeeEcCCCCCEEEEecC---CCeEEEEEcCccee
Q 024676          227 PCNTE--SASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQ  262 (264)
Q Consensus       227 ~~~~~--~~~~~~~~~~~~~~gs~---d~~v~vwd~~~g~~  262 (264)
                      +....  .....+....++++.+.   =.+++.||+.+|+.
T Consensus       368 p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  368 PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            43322  22222333444444333   45688888888874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.62  E-value=0.0033  Score=57.92  Aligned_cols=141  Identities=15%  Similarity=0.135  Sum_probs=94.4

Q ss_pred             CeEEEEE-eCCCCcEEEeCCCCceEEeeeCCcCC-EEEEEECC-----CCcEEEEecCCCeEEEEeCCCCc--EEE----
Q 024676           31 GFFLVSA-SKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDA-----NALFSASGSADFTAKLWDALTGD--EKH----   97 (264)
Q Consensus        31 g~~l~t~-s~d~~v~i~~~~~~~~~~~~~~H~~~-V~~v~~~~-----~~~~l~s~s~D~~v~iwd~~~~~--~~~----   97 (264)
                      .++|+.- .....+.-.|++.|+.+....-|... |..++-..     +......|-.+..+-.||.+-..  ...    
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 33456777899999999999887654 65554321     12223445567778889976532  211    


Q ss_pred             EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676           98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      .+.......+++...+| +++.|+.+|.||+||- .+......+.....+|..++.+.+|.++|++|.  ..+-++|.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence            22234456666666666 6888999999999994 333333455566789999999999999999985  57888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.60  E-value=0.013  Score=49.73  Aligned_cols=219  Identities=17%  Similarity=0.133  Sum_probs=116.8

Q ss_pred             CCCCeEEEEE---------eCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE
Q 024676           28 TPDGFFLVSA---------SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (264)
Q Consensus        28 ~~~g~~l~t~---------s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~   98 (264)
                      |||+++++..         +..+...++|+++++....... ...+....|+|+++.++-.. ++.+.+++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            3577777664         3344577889998865433332 56778889999999987664 67899999877743321


Q ss_pred             ee-c-----------------CCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           99 FE-H-----------------KHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        99 ~~-~-----------------~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      -. -                 -..-..+.|+|+++.|+..-. +..++.+.+........    .--.+..+.+-..|..
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----~yp~~~~~~YPk~G~~  154 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----QYPEVESIRYPKAGDP  154 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----SS-EEEEEE--BTTS-
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----cCCcccccccCCCCCc
Confidence            11 0                 011246889999999987654 34455444321100000    0012333333222322


Q ss_pred             EEEEeeCCCeEEEEECCCCceeE-E-e----cCCCCEEEEEEcCCCc-EEEEe--CC-C--cEEEEECCCceeeeEEec-
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQ-T-L----ETKSPVTSAEVSRDGR-YITTA--DG-S--SVKFWDANHFGLVKGYNM-  226 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~-~-~----~~~~~v~~~~~s~~~~-~l~~~--~~-~--~i~iwd~~~~~~~~~~~~-  226 (264)
                      .-     .-.+.|+|+++++... . .    .....+..+.|++++. +++.-  .+ +  .+.+.|..++.+-..+.. 
T Consensus       155 np-----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~  229 (353)
T PF00930_consen  155 NP-----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET  229 (353)
T ss_dssp             -------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred             CC-----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence            11     1257778998887532 1 1    1233488899999998 44432  22 2  466778876543222221 


Q ss_pred             -CC---CCceeeEc-CCCCCEEEEecCCCeEEEEEc
Q 024676          227 -PC---NTESASLE-PKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       227 -~~---~~~~~~~~-~~~~~~~~~gs~d~~v~vwd~  257 (264)
                       ..   ......+. ++...++.....||.-+||-+
T Consensus       230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence             11   11233333 555666666668887777743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.50  E-value=0.032  Score=49.11  Aligned_cols=149  Identities=16%  Similarity=0.246  Sum_probs=90.2

Q ss_pred             CCeeeeEeccCCCCCeEEEEEe---CCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC----CcEEEEecCCCeEEEEe
Q 024676           17 RPVVDLFYSPITPDGFFLVSAS---KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN----ALFSASGSADFTAKLWD   89 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s---~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~----~~~l~s~s~D~~v~iwd   89 (264)
                      +||.+|+|-    ||+.++...   ..|.+++=   +-..++.|+    -|..++|.|-    .-.+......+.|-+|-
T Consensus        20 HPvhGlaWT----DGkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   20 HPVHGLAWT----DGKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             ccccceEec----CCCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            589999997    887665543   22232221   112455665    5899999874    32445566778899998


Q ss_pred             CCC-----CcEE--EEeec--CCe--EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           90 ALT-----GDEK--HSFEH--KHI--VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        90 ~~~-----~~~~--~~~~~--~~~--v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      +..     ++.+  ++.+.  .-+  -.+|.|||...+|+.-.....--++++..........-...|-|.|.+|.++|.
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ  168 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence            752     2211  12222  222  357889999988776554444344555433322222224578899999999888


Q ss_pred             eEEEEeeCCCeEEEEECC
Q 024676          159 TILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~  176 (264)
                      .++++.+..=.-.|||-.
T Consensus       169 RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEEeCCeEEEEEecCc
Confidence            776665554567889854

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.49  E-value=0.036  Score=44.70  Aligned_cols=160  Identities=14%  Similarity=0.165  Sum_probs=104.2

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee--eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~--~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .|-+.-|.+|.|+|   +.+.|.+......-.++-...|++++++  .+-.+ -.++++..++.++++-=+++.+.+.-+
T Consensus        82 ~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEE
Confidence            34445599999997   6778888887777778877789888765  33222 245778888999999888998888876


Q ss_pred             CCCcEEE-------Ee---ec-CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEeccCC-------CCeEE
Q 024676           91 LTGDEKH-------SF---EH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSS-------GSIRT  150 (264)
Q Consensus        91 ~~~~~~~-------~~---~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~-------~~i~~  150 (264)
                      .......       .+   .+ +.....++|+|..+.|+.+=..+.+++|.........  .....+.       ..+..
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            5542111       11   12 4467799999999999888888888888765222110  0000111       12444


Q ss_pred             EEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          151 VAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      ..+.+..+++++-+.+++.+--.|.+
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecC
Confidence            55555556666666666666666654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.48  E-value=0.055  Score=46.52  Aligned_cols=188  Identities=16%  Similarity=0.163  Sum_probs=98.5

Q ss_pred             CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee---------cCCeEEEEEECC-----C---CCEEEEee
Q 024676           59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---------HKHIVRACAFSE-----D---THLLLTGG  121 (264)
Q Consensus        59 ~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~~-----~---~~~l~s~~  121 (264)
                      ...++|.+++.+ |=-|++.|..+|.+.|.|++....+..-.         ....++.+.|..     +   +-+|+.|.
T Consensus        84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            357899999987 44589999999999999998876665532         122466666542     2   25677888


Q ss_pred             CCCcEEEeeCC-CCCCCCe--E--e-ccCCCCeEEEEEe-cCC--------------------CeEEEEeeCCCeEEEEE
Q 024676          122 FEKILRIFDLN-RPDAPPR--E--V-GNSSGSIRTVAWL-HSD--------------------QTILSSCTDSGGVRLWD  174 (264)
Q Consensus       122 ~d~~i~~~d~~-~~~~~~~--~--~-~~~~~~i~~~~~~-~~~--------------------~~~~~~~~~d~~v~iwd  174 (264)
                      ..|.+.+|.+. .......  .  . ..+.+++..+.-. .+.                    ..+++.+++ ..+|++.
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe-~~irv~~  241 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE-SDIRVFK  241 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S-SEEEEE-
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc-cceEEEe
Confidence            88999999763 1111111  1  1 1233455444433 110                    134555555 7899999


Q ss_pred             CCCCceeEEecCC-CCEEEEEEc-----CCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCC-----ceeeEcCCCCCE
Q 024676          175 ARSGKIVQTLETK-SPVTSAEVS-----RDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-----ESASLEPKLGNI  242 (264)
Q Consensus       175 ~~~~~~~~~~~~~-~~v~~~~~s-----~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  242 (264)
                      +.+.+..+..... .....+.+-     ..+..|++ ..+|.++++.+...+.+...+.+...     ...++.+ .|+.
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~-~Gdi  320 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR-NGDI  320 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T-TS-E
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC-CCCE
Confidence            9988876544322 223333442     23444444 56899999999999988888775321     2334444 4776


Q ss_pred             EEEecCC
Q 024676          243 FIAGGED  249 (264)
Q Consensus       243 ~~~gs~d  249 (264)
                      |+-.|..
T Consensus       321 ~~~~gps  327 (395)
T PF08596_consen  321 FYWTGPS  327 (395)
T ss_dssp             EEE-SSS
T ss_pred             EEEeCcc
Confidence            6655443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.00079  Score=58.93  Aligned_cols=91  Identities=11%  Similarity=0.043  Sum_probs=71.3

Q ss_pred             CEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEE-EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE
Q 024676           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~  140 (264)
                      .|.-+.|+|.-.++|++-.+|.+-+..++ -..+.+++ +..+++ +++|.|+|++++.|-.||+|++.|++++......
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            45667899999999999999989888877 55566666 666777 9999999999999999999999999988765443


Q ss_pred             eccCCCCeEEEEEe
Q 024676          141 VGNSSGSIRTVAWL  154 (264)
Q Consensus       141 ~~~~~~~i~~~~~~  154 (264)
                      .......+.++-|.
T Consensus       101 ~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 LFSVETDISKGIWD  114 (665)
T ss_pred             ccccccchheeecc
Confidence            33344456666553

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0008  Score=58.91  Aligned_cols=91  Identities=15%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEE-EEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~-~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      .|.-+.|+|.   -..+|++..+|.+.+.-.+ -+.+-++.-|...|. +++|.|||+++|.|=.||+|++-|+.++..+
T Consensus        22 ~i~~~ewnP~---~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPK---MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCc---cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            4667889974   4589999999988777665 444556665555555 9999999999999999999999999998876


Q ss_pred             EE--eecCCeEEEEEECC
Q 024676           97 HS--FEHKHIVRACAFSE  112 (264)
Q Consensus        97 ~~--~~~~~~v~~~~~~~  112 (264)
                      ..  +....+|....|++
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            66  44455666666653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.47  E-value=0.006  Score=56.27  Aligned_cols=136  Identities=16%  Similarity=0.188  Sum_probs=87.9

Q ss_pred             EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCC-------CCEEEEeeCCCcEEEeeCCCCCCCCe--E--eccCC
Q 024676           77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-------THLLLTGGFEKILRIFDLNRPDAPPR--E--VGNSS  145 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~s~~~d~~i~~~d~~~~~~~~~--~--~~~~~  145 (264)
                      ........+.--|++.|+.+..+.....+....+.|+       +.-.+.|-.++.+..||.+-......  +  ....+
T Consensus       498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~  577 (794)
T PF08553_consen  498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK  577 (794)
T ss_pred             ecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence            3444556788889999998888875443333344443       22345677888899999875431111  1  11223


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (264)
Q Consensus       146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  215 (264)
                      ....|++-. .++ .++.|+.+|.||+||- .|+ ..-.+. ...||..+.++.||+++++..+..+-+++.
T Consensus       578 ~~Fs~~aTt-~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  578 NNFSCFATT-EDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CCceEEEec-CCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            345555533 344 4666778899999994 343 222333 368999999999999998877888888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.46  E-value=0.037  Score=43.90  Aligned_cols=133  Identities=12%  Similarity=0.051  Sum_probs=81.3

Q ss_pred             cEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEE
Q 024676           74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  153 (264)
                      .+++.||..+.++--|..+|..+..-.....+.+-+.- -+..++.|+..+.+.+.+.++++..+...-  .+.+.+-+.
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~--~~~vk~~a~  100 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI--LETVKVRAQ  100 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee--hhhhccceE
Confidence            45566777777777777777765554433333322111 256688899999999999988866544432  223333333


Q ss_pred             ecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCE-EEEEEcC-CCcEEEEeCCCc
Q 024676          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV-TSAEVSR-DGRYITTADGSS  209 (264)
Q Consensus       154 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~~~~~~  209 (264)
                      ...+..++-.++.|+.....|.++..++...+....+ .+-+..| ++.+.++...+.
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA  158 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence            3334456666788899999999999998876654332 2334444 444444444443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.005  Score=54.77  Aligned_cols=136  Identities=19%  Similarity=0.230  Sum_probs=93.9

Q ss_pred             CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC
Q 024676           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (264)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~  137 (264)
                      |...|.--+++..+++++-|+.-|.+.+++-..+.......  ....+..+..++++.++++|+..+.|.++.++.....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            55667767888999999999999999999987775333222  2234556778999999999999999999988763322


Q ss_pred             Ce-Ee----ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce-----eEEecCCCCEEEEEEc
Q 024676          138 PR-EV----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-----VQTLETKSPVTSAEVS  196 (264)
Q Consensus       138 ~~-~~----~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~s  196 (264)
                      .. ..    ..|...|++++|++++..++ +|.+.|+|..-.+.+...     ...+...++|-.+.+.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            11 11    22467899999999877655 556669998887776211     1122334556656554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.42  E-value=0.016  Score=39.86  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=62.5

Q ss_pred             CCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC--CCCcee
Q 024676          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP--CNTESA  233 (264)
Q Consensus       156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~  233 (264)
                      ++...|+.+++|..||+|+-.  +.+.++.....+.++.-.+.++|..+..+|+|-+|+-.    .+.+...  ..+.+.
T Consensus        13 dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~----~RlWRiKSK~~~~~~   86 (111)
T PF14783_consen   13 DGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS----QRLWRIKSKNQVTSM   86 (111)
T ss_pred             CCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc----ceeeeeccCCCeEEE
Confidence            445677788999999999754  56777777788999988888888878888999888752    2233332  233333


Q ss_pred             eEcC---CCCCEEEEecCCCeEE
Q 024676          234 SLEP---KLGNIFIAGGEDMWVH  253 (264)
Q Consensus       234 ~~~~---~~~~~~~~gs~d~~v~  253 (264)
                      ....   +.-..|++|=.+|.|-
T Consensus        87 ~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   87 AFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEcCCCCCceEEEEEecCCeEE
Confidence            3322   2224688887777764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.067  Score=45.91  Aligned_cols=194  Identities=16%  Similarity=0.166  Sum_probs=129.4

Q ss_pred             CCe-EEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEec---CCCeEEEEeCCCCcEEEEeecCCe
Q 024676           30 DGF-FLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHI  104 (264)
Q Consensus        30 ~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~  104 (264)
                      ++. ..+....+..+.+.|..+.+...... |.  .-..+++++++..+..+.   .++++-+.|..++...........
T Consensus        84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~  161 (381)
T COG3391          84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT  161 (381)
T ss_pred             CCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence            444 55555556889999977666554443 33  446789999997765443   378899999888887777544332


Q ss_pred             EEEEEECCCCCEEEEee-CCCcEEEeeCCCCCCCC-e---EeccCCCCeEEEEEecCCCeEEEEeeCC--CeEEEEECCC
Q 024676          105 VRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPP-R---EVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDARS  177 (264)
Q Consensus       105 v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~-~---~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~  177 (264)
                      -..++++|+++.++.+. .++.+.+.|........ .   ... .......+.+.+++..+.+....+  +.+...|..+
T Consensus       162 P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~  240 (381)
T COG3391         162 PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT  240 (381)
T ss_pred             cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence            28899999999777665 67899999965443221 0   011 112234566777777666665554  6899999999


Q ss_pred             CceeEE-ecCCC-CEEEEEEcCCCcEEEEe--CCCcEEEEECCCceeeeEEec
Q 024676          178 GKIVQT-LETKS-PVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       178 ~~~~~~-~~~~~-~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~~~  226 (264)
                      +..... ..... ....+.++|+|.++-..  ..+.+.+-|..+......+..
T Consensus       241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            887664 22222 45678899999876443  346888889888776666543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.40  E-value=0.043  Score=47.14  Aligned_cols=201  Identities=14%  Similarity=0.150  Sum_probs=103.6

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--eeC------CcCCEEEEEEC-----CCC-
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEG------HKGAVWSCCLD-----ANA-   73 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--~~~------H~~~V~~v~~~-----~~~-   73 (264)
                      +..+++...++|.+|+.+.    =-++|.|..+|.+.|.|.+....+..  +..      ....|.++.|.     .|+ 
T Consensus        78 P~~l~~~~~g~vtal~~S~----iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSD----IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEE---S-SEEEEEE-B----TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             chhheeccCCcEeEEecCC----CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            3444456689999999984    33889999999999999987665533  222      23456677774     343 


Q ss_pred             --cEEEEecCCCeEEEEeCCC---CcEEEEe-----ecCCeEEEEE-ECCCC--------------------CEEEEeeC
Q 024676           74 --LFSASGSADFTAKLWDALT---GDEKHSF-----EHKHIVRACA-FSEDT--------------------HLLLTGGF  122 (264)
Q Consensus        74 --~~l~s~s~D~~v~iwd~~~---~~~~~~~-----~~~~~v~~~~-~~~~~--------------------~~l~s~~~  122 (264)
                        -++..|...|.+.+|.+.-   +.-...+     .+..++..+. ++.+.                    +-++....
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              4567788889999998752   1111111     2334443332 32220                    22333445


Q ss_pred             CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe----cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC-----CEEEE
Q 024676          123 EKILRIFDLNRPDAPPREVGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-----PVTSA  193 (264)
Q Consensus       123 d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~v~~~  193 (264)
                      +..+|++...+.+...... ...-....+.+.    ......|++-..+|.|+++.+..-+.+.......     .....
T Consensus       234 e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            6789999887654333222 111111222232    1244566666788999999999988887665422     23456


Q ss_pred             EEcCCCcEEEEeCCCcEEEE
Q 024676          194 EVSRDGRYITTADGSSVKFW  213 (264)
Q Consensus       194 ~~s~~~~~l~~~~~~~i~iw  213 (264)
                      .++++|..+.-.+...+.++
T Consensus       313 sis~~Gdi~~~~gpsE~~l~  332 (395)
T PF08596_consen  313 SISRNGDIFYWTGPSEIQLF  332 (395)
T ss_dssp             EE-TTS-EEEE-SSSEEEEE
T ss_pred             EECCCCCEEEEeCcccEEEE
Confidence            67889987765544444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.39  E-value=0.015  Score=52.38  Aligned_cols=210  Identities=11%  Similarity=0.055  Sum_probs=97.1

Q ss_pred             CcEEEeCCCCceEE--eeeCCcCCEEEEEECCCCcEEEEecCC------CeEEEEeCCCCcEEEEeec-CCeE-EEEEEC
Q 024676           42 SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDEKHSFEH-KHIV-RACAFS  111 (264)
Q Consensus        42 ~v~i~~~~~~~~~~--~~~~H~~~V~~v~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~-~~~v-~~~~~~  111 (264)
                      .+..||..++++..  .+...... .+++. .++...+.|+.+      ..+-.||..+..= ...+. ..+- ......
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAV  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEE
Confidence            46678888887643  22111111 22333 245555666643      3466677766531 11111 1110 111122


Q ss_pred             CCCCEEEEeeCCC-----cEEEeeCCCCCCCCeEeccCCCC--eEEEEEecCCCeEEEEeeCC-----------------
Q 024676          112 EDTHLLLTGGFEK-----ILRIFDLNRPDAPPREVGNSSGS--IRTVAWLHSDQTILSSCTDS-----------------  167 (264)
Q Consensus       112 ~~~~~l~s~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~d-----------------  167 (264)
                      -++++.+.||.++     .+..||..+.+..  ...+-..+  -.+++-.  ++.+.+.|+.+                 
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~--~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWK--MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEE--ECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccc
Confidence            3566777777653     3667887654322  21111111  1111212  34444444332                 


Q ss_pred             ------CeEEEEECCCCceeE--EecCCCCEEEEEEcCCCc-EEEEeCC------CcEEEEECCC---ceeeeEEecCCC
Q 024676          168 ------GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGR-YITTADG------SSVKFWDANH---FGLVKGYNMPCN  229 (264)
Q Consensus       168 ------~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~-~l~~~~~------~~i~iwd~~~---~~~~~~~~~~~~  229 (264)
                            ..+..||.++.+-..  .+.....-.+++. -+++ |++++.+      ..+..||.++   ++.+...+.+-.
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS  504 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence                  247778888775322  1111111112222 2454 4444432      2367788875   333332222111


Q ss_pred             CceeeEcCCCCCEEEEecCCC--eEEEEEcCcce
Q 024676          230 TESASLEPKLGNIFIAGGEDM--WVHVFDFHTGE  261 (264)
Q Consensus       230 ~~~~~~~~~~~~~~~~gs~d~--~v~vwd~~~g~  261 (264)
                      ....+..  ++++++.||.|+  .+-.||..+.+
T Consensus       505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             cceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            1112222  588999999888  78888877654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.072  Score=45.71  Aligned_cols=194  Identities=13%  Similarity=0.115  Sum_probs=128.3

Q ss_pred             EEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC---CCcEEEeeCCCCCCCCeE
Q 024676           65 WSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPRE  140 (264)
Q Consensus        65 ~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~  140 (264)
                      ..+++++.+..+ ++...+..|.+.|..+...............+.++|+++.++.+..   ++.+.+.|-.+...... 
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-
Confidence            456778877754 5556678999999887777776665556678899999988877654   67788888765554333 


Q ss_pred             eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE-E----ecCCCCEEEEEEcCCCcEEEEe-C-C--CcEE
Q 024676          141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-T----LETKSPVTSAEVSRDGRYITTA-D-G--SSVK  211 (264)
Q Consensus       141 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~-~----~~~~~~v~~~~~s~~~~~l~~~-~-~--~~i~  211 (264)
                      ...-..+ ..+++.|.+..+.++-..++.|.+.|.++..... .    .........+.++|+|.++-.. . +  +.+.
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence            2221223 6778888888777776778999999987766553 1    2223345668899999754332 2 2  4788


Q ss_pred             EEECCCceeeeE-EecCC-CCceeeEcCCCCCEEEEe-cCCCeEEEEEcCcce
Q 024676          212 FWDANHFGLVKG-YNMPC-NTESASLEPKLGNIFIAG-GEDMWVHVFDFHTGE  261 (264)
Q Consensus       212 iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~g-s~d~~v~vwd~~~g~  261 (264)
                      ..|..++..... +.... .+......|. +..+... +..+.+.+-|..+..
T Consensus       235 ~id~~~~~v~~~~~~~~~~~~~~v~~~p~-g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         235 KIDTATGNVTATDLPVGSGAPRGVAVDPA-GKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             EEeCCCceEEEeccccccCCCCceeECCC-CCEEEEEecCCCeEEEEeCCCCc
Confidence            888888776554 33333 3444566665 5544443 445778888766544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.37  E-value=0.054  Score=44.04  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=89.6

Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE----------
Q 024676           71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----------  140 (264)
Q Consensus        71 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~----------  140 (264)
                      ..+..++.|..+| +.+++...............|..+..-|+-+.++.- .|+.+.++++..-......          
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccc
Confidence            3466777788888 888888433333333444458888888877776654 4599999998654332210          


Q ss_pred             ---eccCCCCeEEEE--EecCCCeEEEEeeCCCeEEEEECCCC-----ceeEEecCCCCEEEEEEcCCCcEEEEeCCCcE
Q 024676          141 ---VGNSSGSIRTVA--WLHSDQTILSSCTDSGGVRLWDARSG-----KIVQTLETKSPVTSAEVSRDGRYITTADGSSV  210 (264)
Q Consensus       141 ---~~~~~~~i~~~~--~~~~~~~~~~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i  210 (264)
                         .......+..++  -.+.+...++.+.. ++|.+|.....     +...++.....+.+++|.++  .+..+..+..
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~--~i~v~~~~~f  159 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGN--KICVGTSKGF  159 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCC--EEEEEeCCce
Confidence               111122333333  12334445555554 68999887642     45566777778889999843  4444435567


Q ss_pred             EEEECCCceeee
Q 024676          211 KFWDANHFGLVK  222 (264)
Q Consensus       211 ~iwd~~~~~~~~  222 (264)
                      .+.|+.++....
T Consensus       160 ~~idl~~~~~~~  171 (275)
T PF00780_consen  160 YLIDLNTGSPSE  171 (275)
T ss_pred             EEEecCCCCceE
Confidence            888888765443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.34  E-value=0.071  Score=44.55  Aligned_cols=208  Identities=19%  Similarity=0.142  Sum_probs=108.9

Q ss_pred             CcEEEeCCCCceEEeeeCCc-CCEEE---EEECCC----CcEEEEecC----------CCeEEEEeCCCC-----c--EE
Q 024676           42 SPMLRNGETGDWIGTFEGHK-GAVWS---CCLDAN----ALFSASGSA----------DFTAKLWDALTG-----D--EK   96 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~-~~V~~---v~~~~~----~~~l~s~s~----------D~~v~iwd~~~~-----~--~~   96 (264)
                      .+++.|..+.+.+.++.-.. ..+.+   +.+..+    ..+++.|..          .|.+.++++...     +  .+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            46777877777665543211 12333   334432    455554421          288999998884     1  22


Q ss_pred             EEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC-CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676           97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      .....+.+|++++-- ++++++  +..+.+.+|++...+ ............+.++...  +..++ .+.....+.++..
T Consensus        83 ~~~~~~g~V~ai~~~-~~~lv~--~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~-vgD~~~sv~~~~~  156 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGRLVV--AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYIL-VGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTEEEE--EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEE-EEESSSSEEEEEE
T ss_pred             EEEeecCcceEhhhh-CCEEEE--eecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEE-EEEcccCEEEEEE
Confidence            334567888887655 444333  334889999997666 3333333333456666544  33444 4454467777644


Q ss_pred             CC-CceeEEe---cCCCCEEEEEEcCCCcEE-EEeCCCcEEEEECCC-----------ceeeeEEecCCCCcee---eEc
Q 024676          176 RS-GKIVQTL---ETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANH-----------FGLVKGYNMPCNTESA---SLE  236 (264)
Q Consensus       176 ~~-~~~~~~~---~~~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~-----------~~~~~~~~~~~~~~~~---~~~  236 (264)
                      +. .+.+..+   .....+.++.+-+++..+ ++..++.+.++....           ...+..|..+....++   .+.
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            32 2222222   123347777777565454 444578888876642           2334555666555554   333


Q ss_pred             CC--CC-----CEEEEecCCCeEEEE
Q 024676          237 PK--LG-----NIFIAGGEDMWVHVF  255 (264)
Q Consensus       237 ~~--~~-----~~~~~gs~d~~v~vw  255 (264)
                      +.  ..     ..++.++.+|.|.+.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            31  11     247788888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.34  E-value=0.00059  Score=36.25  Aligned_cols=34  Identities=41%  Similarity=0.685  Sum_probs=29.4

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN   47 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~   47 (264)
                      .+.+|...|.++.|+|   .+.++++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence            3467999999999996   557899999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.064  Score=43.19  Aligned_cols=195  Identities=15%  Similarity=0.175  Sum_probs=108.0

Q ss_pred             EEEECCCCcE-EEEecCCCe-EEEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEee-----CCCcEEEeeCCCCC
Q 024676           66 SCCLDANALF-SASGSADFT-AKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGG-----FEKILRIFDLNRPD  135 (264)
Q Consensus        66 ~v~~~~~~~~-l~s~s~D~~-v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~-----~d~~i~~~d~~~~~  135 (264)
                      .++++|...+ ++-+-+-|+ ..++|..+.....+..   ..+.--.=.|+|++.+|++.=     ..+.|-+||.+.+.
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            4567776544 445555554 4568887765444432   222233346899999999763     34679999987543


Q ss_pred             CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE--------------------EECCCCceeEEecC-----CCCE
Q 024676          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL--------------------WDARSGKIVQTLET-----KSPV  190 (264)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i--------------------wd~~~~~~~~~~~~-----~~~v  190 (264)
                      ...-++..+.-....+.|.+++..+++..   |.|..                    .|..+|+.+.+...     +-.+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvan---GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN---GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeC---CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            33334444444556678888888766653   33333                    34444444322211     1235


Q ss_pred             EEEEEcCCCcEEEEeC------CCcEEEEECCCceeeeEEecCCC--------CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          191 TSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCN--------TESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       191 ~~~~~s~~~~~l~~~~------~~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      .-++..+||+...+..      |.---+=-.+.++.++-+..+..        ..+++.+-+.+-..+|.-..+..-+||
T Consensus       229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence            5566666666554432      11111111233444444444322        124445544566667777788889999


Q ss_pred             cCcceee
Q 024676          257 FHTGEQI  263 (264)
Q Consensus       257 ~~~g~~i  263 (264)
                      .++|+-+
T Consensus       309 a~tG~vv  315 (366)
T COG3490         309 AATGAVV  315 (366)
T ss_pred             cCCCcEE
Confidence            9999754

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.28  E-value=0.021  Score=45.87  Aligned_cols=182  Identities=15%  Similarity=0.231  Sum_probs=106.2

Q ss_pred             CCCeEEEEEeCCC-----CcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCCcEEEEecCC-------C-----------e
Q 024676           29 PDGFFLVSASKDS-----SPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSAD-------F-----------T   84 (264)
Q Consensus        29 ~~g~~l~t~s~d~-----~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-------~-----------~   84 (264)
                      +||.+|...-.|.     -|-|||..-+ +.+.+|..|.-.-+.+.+.+||..++.+..-       +           +
T Consensus       123 ~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS  202 (366)
T COG3490         123 PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS  202 (366)
T ss_pred             CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc
Confidence            4899988876654     4677887643 4577888887666788999999988765331       1           2


Q ss_pred             EEEEeCCCCcEEE--Eee---cCCeEEEEEECCCCCEEEEeeCCCcEE----Eee-CCCCCCCCeEec-------cCCCC
Q 024676           85 AKLWDALTGDEKH--SFE---HKHIVRACAFSEDTHLLLTGGFEKILR----IFD-LNRPDAPPREVG-------NSSGS  147 (264)
Q Consensus        85 v~iwd~~~~~~~~--~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~----~~d-~~~~~~~~~~~~-------~~~~~  147 (264)
                      +-+-|..+|+.+.  +++   +...++.+...+++..++.|-+.+.-.    +.- ...++. .+.+.       .....
T Consensus       203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~-l~~~~~pee~~~~~anY  281 (366)
T COG3490         203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP-LEFLDLPEEQTAAFANY  281 (366)
T ss_pred             EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc-CcccCCCHHHHHHHHhh
Confidence            2223333333222  111   234588888999998887665444311    000 011111 11110       11234


Q ss_pred             eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEE
Q 024676          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFW  213 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw  213 (264)
                      +-+++.+-.++.+.+++...+..-+||..+|.++..-... ....+....+ -|.+++.++.+.++
T Consensus       282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-daaGva~~~~-gf~vssg~G~~~~~  345 (366)
T COG3490         282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-DAAGVAAAKG-GFAVSSGQGRIIFY  345 (366)
T ss_pred             hhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-ccccceeccC-ceEEecCCceEEec
Confidence            6677777777888888888789999999999987543321 2222333222 35555555666665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.26  E-value=0.13  Score=46.06  Aligned_cols=150  Identities=13%  Similarity=0.064  Sum_probs=85.4

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeee--CCcC--CEEEEEECCCCcEEEEec-----CCCeEEEEeCCCCcEEEEeecC
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEHK  102 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~--~V~~v~~~~~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~  102 (264)
                      ..++.++.|+.+.-.|..+|+.+=.+.  .+..  .+.+--.-.++..++..+     .++.|.-+|.++|+.+..+...
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            356778888888888999998653332  2211  111110111444443322     3688999999999876654210


Q ss_pred             --C------------------------------eE-EEEEECCCCCEEEEeeC-----CC-----------cEEEeeCCC
Q 024676          103 --H------------------------------IV-RACAFSEDTHLLLTGGF-----EK-----------ILRIFDLNR  133 (264)
Q Consensus       103 --~------------------------------~v-~~~~~~~~~~~l~s~~~-----d~-----------~i~~~d~~~  133 (264)
                        .                              .+ ....++|...+++.+..     ++           .+--.|+++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T  280 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT  280 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence              0                              11 13467777777776541     22           355567777


Q ss_pred             CCCCCeEeccCC--------CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCcee
Q 024676          134 PDAPPREVGNSS--------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIV  181 (264)
Q Consensus       134 ~~~~~~~~~~~~--------~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~  181 (264)
                      ++.....+..+.        ....-+..-.+++  .+++.+..+|.+.+.|-++|+.+
T Consensus       281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            777665443221        1111122212333  36777788899999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.25  E-value=0.11  Score=44.99  Aligned_cols=176  Identities=14%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee---cCCeEE-----EEEECCC
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVR-----ACAFSED  113 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~v~-----~~~~~~~  113 (264)
                      .|+||+.. |+.+..+.--.+.+.++.|+.+..++ .-..||+++++|..... ...+.   ....|.     ...+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            47888765 65666554333789999999866554 45679999999986333 11111   111121     1122334


Q ss_pred             CCEEEEeeCCCcEEEee-CCCCCCCCeE---eccCC------CCeEE-EEEecCCCeEEEEeeCCCeEEEEECCCCceeE
Q 024676          114 THLLLTGGFEKILRIFD-LNRPDAPPRE---VGNSS------GSIRT-VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ  182 (264)
Q Consensus       114 ~~~l~s~~~d~~i~~~d-~~~~~~~~~~---~~~~~------~~i~~-~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~  182 (264)
                      |-.+++  .++.+.+.+ .... .....   .....      ..... ..+..+....+.. ..++.+.+.+....+.  
T Consensus       139 GivvLt--~~~~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~-~~g~~i~~i~~~~~~~--  212 (410)
T PF04841_consen  139 GIVVLT--GNNRFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILL-ANGETIYIIDENSFKQ--  212 (410)
T ss_pred             CEEEEC--CCCeEEEEeCcccc-chhhccccCCCcccccccccccccceEeecCcceEEEE-ecCCEEEEEEcccccc--
Confidence            422332  233333322 2211 01011   00000      00111 1122222222222 2334555444332211  


Q ss_pred             EecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC
Q 024676          183 TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       183 ~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~  227 (264)
                       +....++..+++||+|++++. .+++.+.+....-.+..-.+...
T Consensus       213 -i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  213 -IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             -ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence             334468999999999999876 45678888775444444445443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.0023  Score=58.20  Aligned_cols=106  Identities=15%  Similarity=0.253  Sum_probs=75.5

Q ss_pred             EECCCCcEEEEec----CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc
Q 024676           68 CLDANALFSASGS----ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN  143 (264)
Q Consensus        68 ~~~~~~~~l~s~s----~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~  143 (264)
                      .|+|...+++.++    +.|+|-||- .+|++.+...-+-.+.++||+|..-.|+.|-.-+.+.+|..++.+ .......
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~t   99 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVET   99 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-eeeeccC
Confidence            5666666665443    457788875 456655544433345679999998888888777999999876543 2344456


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       144 ~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      |+.++..+.|++++. .+.++..-|.|.+|...
T Consensus       100 h~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  100 HPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            889999999998665 56677777999999765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.018  Score=49.93  Aligned_cols=137  Identities=14%  Similarity=0.169  Sum_probs=90.2

Q ss_pred             EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE--E-----EEecCCCeEEEEeCCCCcE-EEEe-e-----
Q 024676           35 VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF--S-----ASGSADFTAKLWDALTGDE-KHSF-E-----  100 (264)
Q Consensus        35 ~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~--l-----~s~s~D~~v~iwd~~~~~~-~~~~-~-----  100 (264)
                      .++..-..+.=-|++.|+.+.+.+-|.+ |..+.+.|+.++  |     ..|-.|..|.-||.+-... +..+ +     
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            3344444455568888888888777766 777788776542  1     2355577787888764321 1111 1     


Q ss_pred             cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      ......+.+-. .+.+++.||.+|.||+||. .+......++....+|..+..+.++.+++++|-  ..+-+-|+.
T Consensus       429 ~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t~  500 (644)
T KOG2395|consen  429 TKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK--TYLLLIDTL  500 (644)
T ss_pred             cccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc--cEEEEEEEe
Confidence            11223333333 4457889999999999996 455445666677889999999999999999874  577777764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.06  E-value=0.089  Score=47.58  Aligned_cols=212  Identities=14%  Similarity=0.116  Sum_probs=103.4

Q ss_pred             CCeEEEEEeCCC------CcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC------CeEEEEeCCCCcE
Q 024676           30 DGFFLVSASKDS------SPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDE   95 (264)
Q Consensus        30 ~g~~l~t~s~d~------~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D------~~v~iwd~~~~~~   95 (264)
                      .+..++.|+.++      .+..+|..++++...  +...+. -.++++. ++...++|+.|      .++-.||..++. 
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence            456677777774      466788888876533  222222 2333433 34566778888      366677776654 


Q ss_pred             EEEee------cCCeEEEEEECCCCCEEEEeeCCCc-----EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           96 KHSFE------HKHIVRACAFSEDTHLLLTGGFEKI-----LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        96 ~~~~~------~~~~v~~~~~~~~~~~l~s~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ....+      ....+.    .-++.+.+.|+.|+.     +-.||..+.+.....  +.........-..-++.+.+.|
T Consensus       361 W~~~a~M~~~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIG  434 (571)
T ss_pred             eeccCCccCccccceeE----EECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEc
Confidence            11111      111222    225667777888865     445665544332111  1111222222222244555544


Q ss_pred             eCC------CeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcE-EEEeCCC-----cEEEEECCCceeeeEEecCCCC
Q 024676          165 TDS------GGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRY-ITTADGS-----SVKFWDANHFGLVKGYNMPCNT  230 (264)
Q Consensus       165 ~~d------~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~-l~~~~~~-----~i~iwd~~~~~~~~~~~~~~~~  230 (264)
                      +.+      ..+..||..+++....-...  ..-..++.- ++.+ ++++.++     ++..||.++.+-...-......
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r  513 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR  513 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence            422      35788999888754322221  112222222 4444 4444443     3777887765322211121111


Q ss_pred             ceeeEcCCCCCEEEEecCCCe
Q 024676          231 ESASLEPKLGNIFIAGGEDMW  251 (264)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d~~  251 (264)
                      .......-.+..++.||.|+.
T Consensus       514 s~~g~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  514 SAVGVVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             ccccEEEECCEEEEEecccCc
Confidence            111111224788889988764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.05  E-value=0.14  Score=42.58  Aligned_cols=195  Identities=17%  Similarity=0.178  Sum_probs=105.9

Q ss_pred             CCCeEEEEEe--CCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC-CCcEEEEee-----
Q 024676           29 PDGFFLVSAS--KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGDEKHSFE-----  100 (264)
Q Consensus        29 ~~g~~l~t~s--~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~-----  100 (264)
                      .||+++...-  -.-+|.|.|+..++++.++.--.  ...+--.. ..-+.+-+.||++.-..+. .|+....-.     
T Consensus       104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~  180 (342)
T PF06433_consen  104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP  180 (342)
T ss_dssp             TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred             cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence            4777665543  23357778888888877775321  11111122 2346677889988888876 454432211     


Q ss_pred             cCCeE-EEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-cc----------CCCCeEEEEEecCCCeEEEEee---
Q 024676          101 HKHIV-RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GN----------SSGSIRTVAWLHSDQTILSSCT---  165 (264)
Q Consensus       101 ~~~~v-~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~----------~~~~i~~~~~~~~~~~~~~~~~---  165 (264)
                      ..+++ ..-.+...+..++-.+..|.++-.|+.......... .-          ..+...-+++.+..+.+.+--.   
T Consensus       181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~  260 (342)
T PF06433_consen  181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG  260 (342)
T ss_dssp             TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred             CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence            11222 122333444444446778888777765433211110 00          0111122344443333322110   


Q ss_pred             ----CC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCc-EE-EEe-CCCcEEEEECCCceeeeEEec
Q 024676          166 ----DS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YI-TTA-DGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       166 ----~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l-~~~-~~~~i~iwd~~~~~~~~~~~~  226 (264)
                          .|  .+|=++|+.+++.+..+....++.++.++.+.+ +| +.. .++.+.+||..+++.++...-
T Consensus       261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  261 EGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence                11  137777999999998888777888999998875 44 333 468999999999998887753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.96  E-value=0.18  Score=42.14  Aligned_cols=175  Identities=10%  Similarity=0.075  Sum_probs=96.0

Q ss_pred             CeEEEEEeC----------CCCcEEEeCCCC----ceEEee--eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676           31 GFFLVSASK----------DSSPMLRNGETG----DWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (264)
Q Consensus        31 g~~l~t~s~----------d~~v~i~~~~~~----~~~~~~--~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~   94 (264)
                      -.+++.|..          .|.+.++++...    ..+..+  ...+++|.+++-- ++.++++.  .+.+.+|++....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcc
Confidence            467777744          277888888773    112222  2357899998765 44444433  4789999988777


Q ss_pred             -EEEEeec--CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--ccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           95 -EKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        95 -~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                       ......+  ...+.++...  +.+++.|...+.+.++..+.........  ....-.+.++.+..++. .++++..+|.
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gn  195 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGN  195 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSE
T ss_pred             cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCe
Confidence             4443333  3345555444  5588888887788877543321112222  22234567777774444 5666677899


Q ss_pred             EEEEECCC-------Cc----eeEEecCCCCEEEE---EEcC--CCc-------EEEEeCCCcEE
Q 024676          170 VRLWDARS-------GK----IVQTLETKSPVTSA---EVSR--DGR-------YITTADGSSVK  211 (264)
Q Consensus       170 v~iwd~~~-------~~----~~~~~~~~~~v~~~---~~s~--~~~-------~l~~~~~~~i~  211 (264)
                      +.++....       ++    ....+.....++++   .+.|  .+.       .+.++.+|.|-
T Consensus       196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence            99987652       22    23344556678777   4445  221       44455566654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.95  E-value=0.22  Score=43.12  Aligned_cols=192  Identities=14%  Similarity=0.085  Sum_probs=98.0

Q ss_pred             EEEEECCCCcEEE-EecCC----CeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCC-----------cEE
Q 024676           65 WSCCLDANALFSA-SGSAD----FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEK-----------ILR  127 (264)
Q Consensus        65 ~~v~~~~~~~~l~-s~s~D----~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~-----------~i~  127 (264)
                      ....++|++++++ +-+..    ..+++.|+.+++.+... ..... ..+.|.++++.++....+.           .++
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            4578899999875 32333    46999999999755432 22111 2389999988877665443           267


Q ss_pred             EeeCCCCCCCCeEecc-CC-CC-eEEEEEecCCCeEEEEeeCCC---eEEEEECCCC-----ceeEEecCCCCE-EEEEE
Q 024676          128 IFDLNRPDAPPREVGN-SS-GS-IRTVAWLHSDQTILSSCTDSG---GVRLWDARSG-----KIVQTLETKSPV-TSAEV  195 (264)
Q Consensus       128 ~~d~~~~~~~~~~~~~-~~-~~-i~~~~~~~~~~~~~~~~~~d~---~v~iwd~~~~-----~~~~~~~~~~~v-~~~~~  195 (264)
                      .|.+.+.......+.. .. .. ...+..++++.++++......   .+.+.|+..+     ...........+ ..+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            7777655432223222 12 22 456667787787776555433   4888888875     222222222233 33433


Q ss_pred             cCCCcEEEEeC----CCcEEEEECCCcee--ee-EEecCCC-CceeeEcCCCCCEEEEecCCC--eEEEEEcC
Q 024676          196 SRDGRYITTAD----GSSVKFWDANHFGL--VK-GYNMPCN-TESASLEPKLGNIFIAGGEDM--WVHVFDFH  258 (264)
Q Consensus       196 s~~~~~l~~~~----~~~i~iwd~~~~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~~gs~d~--~v~vwd~~  258 (264)
                      . ++.++..++    .+.|.-.++.+...  .. .+.-+.. ..-..+....+.+++..-.|+  .|+++++.
T Consensus       286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            3 554444332    23455556665442  11 1211111 111112221245566655554  45666765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.90  E-value=0.0027  Score=57.78  Aligned_cols=104  Identities=16%  Similarity=0.164  Sum_probs=76.2

Q ss_pred             eEeccCCCCCeEEEEEeC----CCCcEEEeCCCCceEEeeeCCcCC--EEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           22 LFYSPITPDGFFLVSASK----DSSPMLRNGETGDWIGTFEGHKGA--VWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        22 ~~~~~~~~~g~~l~t~s~----d~~v~i~~~~~~~~~~~~~~H~~~--V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      ..|+|..|   +++.++-    -|+|-|+- ++|++.+...   -|  +.+++|+|....++.|-.-|.+.+|...+.+.
T Consensus        21 ~SWHPseP---lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt---~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   21 SSWHPSEP---LFAVASFSPERGGSVTIFA-DTGEPQRDVT---YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccCCCCc---eeEEEEecCCCCceEEEEe-cCCCCCcccc---cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            57887555   6666653    35666663 4455432221   12  35589999988889999999999999877654


Q ss_pred             EEE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676           96 KHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (264)
Q Consensus        96 ~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~  132 (264)
                      -.. ..|+.++..+.|+|+|..++++..-+.+.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            332 3488899999999999999999988999999754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.88  E-value=0.17  Score=40.68  Aligned_cols=129  Identities=18%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             EEEEeecCC--eEEEEEECCCCCEEEEeeCCC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           95 EKHSFEHKH--IVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        95 ~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      .+..++|..  ....+.+..++.++-+.+.-|  .++.+|+.+++.......+..-==..++.. .+..+..+ -.++..
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLT-Wk~~~~  112 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLT-WKEGTG  112 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEE-SSSSEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEE-ecCCeE
Confidence            455666654  466888877888888877655  688899988765433322221111223333 23333333 466899


Q ss_pred             EEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC
Q 024676          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      .+||..+.+.+.++.....--.++  .+++.|..++ ...++++|..+++..+.+...
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence            999999999888776554444444  3555554444 478999999999888877654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.85  E-value=0.33  Score=43.60  Aligned_cols=186  Identities=17%  Similarity=0.163  Sum_probs=104.9

Q ss_pred             cEEEEecCCCeEEEEeCCCCcEEEEeecCCe--EE----------EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe
Q 024676           74 LFSASGSADFTAKLWDALTGDEKHSFEHKHI--VR----------ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--v~----------~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (264)
                      ..++.++.++.|.-.|..+|+.+..+....+  +.          .+.+  .+..++.++.|+.+.-+|.++++......
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            3555566678888899999988877654321  11          1111  23456778889999999988887655432


Q ss_pred             cc-CC-C-CeEEEEEecCCCeEEEEee-----CCCeEEEEECCCCceeEEecCC--C-----------------------
Q 024676          142 GN-SS-G-SIRTVAWLHSDQTILSSCT-----DSGGVRLWDARSGKIVQTLETK--S-----------------------  188 (264)
Q Consensus       142 ~~-~~-~-~i~~~~~~~~~~~~~~~~~-----~d~~v~iwd~~~~~~~~~~~~~--~-----------------------  188 (264)
                      .. .. + .+.+.-... ++.+++..+     .++.|.-+|.++|+.+..+...  .                       
T Consensus       148 ~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             cccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            11 11 0 111100011 334454432     2588999999999987665321  0                       


Q ss_pred             --------CEEEEEEcCCCcE--EEEeC----CC-----------cEEEEECCCceeeeEEecC----------CCCcee
Q 024676          189 --------PVTSAEVSRDGRY--ITTAD----GS-----------SVKFWDANHFGLVKGYNMP----------CNTESA  233 (264)
Q Consensus       189 --------~v~~~~~s~~~~~--l~~~~----~~-----------~i~iwd~~~~~~~~~~~~~----------~~~~~~  233 (264)
                              .....++.|.-.+  +-+++    .+           .|.=.|+++++..=.|+..          ..+.-.
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                    1122344444322  22222    11           3445577777765444431          111112


Q ss_pred             eEcCCCCC---EEEEecCCCeEEEEEcCcceee
Q 024676          234 SLEPKLGN---IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       234 ~~~~~~~~---~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .. +.+|+   .++.+..+|.+++.|.++||.|
T Consensus       307 d~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       307 DL-KKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             Ee-ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            22 22344   8889999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.66  E-value=0.59  Score=43.94  Aligned_cols=240  Identities=13%  Similarity=0.109  Sum_probs=128.3

Q ss_pred             CCCeeeeEeccCCCCCe---EEEEEeCCCCcEEEeC-CCCceEEe--eeCCc--CCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           16 SRPVVDLFYSPITPDGF---FLVSASKDSSPMLRNG-ETGDWIGT--FEGHK--GAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~---~l~t~s~d~~v~i~~~-~~~~~~~~--~~~H~--~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      +.+|.|+.++|.-.+.+   +++.|.++..+++-.. .+...+..  +.+..  -.|...++-.|..+|.++..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            45789999998743334   8999999998766432 23332211  22221  23455667777889999999999888


Q ss_pred             EeC--CCCcE---EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE-EEecCC-CeE
Q 024676           88 WDA--LTGDE---KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-AWLHSD-QTI  160 (264)
Q Consensus        88 wd~--~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~~~  160 (264)
                      +-+  .++..   +...--..|+..-.|+..++.-+-+..|+..-+|--+. .......  ....+..+ .++++. +--
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spl--s~kev~~~c~f~s~a~~d~  686 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPL--SLKEVNHMCPFNSDAYPDS  686 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEecc--chHHhhhhcccccccCCce
Confidence            754  44321   11111234555556665555544555666666665431 1111110  11112222 222222 223


Q ss_pred             EEEeeCCCeEEEEECCCCce--eEEecCCCCEEEEEEcCCCcEEEE-eC-----------C---CcEEEEECCCceeeeE
Q 024676          161 LSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITT-AD-----------G---SSVKFWDANHFGLVKG  223 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~-~~-----------~---~~i~iwd~~~~~~~~~  223 (264)
                      ++.+.. +.+++.-+..-+.  .+++..+.....+++.+...++.. +.           .   ..++++|-.+++.+..
T Consensus       687 l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~  765 (1096)
T KOG1897|consen  687 LASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS  765 (1096)
T ss_pred             EEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence            444444 7888876654433  234555666677777764433322 21           1   1277888888887776


Q ss_pred             EecCCC--Cc---eeeEcCCCCCEEEEecC----------CCeEEEEEcCc
Q 024676          224 YNMPCN--TE---SASLEPKLGNIFIAGGE----------DMWVHVFDFHT  259 (264)
Q Consensus       224 ~~~~~~--~~---~~~~~~~~~~~~~~gs~----------d~~v~vwd~~~  259 (264)
                      +++...  ..   +..+..+.+.+++.|..          .|.|.+|.+..
T Consensus       766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e  816 (1096)
T KOG1897|consen  766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE  816 (1096)
T ss_pred             ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence            665322  22   22344433566666642          46666666554

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.57  E-value=0.41  Score=43.51  Aligned_cols=168  Identities=14%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec------CCCeEEEE--eCCCCcEEEEeecCCeEEEEEEC
Q 024676           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLW--DALTGDEKHSFEHKHIVRACAFS  111 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s------~D~~v~iw--d~~~~~~~~~~~~~~~v~~~~~~  111 (264)
                      +|.+...+...-+.+.-..+....+.+.++++++..++...      .|..-.||  +.. +.. ..+-.......-.|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWs  405 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWS  405 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceEC
Confidence            66654443222222222223334677889999998875443      24444444  542 222 222122235566799


Q ss_pred             CCCCEEEEeeCC------------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE---EECC
Q 024676          112 EDTHLLLTGGFE------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---WDAR  176 (264)
Q Consensus       112 ~~~~~l~s~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i---wd~~  176 (264)
                      |+++.+.+....            +.+.+.+++.++...    ...+.+..+.|++++..++...  +++|.+   -...
T Consensus       406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~  479 (591)
T PRK13616        406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTE  479 (591)
T ss_pred             CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCC
Confidence            998777666432            223333444333211    2355799999999888766554  367777   4444


Q ss_pred             CCce-e---EEec--CCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676          177 SGKI-V---QTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (264)
Q Consensus       177 ~~~~-~---~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  215 (264)
                      .|+. +   ..+.  ....+.++.|.+++.+++...+..-.+|.+
T Consensus       480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v  524 (591)
T PRK13616        480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV  524 (591)
T ss_pred             CCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence            5541 1   1121  123357899999998776554443334443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.48  E-value=0.77  Score=43.07  Aligned_cols=231  Identities=18%  Similarity=0.149  Sum_probs=115.4

Q ss_pred             EeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCc--C------CEEEEEEC----------------CCCcEEEE
Q 024676           23 FYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK--G------AVWSCCLD----------------ANALFSAS   78 (264)
Q Consensus        23 ~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~--~------~V~~v~~~----------------~~~~~l~s   78 (264)
                      ...|+-- +..|..++.++.+.-.|..+|+.+=.+....  .      ..+.+++-                ..+..++.
T Consensus       187 e~TPlvv-gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~  265 (764)
T TIGR03074       187 QATPLKV-GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL  265 (764)
T ss_pred             ccCCEEE-CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence            3444433 3466777888888888999887543332111  0      01223331                12346777


Q ss_pred             ecCCCeEEEEeCCCCcEEEEeecCCeEE-------------EEEECC--CCCEEEEeeC----------CCcEEEeeCCC
Q 024676           79 GSADFTAKLWDALTGDEKHSFEHKHIVR-------------ACAFSE--DTHLLLTGGF----------EKILRIFDLNR  133 (264)
Q Consensus        79 ~s~D~~v~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~s~~~----------d~~i~~~d~~~  133 (264)
                      ++.|+.+.-.|..+|+....+.....|.             ...-.|  .+..++.|+.          ++.|+-+|.++
T Consensus       266 ~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T  345 (764)
T TIGR03074       266 PTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT  345 (764)
T ss_pred             ecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence            8889999999999998887664332221             011122  1345555642          57899999999


Q ss_pred             CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC-eEEEEECCCCceeEEecCCCC-EEEEEEcC-CCcEEEEeCCCcE
Q 024676          134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLETKSP-VTSAEVSR-DGRYITTADGSSV  210 (264)
Q Consensus       134 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~~-v~~~~~s~-~~~~l~~~~~~~i  210 (264)
                      ++............. ..  .+++..+. .++.+. ..-.+|.+.+..........+ ...-.-.| ++.+     .+.|
T Consensus       346 Gkl~W~~~~g~p~~~-~~--~~~g~~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y-----~~sl  416 (764)
T TIGR03074       346 GALVWAWDPGNPDPT-AP--PAPGETYT-RNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKY-----SSSL  416 (764)
T ss_pred             CcEeeEEecCCCCcc-cC--CCCCCEec-cCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccc-----cceE
Confidence            987766542211110 00  11222222 122111 234456665554332211111 00000011 1111     1233


Q ss_pred             EEEECCCceeeeEEe----------cCCCCceeeEcCCCC---CEEEEecCCCeEEEEEcCcceee
Q 024676          211 KFWDANHFGLVKGYN----------MPCNTESASLEPKLG---NIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       211 ~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .=.|.++++..=.|+          .+..+.-..+...+|   ..++.++.+|.+++.|.++|+.+
T Consensus       417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            334444444332222          222232222221134   37899999999999999999976

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.11  Score=45.36  Aligned_cols=139  Identities=14%  Similarity=0.174  Sum_probs=89.1

Q ss_pred             EEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCE-------EEEeeCCCcEEEeeCCCCCCC---CeEecc-
Q 024676           75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL-------LLTGGFEKILRIFDLNRPDAP---PREVGN-  143 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~s~~~d~~i~~~d~~~~~~~---~~~~~~-  143 (264)
                      ++.++..-..+.=-|++.|+.+..+.....|+.+.+.|+.+.       -+.|-.|+.+.-||.+-....   ..+... 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            345555555677778999998888887666888888876421       223667788888997643221   111111 


Q ss_pred             CCC-CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECC
Q 024676          144 SSG-SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (264)
Q Consensus       144 ~~~-~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  216 (264)
                      ..+ .-.|.+ ...+++ ++.++.+|.||+||- .++ ..-.++ ...+|.-+..+.+|+++++..+.++.+-++.
T Consensus       428 ~~k~nFsc~a-TT~sG~-IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFA-TTESGY-IVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccccccceee-ecCCce-EEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            111 223333 233444 556678899999996 443 322333 3578999999999999988878888887764

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.47  E-value=0.63  Score=42.37  Aligned_cols=181  Identities=13%  Similarity=0.078  Sum_probs=89.0

Q ss_pred             CeeeeEeccCCCCCeEEEEEe------CCCCcEEEeCCC-CceEEeeeCCcCCEEEEEECCCCcEEEEecCC-CeEEEE-
Q 024676           18 PVVDLFYSPITPDGFFLVSAS------KDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLW-   88 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s------~d~~v~i~~~~~-~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-~~v~iw-   88 (264)
                      .+...+.+   |||+.++..-      .|..-.+|-... +....-..+.  ....-.|+||+..+.+.+.. ..+++. 
T Consensus       351 ~vsspaiS---pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        351 NITSAALS---RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             CcccceEC---CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            34444444   5888776655      354445554332 2222223333  24556789998777665432 223332 


Q ss_pred             ----------eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEE---eeCCCCCCCC---eEecc-CCCCeEEE
Q 024676           89 ----------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI---FDLNRPDAPP---REVGN-SSGSIRTV  151 (264)
Q Consensus        89 ----------d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~---~d~~~~~~~~---~~~~~-~~~~i~~~  151 (264)
                                ++..++...  .....|..+.|+|+++.++... ++.+.+   -....++...   ..... .......+
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence                      333333222  2345799999999999887655 466655   2222332111   11222 22234678


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeCCC
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGS  208 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~  208 (264)
                      .|.+++..++.+...+..+...++...... .+..   ..++..++-+++ .++++..++
T Consensus       503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~iyv~~~~g  560 (591)
T PRK13616        503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-TVYVTDARA  560 (591)
T ss_pred             eEecCCEEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-eEEEEcCCc
Confidence            899766533322222223433344432221 1122   356777777764 333333333

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.40  E-value=0.45  Score=39.48  Aligned_cols=211  Identities=14%  Similarity=0.125  Sum_probs=115.3

Q ss_pred             EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe---e---cCCeEE
Q 024676           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF---E---HKHIVR  106 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~---~~~~v~  106 (264)
                      ++.+--..+.+.-|+..+++. ..+.... .+.++..-.++..|+++.  .-+.+++..++..+..+   +   .....+
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N  114 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPN  114 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCce-EEEECCC-CcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence            444444455566677766642 2333222 223333333343444443  33667777655442222   1   123456


Q ss_pred             EEEECCCCCEEEEeeC---------CCcEEEeeCC-CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          107 ACAFSEDTHLLLTGGF---------EKILRIFDLN-RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       107 ~~~~~~~~~~l~s~~~---------d~~i~~~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      .+..+|++.+.++...         ...-.+|-+. .+. .......+-.--+.++|+|++..+..+-+..+.|.-|++.
T Consensus       115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            7888999987775433         0011233332 121 1122222122346789999998888887776888888775


Q ss_pred             C--Cce-----eEEec-CCCCEEEEEEcCCCcEEEEe-CC-CcEEEEECCCceeeeEEecC-CCCceeeEcCC-CCCEEE
Q 024676          177 S--GKI-----VQTLE-TKSPVTSAEVSRDGRYITTA-DG-SSVKFWDANHFGLVKGYNMP-CNTESASLEPK-LGNIFI  244 (264)
Q Consensus       177 ~--~~~-----~~~~~-~~~~v~~~~~s~~~~~l~~~-~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~  244 (264)
                      .  +..     ..... .....-.++...+|.+.+++ .+ ..|..|+.. ++.+..+..+ ..+.+.+|-.. ...+++
T Consensus       194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence            2  211     11111 12334556777788876443 33 389999988 8889999988 55566666532 355666


Q ss_pred             EecCC
Q 024676          245 AGGED  249 (264)
Q Consensus       245 ~gs~d  249 (264)
                      ++...
T Consensus       273 Ts~~~  277 (307)
T COG3386         273 TSARS  277 (307)
T ss_pred             EecCC
Confidence            65554

>PHA02713 hypothetical protein; Provisional

Probab=96.40  E-value=0.17  Score=45.80  Aligned_cols=64  Identities=11%  Similarity=-0.048  Sum_probs=32.5

Q ss_pred             CCeEEEEEeCC------CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC-----eEEEEeCCCC
Q 024676           30 DGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALTG   93 (264)
Q Consensus        30 ~g~~l~t~s~d------~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~-----~v~iwd~~~~   93 (264)
                      ++...+.|+.+      ..+..||..++++...-......-.......+++..+.|+.++     ++..||..+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            45555666653      2356678877766421111111111111223466656666653     4778887765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.28  E-value=0.13  Score=46.49  Aligned_cols=107  Identities=18%  Similarity=0.226  Sum_probs=71.9

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe--cCCCeEEEEeeCCCeEEEEECC-----C--
Q 024676          107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL--HSDQTILSSCTDSGGVRLWDAR-----S--  177 (264)
Q Consensus       107 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~d~~v~iwd~~-----~--  177 (264)
                      .+.-+.-++..+.-+....+.+||.+.+.....+.....+.|..++|.  |+++.+++.|.. ..|.++.-.     .  
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~-~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP-HHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC-cEEEEEEccchhhhcCC
Confidence            344455566655555567899999987765555544567889999996  567778888776 789998541     1  


Q ss_pred             --CceeEEec----CCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676          178 --GKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (264)
Q Consensus       178 --~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  215 (264)
                        -..+..+.    ...+|....|-++|.+++++ ++.+.|+|-
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence              11233331    12478889999999887665 457777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.21  E-value=0.018  Score=33.13  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +.....+.......++|. .+++|.|.+||.|.+|++ +++.+
T Consensus         5 ~~~k~l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen    5 LGEKNLPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             ecccCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcCc
Confidence            333344555567788885 789999999999999999 67764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.037  Score=51.89  Aligned_cols=94  Identities=17%  Similarity=0.196  Sum_probs=66.0

Q ss_pred             EEEEeeCCCeEEEEECCCCce--eEEecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCCCCceeeE-
Q 024676          160 ILSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASL-  235 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~-  235 (264)
                      .++.|++.|.+-..|..+.-.  .+.-....+|.+++|+.+|++++.|- +|.|.+||.......+.+.....+....+ 
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            455667778999999887422  22223457899999999999987764 68999999999888888877655544333 


Q ss_pred             ---cCCCCCEEEEecCCCeEEEEE
Q 024676          236 ---EPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       236 ---~~~~~~~~~~gs~d~~v~vwd  256 (264)
                         +. .++.+.++-.-|.  +|.
T Consensus       181 v~~t~-~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  181 VGRTS-QNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEeC-CCcEEEEccCCCc--eEE
Confidence               23 3456677666554  554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.04  E-value=0.39  Score=37.74  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=78.3

Q ss_pred             CCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCc--------CCEEEEEECCCCcEE-EEecCCCeEEEEe--CCCCc-
Q 024676           27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK--------GAVWSCCLDANALFS-ASGSADFTAKLWD--ALTGD-   94 (264)
Q Consensus        27 ~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~--------~~V~~v~~~~~~~~l-~s~s~D~~v~iwd--~~~~~-   94 (264)
                      ..|+|++. .|.+...--+.....+++..-+.+|.        +.-+.++|+.+.+.+ ++-+-+.+|.-||  ..+|. 
T Consensus       116 vdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~  194 (310)
T KOG4499|consen  116 VDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL  194 (310)
T ss_pred             cCCCCcee-eeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc
Confidence            34678773 44432222233333444444444443        222567898887765 5678888999998  55553 


Q ss_pred             ----EEEEeec----CCe-EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC
Q 024676           95 ----EKHSFEH----KHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        95 ----~~~~~~~----~~~-v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  156 (264)
                          .+..++.    .+. .-.++.+.++++.+++-..+++...|..+++...+...+ ...+++++|--.
T Consensus       195 snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgGk  264 (310)
T KOG4499|consen  195 SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGGK  264 (310)
T ss_pred             cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecCC
Confidence                2333332    111 224555778888888888899999999888876555544 667888888643

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.02  E-value=0.023  Score=44.03  Aligned_cols=102  Identities=10%  Similarity=0.113  Sum_probs=65.1

Q ss_pred             CeEEEEEeCCCCcEEEeCCC-CceEEee-eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecC-CeEE
Q 024676           31 GFFLVSASKDSSPMLRNGET-GDWIGTF-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHK-HIVR  106 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~-~~~~~~~-~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~-~~v~  106 (264)
                      +..|+.|+.++.+.+|+... |.....+ .+-+.....+.-..++.+..+++.|+.+|.|++.-++.+-.. .|+ .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            45688999999999987762 1111111 112222233333445668899999999999998877654443 344 4555


Q ss_pred             EEEECCCCCEEEEe--eCCCcEEEeeCC
Q 024676          107 ACAFSEDTHLLLTG--GFEKILRIFDLN  132 (264)
Q Consensus       107 ~~~~~~~~~~l~s~--~~d~~i~~~d~~  132 (264)
                      .....-.++.+..+  |.|..++.|+++
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            55555566677776  778888888875

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.97  E-value=0.93  Score=41.17  Aligned_cols=148  Identities=17%  Similarity=0.118  Sum_probs=73.0

Q ss_pred             CCeEEEEEeCC------CCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCCC-----eEEEEeCCCCcEE
Q 024676           30 DGFFLVSASKD------SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALTGDEK   96 (264)
Q Consensus        30 ~g~~l~t~s~d------~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~   96 (264)
                      +|..-++|+.|      .++.+||..++++...  +.-.+...- ++ .-++..-|.|+.||     ++-.||..+.+=-
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCccc
Confidence            46777888888      3466789998887642  221211111 11 22466678888886     4555665544211


Q ss_pred             EEeecCCeEEEEE-ECCCCCEEEEeeCCCc------EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC-
Q 024676           97 HSFEHKHIVRACA-FSEDTHLLLTGGFEKI------LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-  168 (264)
Q Consensus        97 ~~~~~~~~v~~~~-~~~~~~~l~s~~~d~~------i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-  168 (264)
                      ...+......... ..-++++.+.|+.++.      +..||..+............-.-..++..  ++.+.+.|+.|+ 
T Consensus       410 ~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~  487 (571)
T KOG4441|consen  410 PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGT  487 (571)
T ss_pred             ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCC
Confidence            1111111122211 2235677777775544      45667655433211111111111122322  344555555444 


Q ss_pred             ----eEEEEECCCCcee
Q 024676          169 ----GVRLWDARSGKIV  181 (264)
Q Consensus       169 ----~v~iwd~~~~~~~  181 (264)
                          +|..||.++.+-.
T Consensus       488 ~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  488 SALSSVERYDPETNQWT  504 (571)
T ss_pred             CccceEEEEcCCCCcee
Confidence                3777898887644

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.93  E-value=0.62  Score=36.67  Aligned_cols=211  Identities=15%  Similarity=0.194  Sum_probs=109.6

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceE-EeeeCCcCCEEEEEECCCC---cEEEEecCCCeEEEEeCC--CCcEEEEe-e----
Q 024676           32 FFLVSASKDSSPMLRNGETGDWI-GTFEGHKGAVWSCCLDANA---LFSASGSADFTAKLWDAL--TGDEKHSF-E----  100 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~-~~~~~H~~~V~~v~~~~~~---~~l~s~s~D~~v~iwd~~--~~~~~~~~-~----  100 (264)
                      .+|..-=..+.+.-||..+++.. .++++..  +.++.+--.+   .+.+.++..-.+-=||..  .....+++ +    
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d  105 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD  105 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence            34444444555666888776543 3555431  2233332211   344444444344447733  22333332 1    


Q ss_pred             -cCCeEEEEEECCCCCEEEEeeC-C---------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676          101 -HKHIVRACAFSEDTHLLLTGGF-E---------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus       101 -~~~~v~~~~~~~~~~~l~s~~~-d---------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                       .+...+.-..+|++++. .|.+ |         +.++.|-...   ........-+--+.++|..+...+...-+-+-+
T Consensus       106 ~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             HHhcccccCccCCCCcee-eeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceE
Confidence             22345566789999884 4432 1         2233443221   111111112223556787666666666666678


Q ss_pred             EEEEE--CCCCc-----eeEEecCC----CC-EEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCCc-eeeE
Q 024676          170 VRLWD--ARSGK-----IVQTLETK----SP-VTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTE-SASL  235 (264)
Q Consensus       170 v~iwd--~~~~~-----~~~~~~~~----~~-v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~  235 (264)
                      |.-||  ..+|.     .+..++..    .+ .-..++..+|.+. ++=++++|.-.|..+++.+..+.++.... +.+|
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence            88888  55553     33333221    11 2233445566655 44467899999999999999999986644 4455


Q ss_pred             c-CCCCCEEEEecC
Q 024676          236 E-PKLGNIFIAGGE  248 (264)
Q Consensus       236 ~-~~~~~~~~~gs~  248 (264)
                      . ++..-+++|+..
T Consensus       262 gGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  262 GGKNLDILYVTTAA  275 (310)
T ss_pred             cCCCccEEEEEehh
Confidence            4 323345555544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.88  E-value=0.36  Score=42.20  Aligned_cols=130  Identities=12%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCC--------cEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEE----EE
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANA--------LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRA----CA  109 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~--------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~----~~  109 (264)
                      .+.=-|++-|+.+.+..-|.+.|  |.|.|+.        ..++.-|..+..||=.-..|..+...+....++.    ..
T Consensus       491 kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~  568 (776)
T COG5167         491 KLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSG  568 (776)
T ss_pred             cceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccccc
Confidence            33345667777777777776653  6777753        3344445444444422223333333333333322    22


Q ss_pred             ECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       110 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      ....+.++++++..|-||+||.- +......++.....|-.+....++.+++++|-  ..+-+-|++
T Consensus       569 ~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~  632 (776)
T COG5167         569 MTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP  632 (776)
T ss_pred             ccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence            33456689999999999999953 22233445556678888888889999999985  578888875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.80  E-value=1  Score=38.21  Aligned_cols=227  Identities=19%  Similarity=0.170  Sum_probs=110.9

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-eeeCC----------------cCCEEEEEECCCCcEEEE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGH----------------KGAVWSCCLDANALFSAS   78 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-~~~~H----------------~~~V~~v~~~~~~~~l~s   78 (264)
                      ...+....|+|   +|+++|-.. ++.+.+++..+++.++ +..|-                -+.-.++-|+||+++|+.
T Consensus        42 ~~~~~~~~~sP---~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~  117 (353)
T PF00930_consen   42 PPKLQDAKWSP---DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF  117 (353)
T ss_dssp             ETTBSEEEE-S---SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred             ccccccceeec---CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence            34566788886   888877665 5778888877664332 22220                011245779999999876


Q ss_pred             ecCC-CeEEE-----------------------------------EeCCCCcEE-EEee-----cCCeEEEEEECCCCCE
Q 024676           79 GSAD-FTAKL-----------------------------------WDALTGDEK-HSFE-----HKHIVRACAFSEDTHL  116 (264)
Q Consensus        79 ~s~D-~~v~i-----------------------------------wd~~~~~~~-~~~~-----~~~~v~~~~~~~~~~~  116 (264)
                      ...| ..|+.                                   +|+.+++.. ....     ....+..+.|.++++.
T Consensus       118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE
Confidence            5433 22222                                   222222211 0100     1234677888888873


Q ss_pred             EEEe--eCCCc---EEEeeCCCCCCCCeEeccCCCCe---EEEEEe-cCCCeEEEEeeCCC--eEEEEECCCCceeEEec
Q 024676          117 LLTG--GFEKI---LRIFDLNRPDAPPREVGNSSGSI---RTVAWL-HSDQTILSSCTDSG--GVRLWDARSGKIVQTLE  185 (264)
Q Consensus       117 l~s~--~~d~~---i~~~d~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~  185 (264)
                      ++..  ..+..   +.+.|..++...........+.+   ....+. +++..++.....+|  .|.+.+..++.......
T Consensus       198 l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~  277 (353)
T PF00930_consen  198 LWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS  277 (353)
T ss_dssp             EEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-
T ss_pred             EEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc
Confidence            3332  23322   44566655443222221222222   233444 55666655555666  45566777776443334


Q ss_pred             CCCCEEE-EEEcCCCcEE--EEeCC--C--cEEEEECCCceeeeEEecCCCCc-eeeEcCCCCCEEE-Eec
Q 024676          186 TKSPVTS-AEVSRDGRYI--TTADG--S--SVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFI-AGG  247 (264)
Q Consensus       186 ~~~~v~~-~~~s~~~~~l--~~~~~--~--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~gs  247 (264)
                      +...|.. +.++++++.+  ++..+  .  .+..-++.....++.+....... .+.++|+ +++++ +.+
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd-g~y~v~~~s  347 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD-GKYYVDTYS  347 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT-SSEEEEEEE
T ss_pred             CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC-CCEEEEEEc
Confidence            4455644 6778887543  33321  2  34444555123334443333333 6777775 55444 444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.76  E-value=0.8  Score=36.73  Aligned_cols=195  Identities=11%  Similarity=0.152  Sum_probs=106.1

Q ss_pred             eeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcEEEEeecC--CeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676           56 TFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (264)
Q Consensus        56 ~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~  132 (264)
                      .+.+-...+..++|.|+. .+++....++.|.-.+. +|+.++.++..  .-.-.+++.-++.++++--.++.+.+++++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            455545569999999975 46677777888877775 57777776533  346778887777777765557888888874


Q ss_pred             CCCCC--Ce-----Eec---cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC---CceeEEe-----c----CCCCE
Q 024676          133 RPDAP--PR-----EVG---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---GKIVQTL-----E----TKSPV  190 (264)
Q Consensus       133 ~~~~~--~~-----~~~---~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~~~~-----~----~~~~v  190 (264)
                      .....  ..     ..+   ..+.....++|.+.+..++++. +..-.+|+.++.   ...+...     .    .-..+
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            32211  11     111   1334578899999888777664 445666776653   2222111     1    12357


Q ss_pred             EEEEEcCCC-cEE-EEeCCCcEEEEECCCceeeeEEecCC----------CCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676          191 TSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       191 ~~~~~s~~~-~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                      ..+.++|.. .++ .+..++.+..+| ..++.+..+....          ++.-+++.++ |.++++. +-...++|
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~-G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD-GNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE-TTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC-CCEEEEc-CCceEEEe
Confidence            888999874 444 444567888899 6777777776543          3445667764 6655544 55555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=0.064  Score=50.40  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=65.6

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEee-eC--CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCe---
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTF-EG--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHI---  104 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~-~~--H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~---  104 (264)
                      -.++.|+.-|.+...|...+  ++.+ .+  -.++|.+++|+.+|.+++.|=.+|.|.+||+..+..++.+. +..+   
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            35677777777777665543  1111 11  35799999999999999999999999999999987766653 4444   


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEee
Q 024676          105 VRACAFSEDTHLLLTGGFEKILRIFD  130 (264)
Q Consensus       105 v~~~~~~~~~~~l~s~~~d~~i~~~d  130 (264)
                      |..+.+..++..++++...|.  +|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEE
Confidence            444445555557777666664  454

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.71  E-value=0.64  Score=41.38  Aligned_cols=146  Identities=17%  Similarity=0.220  Sum_probs=81.9

Q ss_pred             CCEEEEEECCCCcEEEEec--CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCC----CCEEEEeeCCCcEEEeeCCC--
Q 024676           62 GAVWSCCLDANALFSASGS--ADFTAKLWDALTGDEKHSFEHKHIVRACAFSED----THLLLTGGFEKILRIFDLNR--  133 (264)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~d~~i~~~d~~~--  133 (264)
                      .+|+.++|......+.|.-  .+|.+++=|   ...+-.|   ..|.++.|.|-    ..-+++.--.+.+.+|.+--  
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            4889999985444445542  233333322   1223333   34889999995    34566777788999998741  


Q ss_pred             CCCCCeEeccCCCC--------eEEEEEecCCCeEEEEeeCCCeEE-EEECCC--CceeEEecCCCCEEEEEEcCCCcEE
Q 024676          134 PDAPPREVGNSSGS--------IRTVAWLHSDQTILSSCTDSGGVR-LWDARS--GKIVQTLETKSPVTSAEVSRDGRYI  202 (264)
Q Consensus       134 ~~~~~~~~~~~~~~--------i~~~~~~~~~~~~~~~~~~d~~v~-iwd~~~--~~~~~~~~~~~~v~~~~~s~~~~~l  202 (264)
                      .+.. ........+        -..+.|.|.... ++.-.. ..+. +.+.+.  .+....++....|.+.+|.+||+.|
T Consensus        94 ~e~~-K~l~sQtcEi~e~~pvLpQGCVWHPk~~i-L~VLT~-~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   94 TERN-KLLMSQTCEIREPFPVLPQGCVWHPKKAI-LTVLTA-RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             cccc-cceeeeeeeccCCcccCCCcccccCCCce-EEEEec-CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence            1110 011011111        123457665544 433333 2243 345443  3444566777889999999999877


Q ss_pred             EEeCCCc--EEEEECC
Q 024676          203 TTADGSS--VKFWDAN  216 (264)
Q Consensus       203 ~~~~~~~--i~iwd~~  216 (264)
                      +.+-+..  -.|||-.
T Consensus       171 VVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEeCCeEEEEEecCc
Confidence            6655444  4689864

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.66  E-value=0.024  Score=43.94  Aligned_cols=67  Identities=16%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             cCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCc-CCEEEEEECCCCcEEEEe--cCCCeEEEEeCCC
Q 024676           26 PITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASG--SADFTAKLWDALT   92 (264)
Q Consensus        26 ~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~-~~V~~v~~~~~~~~l~s~--s~D~~v~iwd~~~   92 (264)
                      |...++.+..++..|+.+|-|+...++.+.....|. .++........+.+++.+  |.|..++.|++..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            444556688999999999999999888887777787 566555555556666666  7777777777654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.65  E-value=1  Score=37.21  Aligned_cols=148  Identities=11%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcE-EEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC-CCC
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPM-LRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-LTG   93 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~-i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~-~~~   93 (264)
                      ...+..+...   +||++++++ ..|.+. -|+.-...+...-+.-...|.++.|.+++.+.+.+ +.+.+++=+. ...
T Consensus       144 ~gs~~~~~r~---~dG~~vavs-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  144 SGSINDITRS---SDGRYVAVS-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             ---EEEEEE----TTS-EEEEE-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             cceeEeEEEC---CCCcEEEEE-CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            3556666555   489887665 455554 46654444444444456789999999998765543 7888888762 222


Q ss_pred             cEEEE--ee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec---cCCCCeEEEEEecCCCeEEEEee
Q 024676           94 DEKHS--FE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        94 ~~~~~--~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      +....  .+   ....+..++|.+++.+.++|+....++-  .+.++ ..+...   .....+..+.|.+++.-+++ + 
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S--~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G-  293 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVS--TDGGK-TWQKDRVGENVPSNLYRIVFVNPDKGFVL-G-  293 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEE--SSTTS-S-EE-GGGTTSSS---EEEEEETTEEEEE---
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEe--CCCCc-cceECccccCCCCceEEEEEcCCCceEEE-C-
Confidence            21111  11   1224788999999888776665433332  22222 233221   23445777888766544443 3 


Q ss_pred             CCCeEEEE
Q 024676          166 DSGGVRLW  173 (264)
Q Consensus       166 ~d~~v~iw  173 (264)
                      .+|.|.=|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            45766543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.60  E-value=2.1  Score=40.48  Aligned_cols=236  Identities=12%  Similarity=0.132  Sum_probs=111.9

Q ss_pred             eEeccCCCCCeEEEEEeCCCCcEEE--eCCCCceEEeeeC--CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           22 LFYSPITPDGFFLVSASKDSSPMLR--NGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        22 ~~~~~~~~~g~~l~t~s~d~~v~i~--~~~~~~~~~~~~~--H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      |-+.....|+.+|.++..||.+..+  |..+|.+...=+.  -..|+.--.|+..+..-+-+..|+-..+|-.+..-...
T Consensus       586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~s  665 (1096)
T KOG1897|consen  586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYS  665 (1096)
T ss_pred             eeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEe
Confidence            4444444568899999999998776  4455543211111  12455445666655443344456666666643332222


Q ss_pred             EeecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee----------
Q 024676           98 SFEHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT----------  165 (264)
Q Consensus        98 ~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------  165 (264)
                      .+..+.--..+.++.+  ...|+++ ..+.+++.-++.-+....+.-+.......+++.+....+.+.+.          
T Consensus       666 pls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~  744 (1096)
T KOG1897|consen  666 PLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYG  744 (1096)
T ss_pred             ccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcC
Confidence            2221111112223221  1234433 33455555543322221111122223334444332222222111          


Q ss_pred             CC---CeEEEEECCCCceeEEecCC--C---CEEEEEEcCC-CcEEEEe-----------CCCcEEEEECCCc---eeee
Q 024676          166 DS---GGVRLWDARSGKIVQTLETK--S---PVTSAEVSRD-GRYITTA-----------DGSSVKFWDANHF---GLVK  222 (264)
Q Consensus       166 ~d---~~v~iwd~~~~~~~~~~~~~--~---~v~~~~~s~~-~~~l~~~-----------~~~~i~iwd~~~~---~~~~  222 (264)
                      ..   ..++++|..|.+.++..+..  .   .+.++.|.-| +.+++.+           ..|.|.++.....   +.+.
T Consensus       745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~  824 (1096)
T KOG1897|consen  745 EEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA  824 (1096)
T ss_pred             CcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee
Confidence            00   13788899998877655432  2   3555557766 5555443           1245666665542   2233


Q ss_pred             EEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          223 GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .......+.+....  .|+++|+  -+..|++|+..+.++
T Consensus       825 e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~e  860 (1096)
T KOG1897|consen  825 ETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERE  860 (1096)
T ss_pred             eeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccce
Confidence            33333333333333  3665544  456799999987744

>PHA03098 kelch-like protein; Provisional

Probab=95.59  E-value=1  Score=40.48  Aligned_cols=184  Identities=13%  Similarity=0.078  Sum_probs=80.3

Q ss_pred             CCcEEEEecCCC------eEEEEeCCCCcEEEEeecC--CeEEEEEECCCCCEEEEeeCC-----CcEEEeeCCCCCCCC
Q 024676           72 NALFSASGSADF------TAKLWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPP  138 (264)
Q Consensus        72 ~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~  138 (264)
                      ++...+.|+.++      .+..||..+..-.......  ..-..+ ..-++++.+.||.+     ..+..||..+.....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGV-TVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceE-EEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            455556665442      4666777665421111111  111111 12256677777765     235567766543221


Q ss_pred             eEeccCCCCeEEEEEecCCCeEEEEeeC-C----CeEEEEECCCCceeEEecCCCC--EEEEEEcCCCcEE-EEeCC---
Q 024676          139 REVGNSSGSIRTVAWLHSDQTILSSCTD-S----GGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYI-TTADG---  207 (264)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~-d----~~v~iwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l-~~~~~---  207 (264)
                      ....+....-.+++.. ++..++.+|.. +    +.+..||+.+++-...-....+  -.+++. .+++++ .++.+   
T Consensus       373 ~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  450 (534)
T PHA03098        373 EPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYID  450 (534)
T ss_pred             CCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCCC
Confidence            1111111111122222 23333444321 1    3578899887653221111111  112222 244443 44321   


Q ss_pred             -----CcEEEEECCCce--eeeEEecCCCCceeeEcCCCCCEEEEecCC-----CeEEEEEcCcc
Q 024676          208 -----SSVKFWDANHFG--LVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTG  260 (264)
Q Consensus       208 -----~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-----~~v~vwd~~~g  260 (264)
                           ..+..||..+.+  .+.....+.........  ++.+++.||.+     ..+.+||..+.
T Consensus       451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                 137788887543  22211111111112221  47788888765     47888887764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.47  E-value=1.4  Score=37.52  Aligned_cols=236  Identities=18%  Similarity=0.233  Sum_probs=108.1

Q ss_pred             eEecc--CCCCC-eEEEEEeCCCCcEEE--eCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           22 LFYSP--ITPDG-FFLVSASKDSSPMLR--NGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        22 ~~~~~--~~~~g-~~l~t~s~d~~v~i~--~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      +.|..  .++|| ++|..+..|+.-.+|  |+.+++..+--.+-........+++++..++--.....++--|+.+.+..
T Consensus        36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~  115 (386)
T PF14583_consen   36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER  115 (386)
T ss_dssp             --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred             eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence            44443  44678 566666668877666  67777654332321122223456777777655555568888999998766


Q ss_pred             EEeecC-CeEEEEEE--CCCCCEEEEee---CCC-------------------cEEEeeCCCCCCCCeEeccCCCCeEEE
Q 024676           97 HSFEHK-HIVRACAF--SEDTHLLLTGG---FEK-------------------ILRIFDLNRPDAPPREVGNSSGSIRTV  151 (264)
Q Consensus        97 ~~~~~~-~~v~~~~~--~~~~~~l~s~~---~d~-------------------~i~~~d~~~~~~~~~~~~~~~~~i~~~  151 (264)
                      ..+..+ ..+-...|  +.++..++-.-   .|.                   .|...|+.+++.  ..+......+..+
T Consensus       116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~~wlgH~  193 (386)
T PF14583_consen  116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDTDWLGHV  193 (386)
T ss_dssp             EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEESS-EEEE
T ss_pred             EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecCccccCc
Confidence            666533 33322333  33454443211   111                   133345555542  2333345567888


Q ss_pred             EEecCCCeEEEEeeCC---C-eEEEEECCC-CceeEEecCCCC---EEEEEEcCCCcEEEE---eC---CCcEEEEECCC
Q 024676          152 AWLHSDQTILSSCTDS---G-GVRLWDARS-GKIVQTLETKSP---VTSAEVSRDGRYITT---AD---GSSVKFWDANH  217 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d---~-~v~iwd~~~-~~~~~~~~~~~~---v~~~~~s~~~~~l~~---~~---~~~i~iwd~~~  217 (264)
                      .++|.++.+++-|.+-   . .-|||=+++ +.....+..+.+   +.-=.|.|||..+.-   ..   +..|.-+|..+
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence            8999888888877641   1 137786543 333333322222   223357899865432   12   23566678887


Q ss_pred             ceeeeEEecCCCCceee-EcCCCCCEEEEecCCC----------------eEEEEEcCccee
Q 024676          218 FGLVKGYNMPCNTESAS-LEPKLGNIFIAGGEDM----------------WVHVFDFHTGEQ  262 (264)
Q Consensus       218 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gs~d~----------------~v~vwd~~~g~~  262 (264)
                      ++.-.....+   .+.- ..+.++++||.=|.|.                .++++++..++.
T Consensus       274 ~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~  332 (386)
T PF14583_consen  274 GERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF  332 (386)
T ss_dssp             --EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred             CCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence            7543323332   1222 2233577777644442                677788776653

>PHA02790 Kelch-like protein; Provisional

Probab=95.46  E-value=1.4  Score=39.24  Aligned_cols=144  Identities=9%  Similarity=0.014  Sum_probs=66.4

Q ss_pred             CCeEEEEEeCCC-----CcEEEeCCCCceEE--eeeCCcCCEEEEEECCCCcEEEEecCC--CeEEEEeCCCCcEEEEee
Q 024676           30 DGFFLVSASKDS-----SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        30 ~g~~l~t~s~d~-----~v~i~~~~~~~~~~--~~~~H~~~V~~v~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~  100 (264)
                      ++...+.|+.++     ++..||..++++..  .+...+... +++ ..++...+.|+.+  .++..||..++.=....+
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            455667777653     35668888887653  222111111 122 2356655666654  357778865542111111


Q ss_pred             cCCeE-EEEEECCCCCEEEEeeCCC---cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          101 HKHIV-RACAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       101 ~~~~v-~~~~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      ...+. ......-++++.+.|+.++   .+-.||.++.+..........-.-.+++ .- ++.+.+.|   |.+.+||.+
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~-~~~IYv~G---G~~e~ydp~  423 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VF-GRRLFLVG---RNAEFYCES  423 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EE-CCEEEEEC---CceEEecCC
Confidence            11111 1111223566667777543   3556776554322111101010111222 12 34454444   457789998


Q ss_pred             CCce
Q 024676          177 SGKI  180 (264)
Q Consensus       177 ~~~~  180 (264)
                      +++-
T Consensus       424 ~~~W  427 (480)
T PHA02790        424 SNTW  427 (480)
T ss_pred             CCcE
Confidence            7754

>PHA03098 kelch-like protein; Provisional

Probab=95.43  E-value=1.3  Score=39.93  Aligned_cols=103  Identities=13%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             CCeEEEEEeCCC------CcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC-----CeEEEEeCCCCcEE
Q 024676           30 DGFFLVSASKDS------SPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGDEK   96 (264)
Q Consensus        30 ~g~~l~t~s~d~------~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~   96 (264)
                      ++...+.|+.++      .+..||..++++...  +...+.....+.  .++...+.|+.+     ..+..||..++.=.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            345556666543      456688888776432  111111111122  245555666655     34667777655311


Q ss_pred             EE--eecCCeEEEEEECCCCCEEEEeeCC------CcEEEeeCCCCC
Q 024676           97 HS--FEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPD  135 (264)
Q Consensus        97 ~~--~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~d~~~~~  135 (264)
                      ..  .+....-.++ ..-++++.+.|+.+      +.+..||..+.+
T Consensus       372 ~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        372 EEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             eCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            11  1111111111 12356666667632      346778876544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.22  E-value=0.08  Score=30.40  Aligned_cols=29  Identities=14%  Similarity=0.023  Sum_probs=27.2

Q ss_pred             CCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           62 GAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      ..|..++|+|+..++|.+..||.|.++.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            56889999999999999999999999998

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.09  E-value=2.4  Score=38.71  Aligned_cols=106  Identities=18%  Similarity=0.335  Sum_probs=66.9

Q ss_pred             EECCCCcEEEEecCCCeEEEEeCCCCcEEE--EeecCCeEEEEEE--CCCCCEEEEeeCCCcEEEeeCC-------CCCC
Q 024676           68 CLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLN-------RPDA  136 (264)
Q Consensus        68 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~~~d~~-------~~~~  136 (264)
                      .-+.-++..+.-+....+.|||...+....  .+....+|..+.|  .|+++.+++.+..+.|.+|.-.       .+..
T Consensus        36 ~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w  115 (631)
T PF12234_consen   36 SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW  115 (631)
T ss_pred             eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence            334445544445556689999998876333  3345778999888  5588999999999999998531       1111


Q ss_pred             -CCeE--eccC-CCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          137 -PPRE--VGNS-SGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       137 -~~~~--~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                       ....  +..+ ..+|....|.+++ .++++ +. +++.|+|-.
T Consensus       116 ~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~-sG-Nqlfv~dk~  156 (631)
T PF12234_consen  116 APIRKIDISSHTPHPIGDSIWLKDG-TLVVG-SG-NQLFVFDKW  156 (631)
T ss_pred             ceeEEEEeecCCCCCccceeEecCC-eEEEE-eC-CEEEEECCC
Confidence             1111  1222 3567888898755 44443 33 689999853

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.99  E-value=2.2  Score=36.97  Aligned_cols=174  Identities=19%  Similarity=0.262  Sum_probs=81.1

Q ss_pred             CCCeEEEEE--eCCC----CcEEEeCCCCceEEeeeCCcC---CEEEEEECCCCcEEEEecC------------------
Q 024676           29 PDGFFLVSA--SKDS----SPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSA------------------   81 (264)
Q Consensus        29 ~~g~~l~t~--s~d~----~v~i~~~~~~~~~~~~~~H~~---~V~~v~~~~~~~~l~s~s~------------------   81 (264)
                      |+|+.++++  ..+|    -+.+.|.++.+.+...+...+   --+.+-+.|....++|...                  
T Consensus       139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~  218 (461)
T PF05694_consen  139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG  218 (461)
T ss_dssp             SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred             CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence            578777776  2222    355667776666555543222   2244566777777776632                  


Q ss_pred             --CCeEEEEeCCCCcEEEEeecCC---eEEEEEE--CCCCCEEEEee-CCCcE-EEeeCCCCCCCCe---Eecc------
Q 024676           82 --DFTAKLWDALTGDEKHSFEHKH---IVRACAF--SEDTHLLLTGG-FEKIL-RIFDLNRPDAPPR---EVGN------  143 (264)
Q Consensus        82 --D~~v~iwd~~~~~~~~~~~~~~---~v~~~~~--~~~~~~l~s~~-~d~~i-~~~d~~~~~~~~~---~~~~------  143 (264)
                        -.++.+||..+.+.++++....   ...-+.|  +|....-++++ ....| ++|.-+.++...+   .+..      
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~  298 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW  298 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence              3689999999999988886432   2333333  55555544443 23333 3333222221111   1111      


Q ss_pred             -----------CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC---ceeEEecC-----------------CCCEEE
Q 024676          144 -----------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLET-----------------KSPVTS  192 (264)
Q Consensus       144 -----------~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~-----------------~~~v~~  192 (264)
                                 ...-++.+..+-++.++.+++--+|.||-||+..-   +.+.++..                 ....+-
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM  378 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM  378 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence                       02346777888899999999999999999998752   22222211                 123467


Q ss_pred             EEEcCCCcEE
Q 024676          193 AEVSRDGRYI  202 (264)
Q Consensus       193 ~~~s~~~~~l  202 (264)
                      ++.|.||+.+
T Consensus       379 vqlS~DGkRl  388 (461)
T PF05694_consen  379 VQLSLDGKRL  388 (461)
T ss_dssp             EEE-TTSSEE
T ss_pred             EEEccCCeEE
Confidence            8899999754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.92  E-value=1.6  Score=35.17  Aligned_cols=180  Identities=14%  Similarity=0.091  Sum_probs=107.7

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCC--CcEEEeCCCCceEEeeeC-CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~--~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~   94 (264)
                      ..-++.|.+   +|.++-+.+.-|  .++.+|..+|+..+...- .+---..++...|..+..| -+++..-+||..+.+
T Consensus        46 FTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT-Wk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   46 FTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT-WKEGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE-SSSSEEEEEETTTTE
T ss_pred             cCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE-ecCCeEEEEccccce
Confidence            344688842   777878887777  467789999987654332 1222234555555555554 678899999999988


Q ss_pred             EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe----ccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      .+.+++....=..++.  +++.|+.......+..+|..+-+......    +..-..++.+.|.  ++.+.+=.-....|
T Consensus       122 ~~~~~~y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I  197 (264)
T PF05096_consen  122 KIGTFPYPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRI  197 (264)
T ss_dssp             EEEEEE-SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEE
T ss_pred             EEEEEecCCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeE
Confidence            8888877766677763  34455555556778888865433221111    1122345666665  45566655555678


Q ss_pred             EEEECCCCceeEEecC----------------CCCEEEEEEcCCC-cEEEEe
Q 024676          171 RLWDARSGKIVQTLET----------------KSPVTSAEVSRDG-RYITTA  205 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~----------------~~~v~~~~~s~~~-~~l~~~  205 (264)
                      -.-|..+|+++..+..                ..-.+.+++.|.. ++++++
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            8889999998876521                1247899998876 455665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02790 Kelch-like protein; Provisional

Probab=94.83  E-value=2.6  Score=37.50  Aligned_cols=182  Identities=10%  Similarity=0.040  Sum_probs=81.8

Q ss_pred             CCcEEEEecCCC-----eEEEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCC--CcEEEeeCCCCCCCCeEec
Q 024676           72 NALFSASGSADF-----TAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        72 ~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~  142 (264)
                      ++...+.|+.++     ++..||..++.-....+  ....-..+ ..-++++.+.|+.+  ..+..||..+.+.  ....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W--~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAW--VNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeE--EECC
Confidence            345556666543     45567766543111111  11111111 12356666777754  3466677654322  2211


Q ss_pred             cCCCCe--EEEEEecCCCeEEEEeeCC--CeEEEEECCCCceeEEecCCCCE-EEEEEcCCCcEEEEeCCCcEEEEECCC
Q 024676          143 NSSGSI--RTVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSPV-TSAEVSRDGRYITTADGSSVKFWDANH  217 (264)
Q Consensus       143 ~~~~~i--~~~~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~i~iwd~~~  217 (264)
                      +-..+.  .+++.. ++..++++|.+.  ..+..||.++.+-...-....+. ......-++++.+.+  +.+.+||.++
T Consensus       348 ~l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~  424 (480)
T PHA02790        348 SLLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESS  424 (480)
T ss_pred             CCCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCC
Confidence            111111  122222 233334444321  34778898876533211111111 112223456655544  3567788765


Q ss_pred             c--eeeeEEecCCCCceeeEcCCCCCEEEEecCC-----CeEEEEEcCcce
Q 024676          218 F--GLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGE  261 (264)
Q Consensus       218 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-----~~v~vwd~~~g~  261 (264)
                      .  +.+.....+......+..  ++++++.||.+     ..|.+||..+++
T Consensus       425 ~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        425 NTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            3  222211111111122222  47888998864     468889887654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.52  E-value=1.7  Score=33.73  Aligned_cols=110  Identities=12%  Similarity=0.192  Sum_probs=64.2

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC--C---eEEEE---ECCC-
Q 024676          107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS--G---GVRLW---DARS-  177 (264)
Q Consensus       107 ~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~---~v~iw---d~~~-  177 (264)
                      .++.+..+.++++ ....+|-+|++...+.........-+.+..+.++..|+++++-=...  .   .+|+|   +... 
T Consensus        22 ~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   22 AVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             eeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            3334444444443 56688999999855554444445568899999998887766532211  2   56775   2220 


Q ss_pred             -Ccee-----------------------EEecCCCCEEEEEEcCC-CcEEEEeCCCcEEEEECCCc
Q 024676          178 -GKIV-----------------------QTLETKSPVTSAEVSRD-GRYITTADGSSVKFWDANHF  218 (264)
Q Consensus       178 -~~~~-----------------------~~~~~~~~v~~~~~s~~-~~~l~~~~~~~i~iwd~~~~  218 (264)
                       .+.+                       -++....++.+++..|- |++++++ ++.+.+|.+...
T Consensus       101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence             1111                       11222346777887775 5666555 568888887544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.52  E-value=0.36  Score=37.94  Aligned_cols=59  Identities=22%  Similarity=0.350  Sum_probs=40.5

Q ss_pred             CCeEEEEeeCCCeEEEEECCCCceeEEe-------c--------CCCCEEEEEEcCCCcEEEEeCCCcEEEEECC
Q 024676          157 DQTILSSCTDSGGVRLWDARSGKIVQTL-------E--------TKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~-------~--------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  216 (264)
                      +.+ +.+...+|.+++||+++++++..-       .        ....|.++.++.+|.-++.-.++....|+..
T Consensus        22 ~~~-Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   22 GSY-LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             CCE-EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            444 445566799999999998865432       1        2245788888888876666555677777753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.12  E-value=0.36  Score=26.50  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=28.1

Q ss_pred             cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEE
Q 024676          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEV  195 (264)
Q Consensus       155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~  195 (264)
                      |+++.++++...++.|.++|..+++.+..+........+.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            34566777777778999999998888777665433334443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=94.08  E-value=4.4  Score=37.13  Aligned_cols=160  Identities=9%  Similarity=0.081  Sum_probs=84.4

Q ss_pred             cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc--EEEEe--ecCC------eEEEEEECCCCCEEEEeeC-C---CcE
Q 024676           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSF--EHKH------IVRACAFSEDTHLLLTGGF-E---KIL  126 (264)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~--~~~~------~v~~~~~~~~~~~l~s~~~-d---~~i  126 (264)
                      .+.|..+.|.+++..++..-.+|.|++||...+.  .....  .+..      .|..........++++-+. .   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            4678889999999999999999999999983221  11111  1111      1222211122345554443 2   236


Q ss_pred             EEeeCCCCCCCCeEec-----cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-------CCEEEEE
Q 024676          127 RIFDLNRPDAPPREVG-----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-------SPVTSAE  194 (264)
Q Consensus       127 ~~~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~v~~~~  194 (264)
                      |++.+........+..     .....-..+++.  .+.+..-  .+++|.+|++...+...++...       ..+.++.
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~  284 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK  284 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence            6777722211122221     111112223333  3433322  4579999999988776665432       1222332


Q ss_pred             EcCCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676          195 VSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       195 ~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  225 (264)
                       +|....+.-+.+..|.+.|+.....+..+.
T Consensus       285 -~~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  285 -PPSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             -cCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence             233334444446799999997655555444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.94  E-value=3.1  Score=34.44  Aligned_cols=158  Identities=13%  Similarity=0.134  Sum_probs=81.0

Q ss_pred             ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC-cEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (264)
Q Consensus        52 ~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d  130 (264)
                      .+.....+-.+.+..+.-++|+.+++.+++-...+-||-... -..........+..+.|.|++.+.+.+ ..+.++.=+
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            355555555678888888999999988888778888885432 233333346789999999998876654 778888776


Q ss_pred             CC-CCC-CCCeEecc-CCCC-eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec----CCCCEEEEEEcCCCcEE
Q 024676          131 LN-RPD-APPREVGN-SSGS-IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYI  202 (264)
Q Consensus       131 ~~-~~~-~~~~~~~~-~~~~-i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l  202 (264)
                      .. ..+ ........ ..+. +..++|.+++.. .+++.. |. -+.....|+-=....    .......+.|.++.+-+
T Consensus       214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~-wa~gg~-G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf  290 (302)
T PF14870_consen  214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI-WAVGGS-GT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF  290 (302)
T ss_dssp             -TTEEEEE---B-TTSS--S-EEEEEESSSS-E-EEEEST-T--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred             CCCCccccccccCCcccCceeeEEEEecCCCCE-EEEeCC-cc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence            21 111 00001111 1222 677888876554 444443 43 344556665322222    23457778887666777


Q ss_pred             EEeCCCcEEEE
Q 024676          203 TTADGSSVKFW  213 (264)
Q Consensus       203 ~~~~~~~i~iw  213 (264)
                      +.++++.|--|
T Consensus       291 ~lG~~G~ll~~  301 (302)
T PF14870_consen  291 VLGQDGVLLRY  301 (302)
T ss_dssp             EE-STTEEEEE
T ss_pred             EECCCcEEEEe
Confidence            77777765433

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.62  E-value=5.7  Score=38.70  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             CCCCEEEEecCCCeEEEEEcCccee
Q 024676          238 KLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       238 ~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ..++.++++.+|+.+..||++.|+.
T Consensus       244 ~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  244 RDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cCCceEEEEEecCCEEeeecCCCce
Confidence            3588999999999999999998754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.25  E-value=0.59  Score=26.15  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=24.4

Q ss_pred             CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCC
Q 024676          146 GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSG  178 (264)
Q Consensus       146 ~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~  178 (264)
                      |.+.++.|+|...  .+|+-.-+.+.|.|+|+|++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4678888986554  46666566689999999953

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.12  E-value=1.5  Score=40.83  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=39.8

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC---------CCce-E--Ee-------e-eCCcCCEEEEEECCC---Cc
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGE---------TGDW-I--GT-------F-EGHKGAVWSCCLDAN---AL   74 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~---------~~~~-~--~~-------~-~~H~~~V~~v~~~~~---~~   74 (264)
                      .|..|..+|   +|++|+..+..+.+.+.-..         .|+. +  ++       | ..+...|..+.|+|.   +.
T Consensus        86 ~v~~i~~n~---~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   86 EVHQISLNP---TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eEEEEEECC---CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            466677774   88888888887765553322         1110 0  11       1 123445666677664   35


Q ss_pred             EEEEecCCCeEEEEeC
Q 024676           75 FSASGSADFTAKLWDA   90 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~   90 (264)
                      +|+.-..|+++|+||+
T Consensus       163 ~l~vLtsdn~lR~y~~  178 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDI  178 (717)
T ss_pred             eEEEEecCCEEEEEec
Confidence            5555556677777775

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.88  E-value=3.4  Score=32.18  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=36.0

Q ss_pred             CeEEEEeeCCCeEEEEECCC--CceeEEecCCCCEEEEEEcCCCcEEEEeC
Q 024676          158 QTILSSCTDSGGVRLWDARS--GKIVQTLETKSPVTSAEVSRDGRYITTAD  206 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  206 (264)
                      +.++++.+. ..|.+||+.+  .+.+..+..-+.|..+.++..|.|+++-+
T Consensus        29 d~Lfva~~g-~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASG-CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCC-CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence            455554444 7899999984  34566777778899999999999998753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.82  E-value=0.75  Score=39.76  Aligned_cols=76  Identities=17%  Similarity=0.200  Sum_probs=51.2

Q ss_pred             CCEEEEEEcCCCcEEEEeCC-CcEEEEECCCceeeeEEecC----CCCceeeEc--------------CCCC-CEEEEec
Q 024676          188 SPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMP----CNTESASLE--------------PKLG-NIFIAGG  247 (264)
Q Consensus       188 ~~v~~~~~s~~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~--------------~~~~-~~~~~gs  247 (264)
                      ..+.++..+|++++++..++ |+|.++|+.++..++.++.-    |........              ++.. -+++.+.
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            34788999999999888765 89999999988777665431    110000000              0001 1455677


Q ss_pred             CCCeEEEEEcCcceee
Q 024676          248 EDMWVHVFDFHTGEQI  263 (264)
Q Consensus       248 ~d~~v~vwd~~~g~~i  263 (264)
                      .=|.|-||.+.+|..+
T Consensus       388 rRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRV  403 (415)
T ss_pred             cCCeEEEEecCCCCEE
Confidence            7899999999998765

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.65  E-value=6.4  Score=34.26  Aligned_cols=172  Identities=15%  Similarity=0.133  Sum_probs=87.9

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-------eeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-------TFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-------~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      +.|.++.|..    ...|+.-..||.++++|.. |+...       ...-..+.+....+..+|-.+.|++.  .+.+-+
T Consensus        81 ~~iv~~~wt~----~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~--~~~~v~  153 (410)
T PF04841_consen   81 GRIVGMGWTD----DEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNN--RFYVVN  153 (410)
T ss_pred             CCEEEEEECC----CCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCC--eEEEEe
Confidence            5777888873    3466788899999999986 44311       11112233333344446655555433  232222


Q ss_pred             CCCCc-EEEEe-e--------cCCe-EE-EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676           90 ALTGD-EKHSF-E--------HKHI-VR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (264)
Q Consensus        90 ~~~~~-~~~~~-~--------~~~~-v~-~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  157 (264)
                      -.... ..... +        +..+ .. ...++.+....+....++.+.+.+-...    ... ...+++..++.+|++
T Consensus       154 n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----~~i-~~~~~i~~iavSpng  228 (410)
T PF04841_consen  154 NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----KQI-DSDGPIIKIAVSPNG  228 (410)
T ss_pred             CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----ccc-cCCCCeEEEEECCCC
Confidence            11111 11111 0        0000 00 0123334444444445555554432211    011 234678899988877


Q ss_pred             CeEEEEeeCCCeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcE
Q 024676          158 QTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRY  201 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~  201 (264)
                      +. ++.-.++|.+.+.+..-.+.+..+...  .+...+.|+.+...
T Consensus       229 ~~-iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav  273 (410)
T PF04841_consen  229 KF-IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV  273 (410)
T ss_pred             CE-EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence            65 455567789999877655555555433  45667778766433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.50  E-value=5.5  Score=33.14  Aligned_cols=132  Identities=15%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             EEEEEECCCCcEEEEecC------C---CeEEEEeCC-CCcEEEEeec-CCeEEEEEECCCCCEEEEeeC-CCcEEEeeC
Q 024676           64 VWSCCLDANALFSASGSA------D---FTAKLWDAL-TGDEKHSFEH-KHIVRACAFSEDTHLLLTGGF-EKILRIFDL  131 (264)
Q Consensus        64 V~~v~~~~~~~~l~s~s~------D---~~v~iwd~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~  131 (264)
                      -+.+...|+|.+-++...      +   ..-.+|.+. .+.....+.. -..-+.++|+|+++.|+.+-. .+.|.-|++
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~  192 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL  192 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence            345667888877554333      1   122445444 3333333322 233578999999988887754 477777776


Q ss_pred             CC--CCCC----CeEeccCCCCeEEEEEecCCCeEEEEeeCCC-eEEEEECCCCceeEEecCC-CCEEEEEEcC
Q 024676          132 NR--PDAP----PREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLETK-SPVTSAEVSR  197 (264)
Q Consensus       132 ~~--~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~  197 (264)
                      ..  +...    ........+..-.++.-. ++.+-+++..+| .|..|+.. ++.+..+... ..+.+++|-.
T Consensus       193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             CcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            52  1111    111111223333333222 344443333333 89999998 8887777654 4566666643

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.38  E-value=0.85  Score=41.21  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=28.6

Q ss_pred             CCEEEEEECC----CCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676           62 GAVWSCCLDA----NALFSASGSADFTAKLWDALTGDEKHSF   99 (264)
Q Consensus        62 ~~V~~v~~~~----~~~~l~s~s~D~~v~iwd~~~~~~~~~~   99 (264)
                      +.+.+++++.    +..++++-+.|+++|+||+.++.++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            4456666766    7789999999999999999999886554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.94  E-value=0.84  Score=25.54  Aligned_cols=31  Identities=19%  Similarity=0.212  Sum_probs=25.2

Q ss_pred             CCEEEEEECCCC---cEEEEecCCCeEEEEeCCC
Q 024676           62 GAVWSCCLDANA---LFSASGSADFTAKLWDALT   92 (264)
Q Consensus        62 ~~V~~v~~~~~~---~~l~s~s~D~~v~iwd~~~   92 (264)
                      ++|+++.|+|..   .+|+-+=.-+.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999999754   4777777778999999885

It contains a characteristic DLL sequence motif.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.89  E-value=0.19  Score=46.73  Aligned_cols=72  Identities=15%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEE-----------EECCCCcEEEEecCCCeEEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC-----------CLDANALFSASGSADFTAKL   87 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v-----------~~~~~~~~l~s~s~D~~v~i   87 (264)
                      +.-|.|.|+.+..-++..+-.++++++-..+.-. ...|.+|...+..+           .++|||+.++.++.||.+++
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF  261 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence            3567788877777788888888888885543321 13355565544332           36899999999999999999


Q ss_pred             EeCC
Q 024676           88 WDAL   91 (264)
Q Consensus        88 wd~~   91 (264)
                      |-+.
T Consensus       262 ~Qiy  265 (1283)
T KOG1916|consen  262 YQIY  265 (1283)
T ss_pred             eeee
Confidence            9763

>PRK10115 protease 2; Provisional

Probab=91.77  E-value=11  Score=35.18  Aligned_cols=235  Identities=13%  Similarity=0.089  Sum_probs=107.0

Q ss_pred             eeeeEeccCCCCCeEEEEEeC-CC----CcEEEeCCCCceEE-eeeCCcCCEEEEEECCCCcEE-EEec-----CCCeEE
Q 024676           19 VVDLFYSPITPDGFFLVSASK-DS----SPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFS-ASGS-----ADFTAK   86 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~-d~----~v~i~~~~~~~~~~-~~~~H~~~V~~v~~~~~~~~l-~s~s-----~D~~v~   86 (264)
                      +..+.++   |||++|+-+.. +|    .+++.++.+|+.+. .+.+   .-..++|.+|+..| ++.-     +...|.
T Consensus       129 l~~~~~S---pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        129 LGGMAIT---PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EeEEEEC---CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            4445554   58887766532 22    36677888776432 2222   12568999888655 4432     224677


Q ss_pred             EEeCCCC--cEEEEeec-CCeEE-EEEECCCCCEEEEee---CCCcEEEeeCCCCCCCCe-EeccCCCCeEEEEEecCCC
Q 024676           87 LWDALTG--DEKHSFEH-KHIVR-ACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        87 iwd~~~~--~~~~~~~~-~~~v~-~~~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~  158 (264)
                      .+++.++  +....++. ..... ....+.++++++..+   .++.+.+++.+....... ......+....+. ...+.
T Consensus       203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  281 (686)
T PRK10115        203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR  281 (686)
T ss_pred             EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence            7888887  33333432 22222 233344777665433   345688888532211112 2222222222222 22233


Q ss_pred             eEEEEeeCCC--eEEEEECC-CCceeEEecC--CCCEEEEEEcCCCcEEEEeCCC--cEEEEECCCceeeeEEecCCC--
Q 024676          159 TILSSCTDSG--GVRLWDAR-SGKIVQTLET--KSPVTSAEVSRDGRYITTADGS--SVKFWDANHFGLVKGYNMPCN--  229 (264)
Q Consensus       159 ~~~~~~~~d~--~v~iwd~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~--~i~iwd~~~~~~~~~~~~~~~--  229 (264)
                      .++.+..+..  .|-..++. .++....+..  ...+..+.++.+..+++...++  .+.++|.... .+..+.....  
T Consensus       282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~  360 (686)
T PRK10115        282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY  360 (686)
T ss_pred             EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence            3343322222  33334544 2322222233  2357777777443333334444  4556665433 2333332111  


Q ss_pred             CceeeEc--CCCCCEEEEecC---CCeEEEEEcCcce
Q 024676          230 TESASLE--PKLGNIFIAGGE---DMWVHVFDFHTGE  261 (264)
Q Consensus       230 ~~~~~~~--~~~~~~~~~gs~---d~~v~vwd~~~g~  261 (264)
                      .......  +..+.++++.++   =..++.+|+.+++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            1111111  222344444333   4556777776654

>PRK13684 Ycf48-like protein; Provisional

Probab=91.61  E-value=7.5  Score=32.77  Aligned_cols=149  Identities=11%  Similarity=0.040  Sum_probs=76.1

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEE-eCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLR-NGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~-~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      ..+.++.+.|   ++.++++ +..|.+..- +.....+...-.+-...+.++.+.+++..++.| ..|.+++=....+..
T Consensus       173 g~~~~i~~~~---~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        173 GVVRNLRRSP---DGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             ceEEEEEECC---CCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            3466777764   6665544 444544321 211123443333345678889999988776654 456665322334432


Q ss_pred             EEEee-----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec---cCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           96 KHSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        96 ~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      .....     ....+..+.+.|++..++ ++.++.+.. ..+.++ ......   ........+.+.+++. .++++. .
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~-tW~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~-~  322 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGK-TWEKDPVGEEVPSNFYKIVFLDPEK-GFVLGQ-R  322 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCC-CCeECCcCCCCCcceEEEEEeCCCc-eEEECC-C
Confidence            22211     123467788888877655 455665442 223222 222221   1122455666665443 455544 4


Q ss_pred             CeEEEEEC
Q 024676          168 GGVRLWDA  175 (264)
Q Consensus       168 ~~v~iwd~  175 (264)
                      |.|.-|+-
T Consensus       323 G~il~~~~  330 (334)
T PRK13684        323 GVLLRYVG  330 (334)
T ss_pred             ceEEEecC
Confidence            88877653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.59  E-value=8.6  Score=33.44  Aligned_cols=53  Identities=11%  Similarity=0.093  Sum_probs=39.2

Q ss_pred             CCeeeeEeccC--------CCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEEC
Q 024676           17 RPVVDLFYSPI--------TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD   70 (264)
Q Consensus        17 ~~v~~~~~~~~--------~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~   70 (264)
                      +.|+++.+-|.        .+|...++.|..+|.+++|.. +|.++..=.-|..+|..+...
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence            57888888876        256789999999999999986 566543323477788777664

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.39  E-value=8.1  Score=33.73  Aligned_cols=138  Identities=11%  Similarity=0.107  Sum_probs=78.2

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--CceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      -+.+.|.    |.+.++-+-..|.+.=|....  ....-.|. .-+++|.++.|++|.+.+|.--.|.+|.+.+....+.
T Consensus        25 sngvFfD----DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~  100 (657)
T KOG2377|consen   25 SNGVFFD----DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS  100 (657)
T ss_pred             ccceeec----cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch
Confidence            3456776    333344444555555554322  12222332 3567999999999999999999999999999855443


Q ss_pred             EEEeec-----CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           96 KHSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        96 ~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      +..+.|     ...+.+.+|..+-.+.+. +. .-+-+|.........+....++..+.=..|+++...++.
T Consensus       101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i-~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  101 QLEYTQECKTKNANILGFCWTSSTEIAFI-TD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL  170 (657)
T ss_pred             hhHHHHHhccCcceeEEEEEecCeeEEEE-ec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence            333322     224777888777443332 22 224455443222223333444555555667766554433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.12  E-value=7.5  Score=31.86  Aligned_cols=159  Identities=9%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE
Q 024676          103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ  182 (264)
Q Consensus       103 ~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~  182 (264)
                      ..+.++.|+|+.+.|++......--++=...|+.........-.-...+.|..++ .++++--.++++.++.+.....+.
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEE
Confidence            3488999999999999887665544442223332212111111223445666433 345555566777777665442211


Q ss_pred             -----Ee-----cC-CCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCce-ee--eEEecC--------CCCceeeEcCCC
Q 024676          183 -----TL-----ET-KSPVTSAEVSRDGR-YITTADGSSVKFWDANHFG-LV--KGYNMP--------CNTESASLEPKL  239 (264)
Q Consensus       183 -----~~-----~~-~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~-~~--~~~~~~--------~~~~~~~~~~~~  239 (264)
                           .+     .. +.....+++.|... ++++-+-.-++||...... .+  +.-..+        .....+.+.+..
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence                 11     11 34467899999875 4555555556666554221 01  000001        111234455666


Q ss_pred             CCEEEEecCCCeEEEEEcCcceee
Q 024676          240 GNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       240 ~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +++++-+.+++.+.-.|. .|+.+
T Consensus       245 ~~LLVLS~ESr~l~Evd~-~G~~~  267 (316)
T COG3204         245 NSLLVLSDESRRLLEVDL-SGEVI  267 (316)
T ss_pred             CcEEEEecCCceEEEEec-CCCee
Confidence            889999999998888886 35543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=90.93  E-value=9.4  Score=32.68  Aligned_cols=229  Identities=15%  Similarity=0.101  Sum_probs=103.1

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEE--CCCCcEEEEe---cCC-------------------CeE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL--DANALFSASG---SAD-------------------FTA   85 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~--~~~~~~l~s~---s~D-------------------~~v   85 (264)
                      +.+.|+--...+.++-.|+.+++....+.-.++.+-...|  ..|...++..   ..|                   ..|
T Consensus        91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i  170 (386)
T PF14583_consen   91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI  170 (386)
T ss_dssp             TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred             CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence            3344443444455666677777644444444444443444  3455554432   111                   223


Q ss_pred             EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-Ee---eCCCc-EEEeeCCCCCCCCeEeccC-CCC-eEEEEEecCCC
Q 024676           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TG---GFEKI-LRIFDLNRPDAPPREVGNS-SGS-IRTVAWLHSDQ  158 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~---~~d~~-i~~~d~~~~~~~~~~~~~~-~~~-i~~~~~~~~~~  158 (264)
                      .--|+.+|+....++...-+..+.++|....++ -|   .++.. -|+|-+++.......+..+ .+. +..=-|.+++.
T Consensus       171 ~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  171 FTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS  250 (386)
T ss_dssp             EEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred             EEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence            334667777666666666778889999554444 44   34443 4777665332222221111 222 23334667776


Q ss_pred             eEEEEee----CCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCC----------------cEEEEECCC
Q 024676          159 TILSSCT----DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGS----------------SVKFWDANH  217 (264)
Q Consensus       159 ~~~~~~~----~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~----------------~i~iwd~~~  217 (264)
                      .+.-.+.    .+..|.-+|+.+++........ +..-+..++||+++++ +.|.                .|.+++++.
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~  329 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA  329 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence            6544222    2335666788888654333322 3445567799999876 2221                456678776


Q ss_pred             ceeeeEEecC-----------CCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          218 FGLVKGYNMP-----------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       218 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      .+........           ..-.-.+|+|++..+|.+..-.|...||=++-
T Consensus       330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred             CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence            5432111110           01123568886445555777788888886543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.84  E-value=4.6  Score=28.93  Aligned_cols=100  Identities=16%  Similarity=0.249  Sum_probs=57.6

Q ss_pred             EEEeeCCCeEEEEECCCC--------ceeEEecCCCCEEEEEEcC---C--CcEEEEeCCCcEEEEECCCceeeeEEecC
Q 024676          161 LSSCTDSGGVRLWDARSG--------KIVQTLETKSPVTSAEVSR---D--GRYITTADGSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~--------~~~~~~~~~~~v~~~~~s~---~--~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      |+.+..-++|.|.+....        ..+..++....|.+++..|   +  ...|..++...+..||+.+..-+-.-.++
T Consensus        13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~~   92 (136)
T PF14781_consen   13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEVP   92 (136)
T ss_pred             EEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhCc
Confidence            333344588999987633        3455566677788886654   2  34667777789999999876543222233


Q ss_pred             CCCceeeE---cCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          228 CNTESASL---EPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       228 ~~~~~~~~---~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      -...++.+   ......+++.| .+-.|.-||. .|++
T Consensus        93 DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~-~G~e  128 (136)
T PF14781_consen   93 DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDY-EGNE  128 (136)
T ss_pred             cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCC-CCcE
Confidence            33333332   12123444444 4667777775 3544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.09  E-value=6.2  Score=36.59  Aligned_cols=113  Identities=12%  Similarity=0.027  Sum_probs=72.0

Q ss_pred             CEEEEEEC--CCCcEEEEecCCCeEEEEeCCC-------C----c---------EEEEeecCCeEEEEEEC--CCCCEEE
Q 024676           63 AVWSCCLD--ANALFSASGSADFTAKLWDALT-------G----D---------EKHSFEHKHIVRACAFS--EDTHLLL  118 (264)
Q Consensus        63 ~V~~v~~~--~~~~~l~s~s~D~~v~iwd~~~-------~----~---------~~~~~~~~~~v~~~~~~--~~~~~l~  118 (264)
                      .|+.+...  .....|+.+.+||.|.+|.+..       .    .         +...+......++++++  ...+++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            35555443  2456788899999999997521       0    0         11222345568899998  8888898


Q ss_pred             EeeCCCcEEEeeCCCC--CCCCeEeccCCCCeEEEEEecCC----Ce-EEEEeeCCCeEEEEEC
Q 024676          119 TGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHSD----QT-ILSSCTDSGGVRLWDA  175 (264)
Q Consensus       119 s~~~d~~i~~~d~~~~--~~~~~~~~~~~~~i~~~~~~~~~----~~-~~~~~~~d~~v~iwd~  175 (264)
                      +++....|.+|-....  +........+...|.+++|.+.+    ++ .+++++-.|.+-+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888865431  11111111244568888888654    22 5666777788888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.00  E-value=5.7  Score=30.89  Aligned_cols=126  Identities=13%  Similarity=0.169  Sum_probs=66.7

Q ss_pred             EEEEeecCCe--EEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe-EEEEeeCCCe
Q 024676           95 EKHSFEHKHI--VRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT-ILSSCTDSGG  169 (264)
Q Consensus        95 ~~~~~~~~~~--v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~d~~  169 (264)
                      .+++++|...  -..+.+. +++++.+.+.  ...|+.||+++++....+.... ..+..--...-+.. +..+ -.+|.
T Consensus        36 vi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LT-w~egv  112 (262)
T COG3823          36 VIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLT-WKEGV  112 (262)
T ss_pred             EEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEE-eccce
Confidence            3445555432  2334433 3466776664  3569999998765443332221 11100000111222 2333 35688


Q ss_pred             EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEe
Q 024676          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~  225 (264)
                      -.++|.++.+++..+..+..--.  ...|++-+..++ ..++++-|.+++...++.+
T Consensus       113 af~~d~~t~~~lg~~~y~GeGWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~  167 (262)
T COG3823         113 AFKYDADTLEELGRFSYEGEGWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQ  167 (262)
T ss_pred             eEEEChHHhhhhcccccCCccee--eecCCcceEeeCCceEEEecCHHHhhhcceEE
Confidence            89999999998876655443333  334554444444 3578888877766555554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.70  E-value=10  Score=31.28  Aligned_cols=198  Identities=12%  Similarity=0.099  Sum_probs=106.0

Q ss_pred             EEEEECCCCcEEEEecCCCeEEEEeCC------CCc-EEEEee------cCCeEEEEEECCCC------------CEEEE
Q 024676           65 WSCCLDANALFSASGSADFTAKLWDAL------TGD-EKHSFE------HKHIVRACAFSEDT------------HLLLT  119 (264)
Q Consensus        65 ~~v~~~~~~~~l~s~s~D~~v~iwd~~------~~~-~~~~~~------~~~~v~~~~~~~~~------------~~l~s  119 (264)
                      |.++++|.+.+-++....++..+||..      ... ...+++      .....+.+.|+...            ..++.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            779999999887888888899999986      121 222322      12245566665432            22567


Q ss_pred             eeCCCcEEEeeCCCCCC----CCeEecc-CCCCeEE-EEEe--cCCCeEEEEeeCCCeEEEEECCCCcee--EEe-----
Q 024676          120 GGFEKILRIFDLNRPDA----PPREVGN-SSGSIRT-VAWL--HSDQTILSSCTDSGGVRLWDARSGKIV--QTL-----  184 (264)
Q Consensus       120 ~~~d~~i~~~d~~~~~~----~~~~~~~-~~~~i~~-~~~~--~~~~~~~~~~~~d~~v~iwd~~~~~~~--~~~-----  184 (264)
                      ++.|++|.-|.-.-...    ....... ..+.+.. +++-  ..+..+.++-...++|.+||-.=.+..  ..+     
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i  185 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL  185 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence            88999999998422111    1111111 1233322 3332  234567777777899999986533221  011     


Q ss_pred             cCCCCEEEEEE------------cCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCCCc--------eeeEcCCCCCEE
Q 024676          185 ETKSPVTSAEV------------SRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCNTE--------SASLEPKLGNIF  243 (264)
Q Consensus       185 ~~~~~v~~~~~------------s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  243 (264)
                      ........++.            .++.+- +....-+.|-++|.. +..++.+.......        ...|-.-.+++|
T Consensus       186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL  264 (336)
T TIGR03118       186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALL  264 (336)
T ss_pred             CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence            11111111211            122211 111112467888864 44566664322111        112223347788


Q ss_pred             EEecCCCeEEEEEcCcceee
Q 024676          244 IAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +.-=.||+|..||..+|+-+
T Consensus       265 VGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       265 VGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             EeecCCceeEEecCCCCcee
Confidence            87666999999999888754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.52  E-value=12  Score=31.88  Aligned_cols=141  Identities=15%  Similarity=0.182  Sum_probs=71.6

Q ss_pred             EEEEEECCCCcEEEEec-----------CCC-eEEEEeCCC--Cc--EEEEee-cCCeEEEEEECCCCCEEEEeeCCCcE
Q 024676           64 VWSCCLDANALFSASGS-----------ADF-TAKLWDALT--GD--EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKIL  126 (264)
Q Consensus        64 V~~v~~~~~~~~l~s~s-----------~D~-~v~iwd~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i  126 (264)
                      ...++|.+++.+.++-.           ..+ .|.+++-.+  +.  ....+. .-...+.+++.+++ +++ +......
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence            35678888887766532           122 566665432  22  122332 22345778888888 444 4444444


Q ss_pred             EEeeCCCCC-C--CCe-E---ecc----CCCCeEEEEEecCCCeEEEEeeC------------------CCeEEEEECCC
Q 024676          127 RIFDLNRPD-A--PPR-E---VGN----SSGSIRTVAWLHSDQTILSSCTD------------------SGGVRLWDARS  177 (264)
Q Consensus       127 ~~~d~~~~~-~--~~~-~---~~~----~~~~i~~~~~~~~~~~~~~~~~~------------------d~~v~iwd~~~  177 (264)
                      ++.|.+... .  ..+ .   +..    +......+++.+++..+++.++.                  .+.|.-+|..+
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            444543211 1  111 1   111    11235567777766544544421                  13455556665


Q ss_pred             CceeEEecCCCCEEEEEEcCCCcEEEEeC
Q 024676          178 GKIVQTLETKSPVTSAEVSRDGRYITTAD  206 (264)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  206 (264)
                      ++....-........++|+|+|.++++-.
T Consensus       174 ~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       174 GKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CeEEEEecCcCCCccceECCCCCEEEEcc
Confidence            54322112334466789999998877643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.41  E-value=3.6  Score=32.35  Aligned_cols=62  Identities=10%  Similarity=0.143  Sum_probs=39.0

Q ss_pred             ECCCCcEEEEecCCCeEEEEeCCCCcEEEEe---------------ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC
Q 024676           69 LDANALFSASGSADFTAKLWDALTGDEKHSF---------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (264)
Q Consensus        69 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~  131 (264)
                      +..++.+++.-..+|.+.+||+.+++.....               .....|..+.++.+|.-+++-+ ++....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            4456777888888999999999887643322               1223456666666665555433 345566654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.04  E-value=2.4  Score=23.01  Aligned_cols=38  Identities=13%  Similarity=0.129  Sum_probs=26.5

Q ss_pred             CCCcEE-EEe-CCCcEEEEECCCceeeeEEecCCCCceee
Q 024676          197 RDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMPCNTESAS  234 (264)
Q Consensus       197 ~~~~~l-~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (264)
                      |+++++ ++. .++.|.++|..+++.+..+.....+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~   40 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA   40 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence            566654 333 35799999999998888887765555443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.60  E-value=22  Score=33.66  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC-------CeEEEEEec----------------CCCeEEEEeeCCCeE
Q 024676          114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-------SIRTVAWLH----------------SDQTILSSCTDSGGV  170 (264)
Q Consensus       114 ~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-------~i~~~~~~~----------------~~~~~~~~~~~d~~v  170 (264)
                      +..++.++.++.+.-.|..+++...+.......       ....+++..                .+..++ .++.|+.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~-~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII-LPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE-EecCCCeE
Confidence            446666777777777777766655443221110       011222221                122344 44567999


Q ss_pred             EEEECCCCceeEEecCCCCEE-------------EEEEcC---CCcEEEEeC----------CCcEEEEECCCceeeeEE
Q 024676          171 RLWDARSGKIVQTLETKSPVT-------------SAEVSR---DGRYITTAD----------GSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~-------------~~~~s~---~~~~l~~~~----------~~~i~iwd~~~~~~~~~~  224 (264)
                      .-.|.++|+....+..+..+.             ...-+|   ++..++++.          ++.|+=+|.++++.+=.+
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999999887664332221             111122   445555432          467899999999876555


Q ss_pred             e
Q 024676          225 N  225 (264)
Q Consensus       225 ~  225 (264)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.55  E-value=3.2  Score=40.10  Aligned_cols=142  Identities=15%  Similarity=0.101  Sum_probs=84.4

Q ss_pred             CeeeeEeccCCCCCe--EEEEEeCCCCcEEEeCCCCce-----EEeeeCC----cC--CEEEEEECCCC-cEEEEecCCC
Q 024676           18 PVVDLFYSPITPDGF--FLVSASKDSSPMLRNGETGDW-----IGTFEGH----KG--AVWSCCLDANA-LFSASGSADF   83 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~--~l~t~s~d~~v~i~~~~~~~~-----~~~~~~H----~~--~V~~v~~~~~~-~~l~s~s~D~   83 (264)
                      +|..+...+   |+.  .++..+.+..|..+|+++-..     .+.|..|    ..  .+.++.|.|.- ...+....|+
T Consensus       102 pi~~~v~~~---D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl  178 (1405)
T KOG3630|consen  102 PIVIFVCFH---DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL  178 (1405)
T ss_pred             cceEEEecc---CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence            344444443   543  444445544677788865421     1222222    22  33556677653 3346678899


Q ss_pred             eEEEEeCCCCc-EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC--CCCeEeccCCCCeEEEEEecCCCeE
Q 024676           84 TAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD--APPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        84 ~v~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      .+++.-+.... ....+.....+++++|+|-|+.++.|-..|++.-|.-.-..  .+...-......+.+++|.....++
T Consensus       179 sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence            89888765432 33345666778999999999999999999999888643211  1111111124678999999765554


Q ss_pred             EE
Q 024676          161 LS  162 (264)
Q Consensus       161 ~~  162 (264)
                      ++
T Consensus       259 vv  260 (1405)
T KOG3630|consen  259 VV  260 (1405)
T ss_pred             EE
Confidence            43

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=88.41  E-value=1.5  Score=29.06  Aligned_cols=42  Identities=14%  Similarity=0.205  Sum_probs=30.8

Q ss_pred             CCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCC
Q 024676          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG  207 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  207 (264)
                      ..|.+.-||.++++..--+..-.-.+.+++++|+.++..++-
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            348899999999986544554457899999999998877653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.26  E-value=8.1  Score=34.34  Aligned_cols=33  Identities=18%  Similarity=0.401  Sum_probs=24.1

Q ss_pred             EEEEEECCCC---CEEEEeeCCCcEEEeeCCCCCCC
Q 024676          105 VRACAFSEDT---HLLLTGGFEKILRIFDLNRPDAP  137 (264)
Q Consensus       105 v~~~~~~~~~---~~l~s~~~d~~i~~~d~~~~~~~  137 (264)
                      +.-++|||++   ..|..-+.|++||+||+.+....
T Consensus       168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            4456788864   66777788999999998765443

>smart00564 PQQ beta-propeller repeat

Probab=87.39  E-value=1.4  Score=22.54  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             CEEEEecCCCeEEEEEcCcceee
Q 024676          241 NIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       241 ~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ..++.++.++.++.+|.++|+++
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~   29 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEIL   29 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEE
Confidence            36778888999999999999875

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=87.26  E-value=16  Score=30.35  Aligned_cols=227  Identities=14%  Similarity=0.062  Sum_probs=106.4

Q ss_pred             cCCCCCeEEEEEeCCCCcEEEeCCC--CceEEeeeCCcCCEEEEEECCCCcEEEEe-cCCCeEEEEeCCCCcE-------
Q 024676           26 PITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALTGDE-------   95 (264)
Q Consensus        26 ~~~~~g~~l~t~s~d~~v~i~~~~~--~~~~~~~~~H~~~V~~v~~~~~~~~l~s~-s~D~~v~iwd~~~~~~-------   95 (264)
                      |.+.++++|+.|..+|.-.+. ...  ++..+.+  +...|..+...+....+++- +....++.+++..-..       
T Consensus         8 ~~~~~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~   84 (302)
T smart00036        8 PITCDGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS   84 (302)
T ss_pred             ccccCCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence            444455689999999976554 443  3343333  45688889888766665543 3334499998733221       


Q ss_pred             ---------EEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEec-------cCCCCeEEEEEecC--
Q 024676           96 ---------KHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG-------NSSGSIRTVAWLHS--  156 (264)
Q Consensus        96 ---------~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~--  156 (264)
                               .....+.+....+...... ..++.+.....|.++.............       ....++..+..++.  
T Consensus        85 ~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T smart00036       85 ARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFE  164 (302)
T ss_pred             ccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeeccccc
Confidence                     1223344433333333222 2334455567777776543311111111       11122222222221  


Q ss_pred             CCeEEEEeeCCCeEEEEECCC--CceeE------EecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee--EEe
Q 024676          157 DQTILSSCTDSGGVRLWDARS--GKIVQ------TLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYN  225 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~--~~~~~------~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~--~~~  225 (264)
                      ...+++++.. +...+.++..  ...-.      ..... .++....+ +++.++.+-++ ...+-|.......+  .+.
T Consensus       165 ~~~lcvG~~~-~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~  241 (302)
T smart00036      165 RPGICIGSDK-GGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCYDE-FGVFVNLYGKRRSRNPILH  241 (302)
T ss_pred             ceEEEEEEcC-CCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEECc-EEEEEeCCCCccccceEEE
Confidence            2234444332 2344444432  11100      00111 23333333 34566665543 34444543212222  233


Q ss_pred             cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ....+.+++...   .++++-+. ..|.++++.+|+.
T Consensus       242 w~~~p~~~~~~~---pyll~~~~-~~ievr~l~~~~l  274 (302)
T smart00036      242 WEFMPESFAYHS---PYLLAFHD-NGIEIRSIKTGEL  274 (302)
T ss_pred             cCCcccEEEEEC---CEEEEEcC-CcEEEEECCCCce
Confidence            444555555542   34555554 4499999988864

Unpublished observations.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.83  E-value=23  Score=33.31  Aligned_cols=38  Identities=16%  Similarity=0.155  Sum_probs=33.8

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG   51 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~   51 (264)
                      ++...|..++|+|.++++.+|+.=..|+.+|+||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            56678999999999988999999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.72  E-value=28  Score=32.66  Aligned_cols=66  Identities=9%  Similarity=0.024  Sum_probs=41.0

Q ss_pred             CEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d  130 (264)
                      .+.++.-+|.+.-++.++.|+++++++..............|-..+.+...|  |++...|+..--|.
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence            4566777899999999999999999998765542222222333333333223  45555565555564

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.58  E-value=4.9  Score=36.36  Aligned_cols=28  Identities=25%  Similarity=0.573  Sum_probs=22.7

Q ss_pred             CCeEEEEeeCCCeEEEEECCCCceeEEe
Q 024676          157 DQTILSSCTDSGGVRLWDARSGKIVQTL  184 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~  184 (264)
                      +..++.+.+.|+++|+||+++++++...
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            4556767788899999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK10115 protease 2; Provisional

Probab=86.54  E-value=28  Score=32.60  Aligned_cols=111  Identities=10%  Similarity=0.102  Sum_probs=62.3

Q ss_pred             CEEEEEECCCCcEEEEe-c----CCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCC------CcEEEee
Q 024676           63 AVWSCCLDANALFSASG-S----ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFE------KILRIFD  130 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~-s----~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~d  130 (264)
                      .+..+.++||+++++-+ +    ....+++-|+.++..+... ....  ..++|.++++.|+....+      ..+..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            35567889999987643 2    2247888898887533221 1111  458999988776665442      3466777


Q ss_pred             CCCCCCCCeEecc-CCCCeEEEEEec-CCCeEEEEee--CCCeEEEEEC
Q 024676          131 LNRPDAPPREVGN-SSGSIRTVAWLH-SDQTILSSCT--DSGGVRLWDA  175 (264)
Q Consensus       131 ~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~~~~~--~d~~v~iwd~  175 (264)
                      +.++......+.. .........+.+ ++..+++.+.  .++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            7766222222222 222233233344 5555555433  3357888885

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.21  E-value=5.5  Score=34.70  Aligned_cols=161  Identities=11%  Similarity=0.046  Sum_probs=84.1

Q ss_pred             eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE-EEee---cC---CeEE-EEEECCCCCEEEEeeCCCcEEE
Q 024676           57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK-HSFE---HK---HIVR-ACAFSEDTHLLLTGGFEKILRI  128 (264)
Q Consensus        57 ~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~---~~---~~v~-~~~~~~~~~~l~s~~~d~~i~~  128 (264)
                      +..--..|..+-..||++.+..-+. ..+.++++.+.... +.+.   ..   +.|+ .+..-..+.-++.++.||.+.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            3333455666778899987755443 46788887554311 1111   11   1111 0101112455677788888776


Q ss_pred             e-eCCCCCCCC-e--EeccCC-CCeEEEEEecC-CCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE
Q 024676          129 F-DLNRPDAPP-R--EVGNSS-GSIRTVAWLHS-DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI  202 (264)
Q Consensus       129 ~-d~~~~~~~~-~--~~~~~~-~~i~~~~~~~~-~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  202 (264)
                      | |.++..... .  ...... .++..+  .|+ ...-+.+-+.+|++.++-.-..+.+..-..-....-+++||++.++
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYL  372 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchh
Confidence            5 654432211 1  111111 122111  222 1223445556677777665444433211222245668899999999


Q ss_pred             EEeCCCcEEEEECCCcee
Q 024676          203 TTADGSSVKFWDANHFGL  220 (264)
Q Consensus       203 ~~~~~~~i~iwd~~~~~~  220 (264)
                      ..-+.+.|+++.+++..+
T Consensus       373 l~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         373 LSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             eeecCCceEEEEecCCCC
Confidence            888889999999877654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.73  E-value=11  Score=27.05  Aligned_cols=86  Identities=13%  Similarity=0.022  Sum_probs=51.3

Q ss_pred             EECCCCCEEEEeeCCCcEEEeeCCCCCC------CCeEeccCCCCeEEEEEec----CCCeEEEEeeCCCeEEEEECCCC
Q 024676          109 AFSEDTHLLLTGGFEKILRIFDLNRPDA------PPREVGNSSGSIRTVAWLH----SDQTILSSCTDSGGVRLWDARSG  178 (264)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~d~~v~iwd~~~~  178 (264)
                      .|+.....|+.++.-++|.+++......      .......-+..+.+++--+    .+.-.|+.|+. ..+..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence            4555556677777788888887543211      1112233455666665332    22335555555 68999999988


Q ss_pred             ceeEEecCCCCEEEEEE
Q 024676          179 KIVQTLETKSPVTSAEV  195 (264)
Q Consensus       179 ~~~~~~~~~~~v~~~~~  195 (264)
                      ..+..-+....++++.+
T Consensus        84 ~d~Fyke~~DGvn~i~~  100 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVI  100 (136)
T ss_pred             chhhhhhCccceeEEEE
Confidence            76654445556776665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=85.47  E-value=24  Score=30.81  Aligned_cols=201  Identities=15%  Similarity=0.180  Sum_probs=87.9

Q ss_pred             CCeeeeEecc--------CCCCCeEEEEEe-CCCCcEEEeCCCC----ceEEeeeC---Cc--C--CEEEEEECCCCcEE
Q 024676           17 RPVVDLFYSP--------ITPDGFFLVSAS-KDSSPMLRNGETG----DWIGTFEG---HK--G--AVWSCCLDANALFS   76 (264)
Q Consensus        17 ~~v~~~~~~~--------~~~~g~~l~t~s-~d~~v~i~~~~~~----~~~~~~~~---H~--~--~V~~v~~~~~~~~l   76 (264)
                      .+..+.-|+.        .+.+.++|+..+ .+..|.|.|..+.    +..+.++.   ++  +  .-+.+.--|+|..+
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im  144 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM  144 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred             CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence            3555666652        123467777777 5567788888743    33444442   21  1  11222234678777


Q ss_pred             EEe--cCC----CeEEEEeCCCCcEEEEeecC----CeEEEEEECCCCCEEEEee--------------------CCCcE
Q 024676           77 ASG--SAD----FTAKLWDALTGDEKHSFEHK----HIVRACAFSEDTHLLLTGG--------------------FEKIL  126 (264)
Q Consensus        77 ~s~--s~D----~~v~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~--------------------~d~~i  126 (264)
                      +|+  ..+    |-+-+.|-++.+.+-.++..    ..-....|.|-.+.++|..                    ..+.+
T Consensus       145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l  224 (461)
T PF05694_consen  145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL  224 (461)
T ss_dssp             EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred             EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence            664  222    45667777777766666532    2345677888877887753                    34669


Q ss_pred             EEeeCCCCCCCCeEeccCCC-CeEEEEEecC--CCeEEEEeeCCCeE-EEEECCCCc----eeEEecC------------
Q 024676          127 RIFDLNRPDAPPREVGNSSG-SIRTVAWLHS--DQTILSSCTDSGGV-RLWDARSGK----IVQTLET------------  186 (264)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~--~~~~~~~~~~d~~v-~iwd~~~~~----~~~~~~~------------  186 (264)
                      .+||+.+.+..+.......+ ....+.|.++  ..+=++++.-...| ++|..+.++    .+..+..            
T Consensus       225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml  304 (461)
T PF05694_consen  225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML  304 (461)
T ss_dssp             EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred             EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence            99999877655444333333 3456677643  22223333322333 444434443    1122211            


Q ss_pred             ------CCCEEEEEEcCCCcEEEEe-C-CCcEEEEECCC
Q 024676          187 ------KSPVTSAEVSRDGRYITTA-D-GSSVKFWDANH  217 (264)
Q Consensus       187 ------~~~v~~~~~s~~~~~l~~~-~-~~~i~iwd~~~  217 (264)
                            ..-++.+.+|.|.+||-.+ . .+.|+-||+..
T Consensus       305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence                  1237889999999987554 3 68999999975

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=84.93  E-value=19  Score=29.03  Aligned_cols=142  Identities=14%  Similarity=0.038  Sum_probs=81.9

Q ss_pred             CEEEEEECCCCcEEEEec---CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEee-CCCCCCCC
Q 024676           63 AVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD-LNRPDAPP  138 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d-~~~~~~~~  138 (264)
                      .+.+.++++++..++...   ....+.++......  ........+..-.|++++...+....+...+++. ...++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            577889999998765443   33455555543322  2221233556667899987777666666666663 23333222


Q ss_pred             eEeccC--CCCeEEEEEecCCCeEEEEee--CCCeEEEEECC---CC--ce----eEEe-cCCCCEEEEEEcCCCcEEEE
Q 024676          139 REVGNS--SGSIRTVAWLHSDQTILSSCT--DSGGVRLWDAR---SG--KI----VQTL-ETKSPVTSAEVSRDGRYITT  204 (264)
Q Consensus       139 ~~~~~~--~~~i~~~~~~~~~~~~~~~~~--~d~~v~iwd~~---~~--~~----~~~~-~~~~~v~~~~~s~~~~~l~~  204 (264)
                      ......  .+.|..+.+++++..+++...  .++.|.+=-+.   .+  ..    +... .....+..+.|.+++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            222221  227899999998877655442  33566665432   22  11    1111 12357889999999988765


Q ss_pred             eC
Q 024676          205 AD  206 (264)
Q Consensus       205 ~~  206 (264)
                      ..
T Consensus       183 ~~  184 (253)
T PF10647_consen  183 GR  184 (253)
T ss_pred             eC
Confidence            43

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.97  E-value=25  Score=32.88  Aligned_cols=101  Identities=18%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             CCeEEEEeeCCCeEEEEECCC-------C-------------ceeEEecCCCCEEEEEEc--CCCcEEEEeCC-CcEEEE
Q 024676          157 DQTILSSCTDSGGVRLWDARS-------G-------------KIVQTLETKSPVTSAEVS--RDGRYITTADG-SSVKFW  213 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~-~~i~iw  213 (264)
                      +..+|+.|.+||.|.+|-.++       .             ++...+.....+-.++++  ...++||.+++ ..|.+|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            445788888999999996531       1             011222334456778887  77788887764 566665


Q ss_pred             ECCC--c--eeeeEEecCCCCceeeEcCCC----CC-EEEEecCCCeEEEEEc
Q 024676          214 DANH--F--GLVKGYNMPCNTESASLEPKL----GN-IFIAGGEDMWVHVFDF  257 (264)
Q Consensus       214 d~~~--~--~~~~~~~~~~~~~~~~~~~~~----~~-~~~~gs~d~~v~vwd~  257 (264)
                      -...  .  .....+....+..+++|.+..    |. .+++++-.|.+-+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            4322  1  112233344556666665433    33 7888999999999877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF01011 PQQ: PQQ enzyme repeat family

Probab=83.47  E-value=2.2  Score=22.97  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=17.3

Q ss_pred             EEEecCCCeEEEEEcCcceee
Q 024676          243 FIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +..++.|+.++-.|.++|+.+
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~   23 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVL   23 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEE
T ss_pred             EEEeCCCCEEEEEECCCCCEE
Confidence            445589999999999999875

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=82.60  E-value=23  Score=28.35  Aligned_cols=139  Identities=18%  Similarity=0.194  Sum_probs=75.0

Q ss_pred             EEEeCCCCcEEEEeecCC-eEEEEEECCCCCEEEEeeC-C--CcEEEeeCCC--CCCCCeEec---cCCCCeEEEEEecC
Q 024676           86 KLWDALTGDEKHSFEHKH-IVRACAFSEDTHLLLTGGF-E--KILRIFDLNR--PDAPPREVG---NSSGSIRTVAWLHS  156 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~-d--~~i~~~d~~~--~~~~~~~~~---~~~~~i~~~~~~~~  156 (264)
                      -+||..++......-..+ ...+-.+-++|+++.+|+. +  +.+++++.-.  ......+..   ...-.-.+....++
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            468887765432211111 2223346779999998875 2  4577887532  111122211   11112223344677


Q ss_pred             CCeEEEEeeCCCeEEEEECCCC--ceeE-Ee-c------CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676          157 DQTILSSCTDSGGVRLWDARSG--KIVQ-TL-E------TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~--~~~~-~~-~------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  225 (264)
                      +..++++|...-...+|..+..  .... .+ .      ....-..+.+-|+|+++..+.. .-.|||..+.+.++.+.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeCCCCeEEeeCC
Confidence            7777777776556777765321  1111 11 1      1112235677899999887764 45677998887766664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=82.15  E-value=31  Score=29.46  Aligned_cols=97  Identities=14%  Similarity=0.164  Sum_probs=53.3

Q ss_pred             eeeEeccCCCCCeEEEEEe-----------CCC-CcEEEeCCC--Cc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676           20 VDLFYSPITPDGFFLVSAS-----------KDS-SPMLRNGET--GD--WIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s-----------~d~-~v~i~~~~~--~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      .+|+|.+   +|++.++-.           ..+ .|.+.+-.+  |.  ....|.........+++.+++ .+++ +.+.
T Consensus        17 ~~ia~d~---~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~   91 (367)
T TIGR02604        17 IAVCFDE---RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD   91 (367)
T ss_pred             ceeeECC---CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence            4788885   888776643           122 455554332  32  223443333455788898888 4443 4454


Q ss_pred             eEEEEeCCCC-----c--EEEE-eec-----CCeEEEEEECCCCCEEEEee
Q 024676           84 TAKLWDALTG-----D--EKHS-FEH-----KHIVRACAFSEDTHLLLTGG  121 (264)
Q Consensus        84 ~v~iwd~~~~-----~--~~~~-~~~-----~~~v~~~~~~~~~~~l~s~~  121 (264)
                      ..++.|....     +  .+.. +..     .+..+.+.+.|++.+.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            4445454321     1  1111 211     34577899999998777654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.90  E-value=38  Score=30.30  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=79.9

Q ss_pred             CCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCC--------CEEEEeeCCCcEEEeeCCCCCCCCeEe
Q 024676           71 ANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT--------HLLLTGGFEKILRIFDLNRPDAPPREV  141 (264)
Q Consensus        71 ~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (264)
                      .|..++ ..|.....+.--|++-|+.+..+.....| .+.|.|..        +.|+ |-.+..|.-.|.+...-.. ..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi-~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKI-KV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCce-ee
Confidence            344443 45665556666678888888887765555 66777753        3343 4445555545543222110 01


Q ss_pred             ccCCCCeEEEEE----ecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECC
Q 024676          142 GNSSGSIRTVAW----LHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (264)
Q Consensus       142 ~~~~~~i~~~~~----~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  216 (264)
                      ...+.....-.|    ....+ +++.++..|-||+||--.-+..-.+. ....|..+..+.+|+++.+.-..++.+-|++
T Consensus       554 ~esKdY~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eeehhccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            111111111111    22334 45566778999999953322222232 3456888999999999877666788888875

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=80.68  E-value=0.19  Score=43.58  Aligned_cols=136  Identities=14%  Similarity=0.187  Sum_probs=83.1

Q ss_pred             EEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCCCCCCCCeEec-c
Q 024676           66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVG-N  143 (264)
Q Consensus        66 ~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~-~  143 (264)
                      ...|-+.+.-++.++.+..+..||-. ++.......+.....++|+.++..++ .+-..+++.+||+++.....-..+ .
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~  117 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT  117 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc
Confidence            35567777667888888899999843 33333333334445567777765544 355678999999976543322222 1


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe
Q 024676          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA  205 (264)
Q Consensus       144 ~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~  205 (264)
                      +..+.  ..|++.....++ +-..+.+.|+...+.+...... +...+.++++.+.+..+.++
T Consensus       118 ~s~sl--l~wsKg~~el~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  118 SSKSL--LAWSKGTPELVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             chHHH--HhhccCCccccc-cccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            22222  456654444333 4456889999988776544443 55668888888877655544

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=80.42  E-value=31  Score=28.34  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec------CCCeEEEEeCCCCcEEEEee------cCCeEEEE
Q 024676           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFE------HKHIVRAC  108 (264)
Q Consensus        41 ~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~------~~~~v~~~  108 (264)
                      ..+.+||..+.++...-.+=.+.|..+.|..+.+.++.|.      ....+-.||..+..- ..+.      -..+|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            3477899998888766666678899999987777777763      456777888776532 1221      23567766


Q ss_pred             EECC--CCCEEEEee-C--CCcEEEeeC
Q 024676          109 AFSE--DTHLLLTGG-F--EKILRIFDL  131 (264)
Q Consensus       109 ~~~~--~~~~l~s~~-~--d~~i~~~d~  131 (264)
                      .+..  ..++.++|. .  +..+..||-
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcC
Confidence            6533  234444443 2  233555653

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=80.08  E-value=37  Score=29.06  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=14.6

Q ss_pred             CCCEEEEecCCC------eEEEEEcCcce
Q 024676          239 LGNIFIAGGEDM------WVHVFDFHTGE  261 (264)
Q Consensus       239 ~~~~~~~gs~d~------~v~vwd~~~g~  261 (264)
                      .+++++.||...      .|.+++..++.
T Consensus       343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~  371 (376)
T PRK14131        343 NNGVLLIGGETAGGKAVSDVTLLSWDGKK  371 (376)
T ss_pred             CCEEEEEcCCCCCCcEeeeEEEEEEcCCE
Confidence            477888888643      56666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-18
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-18
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-18
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-18
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-18
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-18
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-18
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-18
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-18
2h9l_A	329	Wdr5delta23 Length = 329		6e-18
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-18
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-18
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-18
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-18
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-17
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-17
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-16
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-16
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-15
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-13
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-13
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-12
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-12
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-11
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-11
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-11
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-11
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-11
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-11
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		6e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		7e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		8e-04

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 67  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 11  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 67
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 68  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 124 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 181
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 242 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 67  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 9   KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 65
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 66  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 122 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 179
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 27  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 83
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 84  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 140 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 197
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 258 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 6   KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 62
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 63  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 119 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 176
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 237 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 15  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 71
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 72  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 128 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 185
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 246 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 32  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 88
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 89  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 145 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 202
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 34  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 90
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 91  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 147 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 204
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 265 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   + +K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 133/272 (48%), Gaps = 20/272 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L ++S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            A+     G   ++G ED  V++++  T E +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 24/225 (10%)
Query: 17  RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
           RP  D ++++  + DG  + S   D +  +   ETG+ +   + H+  V  C   ++  +
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 76  SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
            A+ SAD   K+WD+ TG   H++ EH   V  C F+ +  HLLL TG  +  L+++DLN
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
           + +      G  NS    R       D  +L+SC+  G +RLWD RS    +++  K   
Sbjct: 739 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLV 221
                P    EV       S DG  I  A  + V  +D +  GL+
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 24/225 (10%)
Query: 17  RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
           RP  D ++++  + DG  + S   D +  +   ETG+ +   + H+  V  C   ++  +
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 76  SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
            A+ SAD   K+WD+ TG   H++ EH   V  C F+ +  HLLL TG  +  L+++DLN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
           + +      G  NS    R       D  +L+SC+  G +RLWD RS    +++  K   
Sbjct: 732 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLV 221
                P    EV       S DG  I  A  + V  +D +  GL+
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 24/212 (11%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GHS  V  + +SP   DG  + SAS D +  L N   G  + T  GH  +VW      + 
Sbjct: 301 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 74  LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
              AS S D T KLW+        LTG       H   VR  AFS D   + +   +K +
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
           +++  NR     + +   S S+  VA+   DQTI +S +D   V+LW+ R+G+++QTL  
Sbjct: 410 KLW--NRNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWN-RNGQLLQTLTG 465
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN 216
             S V     S DG+ I +A D  +VK W+ N
Sbjct: 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 21/276 (7%)
Query: 2   DKRKVAVPL-VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D+    +P     GHS  V D+    I+ DG F +S S D +  L +  TG     F GH
Sbjct: 71  DETNYGIPQRALRGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH-- 115
              V S    ++     SGS D T KLW+ L G  K++ +   H   V    FS ++   
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
           ++++ G++K++++++L         +G+ +G + TV  +  D ++ +S    G   LWD 
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDL 244
Query: 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
             GK + TL+    + +   S +  ++  A G S+K WD     +V        + S+  
Sbjct: 245 NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 304
Query: 236 EPKL---------GNIFIAGGEDMWVHVFDFHTGEQ 262
           EP           G    AG  D  V V+    G +
Sbjct: 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 21/276 (7%)
Query: 2   DKRKVAVPL-VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D+    +P     GHS  V D+    I+ DG F +S S D +  L +  TG     F GH
Sbjct: 48  DETNYGIPQRALRGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 104
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH-- 115
              V S    ++     SGS D T KLW+ L G  K++ +   H   V    FS ++   
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNP 163
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175
           ++++ G++K++++++L         +G+ +G + TV  +  D ++ +S    G   LWD 
Sbjct: 164 IIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDL 221
Query: 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
             GK + TL+    + +   S +  ++  A G S+K WD     +V        + S+  
Sbjct: 222 NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 281
Query: 236 EPKL---------GNIFIAGGEDMWVHVFDFHTGEQ 262
           EP           G    AG  D  V V+    G +
Sbjct: 282 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 122/295 (41%), Gaps = 50/295 (16%)
Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           P V  GH   V+    + +   G  +VS S D++  + +  TG  + T  GH G VWS  
Sbjct: 111 PKVLKGHDDHVI----TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILR 127
           +  N +   SGS D T K+W+A TG+  H+ + H   VR     E    +++G  +  LR
Sbjct: 167 MRDNIII--SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLR 222
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAW------------------------LHSDQ----- 158
           ++D+         +G+ + ++R V +                        LH+ Q     
Sbjct: 223 VWDIETGQCLHVLMGHVA-AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281
Query: 159 ---------TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS 209
                     ++S   D+  +R+WD  +G  + TL     +TS    +D   ++    S+
Sbjct: 282 VYSLQFDGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST 340
Query: 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQI 263
           VK WD      ++    P   +SA    +   N  I   +D  V ++D  TGE I
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV          SA+
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAA 284
Query: 235 LEPKL--------GNIFIAGGEDMWVHVFDFHTGE 261
            EP          G    AG  D  + V+   T  
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
           HGH   V  +    I P+G  +VSAS+D +  +   +TG  + TF GH+  V     + +
Sbjct: 189 HGHDHNVSSV---SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 73  ALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH---------------- 115
               AS S D T ++W   T + K    EH+H+V   +++ ++                 
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 116 ----LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
                LL+G  +K ++++D++        VG+ +  +R V   HS    + SC D   +R
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVL-FHSGGKFILSCADDKTLR 363
Query: 172 LWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWD 214
           +WD ++ + ++TL      VTS +  +   Y+ T     +VK W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
               + SL     G    AG  D  + V+   T  
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
               + SL     G    AG  D  + V+   T  
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 26/257 (10%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH RP+  + Y+    +G  L S SKDSS  +     G+ +GT +GH G +WS  +D   
Sbjct: 30  GHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR------ 127
            +  +GSAD++ KLWD   G    +++    V+   FS   +  L    + +++      
Sbjct: 87  KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL-AILDNVMKNPGSIN 145
Query: 128 IFDLNRPDA----------PPREVGNSSG-SIRTVA-WLHSDQTILSSCTDSGGVRLWDA 175
           I+++ R  A          P  ++    G    TVA W    + I++   D G +  +D 
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-GKISKYDV 204
Query: 176 RSG-KIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFW-DANHFGLVKGYNMPCNTES 232
            +  + V +++  +  ++  + S D  Y  T+   +  F  D +   ++K Y   C   +
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264
Query: 233 ASLEPKLGNIFIAGGED 249
           A + P    I + GG++
Sbjct: 265 AVITPLKEFIILGGGQE 281

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 44  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 218
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 278
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
               + SL     G    AG  D  + V+   T  
Sbjct: 279 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 20/269 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K + TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVF 255
               + SL     G    AG  D  + V+
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 20/275 (7%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQDC---TLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K ++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKXVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIXLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-------KGYNMP 227
             + K   TL  +  V S   S +  ++  A  + +K +  +   LV        GY+  
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 228 CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261
               + SL     G    AG  D  + V+   T  
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 13/226 (5%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GHS  V D+    ++ DG F +S S D    L +   G     F GH   V S     + 
Sbjct: 428 GHSHFVEDVV---LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDT--HLLLTGGFEKIL 126
               S S D T KLW+ L G+ K++       H+  V    FS +T    +++  ++K +
Sbjct: 485 RQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
           ++++L+         G++ G + TVA +  D ++ +S    G V LWD   GK + +LE 
Sbjct: 544 KVWNLSNCKLRSTLAGHT-GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 187 KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES 232
            S + +   S +  ++  A    +K WD     +V+   +    E+
Sbjct: 602 NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEA 647

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 15/216 (6%)
Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
            GHS  V D+    ++ +G F VSAS D S  L N + G     F GH   V S     +
Sbjct: 64  EGHSAFVSDV---ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSE--DTHLLLTGGFEKILR 127
                SG  D   ++W+ + G+  H+     H   V    FS   D  ++++GG++ +++
Sbjct: 121 NRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 128 IFDLNRPDAPPREVGNSSGSIRTV--AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185
           ++DL    A  R V +  G    V    +  D ++ +S    G  RLWD   G+ +  + 
Sbjct: 180 VWDL----ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV 221
             +P+     S +  ++  A    ++ +D  +  ++
Sbjct: 236 AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDII 271

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 32/191 (16%)
Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCC 68
           V + H++ V  + + P       L SAS D +  L   E  DW+   T EGH+  VWS  
Sbjct: 145 VLNSHTQDVKHVVWHPSQE---LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 69  LDANALFSASGSADFTAKLW-DALTGDEKH----------------SFEHKHIVRACAFS 111
            D +    AS S D T ++W   L G+E+                 S  H   +   A+ 
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------SGSIRTVAWLHSDQTILS 162
           + T  L T   +  +R+F  + P++ P++   S         S  +  VAW   +  +L+
Sbjct: 262 QLTGALATACGDDAIRVFQED-PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 163 SCTDSGGVRLW 173
           SC+D G V  W
Sbjct: 321 SCSDDGEVAFW 331

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 25/204 (12%)
Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           ++ RK+   ++  GH + +  L Y    P G  LVS S D +  + +  TG    T    
Sbjct: 152 IENRKIV--MILQGHEQDIYSLDY---FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTG--------DEKHSFEHKHIVRACAFSE 112
            G         +  + A+GS D   ++WD+ TG        + +    HK  V +  F+ 
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-----------IRTVAWLHSDQTIL 161
           D   +++G  ++ +++++L   +        +SG+           + +VA   +D+ IL
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 162 SSCTDSGGVRLWDARSGKIVQTLE 185
           S   D  GV  WD +SG  +  L+
Sbjct: 327 SGSKDR-GVLFWDKKSGNPLLMLQ 349

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 115/280 (41%), Gaps = 34/280 (12%)
Query: 9   PLVCHGHSRPVVDLFYSPI--TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS 66
           P   +  S P  DL+   +  +PDG FL + ++D    + + E    +   +GH+  ++S
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 67  CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKI 125
                +     SGS D T ++WD  TG    +   +  V   A S  D   +  G  ++ 
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 230
Query: 126 LRIFD------LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179
           +R++D      + R D+          S+ +V +    Q+++S   D   V+LW+ ++  
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNAN 289
Query: 180 IVQTLETKSP---------------VTSAEVSRDGRYITT-ADGSSVKFWD---ANHFGL 220
                ++K+P               V S   +++  YI + +    V FWD    N   +
Sbjct: 290 --NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347
Query: 221 VKGYNMPCNTESASLEPKLG---NIFIAGGEDMWVHVFDF 257
           ++G+     + + +    LG   N+F  G  D    ++ +
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 112/273 (41%), Gaps = 27/273 (9%)
Query: 11  VCHGHSRPVVDL---FYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGH 60
           +  GHS  V  +   F      D   L+S S+D + M+       +NG  G       GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLT 119
              V    L     F+ S S D T +LWD  TG     F  H+  V + AFS D   +L+
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 120 GGFEKILRIFD-LNRPDAPPREVGNSSGSIRTVAW---LHSDQTI------LSSCTDSGG 169
            G E+ +++++ L        E  N S  +  V +   + S   +       +S    G 
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL-VKGYNM 226
           +++W+  + +I  T +  +S V    +S +G+YI T      +  WD  +     + ++ 
Sbjct: 196 LKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA 254
Query: 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259
                  +  PKL   ++A G D  V +F+  T
Sbjct: 255 GSTINQIAFNPKLQ--WVAVGTDQGVKIFNLMT 285

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93  G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSG 146
               + +FE H+H V   AF+ +D     +G  ++ ++++ L +  + P      G   G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERG 186
Query: 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITT 204
                 +   D+  + + +D   +++WD ++   V TLE      S  V        I+ 
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 205 ADGSSVKFWDANHFGLVKGYNM 226
           ++  ++K W+++ + + K  N+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNV 268

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93  G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSG 146
               + +FE H+H V   AF+ +D     +G  ++ ++++ L +  + P      G   G
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERG 186
Query: 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITT 204
                 +   D+  + + +D   +++WD ++   V TLE      S  V        I+ 
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 205 ADGSSVKFWDANHFGLVKGYNM 226
           ++  ++K W+++ + + K  N+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNV 268

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90  --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
             AL    + +FE H+H V   AF+ +D     +G  ++ ++++ L +   P   +  ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTL--TT 181
Query: 146 GSIRTVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
           G  R V ++      D+  + + +D   +++WD ++   V TLE      S  V      
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
             I+ ++  ++K W+++ + + K  N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 18/225 (8%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
           T +GH G V+S        +  S S D    +W+ALT  + H+ + H   V  CAF+ + 
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 115 HLLLTGGFEKILRIFDL----NRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSG 168
             +  GG +    IF+L    +R    P  R +    G   +  ++   +T L + +   
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 169 GVRLWDARSGKIVQTLETKSP------VTSAEVS--RDGRYITTADGSSVKFWDANHFG- 219
              LWD  +G+ +    ++ P      V S  ++      +I+ +  ++V+ WD      
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 220 LVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            V+ Y+    +  S    P  G  F  G +D    +FD  TG Q+
Sbjct: 241 AVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQL 284

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90  --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
             AL    + +FE H+H V   AF+ +D     +G  ++ ++++ L +   P   +  ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-TPNFTL--TT 181
Query: 146 GSIRTVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
           G  R V ++      D+  + + +D   +++WD ++   V TLE      S  V      
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
             I+ ++  ++K W+++ + + K  N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           + EGH+  V S  +      +AS S D   +LWD   G +  S +   +     AFS D+
Sbjct: 75  SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             L TG     + IF +         +      I ++A+   D   L+S    G + ++D
Sbjct: 135 QYLATGTHVGKVNIFGV-ESGKKEYSLDTRGKFILSIAY-SPDGKYLASGAIDGIINIFD 192
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220
             +GK++ TLE  + P+ S   S D + + TA D   +K +D  H  L
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 114/296 (38%), Gaps = 69/296 (23%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           ++++ + D    + +     ++    GH G VW+    A+     SGS D T ++WD   
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93  GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
           G   H FE H   VR     E  +   ++TG  +  L ++ L +                
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
              P+  P  VG   G   S+RTV+                                   
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
                + H  +  +S+  D+  +R+WD  +G+++ TL+  + +       D   ++ A  
Sbjct: 313 IYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            S++ WDAN +     Y+   N  + +      NI ++G E+ + ++++  +G+ +
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLV 425

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 113/296 (38%), Gaps = 69/296 (23%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           ++++ + D    + +     ++    GH G VW+    A+     SGS D T ++WD   
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93  GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
           G   H FE H   VR     E  +   ++TG  +  L ++ L +                
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
              P+  P  VG   G   S+RTV+                                   
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
                + H  +  +S+  D+  +R+WD  +G++  TL+  + +       D   ++ A  
Sbjct: 313 IYSTIYDHERKRCISASXDTT-IRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            S++ WDAN +     Y+   N  + +      NI ++G E+ + ++++  +G+ +
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLV 425

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 178
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD       + +    +
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
             +A      GN F  G +D    +FD    +++
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 272

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD       + +    +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
             +A      GN F  G +D    +FD    +++
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD       + +    +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
             +A      GN F  G +D    +FD    +++
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD       + +    +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
             +A      GN F  G +D    +FD    +++
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           + +  GG + I  I++L   +      RE+   +G +    +L  +Q + SS   +    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 172 LWDARSGKIVQTLETKS-PVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G+   T    +  V S  ++ D R +++ A  +S K WD       + +    +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
             +A      GN F  G +D    +FD    +++
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSE 112
           IGT +GH   V      ++ L  ASG  D   ++WDA +   K +   H   V+A A+  
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGV 170
             ++LL TGG     +I   N          ++   + ++ W  HS + + +       +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 171 RLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT-ADGSSVKFW 213
            +W   S  + + ++     + V  + +S DGR ++T A   ++KFW
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCC 68
           V   HS+ V  + + P       L S+S D +  +      DW  +    GH+G VWS  
Sbjct: 148 VLQEHSQDVKHVIWHPSEA---LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 69  LD-ANALFS-ASGSADFTAKLWDALTGDEKHSFE----------HKHIVRACAFSEDTHL 116
            D    +F   SGS D T ++W  +  DE    E          HK  V   A+  +  L
Sbjct: 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263
Query: 117 LLTGGFEKILRIF---DLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRL 172
           + + G + +L ++   D        R + +    I  V WL  + +TIL++  D G V  
Sbjct: 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 173 W 173
           W
Sbjct: 324 W 324

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 42/220 (19%)
Query: 34  LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
           +VS  +D++  + +  T +      GH G+V   CL  +     +GS+D T ++WD  TG
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 94  DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-DAPPR------------- 139
           +  ++  H H         +  +++T   ++ + ++D+  P D   R             
Sbjct: 204 EMLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262
Query: 140 ----------------EVGNSS---------GSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
                           +V N+S         G  R +A L     ++ S +    +RLWD
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 322
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214
              G  ++ LE    +       + R ++ A    +K WD
Sbjct: 323 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
           + K+  I +L  P A     G ++  +  +AW H   +I++   ++G +RLW+ ++G ++
Sbjct: 85  YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-ENGELRLWN-KTGALL 142
Query: 182 QTLE-TKSPVTSAEVSRDGRYITTADGSSVK-FWDA------NHFGLVKGYNMPCNTESA 233
             L   ++P+ S + ++DG +I + D  +V   W+        HF L +      N E+ 
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
Query: 234 SLEPKLG 240
           S +  LG
Sbjct: 203 SGDGSLG 209

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 99  FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158
               + +R+C    D   L+ GG    L I+DL  P    +    SS        +  D 
Sbjct: 94  LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA-EVSRDGRYITTAD-GSSVKFWD 214
            +  SC   G + +WD  +  +V+  +  +   S  ++S DG  + T    ++V+ WD
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.45
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.44
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.43
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.4
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.38
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.29
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.27
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.21
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.19
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.11
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.07
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.05
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.04
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.04
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.01
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.0
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.99
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.98
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.98
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.95
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.92
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.91
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.9
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.86
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.84
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.79
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.7
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.65
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.64
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.55
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.48
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.46
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.44
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.39
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.39
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.33
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.28
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.27
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.25
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.21
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.19
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.19
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.17
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.14
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.08
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.07
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.04
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.03
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.02
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.96
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.92
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.89
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.84
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.82
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.81
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.8
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.79
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.71
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.69
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.67
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.64
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.64
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.56
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.51
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.47
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.47
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.43
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.02
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.96
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.55
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.54
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.32
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.31
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.95
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.86
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.83
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.75
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.74
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.37
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.24
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.04
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.91
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.85
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.58
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.5
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.66
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.76
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.21
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.0
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.87
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.76
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.67
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.58
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.93
3ott_A	758	Two-component system sensor histidine kinase; beta	87.6
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	87.48
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.14
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	84.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	82.09

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.2e-45  Score=300.49  Aligned_cols=254  Identities=19%  Similarity=0.231  Sum_probs=220.6

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      +.....+.+|+++|.+|+|+|   +|++|++|+.|+.|++||..+++.++.+.+|..+|.+++|++++.++++|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp---~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHP---TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             ceeEEeecCCCCceEEEEECC---CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            445667899999999999996   89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ++||+.+++.+..+. |...|++++|+|++++|++|+.|++|++||++++.........|...+.+++|+|.++.+++++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            999999998887775 8889999999999999999999999999999866444445567888999999998777788899


Q ss_pred             eCCCeEEEEECCCCceeEEec--CCCCEEEEEEcC--CCcEEE-EeCCCcEEEEECCCceeeeEEecCCCC-ceeeEcCC
Q 024676          165 TDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSR--DGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPK  238 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~--~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~  238 (264)
                      +.|++|++||+++++....+.  +...+..+.++|  ++.+++ ++.|++|++||+++++++..+..+... ..+.+.| 
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-  238 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-  238 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-
T ss_pred             eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-
Confidence            999999999999887665553  335788999987  566665 567899999999999999988876544 4456666 


Q ss_pred             CCCEEEEecCCCeEEEEEcCcceee
Q 024676          239 LGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+.+|++||.|++|++||+.+++.+
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcee
Confidence            5889999999999999999988754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.2e-42  Score=292.67  Aligned_cols=247  Identities=21%  Similarity=0.343  Sum_probs=215.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.||..+|.+++|+|   ++++|++|+.|++|++||..+++...++.+|.+.|.+++|+|++.++++|+.|++|++||
T Consensus       102 ~~l~gh~~~V~~~~~~p---~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             CEEECCSSCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             EeecccCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            45679999999999996   888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      +.+++.+..+. |...|.+++|+|+++++++|+.|++|++||++++... ..+..|...+.++.+.+++ .++++++.|+
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~  256 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWVRMVRPNQDG-TLIASCSNDQ  256 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-EEEeCCCccEEEEEECCCC-CEEEEEcCCC
Confidence            99988877764 8889999999999999999999999999999877543 3445678889999988754 5677888899


Q ss_pred             eEEEEECCCCceeEEec-CCCCEEEEEEcCC--------------------CcEEE-EeCCCcEEEEECCCceeeeEEec
Q 024676          169 GVRLWDARSGKIVQTLE-TKSPVTSAEVSRD--------------------GRYIT-TADGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~--------------------~~~l~-~~~~~~i~iwd~~~~~~~~~~~~  226 (264)
                      +|++||++++++...+. +...+.+++|+|+                    +.+++ ++.|+.|++||++++.++..+..
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~  336 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG  336 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence            99999999999888775 4567999999996                    44554 56789999999999999988876


Q ss_pred             CCCC-ceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          227 PCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       227 ~~~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      +... ..+.+.+ .+++|++||.|+.|++||+.+++.
T Consensus       337 h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          337 HDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred             CCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence            5543 4566766 589999999999999999988764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=284.97  Aligned_cols=244  Identities=18%  Similarity=0.171  Sum_probs=201.1

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE----eeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG----TFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~----~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ..|..+|.+|+|+|   ++ .|++|+.||+|++||+.+++.+.    .+.+|++.|.+++|+|++.+|+||+.|++|++|
T Consensus        79 ~~~~~~v~~~~~s~---d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           79 VQTEAGVADLTWVG---ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EEESSCEEEEEEET---TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eccCCCEEEEEEeC---CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            45778899999996   54 67899999999999999887543    345899999999999999999999999999999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEee
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      |+.+++.+..+. |...|++++|+|++ .++++++.|++|++||+++++...... ..+...+.+++|+|.+..++++++
T Consensus       155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            999999888875 88999999999987 578899999999999998776533322 234456889999998888899999


Q ss_pred             CCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCC-cEEE-EeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCE
Q 024676          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDG-RYIT-TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI  242 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (264)
                      .|++|++||+++++++..+.. ...|.+++|+|++ ++|+ ++.|++|++||++++++++..........++|+|....+
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeE
Confidence            999999999999999888864 5679999999998 5565 567899999999998876543333445677888876678


Q ss_pred             EEEecCCCeEEEEEcCcc
Q 024676          243 FIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~~g  260 (264)
                      |++||.|++|++|++.+.
T Consensus       315 las~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          315 LTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEETTSCEEEEECCC-
T ss_pred             EEEEcCCCeEEEEECCCC
Confidence            889999999999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.7e-41  Score=279.30  Aligned_cols=245  Identities=24%  Similarity=0.312  Sum_probs=210.9

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|+.+|.+++|+|   +|++|++|+.|++|++||+.+++.++.+.+|.+.|.+++|+|++.++++|+.|++|++||
T Consensus        59 ~~~~~h~~~v~~~~~s~---dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd  135 (319)
T 3frx_A           59 RSFKGHSHIVQDCTLTA---DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT  135 (319)
T ss_dssp             EEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             eEEeCCcccEEEEEECC---CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            35679999999999996   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeecCCeEEEEEECCCC------CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           90 ALTGDEKHSFEHKHIVRACAFSEDT------HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      +..........|...|..+.+.|..      ..+++++.|+.|++||++..+.. .....|...+.+++|+|++. ++++
T Consensus       136 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~sp~g~-~l~s  213 (319)
T 3frx_A          136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGT-LIAS  213 (319)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE-EEECCCCSCEEEEEECTTSS-EEEE
T ss_pred             CCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-eeecCCCCcEEEEEEcCCCC-EEEE
Confidence            9765544445688899999999954      48999999999999999865432 34456788999999988654 6777


Q ss_pred             eeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC---------CCCceee
Q 024676          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP---------CNTESAS  234 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~---------~~~~~~~  234 (264)
                      ++.|++|++||+++++++..+..+.++.+++|+|++.+++++.+..+++|++.....+..+...         ....+++
T Consensus       214 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  293 (319)
T 3frx_A          214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA  293 (319)
T ss_dssp             EETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence            8888999999999999998888888999999999999998888888999999988777666421         1234567


Q ss_pred             EcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          235 LEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       235 ~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      ++| +|++|++|+.|+.|++||+.++
T Consensus       294 ~sp-dg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          294 WSA-DGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEEEEEC
T ss_pred             ECC-CCCEEEEeecCceEEEEEEeec
Confidence            777 5999999999999999999775

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.7e-40  Score=273.95  Aligned_cols=250  Identities=26%  Similarity=0.465  Sum_probs=215.0

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ...+.||.++|.+++|+|   +|++|++|+.|+.+++|+..+++....+.+|...|.+++|+|++.++++|+.|+.|++|
T Consensus        16 ~~~~~gh~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEEEcccCCcEEEEEECC---CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            445679999999999996   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      |+.+++.+..+. |...|.++.|+|+++++++|+.|+.|++||+++++. ...+..+...+.+++|++++. ++++++.|
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d  170 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGS-LIVSSSYD  170 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCC-EEEEEeCC
Confidence            999998877775 788999999999999999999999999999987653 244456778899999987655 56677888


Q ss_pred             CeEEEEECCCCceeEEec--CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCC---ceeeEcCCCCC
Q 024676          168 GGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT---ESASLEPKLGN  241 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~  241 (264)
                      +.|++||+++++.+..+.  ...++..++|+|+++++++ +.++.|++||+++++.+..+..+...   ....+.++.+.
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence            999999999998877663  3457999999999988765 56899999999999988888654332   23345555688


Q ss_pred             EEEEecCCCeEEEEEcCcceee
Q 024676          242 IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++++|+.|+.|++||+.+++.+
T Consensus       251 ~l~sg~~dg~i~vwd~~~~~~~  272 (312)
T 4ery_A          251 WIVSGSEDNLVYIWNLQTKEIV  272 (312)
T ss_dssp             EEEECCTTSCEEEEETTTCCEE
T ss_pred             EEEEECCCCEEEEEECCCchhh
Confidence            9999999999999999988754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5e-41  Score=287.79  Aligned_cols=244  Identities=23%  Similarity=0.354  Sum_probs=213.8

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ...+.+|.++|.+|+|+|   +|++|++|+.|++|++||..+++.++++.+|.+.|.+++|+|++.++++|+.|++|++|
T Consensus       143 ~~~l~~h~~~V~~v~~~~---~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w  219 (410)
T 1vyh_C          143 ERTLKGHTDSVQDISFDH---SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW  219 (410)
T ss_dssp             CEEECCCSSCEEEEEECT---TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             EEEEeccCCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            456689999999999996   88999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC----------
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD----------  157 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~----------  157 (264)
                      |+.++.++..+. |...|..+.++|+++++++|+.|++|++||+++++.. ..+..|...+.+++|.|+.          
T Consensus       220 d~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  298 (410)
T 1vyh_C          220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATG  298 (410)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred             ECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-eEecCCCceEEEEEEcCcccccchhhhcc
Confidence            999998877775 7888999999999999999999999999999876543 3445678899999998753          


Q ss_pred             ---------CeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEec
Q 024676          158 ---------QTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       158 ---------~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~  226 (264)
                               +.++++++.|+.|++||+++++++..+.. ...|.+++|+|++++|++ +.|+.|++||+++++++..+..
T Consensus       299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~  378 (410)
T 1vyh_C          299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  378 (410)
T ss_dssp             CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence                     44788889999999999999999888764 567999999999987654 6689999999999998888876


Q ss_pred             CCC-CceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          227 PCN-TESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      +.. ...+.++| .+.+|++||.|+.|++|++
T Consensus       379 h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          379 HEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEETTSEEEEEC-
T ss_pred             CCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Confidence            554 45667777 5889999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=276.11  Aligned_cols=249  Identities=22%  Similarity=0.296  Sum_probs=209.1

Q ss_pred             eeccCCCeeeeEeccCC-CCCeEEEEEeCCCCcEEEeCCCCce--EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           12 CHGHSRPVVDLFYSPIT-PDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~-~~g~~l~t~s~d~~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ..+|.++|++|+|+|.. +++.+|++|+.|++|++|+..+++.  ...+.+|...|.+++|++++.+++|++.|++|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW  107 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            36899999999999843 4678999999999999999887653  45789999999999999999999999999999999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      |+.+++.+..+. +...+..++|+|++++|++++.|+.+++|++++++.. .....+...+.+++|+|++. ++++++.|
T Consensus       108 d~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~-~~~~~~~~~v~~~~~spdg~-~lasg~~d  185 (321)
T 3ow8_A          108 DLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGK-YLASGAID  185 (321)
T ss_dssp             ETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-EEEECSSSCEEEEEECTTSS-EEEEEETT
T ss_pred             ECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-EEecCCCceEEEEEECCCCC-EEEEEcCC
Confidence            999998877765 5667889999999999999999999999999876543 33445667899999998665 56677888


Q ss_pred             CeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEE
Q 024676          168 GGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFI  244 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  244 (264)
                      +.|++||+++++.+..+.. ..+|.+++|+|++++|+++ .|+.|++||+++.+.+..+..+.. ...+.+.| ++.+|+
T Consensus       186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~  264 (321)
T 3ow8_A          186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFV  264 (321)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEE
Confidence            9999999999999888864 4679999999999887765 579999999999988888766544 45677777 588999


Q ss_pred             EecCCCeEEEEEcCcceee
Q 024676          245 AGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       245 ~gs~d~~v~vwd~~~g~~i  263 (264)
                      +|+.|+.|++||+.+++.+
T Consensus       265 s~s~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          265 SSSSDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             EEETTSCEEEEETTTTEEE
T ss_pred             EEeCCCcEEEEeCCCCEEE
Confidence            9999999999999988754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-40  Score=281.65  Aligned_cols=250  Identities=25%  Similarity=0.380  Sum_probs=198.8

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEE----------
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSAS----------   78 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s----------   78 (264)
                      ...+.||+++|.+++|+|   ++++|++|+.|++|++||..+++.+..+.+|...|.+++|+|++.++++          
T Consensus        59 ~~~l~gH~~~V~~~~~sp---~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTP---EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             eecccccccEEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            345689999999999996   8999999999999999999998887778777777777777776655554          


Q ss_pred             ----------------------------------------ecCCCeEEEEeCCCCcEEEEe------ecCCeEEEEEECC
Q 024676           79 ----------------------------------------GSADFTAKLWDALTGDEKHSF------EHKHIVRACAFSE  112 (264)
Q Consensus        79 ----------------------------------------~s~D~~v~iwd~~~~~~~~~~------~~~~~v~~~~~~~  112 (264)
                                                              |+.|++|++||+.++..+..+      .|...|..+.++|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence                                                    455555555555555544443      2566799999977


Q ss_pred             -CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC----
Q 024676          113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----  187 (264)
Q Consensus       113 -~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----  187 (264)
                       +++++++|+.|++|++||++...........|.+.+.+++|+|++. ++++++.|++|++||+++++++..+..+    
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence             7899999999999999999855445566667889999999998655 6778888999999999999988776432    


Q ss_pred             ----CCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEe----cC-CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          188 ----SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYN----MP-CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       188 ----~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                          ..+.+++|+|+|++++++ .++.|++||+...+.+..+.    .+ ....++.++| ++.+|++||.|+.|++|++
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEEC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEEEec
Confidence                237899999999988765 57999999999888776662    22 2345677777 5899999999999999999


Q ss_pred             Ccceee
Q 024676          258 HTGEQI  263 (264)
Q Consensus       258 ~~g~~i  263 (264)
                      ..++++
T Consensus       374 ~~~~~i  379 (380)
T 3iz6_a          374 SGHRKI  379 (380)
T ss_dssp             CSSSSC
T ss_pred             CCCccc
Confidence            877654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=273.31  Aligned_cols=243  Identities=20%  Similarity=0.321  Sum_probs=211.9

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ...+.||..+|.+++|+|   ++.++++++.|++|++||+.+++.+..+.+|...+.+++|+|++.++++|+.|+.|++|
T Consensus        73 ~~~l~gh~~~v~~~~~~~---~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~  149 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISH---TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF  149 (321)
T ss_dssp             EEEECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEE
T ss_pred             eeeeccCCCCEEEEEECC---CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            345689999999999996   78899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      |+.++.....+. +...+..++|+|++++|++|+.|+.|++||+++++.. ..+..|...+.+++|+|++. ++++++.|
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~spd~~-~l~s~s~d  227 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL-HTLEGHAMPIRSLTFSPDSQ-LLVTASDD  227 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCCCEEEECTTSC-EEEEECTT
T ss_pred             EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-EEEcccCCceeEEEEcCCCC-EEEEEcCC
Confidence            999988777664 6678999999999999999999999999999876543 34456788999999998655 67778888


Q ss_pred             CeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEE
Q 024676          168 GGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFI  244 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  244 (264)
                      +.|++||+++++....+.. ...|.+++|+|++.+|++ +.|+.|++||+++++++..+..+. ....+.+.+ ++.+|+
T Consensus       228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~  306 (321)
T 3ow8_A          228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIV  306 (321)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEE
Confidence            9999999999998887764 456999999999987765 568999999999999998886544 445667777 588999


Q ss_pred             EecCCCeEEEEEc
Q 024676          245 AGGEDMWVHVFDF  257 (264)
Q Consensus       245 ~gs~d~~v~vwd~  257 (264)
                      +++.|+.|++||.
T Consensus       307 s~~~d~~i~vwd~  319 (321)
T 3ow8_A          307 SVGDDQEIHIYDC  319 (321)
T ss_dssp             EEETTCCEEEEEC
T ss_pred             EEeCCCeEEEEeC
Confidence            9999999999995

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-39  Score=270.37  Aligned_cols=249  Identities=20%  Similarity=0.297  Sum_probs=210.0

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-----CceEEeeeCCcCCEEEEEECCCCcEEEEecC
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-----~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~   81 (264)
                      .....+.||+++|.+|+|+|  .++++|++|+.|++|++|+...     +..+..+.+|.+.|.+++|++++.+++||+.
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            33445679999999999997  2347999999999999998764     2346789999999999999999999999999


Q ss_pred             CCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC---
Q 024676           82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD---  157 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---  157 (264)
                      |++|++||+.+++....+. |..+|.+++|+|+++++++|+.|++|++||++..  .......|...+..+.+.|..   
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC----
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCC
Confidence            9999999999998877764 8889999999999999999999999999999642  233445678889999998753   


Q ss_pred             --CeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCcee
Q 024676          158 --QTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESA  233 (264)
Q Consensus       158 --~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  233 (264)
                        ...+++++.|+.|++||+++++....+. +..+|.+++++|++++|++ +.|+.|++||+++.+.+..+..+.....+
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~  243 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL  243 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEE
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Confidence              3478888899999999999998877775 4567999999999988765 56899999999999999888877677778


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ++.|+ +.++++++.+ .+++|++.++.
T Consensus       244 ~~sp~-~~~la~~~~~-~i~v~~~~~~~  269 (319)
T 3frx_A          244 AFSPN-RYWLAAATAT-GIKVFSLDPQY  269 (319)
T ss_dssp             EECSS-SSEEEEEETT-EEEEEEETTEE
T ss_pred             EEcCC-CCEEEEEcCC-CcEEEEeCcCe
Confidence            88884 7888877754 59999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.2e-40  Score=269.09  Aligned_cols=246  Identities=20%  Similarity=0.313  Sum_probs=206.5

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|..+|.+++|+|   ++++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|+|++.+++||+.|++|++||
T Consensus        49 ~~~~~~~~~v~~~~~~~---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd  125 (304)
T 2ynn_A           49 RSIQVTETPVRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (304)
T ss_dssp             EEEECCSSCEEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             EEeeccCCcEEEEEEeC---CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEE
Confidence            45578999999999996   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcE-EEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC-CCeEEEEee
Q 024676           90 ALTGDE-KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCT  165 (264)
Q Consensus        90 ~~~~~~-~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~  165 (264)
                      +.++.. ...+ .|...|.+++|+| ++.+|++|+.|++|++||++...........+...+..+++.+. ++.++++++
T Consensus       126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s  205 (304)
T 2ynn_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (304)
T ss_dssp             GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred             CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence            988743 3444 4888999999999 67899999999999999998766555555556678888888763 456788889


Q ss_pred             CCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCC-
Q 024676          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGN-  241 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~-  241 (264)
                      .|++|++||+++++++..+.. ...+.+++|+|++.+|++ +.|++|++||+++++.++.+..+.. ...++++|+++. 
T Consensus       206 ~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (304)
T 2ynn_A          206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN  285 (304)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGG
T ss_pred             CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCce
Confidence            999999999999999888864 467999999999987765 5689999999999999998876543 345667776544 


Q ss_pred             EEEEecCCCeEEEEEcCc
Q 024676          242 IFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~  259 (264)
                      ++++|+.|+ +.+|++..
T Consensus       286 ~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          286 YIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             CEEEEETTE-EEEEECC-
T ss_pred             EEEEecCCc-eEEEEecc
Confidence            466776554 78888754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-39  Score=271.93  Aligned_cols=248  Identities=18%  Similarity=0.322  Sum_probs=211.1

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ...+.||.++|.+++|+|   ++++|++|+.|++|++||..+++.+..+..|...|.+++|+|++.++++|+.|+.+++|
T Consensus        48 ~~~l~gH~~~v~~~~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGT---DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             heeecCCCCceEEEEECC---CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            345689999999999996   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCc----EEEE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           89 DALTGD----EKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        89 d~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      |+.++.    .... ..|...|.++.|++++. +++++.|++|++||+++++.. ..+..|.+.+.+++|+|++. ++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~~~~~~-~l~s  201 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT-TTFTGHTGDVMSLSLAPDTR-LFVS  201 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE-EEEcCCCCceEEEEECCCCC-EEEE
Confidence            998753    2222 24888999999998875 889999999999999876543 34456788999999998654 6777


Q ss_pred             eeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC---CCceeeEcCC
Q 024676          164 CTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPK  238 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~  238 (264)
                      ++.|+.|++||+++++++..+.. ..+|.+++|+|++.++++ +.|+.|++||+++.+.+..+....   ...++.++| 
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-  280 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-  280 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-
Confidence            88889999999999998888864 567999999999987765 568999999999988877775432   345667777 


Q ss_pred             CCCEEEEecCCCeEEEEEcCcceee
Q 024676          239 LGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+.+|++|+.|+.|++||+.+++.+
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~~~~  305 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEECCCCeEEEEEcccCcEe
Confidence            5899999999999999999877653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.6e-39  Score=271.15  Aligned_cols=250  Identities=20%  Similarity=0.268  Sum_probs=212.4

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ...+.||..+|.+|+|+|   ++++|++|+.|++|++||..+++....+..|...|.+++|+|++.++++|+.|+.+++|
T Consensus        57 ~~~l~gH~~~V~~~~~s~---d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCK---DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             EEEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             EEEecCCCCeEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            455689999999999996   89999999999999999999999888999999999999999999999999999999999


Q ss_pred             eCCCCc-------EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC-CCeE
Q 024676           89 DALTGD-------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTI  160 (264)
Q Consensus        89 d~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~  160 (264)
                      ++....       ......|...|..+.|+|+++.|++++.|++|++||+++++.. ..+..|...+.++++.+. ++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECCCSSCCE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEcCCCCCeEEEEEEeCCCCCE
Confidence            986431       2223358889999999999999999999999999999877643 344567888999998875 3467


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC---CCceeeE
Q 024676          161 LSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASL  235 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~~~  235 (264)
                      +++++.|++|++||+++++++..+.. ..+|++++|+|++.++++ +.|++|++||++..+.+..+....   ....+.+
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            88888999999999999999888864 567999999999987765 568999999999988777665432   2345667


Q ss_pred             cCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          236 EPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       236 ~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+ .+.+|++|+.|+.|++||+.+|+.+
T Consensus       293 s~-~g~~l~~g~~d~~i~vwd~~~~~~~  319 (354)
T 2pbi_B          293 SL-SGRLLFAGYNDYTINVWDVLKGSRV  319 (354)
T ss_dssp             CT-TSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             eC-CCCEEEEEECCCcEEEEECCCCceE
Confidence            76 5899999999999999999888754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-39  Score=272.77  Aligned_cols=245  Identities=18%  Similarity=0.249  Sum_probs=201.9

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|..+|.+++|+|   ++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++.++++++.|++|++||
T Consensus        70 ~~l~~h~~~V~~~~~~~---~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQ---ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN  146 (343)
T ss_dssp             EEECCCSSCEEEEEECS---STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred             chhccCCCceEEEEECC---CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence            45679999999999996   889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEe---ecCCeEEEEEECCCC----------CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC
Q 024676           90 ALTGDEKHSF---EHKHIVRACAFSEDT----------HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        90 ~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  156 (264)
                      +.........   .|...|.+++|+|++          .++++++.|+.|++||.+. + .......|...+.+++|+|+
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~-~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q-IRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E-EEEEEECCSSCEEEEEECTT
T ss_pred             ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c-eeEEEcCccccceEEEECCC
Confidence            9744332222   477789999999986          7899999999999999532 2 22344567889999999986


Q ss_pred             CCeEEEEeeCCCeEEEEECC-CCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee--EEe--------
Q 024676          157 DQTILSSCTDSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYN--------  225 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~--~~~--------  225 (264)
                      +. ++++++.|+.|++||++ .......+.....+.+++|+|++.+++++.++.|++||+.+.+...  .+.        
T Consensus       225 g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  303 (343)
T 2xzm_R          225 GK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE  303 (343)
T ss_dssp             SS-EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred             CC-EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence            55 56777888999999994 4445555656667999999999999988888899999998766544  222        


Q ss_pred             ---cC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          226 ---MP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       226 ---~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                         .+ ....+++++| ++.+|++|+.|+.|++|++.+|+
T Consensus       304 ~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          304 GQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             TBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEEEE
T ss_pred             hhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEccC
Confidence               11 1234567877 58899999999999999998876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.6e-40  Score=275.29  Aligned_cols=244  Identities=17%  Similarity=0.204  Sum_probs=200.5

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE----EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~----~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      ..+|...|.+|+|+|   ++++ ++++.|++|++||+.+++..    ....+|.+.|.+++|+|++.++++|+.|++|++
T Consensus        90 ~~~~~~~V~~~~~s~---d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           90 GVQTEAGVTDVAWVS---EKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             EEECSSCEEEEEEET---TTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             cCCCCCCEEEEEEcC---CCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            357999999999996   6654 57889999999999887643    234589999999999999999999999999999


Q ss_pred             EeCCCCcEEEEee-cCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCCCCCeE-eccCCCCeEEEEEecCCCeEEEEe
Q 024676           88 WDALTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        88 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ||+.+++.+..+. |...|++++|+|++. ++++++.|+.|++||+++++..... ...+...+.+++|+|+++.+++++
T Consensus       166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g  245 (357)
T 4g56_B          166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG  245 (357)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe
Confidence            9999998888775 788999999999874 7889999999999999877654332 334567789999999888889999


Q ss_pred             eCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCC-cEEE-EeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCC
Q 024676          165 TDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDG-RYIT-TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (264)
                      +.|+.|++||+++++++..+.. ..+|.+++|+|++ ++|+ ++.|++|+|||++++++++.+........++|+|.++.
T Consensus       246 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~  325 (357)
T 4g56_B          246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHS  325 (357)
T ss_dssp             ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTT
T ss_pred             ecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCC
Confidence            9999999999999998888864 4679999999987 5565 46789999999999988876655555667788886789


Q ss_pred             EEEEecCCCeEEEEEcCc
Q 024676          242 IFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~  259 (264)
                      +|++||.|++|++||+.+
T Consensus       326 ~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          326 KFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EEEEEETTSCEEEEECC-
T ss_pred             EEEEEcCCCeEEEEECCC
Confidence            999999999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.9e-39  Score=266.31  Aligned_cols=245  Identities=18%  Similarity=0.261  Sum_probs=197.3

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC--ceEEeeeCCcCCEEEEEECCC--CcEEEEecCCCeE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTA   85 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~--~~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v   85 (264)
                      .++.+|.++|.+++|+|   +|++||+|+.|++|++|+..++  +.+.++.+|.++|.+++|+++  +.+|+||+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~---~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDY---YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             EECCSCSSCEEEEEECT---TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             eeccCCcCceEEEEECC---CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            34679999999999996   8999999999999999998753  567899999999999999864  8899999999999


Q ss_pred             EEEeCCCCc--EEEEe-ecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCC--
Q 024676           86 KLWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSD--  157 (264)
Q Consensus        86 ~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~--  157 (264)
                      ++||+.++.  .+..+ .|...|.+++|+|+  +++|++++.|+.|++||++.+.. .......|...+.+++|+|..  
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence            999998764  33333 37889999999997  88999999999999999976532 234455678899999999853  


Q ss_pred             ----------CeEEEEeeCCCeEEEEECCCCc----eeEEec-CCCCEEEEEEcCCC---cEEEE-eCCCcEEEEECCCc
Q 024676          158 ----------QTILSSCTDSGGVRLWDARSGK----IVQTLE-TKSPVTSAEVSRDG---RYITT-ADGSSVKFWDANHF  218 (264)
Q Consensus       158 ----------~~~~~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~s~~~---~~l~~-~~~~~i~iwd~~~~  218 (264)
                                ..++++++.|++|++||+++++    ....+. +...|.+++|+|++   .+|++ +.|++|++||++..
T Consensus       160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence                      3578888999999999998876    444555 45679999999985   66654 67899999999764


Q ss_pred             ee---eeEE---ecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          219 GL---VKGY---NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       219 ~~---~~~~---~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ..   ...+   ........++|+| ++.+|++++.|+.|++|+..
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          240 QGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred             CCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence            21   1122   1123344667777 58899999999999999976

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1e-38  Score=265.16  Aligned_cols=247  Identities=24%  Similarity=0.372  Sum_probs=198.7

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-----eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----WIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-----~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      .+.||+++|++|+|+|.  ++++|+|||.|++|++||+.+++     ..+.+.+|.+.|.+++|+|++.++++|+.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~--~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQ--FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTT--CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCC--CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            46899999999999972  36899999999999999987653     456789999999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEee--------------------------------------------cCCeEEEEEECCC--CCEEEE
Q 024676           86 KLWDALTGDEKHSFE--------------------------------------------HKHIVRACAFSED--THLLLT  119 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~--------------------------------------------~~~~v~~~~~~~~--~~~l~s  119 (264)
                      ++|+...........                                            |...+..++++++  ..++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            999986654322111                                            3445667777664  356777


Q ss_pred             eeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCC
Q 024676          120 GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG  199 (264)
Q Consensus       120 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~  199 (264)
                      ++.|+.|++||+++++.. .....|.+.+.+++|+|++. ++++++.|+.|++||+++.+++..+..+..+.++.++|++
T Consensus       191 ~~~d~~i~i~d~~~~~~~-~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  268 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLK-TNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR  268 (340)
T ss_dssp             EETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred             EcCCCEEEEEECCCCcee-eEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence            888888888888765432 33445778999999988654 6777788899999999999999999888899999999999


Q ss_pred             cEEEEeCCCcEEEEECCCceeeeEEec----------CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          200 RYITTADGSSVKFWDANHFGLVKGYNM----------PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       200 ~~l~~~~~~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .+++++.|+.|++||+++...+..+..          ......+++.| ++++|++||.|+.|++||+++|.+
T Consensus       269 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          269 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC---
T ss_pred             ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcCC
Confidence            999998899999999998877766542          12234567777 589999999999999999999964

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=272.34  Aligned_cols=245  Identities=16%  Similarity=0.170  Sum_probs=197.6

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-----------ceEEeeeCCcCCEEEEEECCCCcEEEEecC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----------DWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-----------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~   81 (264)
                      ..|...|.+++|+|   ||++|++++ |+++++||....           ........|+..|.+++|++++ .+++|+.
T Consensus        27 ~~~~~~v~~~~fs~---dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~  101 (344)
T 4gqb_B           27 ACMERQLEAARYRS---DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD  101 (344)
T ss_dssp             SSCCSEEEEEEECT---TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred             ccccCCEEEEEECC---CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence            35778899999996   999999888 888888874211           1111223367889999999986 5679999


Q ss_pred             CCeEEEEeCCCCcEEEEe-----ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC
Q 024676           82 DFTAKLWDALTGDEKHSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  156 (264)
                      ||+|+|||+.+++.....     .|...|++++|+|++++|++|+.|++|++||+++++.. ..+..|.+.+.+++|+++
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~-~~~~~h~~~V~~~~~~~~  180 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL-SSYRAHAAQVTCVAASPH  180 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECSS
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-EEEcCcCCceEEEEecCC
Confidence            999999999988644332     48889999999999999999999999999999876543 445568899999999998


Q ss_pred             CCeEEEEeeCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCC-cEEEE-eCCCcEEEEECCCceeeeEEecCCC-C
Q 024676          157 DQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGLVKGYNMPCN-T  230 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~  230 (264)
                      +..++++++.|++|++||++++++...+..   ...+.+++++|++ +++++ +.|+.|++||+++++++..+..+.. .
T Consensus       181 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v  260 (344)
T 4gqb_B          181 KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV  260 (344)
T ss_dssp             CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCE
T ss_pred             CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCE
Confidence            888889999999999999999998877643   3468999999964 66654 5689999999999999998887554 4


Q ss_pred             ceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ..+.|+|+...+|++||.|++|++||+.+++.+
T Consensus       261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~  293 (344)
T 4gqb_B          261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF  293 (344)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence            567788865578999999999999999988753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-38  Score=265.17  Aligned_cols=241  Identities=20%  Similarity=0.318  Sum_probs=205.8

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc----eEEeeeCCcCCEEEEEECCCCcEEEEecCCCe
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----WIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~----~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~   84 (264)
                      ...+.+|...|.+++|+|   +|++|++|+.|+.+++|++.+++    ....+.+|.+.|.++.|++++. +++++.|++
T Consensus        90 ~~~~~~~~~~v~~~~~s~---~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~  165 (340)
T 1got_B           90 VHAIPLRSSWVMTCAYAP---SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTT  165 (340)
T ss_dssp             EEEEECSSSCEEEEEECT---TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSC
T ss_pred             ceEeecCCccEEEEEECC---CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCc
Confidence            344568999999999996   89999999999999999998753    4567889999999999998876 789999999


Q ss_pred             EEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           85 AKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        85 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      |++||+.++.....+. |...|.+++|+|+++++++|+.|+.|++||++++... ..+..|...+.+++|+|++. ++++
T Consensus       166 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~-~l~s  243 (340)
T 1got_B          166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGN-AFAT  243 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE-EEEcCCcCCEEEEEEcCCCC-EEEE
Confidence            9999999998887775 8889999999999999999999999999999876532 44556788999999998654 6677


Q ss_pred             eeCCCeEEEEECCCCceeEEecCC---CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCC
Q 024676          164 CTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPK  238 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~  238 (264)
                      ++.|++|++||+++++.+..+.+.   ..+.+++|+|+++++++ +.|+.|++||+.+.+.+..+..+.. ...+.+.| 
T Consensus       244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-  322 (340)
T 1got_B          244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-  322 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-
T ss_pred             EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-
Confidence            888899999999999887777543   36999999999988765 5689999999999988888876554 44566776 


Q ss_pred             CCCEEEEecCCCeEEEEE
Q 024676          239 LGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd  256 (264)
                      ++.+|++||.|+.|++||
T Consensus       323 dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEcCCccEEecC
Confidence            589999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-38  Score=265.16  Aligned_cols=252  Identities=23%  Similarity=0.308  Sum_probs=200.4

Q ss_pred             ecceEeeccCCCeeeeEecc--CC-CCCeEEEEEeCCCCcEEEeCCCC-------ceEEeeeCCcCCEEEEEECCCCcEE
Q 024676            7 AVPLVCHGHSRPVVDLFYSP--IT-PDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANALFS   76 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~--~~-~~g~~l~t~s~d~~v~i~~~~~~-------~~~~~~~~H~~~V~~v~~~~~~~~l   76 (264)
                      ....++.||+++|.+|+|.+  .+ +++++|++|+.|++|++|++.+.       .....+.+|.+.|.+++|+|++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            34456689999999999922  12 38999999999999999998653       3456789999999999999999999


Q ss_pred             EEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE--eccCCCCeEEEEE
Q 024676           77 ASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAW  153 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~  153 (264)
                      +||+.|++|++||+.+++.+..+. |..+|.+++|+|++++|++++.|++|++||+.... ....  ...+...+.+++|
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeee
Confidence            999999999999999998877765 88999999999999999999999999999986321 1111  1246678999999


Q ss_pred             ecCCC---------eEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCC-ceee
Q 024676          154 LHSDQ---------TILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH-FGLV  221 (264)
Q Consensus       154 ~~~~~---------~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~-~~~~  221 (264)
                      .|.+.         .++++++.|+.|++||. +.+....+. +..+|.+++|+|+|++|++ +.|+.|++||++. ....
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~  249 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ  249 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            88652         46788888999999994 455555554 5567999999999988765 5689999999954 3445


Q ss_pred             eEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          222 KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ..+........++++|+ +.+++ ++.|+.|++||+.+++.
T Consensus       250 ~~~~~~~~v~~v~~sp~-~~~la-~~~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          250 REFDAGSTINQIAFNPK-LQWVA-VGTDQGVKIFNLMTQSK  288 (343)
T ss_dssp             EEEECSSCEEEEEECSS-SCEEE-EEESSCEEEEESSSCCS
T ss_pred             eeecCCCcEEEEEECCC-CCEEE-EECCCCEEEEEeCCCCC
Confidence            55555555667788874 66665 55688899999887653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-39  Score=266.09  Aligned_cols=243  Identities=16%  Similarity=0.238  Sum_probs=187.0

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-------CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-------~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      +|..+|.+|+|+|   ++++|++|+.|++|++|+...       .+.+..+.+|.+.|.+++|+|++.+|++|+.|++|+
T Consensus        56 ~h~~~v~~v~~sp---~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~  132 (330)
T 2hes_X           56 AHKKAIRSVAWRP---HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW  132 (330)
T ss_dssp             CCCSCEEEEEECT---TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEE
T ss_pred             CccCCEEEEEECC---CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEE
Confidence            3999999999996   889999999999999999853       345678899999999999999999999999999999


Q ss_pred             EEeCCCC----cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCC-Ce
Q 024676           87 LWDALTG----DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSD-QT  159 (264)
Q Consensus        87 iwd~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~  159 (264)
                      +||+...    +.+..+ .|...|.+++|+|++++|++++.|++|++||++.+.. ....+..|.+.+.+++|.|++ ..
T Consensus       133 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  212 (330)
T 2hes_X          133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF  212 (330)
T ss_dssp             EEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred             EEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee
Confidence            9999432    234444 4888999999999999999999999999999865421 223455688899999998864 45


Q ss_pred             EEEEeeCCCeEEEEECCCC--------ceeEEec--CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCce--eeeEE-ec
Q 024676          160 ILSSCTDSGGVRLWDARSG--------KIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG--LVKGY-NM  226 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~--------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~--~~~~~-~~  226 (264)
                      .+++++.|++|++||++++        .+...+.  +..+|.+++|++++.+++++.|+.|++||...++  .+... ..
T Consensus       213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  292 (330)
T 2hes_X          213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC  292 (330)
T ss_dssp             EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred             EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence            6888899999999999765        3334443  4567999999998877788889999999987763  23222 22


Q ss_pred             CC--CCceeeEcCC-CCCEEEEecCCCeEEEEEcCc
Q 024676          227 PC--NTESASLEPK-LGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       227 ~~--~~~~~~~~~~-~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      +.  ....+.+.|. ++.+|++||.|+.|++||+.+
T Consensus       293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            22  3445667763 478999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-38  Score=268.84  Aligned_cols=244  Identities=20%  Similarity=0.345  Sum_probs=198.8

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcC------------------CEEEEEECCCCc
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG------------------AVWSCCLDANAL   74 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~------------------~V~~v~~~~~~~   74 (264)
                      .+|...|.+++|+|   ||++||+|+ |+.+++|+..+++.+..+.+|..                  .|.+++|+|++.
T Consensus        61 ~~h~~~V~~v~fsp---dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           61 LDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             EECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             cCCCCEEEEEEECC---CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            37999999999996   999999977 78999999999998888876643                  389999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEE
Q 024676           75 FSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  153 (264)
                      ++++|+.|++|++||+.+++....+. |...|.+++|+|++++|++++.|+++++||+++++....  ..+...+.++++
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~  214 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAV  214 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE--EEcCCCcEEEEE
Confidence            99999999999999999988777765 888999999999999999999999999999987653222  234567899999


Q ss_pred             ecCCCeEEEEeeCCCeEEEEECCCCceeEEe--------cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCce-----
Q 024676          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTL--------ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG-----  219 (264)
Q Consensus       154 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~-----  219 (264)
                      +|.++.++++++.|+.|++||+++++.+..+        .+...|.+++|+|+++++++ +.|+.|++||+++..     
T Consensus       215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  294 (393)
T 1erj_A          215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  294 (393)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence            9867778888899999999999999877665        23467999999999988765 568999999997642     


Q ss_pred             -------eeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          220 -------LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       220 -------~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                             +...+..+.. ...+.+.+ .+.+|++||.|+.|++||+.+|+.+
T Consensus       295 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          295 KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL  345 (393)
T ss_dssp             ------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE
Confidence                   2334433333 34556666 5889999999999999999988764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-39  Score=273.77  Aligned_cols=246  Identities=18%  Similarity=0.222  Sum_probs=196.2

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeC------CCCcEEEeCCCCceE----EeeeCCcCCEEEEEECCCCcEEEEecCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASK------DSSPMLRNGETGDWI----GTFEGHKGAVWSCCLDANALFSASGSAD   82 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~------d~~v~i~~~~~~~~~----~~~~~H~~~V~~v~~~~~~~~l~s~s~D   82 (264)
                      .+|++.|.+|+|+|   ||++||+||.      |+.+++|+..++...    ....+|.+.|.+++|+|++.++ +++.|
T Consensus        39 ~~H~~~V~~v~fSp---DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d  114 (357)
T 4g56_B           39 ACMEVQIGAVRYRR---DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS  114 (357)
T ss_dssp             -CCCSEEEEEEECS---SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT
T ss_pred             ccccCCEEEEEECC---CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECC
Confidence            57999999999996   9999999998      677899988777543    3345699999999999998655 57789


Q ss_pred             CeEEEEeCCCCcEEE-----EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC
Q 024676           83 FTAKLWDALTGDEKH-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  157 (264)
                      ++|+|||+.+++...     ...|..+|++++|+|++++|++|+.|+.|++||+++++.. ..+..|...+.+++|++++
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~-~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL-KSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTC
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEccCC
Confidence            999999998875432     2358889999999999999999999999999999876543 3445678899999999888


Q ss_pred             CeEEEEeeCCCeEEEEECCCCceeEEec---CCCCEEEEEEcCCC-cEEEE-eCCCcEEEEECCCceeeeEEecCCC-Cc
Q 024676          158 QTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TE  231 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~  231 (264)
                      ..++++++.|++|++||++++++...+.   ....+.+++|+|++ .++++ +.++.|++||+++.+.++.+..+.. ..
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~  273 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNIT  273 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEE
T ss_pred             CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEE
Confidence            7788888899999999999998765543   34569999999985 56655 5689999999999998888876544 45


Q ss_pred             eeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+++.|+.+.+|++||.|++|+|||+.+++.+
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            67788876688999999999999999988764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-38  Score=263.99  Aligned_cols=206  Identities=22%  Similarity=0.360  Sum_probs=170.4

Q ss_pred             eecceEeeccCC-CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE---eeeCCcCCEEEEEECCCCcEEEEecC
Q 024676            6 VAVPLVCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG---TFEGHKGAVWSCCLDANALFSASGSA   81 (264)
Q Consensus         6 ~~~~~~~~~h~~-~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~---~~~~H~~~V~~v~~~~~~~~l~s~s~   81 (264)
                      +.....+.+|.. +|++|+|+|   +|++||+|+.|++|++|+..+++...   ...+|.+.|.+++|+|++.+|++|+.
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp---~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECT---TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeeeecCCCCCcEEEEEECC---CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence            344556679998 999999996   89999999999999999998876432   23689999999999999999999999


Q ss_pred             CCeEEEEeCCCCc--EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC--CeEeccCCCCeEEEEEecC
Q 024676           82 DFTAKLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHS  156 (264)
Q Consensus        82 D~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~  156 (264)
                      |+++++||..++.  ....+ .|..+|.+++|+|++++|++|+.|+.|++||++.+...  ......|...+.+++|+|+
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            9999999988764  34444 48889999999999999999999999999999765432  2334567888999999987


Q ss_pred             CCeEEEEeeCCCeEEEEECCCCce--eEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676          157 DQTILSSCTDSGGVRLWDARSGKI--VQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~  215 (264)
                      +. ++++++.|+.|++||.++++.  ...+. +...|.+++|+|++++|++ +.|++|++||.
T Consensus       162 ~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          162 QE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             SS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            65 566778889999999988753  34554 4567999999999988765 56899999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.3e-38  Score=266.64  Aligned_cols=241  Identities=21%  Similarity=0.295  Sum_probs=199.6

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      ..|.+++|+|   +|++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|+|++.++++++.|++|++||+.+++..
T Consensus       124 ~~v~~v~~s~---dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          124 LYIRSVCFSP---DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             CBEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeEEEEEECC---CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence            3589999996   8999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeE------eccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           97 HSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPRE------VGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        97 ~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      ..+.+...+..++++| +++++++|+.|+.|++||+++++.....      ...|...+.+++|++++. ++++++.|+.
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~  279 (393)
T 1erj_A          201 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRS  279 (393)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred             EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCE
Confidence            8888888999999999 8999999999999999999876532221      134678899999998665 5667788899


Q ss_pred             EEEEECCCCc------------eeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-Cceee
Q 024676          170 VRLWDARSGK------------IVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESAS  234 (264)
Q Consensus       170 v~iwd~~~~~------------~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~  234 (264)
                      |++||+++..            +...+. +...|.+++++|++.+|++ +.|+.|++||+++++.+..+..+.. .....
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~  359 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA  359 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEE
Confidence            9999998642            333343 4457999999999988765 5689999999999998888876544 33455


Q ss_pred             EcC-----CCCCEEEEecCCCeEEEEEcCcce
Q 024676          235 LEP-----KLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       235 ~~~-----~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      +.+     +.+.+|++||.|+.|++|++...+
T Consensus       360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          360 VANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             ecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence            543     247899999999999999986543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.2e-38  Score=282.43  Aligned_cols=248  Identities=22%  Similarity=0.300  Sum_probs=198.9

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-------CCcCCEEEEEECCCCcEEEEecC
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSCCLDANALFSASGSA   81 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-------~H~~~V~~v~~~~~~~~l~s~s~   81 (264)
                      ...+.+|...|.+++|+|   +|++|++|+.|++|++|+..+++.+..+.       +|.+.|.+++|+|++.+++|++.
T Consensus       183 ~~~l~~H~~~V~~v~fsp---dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          183 KSTFGEHTKFVHSVRYNP---DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             eeeeccccCceEEEEECC---CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence            345679999999999996   89999999999999999999999888884       79999999999999999999999


Q ss_pred             CCeEEEEeCCCCcEEEEe--------------------------------------------ecCCeEEEEEECCCCCEE
Q 024676           82 DFTAKLWDALTGDEKHSF--------------------------------------------EHKHIVRACAFSEDTHLL  117 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~--------------------------------------------~~~~~v~~~~~~~~~~~l  117 (264)
                      |++|++||+.+++....+                                            .|...|++++|+|++++|
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l  339 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL  339 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence            999999999887654332                                            367789999999999999


Q ss_pred             EEeeCCCcEEEeeCCCCCCCCeE---------------------------------------------------------
Q 024676          118 LTGGFEKILRIFDLNRPDAPPRE---------------------------------------------------------  140 (264)
Q Consensus       118 ~s~~~d~~i~~~d~~~~~~~~~~---------------------------------------------------------  140 (264)
                      ++++.|++|++||+.+++.....                                                         
T Consensus       340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (611)
T 1nr0_A          340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV  419 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred             EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence            99999999999998754321000                                                         


Q ss_pred             ------------------------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--eEEecCCCCEEEEE
Q 024676          141 ------------------------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAE  194 (264)
Q Consensus       141 ------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~  194 (264)
                                              ...+...+.+++++|++. ++++++.|++|++||+++++.  +....+...|.+++
T Consensus       420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~  498 (611)
T 1nr0_A          420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA  498 (611)
T ss_dssp             CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred             eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC-EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEE
Confidence                                    000123456788877654 677788889999999987653  23445667899999


Q ss_pred             EcCCCcEEEE-eCCCcEEEEECCC-ceeeeE--Ee-cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          195 VSRDGRYITT-ADGSSVKFWDANH-FGLVKG--YN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       195 ~s~~~~~l~~-~~~~~i~iwd~~~-~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      |+|||++|++ +.|++|++||+.+ ++.+..  +. ......+++|+| ++++|++||.|++|++||+.+++
T Consensus       499 fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          499 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTT
T ss_pred             ECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCcc
Confidence            9999998876 5689999999987 555443  22 223345677877 58999999999999999998765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6e-38  Score=285.21  Aligned_cols=244  Identities=25%  Similarity=0.345  Sum_probs=208.4

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|...|.++.|+|   +|++|++|+.|++|++||+.+++.++.+.+|.+.|.+++|+|++.+++||+.|++|++||
T Consensus       424 ~~~~~h~~~v~~v~~s~---~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSS---DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceecCCCCcEEEEEECC---CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            35679999999999996   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEe----ecCCeEEEEEECCCC--CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           90 ALTGDEKHSF----EHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        90 ~~~~~~~~~~----~~~~~v~~~~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      ..........    .|...|.+++|+|++  ..+++++.|++|++||+++.+. ...+..|.+.+.+++|+|++ .++++
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~-~~~~~~h~~~v~~v~~spdg-~~l~s  578 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDG-SLCAS  578 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCC-CEEEE
Confidence            8665433332    367789999999986  6899999999999999986653 34455688899999999865 46777


Q ss_pred             eeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC--------------
Q 024676          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN--------------  229 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~--------------  229 (264)
                      ++.|+.|++||+++++++..+..+..+.+++|+|++.+++++.++.|++||+++.+.+..+.....              
T Consensus       579 g~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (694)
T 3dm0_A          579 GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT  658 (694)
T ss_dssp             EETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred             EeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence            888899999999999998888888889999999999999888888899999999988777653211              


Q ss_pred             ------CceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          230 ------TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       230 ------~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                            ..++.++| ++++|++||.|+.|++||+..
T Consensus       659 ~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          659 KRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             --CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred             CceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEeccC
Confidence                  23456777 589999999999999999853

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=259.18  Aligned_cols=248  Identities=20%  Similarity=0.246  Sum_probs=191.2

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC--ceEEee-eC-CcCCEEEEEECCCCcEEEEecC
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTF-EG-HKGAVWSCCLDANALFSASGSA   81 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~--~~~~~~-~~-H~~~V~~v~~~~~~~~l~s~s~   81 (264)
                      +.....+.+|.++|.++.|+|   +  +|++|+.|++|++|++.++  +.+..+ .+ |.+.|.+++|+|++.++++|+.
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~---~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQ---G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEET---T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             cccceeeccCCCceeeeccCC---C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence            445566789999999999996   4  8999999999999999875  345556 44 9999999999999999999999


Q ss_pred             CCeEEEEeCCCC-------cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC---CeEeccCCCCeEE
Q 024676           82 DFTAKLWDALTG-------DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRT  150 (264)
Q Consensus        82 D~~v~iwd~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~~~i~~  150 (264)
                      |++|+|||....       .....+ .|...|.+++|+|++++|++|+.|++|++||++.....   ...+..|...+.+
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred             CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence            999999998532       233444 48889999999999999999999999999999543221   2334567889999


Q ss_pred             EEEecCCCeEEEEeeCCCeEEEEECCCC--ceeEEec-CCCCEEEEEEcCC--CcEE-EEeCCCcEEEEECCCc------
Q 024676          151 VAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLE-TKSPVTSAEVSRD--GRYI-TTADGSSVKFWDANHF------  218 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~s~~--~~~l-~~~~~~~i~iwd~~~~------  218 (264)
                      ++|+|++ .++++++.|++|++||.+++  +++..+. +...|.+++|+|+  +.++ +++.|++|++||++..      
T Consensus       159 v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          159 VIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             EEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred             EEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence            9999865 46778888999999999876  5666665 4567999999998  5555 4567899999998754      


Q ss_pred             --eeeeEEec-C-CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          219 --GLVKGYNM-P-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       219 --~~~~~~~~-~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                        .+...+.. + .....+.+.+  +.+|++|+.|+.|++||..+++
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~s~--~~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          238 EWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEEEEEECCSCCSSCEEEEEECT--TSCEEEEETTSCEEEEEEETTE
T ss_pred             eeEEeeecccccccceEEEEEcC--CCEEEEEeCCCEEEEEEcCCCc
Confidence              23333332 2 2344556664  4589999999999999987764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-38  Score=264.07  Aligned_cols=244  Identities=19%  Similarity=0.224  Sum_probs=189.2

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECC--CCcEEEEecCCCeEE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK   86 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~--~~~~l~s~s~D~~v~   86 (264)
                      ++.+|+++|.+++|+|   +|++|++|+.|++|++||+.+++  .+.++.+|.++|.+++|++  ++.+|+||+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~---~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDY---YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECG---GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcC---CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            3469999999999996   89999999999999999998774  4678999999999999986  478999999999999


Q ss_pred             EEeCCCCc--EEEEe-ecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCC--CeEeccCCCCeEEEEEecCC--
Q 024676           87 LWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSD--  157 (264)
Q Consensus        87 iwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~--  157 (264)
                      +||+.++.  ....+ .|...|++++|+|+  +.+|++|+.|+.|++||++.+...  ......|...+.+++|.|+.  
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99998874  34444 48889999999997  789999999999999998764311  12334567778888888752  


Q ss_pred             --------------CeEEEEeeCCCeEEEEECCCC---ceeEEec-CCCCEEEEEEcCCC----cEEE-EeCCCcEEEEE
Q 024676          158 --------------QTILSSCTDSGGVRLWDARSG---KIVQTLE-TKSPVTSAEVSRDG----RYIT-TADGSSVKFWD  214 (264)
Q Consensus       158 --------------~~~~~~~~~d~~v~iwd~~~~---~~~~~~~-~~~~v~~~~~s~~~----~~l~-~~~~~~i~iwd  214 (264)
                                    ..++++++.|++|++||+++.   +++..+. +..+|.+++|+|++    .+|+ ++.|++|++||
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                          246888899999999999865   3445554 44679999999986    5554 56789999999


Q ss_pred             CCCce----eeeEEe-cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          215 ANHFG----LVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       215 ~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ++...    ..+.+. .......++|+| .+.+|++|+.|+.|++|+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence            87621    112222 234455677887 48899999999999999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.9e-37  Score=257.23  Aligned_cols=241  Identities=19%  Similarity=0.262  Sum_probs=204.1

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC------ceEEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------DWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~------~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      .....|...|.+++|+|   +|++|++|+.|+.+++|+....      .....+.+|.+.|.+++|++++..+++++.|+
T Consensus       100 ~~~~~~~~~v~~~~~sp---~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~  176 (354)
T 2pbi_B          100 HAVTMPCTWVMACAYAP---SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG  176 (354)
T ss_dssp             EEEECSSSCCCEEEECT---TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS
T ss_pred             eEEecCCCCEEEEEECC---CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC
Confidence            34567889999999996   8999999999999999988643      23567788999999999999999999999999


Q ss_pred             eEEEEeCCCCcEEEEee-cCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           84 TAKLWDALTGDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      +|++||+.+++.+..+. |...|.++.++|  ++++|++|+.|+.+++||+++++.. ..+..|...+.+++|+|++. +
T Consensus       177 ~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~-~  254 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV-QAFETHESDVNSVRYYPSGD-A  254 (354)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSS-E
T ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE-EEecCCCCCeEEEEEeCCCC-E
Confidence            99999999999888775 888999999988  4689999999999999999876543 34456788999999998654 6


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEecCC---CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeE
Q 024676          161 LSSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASL  235 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~  235 (264)
                      +++++.|++|++||+++++.+..+...   ..+.+++|+|++.++++ +.|+.|++||+.+++.+..+..+.. ...+.+
T Consensus       255 l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  334 (354)
T 2pbi_B          255 FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV  334 (354)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEE
Confidence            778888999999999998877666533   36899999999998765 5689999999999988877765544 446677


Q ss_pred             cCCCCCEEEEecCCCeEEEEE
Q 024676          236 EPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       236 ~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      +| ++.+|++||.|+.|++|+
T Consensus       335 sp-dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          335 SP-DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CT-TSSCEEEEETTSEEEEEC
T ss_pred             CC-CCCEEEEEcCCCCEEecC
Confidence            77 589999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.6e-37  Score=281.05  Aligned_cols=248  Identities=19%  Similarity=0.263  Sum_probs=206.9

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-----ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-----~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      .+.+|++.|.+|+|+|  .++++|+|||.|++|++|++.+.     ...+.+.+|.+.|.+++|+|++.+++||+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~--~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPI--DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCT--TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecC--CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            4679999999999997  34579999999999999998764     3456789999999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE---eccCCCCeEEEEEecCC-CeE
Q 024676           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---VGNSSGSIRTVAWLHSD-QTI  160 (264)
Q Consensus        86 ~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i~~~~~~~~~-~~~  160 (264)
                      +|||+.++.....+ .|...|.+++|+|++++|++|+.|++|++||+..... ...   ...|...+.+++|+|++ ...
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcce
Confidence            99999999877766 4889999999999999999999999999999754321 111   12466789999999865 347


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCC
Q 024676          161 LSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPK  238 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (264)
                      +++++.|++|++||++++++...+.. ...|.+++++|+++++++ +.|+.|++||+++++.+..+..+.....++++|+
T Consensus       534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~  613 (694)
T 3dm0_A          534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN  613 (694)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSS
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence            88888999999999999998887764 567999999999988765 5689999999999988877766666667778774


Q ss_pred             CCCEEEEecCCCeEEEEEcCcceee
Q 024676          239 LGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                       +.+++++ .|+.|++||+.+++.+
T Consensus       614 -~~~l~~~-~~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          614 -RYWLCAA-TEHGIKIWDLESKSIV  636 (694)
T ss_dssp             -SSEEEEE-ETTEEEEEETTTTEEE
T ss_pred             -CcEEEEE-cCCCEEEEECCCCCCh
Confidence             6666655 4667999999988754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-36  Score=250.20  Aligned_cols=244  Identities=21%  Similarity=0.392  Sum_probs=204.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|..+|.+++|+|   ++++|++|+.|+.+++||..+++.+..+.+|.+.|.+++|+|++.++++|+.|++|++||
T Consensus        59 ~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           59 KTISGHKLGISDVAWSS---DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             hhhccCCCceEEEEEcC---CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            44578999999999996   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      +.+++....+. |..+|..++|+|+++++++++.|+.|++||+++++........+...+..++|.|++. ++++++.|+
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~  214 (312)
T 4ery_A          136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDN  214 (312)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTT
T ss_pred             CCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCC
Confidence            99998777764 7789999999999999999999999999999876644344445566788899988765 455677789


Q ss_pred             eEEEEECCCCceeEEecCCC-C---EEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCE
Q 024676          169 GVRLWDARSGKIVQTLETKS-P---VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNI  242 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~~~-~---v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (264)
                      .|++||+++++++..+..+. .   +......+++.++++ +.|+.|++||+++.+.+..+..+.. .....++| .+.+
T Consensus       215 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~  293 (312)
T 4ery_A          215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENI  293 (312)
T ss_dssp             EEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSE
T ss_pred             eEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCc
Confidence            99999999999888775432 1   233334467777766 4589999999999999888876544 44567777 4788


Q ss_pred             EEEec--CCCeEEEEEcC
Q 024676          243 FIAGG--EDMWVHVFDFH  258 (264)
Q Consensus       243 ~~~gs--~d~~v~vwd~~  258 (264)
                      +++++  .|+.|++|+.+
T Consensus       294 l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          294 IASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEECTTTCCEEEEECC
T ss_pred             eEEEEccCCccEEEecCC
Confidence            88886  69999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=273.03  Aligned_cols=245  Identities=18%  Similarity=0.277  Sum_probs=200.7

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-----------eEEeeeCCc------------CCEEEEEEC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----------WIGTFEGHK------------GAVWSCCLD   70 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-----------~~~~~~~H~------------~~V~~v~~~   70 (264)
                      .|.++|.+|+|+|   +|++||+|+.|+.|++|+..+++           ....+.+|.            +.|.+++|+
T Consensus        26 ~~~~~V~~v~~s~---~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           26 AEADIISTVEFNH---SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             CGGGSEEEEEECS---SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             cccCcEEEEEECC---CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            3688999999996   89999999999999999998776           577899998            889999999


Q ss_pred             CCC--cEEEEecCCCeEEEEeCCCCcEE---------------------------------------EE--eecCCeEEE
Q 024676           71 ANA--LFSASGSADFTAKLWDALTGDEK---------------------------------------HS--FEHKHIVRA  107 (264)
Q Consensus        71 ~~~--~~l~s~s~D~~v~iwd~~~~~~~---------------------------------------~~--~~~~~~v~~  107 (264)
                      |++  .++++++.|++|++||+.++...                                       ..  ..|...|.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            998  78999999999999998764321                                       12  247888999


Q ss_pred             EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-------EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce
Q 024676          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (264)
Q Consensus       108 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~  180 (264)
                      ++|+|++++|++| .|+.|++||++.......       ....|...+.+++|+|++..++++++.|+.|++||+++++.
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            9999999999998 799999999974322111       13457788999999988756788888999999999999886


Q ss_pred             ----eEEecCCC-------------CEEEEEEcCCCcEEEEeCCCcEEEEECCC-ceeeeEEecCCCCc-----------
Q 024676          181 ----VQTLETKS-------------PVTSAEVSRDGRYITTADGSSVKFWDANH-FGLVKGYNMPCNTE-----------  231 (264)
Q Consensus       181 ----~~~~~~~~-------------~v~~~~~s~~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~-----------  231 (264)
                          +..+..+.             ++.+++|+|++++|+++.++.|++||+++ ++++..+..+....           
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccc
Confidence                56666543             89999999999988776559999999997 77777777654322           


Q ss_pred             -----eeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          232 -----SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       232 -----~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                           .+++.| ++.+|++|+.|+.|++||+.+++.+
T Consensus       342 i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          342 IFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             GGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             cccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcce
Confidence                 267777 4889999999999999999988753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-36  Score=251.96  Aligned_cols=253  Identities=23%  Similarity=0.430  Sum_probs=218.4

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      ..++..+.+|..+|.+|+|+|   +|++|++|+.|+.|++|+..+++.+..+.+|.+.|.+++|+|++.++++++.|++|
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i   98 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI   98 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECT---TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             ccccEEEEEeeceEEEEEEcC---CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            345677899999999999996   89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC-----CcEEEeeCCCCCCC----------CeEeccCCC--Ce
Q 024676           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP----------PREVGNSSG--SI  148 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~----------~~~~~~~~~--~i  148 (264)
                      ++||+.+++.+..+.+..++..++|+|+++++++++.+     +.+++||++.....          ......+.+  .+
T Consensus        99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B           99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            99999999999999999999999999999999999998     99999998765432          122223333  78


Q ss_pred             EEEEEecCCCeEEEEeeCCCeEEEEECCC-CceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEe
Q 024676          149 RTVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~  225 (264)
                      .+++|.+++. ++++++.|+.|++||+++ ++.+..+. +..++.+++|+|++.+|++ +.++.|++||+++++.+..+.
T Consensus       179 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          179 TVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            9999988665 556677889999999998 67776665 4567999999999987765 568999999999999998888


Q ss_pred             cCCCCceeeEcCCCCCEEEEecCCC--------------eEEEEEcCcceee
Q 024676          226 MPCNTESASLEPKLGNIFIAGGEDM--------------WVHVFDFHTGEQI  263 (264)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~--------------~v~vwd~~~g~~i  263 (264)
                      .......+.+.+ .+.++++++.++              .+++||..+++.+
T Consensus       258 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  308 (369)
T 3zwl_B          258 TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI  308 (369)
T ss_dssp             CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred             CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence            777777778887 488999999888              8999999888764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.6e-37  Score=260.75  Aligned_cols=255  Identities=16%  Similarity=0.146  Sum_probs=212.3

Q ss_pred             CCcceeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc------eEEeeeCCcCCEEEEEECCC--
Q 024676            1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WIGTFEGHKGAVWSCCLDAN--   72 (264)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~------~~~~~~~H~~~V~~v~~~~~--   72 (264)
                      |-+..+....++.+|.++|.+|+|+|     ++|++|+.|+.|++|+..+++      .+..+.+|...|.+++|+++  
T Consensus         1 m~~~~~~~~~~~~~h~~~i~~~~~~~-----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   75 (397)
T 1sq9_A            1 MSKVFIATANAGKAHDADIFSVSACN-----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE   75 (397)
T ss_dssp             --CEEEEEEEESSCSSSCEEEEEECS-----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE
T ss_pred             CchhhhhhhhhhhhhhcCeEEEEecC-----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc
Confidence            45555666677789999999999986     589999999999999999887      78889999999999999999  


Q ss_pred             --C---cEEEEecCCCeEEEEeCCCCcE-----EEEee-c-----CCeEEEEEEC----CCCCE-EEEeeCCCcEEEeeC
Q 024676           73 --A---LFSASGSADFTAKLWDALTGDE-----KHSFE-H-----KHIVRACAFS----EDTHL-LLTGGFEKILRIFDL  131 (264)
Q Consensus        73 --~---~~l~s~s~D~~v~iwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-l~s~~~d~~i~~~d~  131 (264)
                        +   .++++++.|+.|++||+.++..     ...+. |     ...|.+++|+    |++++ |++++.|+.|++||+
T Consensus        76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  155 (397)
T 1sq9_A           76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  155 (397)
T ss_dssp             TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence              9   9999999999999999988774     55554 5     4889999999    99999 999999999999999


Q ss_pred             CC------CCCCC-----eEe------ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-------C
Q 024676          132 NR------PDAPP-----REV------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------K  187 (264)
Q Consensus       132 ~~------~~~~~-----~~~------~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-------~  187 (264)
                      +.      ++...     ...      ..+...+.+++|+|++  ++++++.|+.|++||+++++.+..+..       .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~  233 (397)
T 1sq9_A          156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  233 (397)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence            87      44433     222      3467789999999876  777888889999999999998888875       6


Q ss_pred             CCEEEEEEcCCCcEEEEe-CC---CcEEEEECCCceeeeEEec-------------CC-CCceeeEcCCCCCEEEEecCC
Q 024676          188 SPVTSAEVSRDGRYITTA-DG---SSVKFWDANHFGLVKGYNM-------------PC-NTESASLEPKLGNIFIAGGED  249 (264)
Q Consensus       188 ~~v~~~~~s~~~~~l~~~-~~---~~i~iwd~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~gs~d  249 (264)
                      .++.+++|+|++.+|+++ .+   +.|++||+++++.+..+..             +. ....+.+.+ ++.+|++++.|
T Consensus       234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  312 (397)
T 1sq9_A          234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWD  312 (397)
T ss_dssp             CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETT
T ss_pred             CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCC
Confidence            789999999999887654 56   8999999999988888865             33 345667777 58999999999


Q ss_pred             CeEEEEEcCcceee
Q 024676          250 MWVHVFDFHTGEQI  263 (264)
Q Consensus       250 ~~v~vwd~~~g~~i  263 (264)
                      +.|++||+.+++.+
T Consensus       313 g~i~iwd~~~~~~~  326 (397)
T 1sq9_A          313 GKLRFWDVKTKERI  326 (397)
T ss_dssp             SEEEEEETTTTEEE
T ss_pred             CeEEEEEcCCCcee
Confidence            99999999988764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.7e-37  Score=274.27  Aligned_cols=243  Identities=13%  Similarity=0.143  Sum_probs=204.0

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      ..+.+.+.+++|+|   ||++|++++ ++.+++|++.+++....|.+|.+.|.+++|+|++.+++||+.|++|+|||+.+
T Consensus        15 ~~~~g~~~~~~~sp---dg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~   90 (611)
T 1nr0_A           15 RTARGTAVVLGNTP---AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   90 (611)
T ss_dssp             CCCTTCCCCCEECT---TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CcccCceeEEeeCC---CCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCC
Confidence            46777888999996   999999998 56999999998888899999999999999999999999999999999999875


Q ss_pred             Cc--EEEEe-ecCCeEEEEEECCCCCEEEEeeCC----CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           93 GD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        93 ~~--~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      +.  ....+ .|..+|..++|+|++++|++++.+    +.+++||...  . ...+..|...+.+++|+|++...+++++
T Consensus        91 ~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~--~-~~~l~gh~~~v~~v~f~p~~~~~l~s~s  167 (611)
T 1nr0_A           91 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT--S-NGNLTGQARAMNSVDFKPSRPFRIISGS  167 (611)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC--B-CBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred             CcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC--C-cceecCCCCCceEEEECCCCCeEEEEEe
Confidence            43  33344 478899999999999999998875    3688888532  2 2344568889999999998877788999


Q ss_pred             CCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEe-------cC-CCCceeeE
Q 024676          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN-------MP-CNTESASL  235 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~-------~~-~~~~~~~~  235 (264)
                      .|++|++||.++++++..+.. ...|.+++|+|++++|++ +.|++|++||+++++.+..+.       .+ .....+.|
T Consensus       168 ~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~  247 (611)
T 1nr0_A          168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  247 (611)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence            999999999999988888864 457999999999988765 568999999999988887773       22 23456677


Q ss_pred             cCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          236 EPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       236 ~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .| ++++|++||.|++|++||+.+++.+
T Consensus       248 sp-dg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          248 SP-DGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CC-CCCEEEEEeCCCeEEEEeCCCCcee
Confidence            77 5899999999999999999988753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.2e-36  Score=248.94  Aligned_cols=249  Identities=18%  Similarity=0.220  Sum_probs=201.4

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCCEEEEEECC--CCcEEEEecCCCe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFT   84 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~V~~v~~~~--~~~~l~s~s~D~~   84 (264)
                      ++.||+++|.+|+|+|   ++++|++|+.|+.|++|+..++    +.+..+.+|.+.|.+++|+|  ++.++++|+.|++
T Consensus         6 ~~~gH~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             EECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cCcccccceeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            4579999999999996   8999999999999999999876    35677889999999999999  6899999999999


Q ss_pred             EEEEeCCCCc---------EEEEe-ecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCCCeEe-----------
Q 024676           85 AKLWDALTGD---------EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREV-----------  141 (264)
Q Consensus        85 v~iwd~~~~~---------~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~-----------  141 (264)
                      |++||+.++.         ....+ .|..+|..++|+|+  ++++++++.|+.+++||+++++......           
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            9999998763         34444 47889999999999  9999999999999999998766433221           


Q ss_pred             -ccCCCCeEEEEEecC--CCeEEEEeeCCCeEEEEECCCCce--eEEec-CCCCEEEEEEcCCC----cEEE-EeCCCcE
Q 024676          142 -GNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARSGKI--VQTLE-TKSPVTSAEVSRDG----RYIT-TADGSSV  210 (264)
Q Consensus       142 -~~~~~~i~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~~----~~l~-~~~~~~i  210 (264)
                       ..+...+.+++|.|.  +..++++++.++.+.+|+...++.  +..+. +..+|.+++|+|++    ++++ ++.|+.|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence             145667899999986  355677778889998888887765  44454 45679999999998    5655 4668999


Q ss_pred             EEEECCCc----------------------------------------------eeeeEEecCC-CCceeeEcCCCCCEE
Q 024676          211 KFWDANHF----------------------------------------------GLVKGYNMPC-NTESASLEPKLGNIF  243 (264)
Q Consensus       211 ~iwd~~~~----------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~  243 (264)
                      ++||++..                                              +.+..+..+. ....+.+.+ .+.+|
T Consensus       243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l  321 (351)
T 3f3f_A          243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTIL  321 (351)
T ss_dssp             EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCE
T ss_pred             EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEE
Confidence            99999764                                              4445554433 345667777 58899


Q ss_pred             EEecCCCeEEEEEcCcceee
Q 024676          244 IAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++|+.|+.|++||+.+++++
T Consensus       322 ~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCE
T ss_pred             EEecCCCcEEEEecCcCcch
Confidence            99999999999999987653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-37  Score=257.87  Aligned_cols=248  Identities=18%  Similarity=0.250  Sum_probs=201.4

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC--CCceEEeeeCCcCCEEEEEECCC--CcEEEEecCCCe
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFT   84 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~--~~~~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~   84 (264)
                      ..++.+|.++|.+++|+|   ++++|++|+.|+.|++|+..  +++.+..+.+|.+.|.+++|+++  +.++++|+.|+.
T Consensus         4 ~~~~~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             -CCEEECCCCEEEEEECS---SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cEEecCCcccEEEEEEcC---CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            345689999999999996   89999999999999999997  45677889999999999999987  899999999999


Q ss_pred             EEEEeCCCCc--EEEEe-ecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCCCC-eEeccCCCCeEEEEEecC--
Q 024676           85 AKLWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHS--  156 (264)
Q Consensus        85 v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~--  156 (264)
                      |++||+.++.  ....+ .|...|.+++|+|+  ++++++++.|+.|++||++...... .....+...+.+++|.|.  
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999999886  44444 37889999999999  9999999999999999998764433 344567889999999985  


Q ss_pred             ----------CCeEEEEeeCCCeEEEEECCCCce----eEEec-CCCCEEEEEEcCC---CcEEEE-eCCCcEEEEECCC
Q 024676          157 ----------DQTILSSCTDSGGVRLWDARSGKI----VQTLE-TKSPVTSAEVSRD---GRYITT-ADGSSVKFWDANH  217 (264)
Q Consensus       157 ----------~~~~~~~~~~d~~v~iwd~~~~~~----~~~~~-~~~~v~~~~~s~~---~~~l~~-~~~~~i~iwd~~~  217 (264)
                                ++.++++++.|+.|++||+++++.    ...+. +..++.+++|+|+   +.++++ +.|+.|++||+++
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                      456777888889999999987653    23443 4567999999999   777665 5689999999987


Q ss_pred             cee---eeEEe---cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          218 FGL---VKGYN---MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       218 ~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      .+.   ...+.   .......+.+.| ++.+|++++.|+.|++|++.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          241 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             TTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred             CCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence            631   11121   223345667777 4889999999999999998743

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-36  Score=256.66  Aligned_cols=248  Identities=13%  Similarity=0.139  Sum_probs=200.6

Q ss_pred             cceEeeccCCCeeeeEeccCCCCC-eEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECC-CCcEEEEecCCC
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDA-NALFSASGSADF   83 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g-~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~-~~~~l~s~s~D~   83 (264)
                      ....+.+|..+|.+++|+|   ++ ++|++|+.|+.|++|+..+++....+.  +|.+.|.+++|+| ++.++++++.|+
T Consensus        65 ~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHP---THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EEEEECCCSSCEEEEEECS---SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             eEEeccCCCCCEEEEEECC---CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            3445679999999999997   77 899999999999999999888766665  7999999999999 678999999999


Q ss_pred             eEEEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           84 TAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      +|++||+.+........   +...|.+++|+|+++++++++.|+.|++||++ ++ ....+..|.+.+.+++|+|++..+
T Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCE
Confidence            99999998644333322   34679999999999999999999999999994 33 234455678899999999988768


Q ss_pred             EEEeeCCCeEEEEECCC----CceeEEecCCCCEEEEEEcC-CCcEEEE-eCCCcEEEEECCCceeeeEEecCC------
Q 024676          161 LSSCTDSGGVRLWDARS----GKIVQTLETKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHFGLVKGYNMPC------  228 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~------  228 (264)
                      +++++.|+.|++||+++    ++++..+.+..++.+++|+| ++.++++ +.|+.|++||+++++....+..+.      
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            88889999999999998    66777777778999999999 9987765 568999999999887765554221      


Q ss_pred             -CCce-----------eeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          229 -NTES-----------ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       229 -~~~~-----------~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                       ....           +.+.+ ++.+  +|+.|+.|++||+.+++.+
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~  343 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLV  343 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEE
T ss_pred             ccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCcee
Confidence             1112           22333 3444  7789999999999988764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-35  Score=252.39  Aligned_cols=243  Identities=21%  Similarity=0.303  Sum_probs=206.2

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC-
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-   92 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~-   92 (264)
                      .|..+|.+++|+|   ++++|++|+.|+.+++|+..+++.+..+.+|.+.|.+++|  ++.++++|+.|+.|++||+.. 
T Consensus       132 ~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~  206 (401)
T 4aez_A          132 DESTYVASVKWSH---DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA  206 (401)
T ss_dssp             CTTCCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             CCCCCEEEEEECC---CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC
Confidence            4899999999996   8999999999999999999999999999999999999999  457999999999999999984 


Q ss_pred             CcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee--CCCe
Q 024676           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGG  169 (264)
Q Consensus        93 ~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~d~~  169 (264)
                      ......+ .|...|.+++|+|+++++++++.|+.|++||+++++.. .....+...+.+++|+|.+..++++++  .|+.
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          207 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK-FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE-EEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc-EEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence            4444444 48889999999999999999999999999999875432 344567889999999998888888866  6899


Q ss_pred             EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE--e-CCCcEEEEECCCceeeeEEe--cC-CCCceeeEcCCCCCEE
Q 024676          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT--A-DGSSVKFWDANHFGLVKGYN--MP-CNTESASLEPKLGNIF  243 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~-~~~~i~iwd~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~  243 (264)
                      |++||+++++.+..+....++.+++|+|+++++++  + .++.|++||+++.+....+.  .+ .....+.+.+ ++.+|
T Consensus       286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l  364 (401)
T 4aez_A          286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRIL  364 (401)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEE
Confidence            99999999999998888889999999999988765  3 47999999999876555443  32 3455677777 58999


Q ss_pred             EEecCCCeEEEEEcCcceee
Q 024676          244 IAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++++.|+.|++||+.+++.+
T Consensus       365 ~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          365 STAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EEECTTSEEEEEECCC----
T ss_pred             EEEeCCCcEEEEECCCCccc
Confidence            99999999999999988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.9e-36  Score=276.91  Aligned_cols=254  Identities=19%  Similarity=0.234  Sum_probs=220.7

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      +.....+.+|++.|.+++|+|   +|++|++|+.|+.|++|+..+++.+..+.+|.++|.+++|+|++.++++|+.|+.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp---~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHP---TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             cccceeeecCCCceEEEEECC---CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            345567789999999999996   89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ++||+.+++....+. |...|.+++|+|++++|++++.|+.+++||++++.........+...+.+++|+|.++..++++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            999999998887776 8889999999999999999999999999999876444455566788999999998666678888


Q ss_pred             eCCCeEEEEECCCCceeEEecC--CCCEEEEEEcC--CCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCC
Q 024676          165 TDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSR--DGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPK  238 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~--~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~  238 (264)
                      +.|+.|++||+++++....+..  ..++..++++|  ++.++++ +.++.|++||+++++.+..+..+.. ...+.++| 
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-  238 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-  238 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-
Confidence            8899999999998887666643  26799999999  8877765 4578999999999998888876543 44667777 


Q ss_pred             CCCEEEEecCCCeEEEEEcCcceee
Q 024676          239 LGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+.++++++.|+.|++||+.+++.+
T Consensus       239 ~~~~l~~~~~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          239 TLPIIISGSEDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            5889999999999999999887653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.2e-35  Score=244.43  Aligned_cols=249  Identities=16%  Similarity=0.187  Sum_probs=206.2

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce---EEeee--CCcCCEEEEEECCCCcEEEEecCC
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---IGTFE--GHKGAVWSCCLDANALFSASGSAD   82 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~---~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D   82 (264)
                      .+....+|..+|.+++|+|   ++++|++++ |+.+++|+..+++.   +..+.  +|...|.+++|+|++.++++++.|
T Consensus        43 ~~~~~~~h~~~v~~~~~~~---~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  118 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEEEEECCSSCCCEEEECS---SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             ccceeccCCCceEEEEEec---CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC
Confidence            3444568999999999996   899999999 99999999987753   33333  799999999999999999999999


Q ss_pred             CeEEEEeCCCCc--EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           83 FTAKLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        83 ~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      +.|++||+.++.  ....+ .|...+..++|+|+++++++++.|+.+++||+++++. ......+...+.+++|+|++. 
T Consensus       119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-  196 (337)
T 1gxr_A          119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGT-  196 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-
T ss_pred             CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEEECCCCC-
Confidence            999999999876  33333 3777899999999999999999999999999987643 234455788999999998665 


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCC
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPK  238 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (264)
                      ++++++.|+.|++||+++++.+..+....++.+++++|+++++++ +.++.|++||+++.+.............+.+.+ 
T Consensus       197 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-  275 (337)
T 1gxr_A          197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-  275 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-
T ss_pred             EEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC-
Confidence            566677889999999999999888888889999999999988765 557899999999887654333344455677777 


Q ss_pred             CCCEEEEecCCCeEEEEEcCcceee
Q 024676          239 LGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++++|++++.|+.|++||+.+++.+
T Consensus       276 ~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          276 CGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEecCCCcEEEEECCCCeEE
Confidence            5889999999999999999988754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.2e-35  Score=251.57  Aligned_cols=246  Identities=15%  Similarity=0.252  Sum_probs=210.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+++|...|.+|+|+|   +|++|++|+.|+.|++|+.++++.+..+.+|...|.+++++  +.++++|+.|+.+++||
T Consensus       141 ~~~~~~~~~V~sv~fsp---dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d  215 (420)
T 4gga_A          141 LQMEQPGEYISSVAWIK---EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHD  215 (420)
T ss_dssp             EECCSTTCCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             EEecCCCCcEEEEEECC---CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEee
Confidence            34468899999999996   99999999999999999999999999999999999988775  67899999999999999


Q ss_pred             CCCCc-EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC---CeEeccCCCCeEEEEEecCCCeEEEE-
Q 024676           90 ALTGD-EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSS-  163 (264)
Q Consensus        90 ~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~-  163 (264)
                      ..... ....+ .|...+..+.++|+++++++++.|+.+++|+...++..   ......+.+.+.+++|+|.+..++++ 
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred             ecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence            87754 33443 48889999999999999999999999999999766432   34455678899999999988877765 


Q ss_pred             -eeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe---CCCcEEEEECCCceeeeEEecCCC-CceeeEcCC
Q 024676          164 -CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPK  238 (264)
Q Consensus       164 -~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~  238 (264)
                       ++.|++|++||+++++++..+..+..+.++.++|++..++++   .++.|++||+++++++..+..+.. +..++++| 
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-  374 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-  374 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-
T ss_pred             eecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-
Confidence             457899999999999999999888899999999999776543   478999999999999999876554 45667777 


Q ss_pred             CCCEEEEecCCCeEEEEEcCcce
Q 024676          239 LGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ++.+|++||.|++|++||+.+.+
T Consensus       375 dg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          375 DGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             TSSCEEEEETTTEEEEECCSCSS
T ss_pred             CCCEEEEEecCCeEEEEECCCCC
Confidence            58999999999999999986544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-37  Score=262.74  Aligned_cols=247  Identities=12%  Similarity=0.104  Sum_probs=193.8

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC--ceEEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~--~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      |+.|.+.+.|..+|.+++|+|   +|++|++|+.|+.|++|+..++  +.+..+.+|.+.|.+++|+|++.++++++.|+
T Consensus         1 m~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~   77 (377)
T 3dwl_C            1 MATSQVLHILPKPSYEHAFNS---QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR   77 (377)
T ss_dssp             -CCEEEEEECSSCCSCCEECS---SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS
T ss_pred             CCcceeEecCCCcEEEEEECC---CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC
Confidence            356777778899999999996   8999999999999999999988  67788999999999999999999999999999


Q ss_pred             eEEEEeCCCCc---EEE-EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC--CCeEecc-CCCCeEEEEEecC
Q 024676           84 TAKLWDALTGD---EKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGN-SSGSIRTVAWLHS  156 (264)
Q Consensus        84 ~v~iwd~~~~~---~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~-~~~~i~~~~~~~~  156 (264)
                      +|++||+.++.   ... ...|...|.+++|+|++++|++++.|+.|++||++.++.  ....+.. |...+.+++|+|+
T Consensus        78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            99999998876   333 345888999999999999999999999999999987653  2344444 8889999999986


Q ss_pred             CCeEEEEeeCCCeEEEEECC------------------CCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCC
Q 024676          157 DQTILSSCTDSGGVRLWDAR------------------SGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH  217 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~  217 (264)
                      +. ++++++.|+.|++||++                  +++++..+.+..++.+++|+|++++|++ +.|+.|++||+++
T Consensus       158 ~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          158 NV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             SS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             CC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            54 66777888999999985                  3445555555677999999999987655 5689999999998


Q ss_pred             cee----eeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          218 FGL----VKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       218 ~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ++.    +..+..+.. ...+.+.+ ++++|++|+.|+.+ +|+..
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          237 PEQPPRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TTSCEEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCC
T ss_pred             CCCcceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeC
Confidence            876    666665543 45667777 48899999877766 66544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.4e-37  Score=263.01  Aligned_cols=248  Identities=18%  Similarity=0.180  Sum_probs=194.0

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKL   87 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~i   87 (264)
                      ...+|...|++|+|+|.  ++++||+|+.||.|++||+.+++.  ...+.+|.+.|.+++|+| ++.+|+|||.|++|++
T Consensus       114 ~~~~~~~~V~~l~~~P~--~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPT--HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             EEEECSSCEEEEEECSS--CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cCCCCCCCEEEEEEeCC--CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            44689999999999983  557899999999999999987753  455678999999999997 6889999999999999


Q ss_pred             EeCCCCcEEEEeec---CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           88 WDALTGDEKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        88 wd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ||+.++.......+   ...+.+++|+|++++|++|+.|+.|++||++...  ...+..|...|.+++|+|.+..+++++
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~--~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE--LWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB--CCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce--eEEEecccceEEeeeecCCCceEEEEe
Confidence            99987654433332   2357789999999999999999999999997533  233446788999999999888899999


Q ss_pred             eCCCeEEEEECCCCceeEEe----cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC-------CCce
Q 024676          165 TDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-------NTES  232 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~-------~~~~  232 (264)
                      +.|+.|+|||+++.+....+    .+..+|.+++|+|+|.+|++ +.|+.|++||+++++....+..+.       ....
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  349 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK  349 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence            99999999999987644322    35578999999999988765 568999999999887765553321       1223


Q ss_pred             eeEcCCCCCEEEEe------------cCCCeEEEEEcCcceee
Q 024676          233 ASLEPKLGNIFIAG------------GEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       233 ~~~~~~~~~~~~~g------------s~d~~v~vwd~~~g~~i  263 (264)
                      ..+.++ +.+++++            ..++.|++||..+|+.+
T Consensus       350 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~  391 (435)
T 4e54_B          350 AAWHPR-YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM  391 (435)
T ss_dssp             CEECSS-SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred             EEEcCC-CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence            344443 3344443            34568999999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=258.92  Aligned_cols=251  Identities=17%  Similarity=0.258  Sum_probs=208.2

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC----CceEEeeeCCcCCEEEEEECCC-CcEEEEecCCC
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADF   83 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~----~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~   83 (264)
                      +....+|..+|.+++|+|   ++++|++|+.|+.+++|+..+    .+.+..+.+|.+.|.+++|+|+ +.++++++.|+
T Consensus        60 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  136 (416)
T 2pm9_A           60 PIASLQVDSKFNDLDWSH---NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG  136 (416)
T ss_dssp             CSCCCCCSSCEEEEEECS---SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSS
T ss_pred             EEEEEecCCceEEEEECC---CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCC
Confidence            333457999999999986   899999999999999999987    3578889999999999999998 89999999999


Q ss_pred             eEEEEeCCCCc------EEEE----eecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCCeEeccC-----CCC
Q 024676           84 TAKLWDALTGD------EKHS----FEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNS-----SGS  147 (264)
Q Consensus        84 ~v~iwd~~~~~------~~~~----~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~  147 (264)
                      +|++||+.++.      ....    ..|...|.+++|+|+ +.++++++.|+.|++||+++++.........     ...
T Consensus       137 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (416)
T 2pm9_A          137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ  216 (416)
T ss_dssp             CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCC
T ss_pred             eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCc
Confidence            99999998876      3222    247788999999998 7899999999999999998765432222221     678


Q ss_pred             eEEEEEecCCCeEEEEeeCCC---eEEEEECCCC-ceeEEec--CCCCEEEEEEcC-CCcEEEE-eCCCcEEEEECCCce
Q 024676          148 IRTVAWLHSDQTILSSCTDSG---GVRLWDARSG-KIVQTLE--TKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHFG  219 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d~---~v~iwd~~~~-~~~~~~~--~~~~v~~~~~s~-~~~~l~~-~~~~~i~iwd~~~~~  219 (264)
                      +.+++|+|++..++++++.|+   .|++||++++ +++..+.  +...+.+++|+| ++.++++ +.|+.|++||+++++
T Consensus       217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~  296 (416)
T 2pm9_A          217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE  296 (416)
T ss_dssp             EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred             eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence            999999998877888888888   9999999986 5555565  557899999999 7876654 568999999999999


Q ss_pred             eeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          220 LVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       220 ~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .+..+..+. ....+.+.|+.+.+|++++.|+.|++||+.+++.
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            988887644 4567788886448999999999999999987653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.1e-35  Score=246.72  Aligned_cols=251  Identities=18%  Similarity=0.230  Sum_probs=203.2

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-------------CCcCCEEEEEECC-CCc
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-------------GHKGAVWSCCLDA-NAL   74 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-------------~H~~~V~~v~~~~-~~~   74 (264)
                      ..++.+|.++|.+|+|+|  .++++|++|+.|+.|++|+..+++....+.             +|.+.|.+++|+| ++.
T Consensus        36 ~~~~~~h~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEP--VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             EEECCCCSSCEEEEEECT--TTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             eeeeeccCCcEEEEEEec--CCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            345678999999999995  278899999999999999999886544442             6999999999999 778


Q ss_pred             EEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCC---CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE
Q 024676           75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT---HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~  151 (264)
                      ++++++.|+.|++||+.+++....+.+...+..+.++|.+   .++++++.|+.+++||+++++.. ..+..+.+.+.++
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~v~~~  192 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAV  192 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC-EEECCCCSCEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee-eeecCCCCcEEEE
Confidence            9999999999999999999998999899999999999854   49999999999999999877543 4555678899999


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCCCc-eeEEe----------------cCCCCEEEEEEcCCCcEEEE-eCCCcEEEE
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTL----------------ETKSPVTSAEVSRDGRYITT-ADGSSVKFW  213 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~----------------~~~~~v~~~~~s~~~~~l~~-~~~~~i~iw  213 (264)
                      +|.|++..++++++.|+.|++||+++++ ++..+                .+..++.+++|+|+++++++ +.|+.|++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            9999888788888999999999998875 33433                23467999999999987665 568899999


Q ss_pred             ECCCcee-----------------------------------------------eeEEecCC-CCceeeEcCCCCCEEEE
Q 024676          214 DANHFGL-----------------------------------------------VKGYNMPC-NTESASLEPKLGNIFIA  245 (264)
Q Consensus       214 d~~~~~~-----------------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~  245 (264)
                      |+++++.                                               +..+..+. ....+.+.+ ++.+|++
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s  351 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYS  351 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEE
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEE
Confidence            9876432                                               22333222 234566776 4899999


Q ss_pred             ecCCCeEEEEEcCcceee
Q 024676          246 GGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       246 gs~d~~v~vwd~~~g~~i  263 (264)
                      |+.|+.|++||+.+++++
T Consensus       352 ~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          352 GSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             EETTSCEEEEEECC----
T ss_pred             ECCCCeEEEEeCCCCCcc
Confidence            999999999999988764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-35  Score=248.86  Aligned_cols=244  Identities=12%  Similarity=0.140  Sum_probs=205.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      .++..|.++|.+++|+|   +|++|++|+.|+.+++|+..+++  .+..+.+|.+.|.+++|+|++.++++++.|+.|++
T Consensus         2 ~~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v   78 (372)
T 1k8k_C            2 AYHSFLVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV   78 (372)
T ss_dssp             CEEESCSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ceecccCCCeEEEEECC---CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence            35567999999999996   89999999999999999999887  78899999999999999999999999999999999


Q ss_pred             EeCCCCcEEEE---eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC---CCeEeccCCCCeEEEEEecCCCeEE
Q 024676           88 WDALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        88 wd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      ||+.+++....   ..|...|.+++|+|+++++++++.|+.+++||++....   .......+...+.+++|.|++. ++
T Consensus        79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  157 (372)
T 1k8k_C           79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LL  157 (372)
T ss_dssp             EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EE
T ss_pred             EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EE
Confidence            99988864444   34788999999999999999999999999999986653   1222245678999999998655 56


Q ss_pred             EEeeCCCeEEEEECC------------------CCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceee
Q 024676          162 SSCTDSGGVRLWDAR------------------SGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV  221 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~------------------~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~  221 (264)
                      ++++.|+.|++||++                  +++.+..+. +..++.+++|+|++.++++ +.|+.|++||+++++.+
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            677788999999954                  677777775 4567999999999987665 56899999999999988


Q ss_pred             eEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          222 KGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       222 ~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ..+..+. ....+.+.+ ++.++++| .|+.|++|++.+
T Consensus       238 ~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          238 ATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccC
Confidence            8887654 345667776 47777777 899999999877

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.5e-36  Score=250.81  Aligned_cols=252  Identities=15%  Similarity=0.138  Sum_probs=202.9

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      ....+.+|..+|.+++|+|   ++++|++++.|+.+++|+..+++....  +.+|...|.+++|+|++.++++++.|+.|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v  120 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAP---DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI  120 (372)
T ss_dssp             EEEEEECCSSCEEEEEEET---TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSE
T ss_pred             eeeeecCCCCcccEEEEeC---CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEE
Confidence            4556679999999999996   889999999999999999988875444  46799999999999999999999999999


Q ss_pred             EEEeCCCCcE---EEEe--ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC-----------------CCCCeEecc
Q 024676           86 KLWDALTGDE---KHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-----------------DAPPREVGN  143 (264)
Q Consensus        86 ~iwd~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~-----------------~~~~~~~~~  143 (264)
                      ++||+..+..   ...+  .|...|.+++|+|+++++++++.|+.+++||++..                 ......+..
T Consensus       121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (372)
T 1k8k_C          121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  200 (372)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC
Confidence            9999988762   2222  36788999999999999999999999999996421                 112233345


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCC--ce-
Q 024676          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANH--FG-  219 (264)
Q Consensus       144 ~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~--~~-  219 (264)
                      +.+.+.+++|+|++. ++++++.|+.|++||+++++++..+..+ .++.+++|+|++++++++.++.|++||++.  +. 
T Consensus       201 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~  279 (372)
T 1k8k_C          201 SCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL  279 (372)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEE
T ss_pred             CCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceE
Confidence            778899999998665 5667778899999999999988887654 579999999999999988999999999977  32 


Q ss_pred             -ee------------------------------------eEEe-cCC-CCceeeEcCCCC---CEEEEecCCCeEEEEEc
Q 024676          220 -LV------------------------------------KGYN-MPC-NTESASLEPKLG---NIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       220 -~~------------------------------------~~~~-~~~-~~~~~~~~~~~~---~~~~~gs~d~~v~vwd~  257 (264)
                       .+                                    ..+. .+. ....+.+.++++   .+|++||.|+.|++||+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence             11                                    1111 222 233455666666   99999999999999999


Q ss_pred             Ccceee
Q 024676          258 HTGEQI  263 (264)
Q Consensus       258 ~~g~~i  263 (264)
                      .+++++
T Consensus       360 ~~~~~~  365 (372)
T 1k8k_C          360 RSLESA  365 (372)
T ss_dssp             HHHHHH
T ss_pred             cChhHh
Confidence            887653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=246.47  Aligned_cols=247  Identities=18%  Similarity=0.257  Sum_probs=196.6

Q ss_pred             EeeccCCCeeeeEeccCCCCC-eEEEEEeC---CCCcEEEeCCCCceEEee-eCCcCCEEEEEECCC---CcEEEEecCC
Q 024676           11 VCHGHSRPVVDLFYSPITPDG-FFLVSASK---DSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDAN---ALFSASGSAD   82 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g-~~l~t~s~---d~~v~i~~~~~~~~~~~~-~~H~~~V~~v~~~~~---~~~l~s~s~D   82 (264)
                      +..+|..+|.+|+|+|   ++ .++++|+.   |+.+++|+..+++..... .+|.++|.+++|+|+   +.++++|+.|
T Consensus        13 ~~~~h~~~v~~~~~~p---~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVP---CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEECSSCEEEEEECT---TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hccCCCCceEEEEEcC---CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            3468999999999997   66 56667776   999999999998865443 379999999999998   6999999999


Q ss_pred             CeEEEEeCCCCc-EEEEe-ecCCeEEEEE------ECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC----CeEE
Q 024676           83 FTAKLWDALTGD-EKHSF-EHKHIVRACA------FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----SIRT  150 (264)
Q Consensus        83 ~~v~iwd~~~~~-~~~~~-~~~~~v~~~~------~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~----~i~~  150 (264)
                      +.|++||+.++. ....+ .|...|.++.      |+|++++|++++.|+.+++||++.++........+.+    .+.+
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence            999999999886 55555 4888999995      4788999999999999999999887644454433333    7888


Q ss_pred             EEEe---cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcC---CCcEEE-EeCCCcEEEEECCCceeeeE
Q 024676          151 VAWL---HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR---DGRYIT-TADGSSVKFWDANHFGLVKG  223 (264)
Q Consensus       151 ~~~~---~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~-~~~~~~i~iwd~~~~~~~~~  223 (264)
                      +++.   ++++.++++++.|+.|++||+++++......+..++.+++|+|   ++.+++ ++.++.|++||+++.+.+..
T Consensus       170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            8842   2455677778888999999999999877777778999999999   777665 45689999999988776655


Q ss_pred             Ee-----cC-CCCceeeEcCCCCC-EEEEecCCCeEEEEEcCcce
Q 024676          224 YN-----MP-CNTESASLEPKLGN-IFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       224 ~~-----~~-~~~~~~~~~~~~~~-~~~~gs~d~~v~vwd~~~g~  261 (264)
                      +.     .+ .....+.+.|+ +. +|++|+.|+.|++||+.+++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQ-NRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-EEEEEEEEETTSEEEEEEEECCS
T ss_pred             eeeeccCCCcCCEEEEEECCC-CCcEEEEEeCCCcEEEeecCCCc
Confidence            54     33 34456777775 55 89999999999999987653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-34  Score=238.66  Aligned_cols=237  Identities=15%  Similarity=0.198  Sum_probs=204.4

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      +|..+|.++.|+|   ++++|++++.|+.+++|+..+++  ....+.+|...|.+++|+|++.++++++.|+.|++||+.
T Consensus        95 ~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A           95 NRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             CTTSBEEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEEcC---CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            7999999999996   88999999999999999999887  567788999999999999999999999999999999999


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      +++....+. |...+..++|+|+++++++++.|+.+++||+++++....  ..+...+.+++|+|++. ++++++.++.|
T Consensus       172 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~v~~~~~s~~~~-~l~~~~~~~~i  248 (337)
T 1gxr_A          172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGE-WLAVGMESSNV  248 (337)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred             CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee--ecCCCceEEEEECCCCC-EEEEEcCCCcE
Confidence            998777775 788999999999999999999999999999987653322  24567899999988765 45566778999


Q ss_pred             EEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCC
Q 024676          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d  249 (264)
                      ++||+++++......+..++.+++|+|+++++++ +.++.|++||+++++.+...........+.+.+ ++.+|++++.|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d  327 (337)
T 1gxr_A          249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKYIVTGSGD  327 (337)
T ss_dssp             EEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETT
T ss_pred             EEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECC-CCCEEEEecCC
Confidence            9999999887665566778999999999987765 568999999999998876666566666777887 48899999999


Q ss_pred             CeEEEEEc
Q 024676          250 MWVHVFDF  257 (264)
Q Consensus       250 ~~v~vwd~  257 (264)
                      +.|++||+
T Consensus       328 g~i~iw~~  335 (337)
T 1gxr_A          328 KKATVYEV  335 (337)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7e-36  Score=250.11  Aligned_cols=241  Identities=15%  Similarity=0.179  Sum_probs=197.7

Q ss_pred             cCCCeeeeEeccCC-CCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPIT-PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~-~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      |...|.+++|+|.. ++|++|++|+.|+.|++|+..+++.+..+.+|.+.|.+++|+| ++.++++|+.|++|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            77889999999843 2278999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CcEEEEe----ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC---------------------------eEe
Q 024676           93 GDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---------------------------REV  141 (264)
Q Consensus        93 ~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~---------------------------~~~  141 (264)
                      ++....+    .|...|.+++|+|++++|++++.|+.|++||+++++...                           ...
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            9888876    588899999999999999999999999999997643211                           011


Q ss_pred             ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--------------eEEec-CCCCEEEEEEcCC--CcEEEE
Q 024676          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--------------VQTLE-TKSPVTSAEVSRD--GRYITT  204 (264)
Q Consensus       142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--------------~~~~~-~~~~v~~~~~s~~--~~~l~~  204 (264)
                      ..+...+.+++|.  + .++++++.|+.|++||+++++.              +..+. +..++.+++++|+  +++|++
T Consensus       228 ~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          228 DIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             SSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred             cCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence            1267789999987  3 3677778889999999988654              44443 3456888999999  888876


Q ss_pred             e-CCCcEEEEECCCceee----eEEecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          205 A-DGSSVKFWDANHFGLV----KGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       205 ~-~~~~i~iwd~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      + .++.|++||+++++..    ..+..+   .....+.+.+ .+.+|++|+.|+.|++||+.+
T Consensus       305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred             EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEecC
Confidence            5 5799999999987543    355443   3455677777 589999999999999999853

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.8e-34  Score=248.90  Aligned_cols=243  Identities=19%  Similarity=0.328  Sum_probs=200.9

Q ss_pred             cceEeeccCCCe-eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676            8 VPLVCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus         8 ~~~~~~~h~~~v-~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      ....+.+|..+| .++.++     +++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|++++ ++++|+.|++|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~~-----~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFE-----DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             ceEEEcCCCCCcEEEEEEC-----CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            445678999885 566664     4699999999999999999999999999999999999999988 889999999999


Q ss_pred             EEeCCCCcEEEEee-cCCeEEEEEEC--CCCCEEEEeeCCCcEEEeeCCCCCCCC----------------------eEe
Q 024676           87 LWDALTGDEKHSFE-HKHIVRACAFS--EDTHLLLTGGFEKILRIFDLNRPDAPP----------------------REV  141 (264)
Q Consensus        87 iwd~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~s~~~d~~i~~~d~~~~~~~~----------------------~~~  141 (264)
                      +||+.+++....+. |..+|.+++++  ++++++++++.|+.+++||+++.....                      ...
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            99999998888876 88899999998  577899999999999999998765331                      123


Q ss_pred             ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCce
Q 024676          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG  219 (264)
Q Consensus       142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~  219 (264)
                      ..+...+.++.  ++ +.++++++.|+.|++||+++++++..+. +..++.+++++|++.++++ +.|+.|++||+++++
T Consensus       267 ~~~~~~v~~~~--~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          267 RGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             CCCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cCccceEEEEc--CC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            34556666653  33 4467777888999999999999988886 4567999999999987655 568999999999999


Q ss_pred             eeeEEecCCCCc-eeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          220 LVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ++..+..+.... .+.+.   +.++++|+.|+.|++||+.+++.
T Consensus       344 ~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~  384 (464)
T 3v7d_B          344 LMYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSR  384 (464)
T ss_dssp             EEEEECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCce
Confidence            998887655433 34443   68999999999999999987764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=255.11  Aligned_cols=244  Identities=14%  Similarity=0.162  Sum_probs=192.1

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC---Cc---eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GD---WIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~---~~---~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      .+|.++|.+|+|+|  .++++|++|+.|++|++|+..+   +.   ....+ +|.+.|.+++|+|++.++++|+.|++|+
T Consensus        60 ~~h~~~V~~~~~s~--~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSP--GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEEC--SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECC--CCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            68999999999995  2788999999999999999876   43   22233 4999999999999999999999999999


Q ss_pred             EEeCC---CCcEEEEee-------------cCCeEEEEE--ECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-CCCC
Q 024676           87 LWDAL---TGDEKHSFE-------------HKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGS  147 (264)
Q Consensus        87 iwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~  147 (264)
                      +||+.   ++.......             +...+.++.  ++++++++++++.|+.|++||+++++........ |.+.
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~  216 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA  216 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc
Confidence            99984   454433322             334455555  5678999999999999999999877654443332 6789


Q ss_pred             eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe--cCCCCEEEEEEc----CCCcEEEEe-CCCcEEEEECCCcee
Q 024676          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL--ETKSPVTSAEVS----RDGRYITTA-DGSSVKFWDANHFGL  220 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s----~~~~~l~~~-~~~~i~iwd~~~~~~  220 (264)
                      +.+++|+|++ .++++++.|+.|++||+++++++..+  .+..+|.+++++    |++.+++++ .|+.|++||++++++
T Consensus       217 v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          217 VSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             EEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             eEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            9999998764 56777788899999999999998877  445679999665    467677665 578999999999998


Q ss_pred             eeEEecCCC---------------------------CceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          221 VKGYNMPCN---------------------------TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       221 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      +..+..+..                           ...+++.  .+.+|++|+.|+.|++||+.+++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCccc
Confidence            888764321                           1223444  358999999999999999998874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-34  Score=256.83  Aligned_cols=236  Identities=28%  Similarity=0.448  Sum_probs=198.4

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|..+|.+++|+|   +|++|++|+.|+.+++|+. +++.+..+.+|...|.+++|+|++.++++++.|++|++||
T Consensus       338 ~~~~~~~~~v~~~~~s~---~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSP---DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  413 (577)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEeCCCCCEEEEEECC---CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            34578999999999996   8999999999999999995 5778889999999999999999999999999999999999


Q ss_pred             CCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      .. ++.+..+ .|...|..++|+|++++|++++.|+.+++||+.. + .......|...+.+++|+|++. ++++++.|+
T Consensus       414 ~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~-~las~~~d~  489 (577)
T 2ymu_A          414 RN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDK  489 (577)
T ss_dssp             TT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSC-EEEEEETTS
T ss_pred             CC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCC
Confidence            64 4444444 5888999999999999999999999999999743 2 2344556788999999998655 566778889


Q ss_pred             eEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEE
Q 024676          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  245 (264)
                      .|++||. +++++..+.. ..+|++++|+|++++|++ +.|+.|++||. +++++..+..+.. ...+.|.| ++++|++
T Consensus       490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~-dg~~l~s  566 (577)
T 2ymu_A          490 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIAS  566 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred             EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEE
Confidence            9999995 6777777754 567999999999987765 56899999996 5677788876544 45667777 5899999


Q ss_pred             ecCCCeEEEEE
Q 024676          246 GGEDMWVHVFD  256 (264)
Q Consensus       246 gs~d~~v~vwd  256 (264)
                      +|.|++|++||
T Consensus       567 ~~~D~~i~~Wd  577 (577)
T 2ymu_A          567 ASSDKTVKLWN  577 (577)
T ss_dssp             EETTSCEEEEC
T ss_pred             EeCCCEEEEeC
Confidence            99999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.2e-35  Score=248.77  Aligned_cols=238  Identities=12%  Similarity=0.117  Sum_probs=193.4

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~   98 (264)
                      +....|+   +++++|++|+.|+.+++|+..+++.+..+.+|.+.|.+++|+|++.++++|+.|++|++||+.+++....
T Consensus       100 ~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  176 (420)
T 3vl1_A          100 TAVDTAK---LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT  176 (420)
T ss_dssp             EEEEEEC---SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE
T ss_pred             eEEEEEe---cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE
Confidence            3344555   4899999999999999999999998888899999999999999999999999999999999999887777


Q ss_pred             ee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec--cCCCCeEEEEEec--------------------
Q 024676           99 FE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLH--------------------  155 (264)
Q Consensus        99 ~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~--------------------  155 (264)
                      +. |..+|.+++|+|++++|++++.|+.+++||+++++.......  .+...+.++++.+                    
T Consensus       177 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            65 888999999999999999999999999999987654332221  2445566666532                    


Q ss_pred             CCCeEEEEeeCCCeEEEEECCCCceeEEec--CCCCEEEEEEcCCCc-EEE-EeCCCcEEEEECCCcee-eeEEec-CCC
Q 024676          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHFGL-VKGYNM-PCN  229 (264)
Q Consensus       156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~-~l~-~~~~~~i~iwd~~~~~~-~~~~~~-~~~  229 (264)
                      +++.++++++.|+.|++||+++++.+..+.  +..++.+++|+|++. +++ ++.|+.|++||+++.+. +..+.. +..
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~  336 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT  336 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence            245577788889999999999998877664  346799999999997 655 46689999999998744 666655 334


Q ss_pred             CceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       230 ~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      .....+.+ .+.+|++++.|+.|++||+...
T Consensus       337 ~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          337 PINNVYFA-AGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             CEEEEEEE-TTEEEEEETTTEEEEEEEECCT
T ss_pred             CceEEEeC-CCCEEEEecCCccEEEEeccCC
Confidence            44444555 4789999999999999998763

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-35  Score=238.32  Aligned_cols=244  Identities=17%  Similarity=0.255  Sum_probs=203.0

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      .....+.+|.++|.+++| |   ++++|++|+.|+.+++|+..+++....+..|.+.|.+++|+|++.++++++.|+.++
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-V---DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-E---ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             HHHHHhhCCCCCcEEEEe-c---CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            445567899999999999 5   788999999999999999999988888999999999999999999999999999999


Q ss_pred             EEeCCCC---cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           87 LWDALTG---DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        87 iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      +|++...   .....+ .|..+|.++.|  +++++++++.|+.+++||.  .+ .......+...+.++++.+.++..++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~-~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GS-LVYNLQAHNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TE-EEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--Cc-EEEecccCCCceeEEEEccCCCCEEE
Confidence            9998764   333333 47889999999  5779999999999999992  22 23344567889999999986666778


Q ss_pred             EeeCCCeEEEEECCCCceeEEec--CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCC
Q 024676          163 SCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKL  239 (264)
Q Consensus       163 ~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~  239 (264)
                      +++.|+.|++||.  ++....+.  +...+.+++++|++.+++++.++.|++||+++++.+..+..+. ....+.+.++ 
T Consensus       160 ~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-  236 (313)
T 3odt_A          160 TASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN-  236 (313)
T ss_dssp             EEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-
T ss_pred             EEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC-
Confidence            8888999999994  44444454  5677999999999997777889999999999999998887544 4456677774 


Q ss_pred             CCEEEEecCCCeEEEEEcCcceee
Q 024676          240 GNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       240 ~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      + .|++++.|+.|++||+.+++.+
T Consensus       237 ~-~l~~~~~dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          237 G-DIVSCGEDRTVRIWSKENGSLK  259 (313)
T ss_dssp             S-CEEEEETTSEEEEECTTTCCEE
T ss_pred             C-CEEEEecCCEEEEEECCCCcee
Confidence            5 5899999999999999988754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=266.62  Aligned_cols=244  Identities=14%  Similarity=0.107  Sum_probs=187.0

Q ss_pred             ccCCCeeeeEeccCCCC------CeEEEE-------------------EeCCCCcEEEeCCCCce----EEeeeCCcCCE
Q 024676           14 GHSRPVVDLFYSPITPD------GFFLVS-------------------ASKDSSPMLRNGETGDW----IGTFEGHKGAV   64 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~------g~~l~t-------------------~s~d~~v~i~~~~~~~~----~~~~~~H~~~V   64 (264)
                      .+.++|.+|+|+|..++      +++||+                   ++.|++|++|+..+++.    ...+.+|.+.|
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V  210 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV  210 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence            36788999999985411      156655                   56788999999987764    24567789999


Q ss_pred             EEEEECCC------CcEEEEecCCCeEEEEeCCCCcEE-----------EEe-ecCCeEEEEEECCCCCEEEEeeCCCcE
Q 024676           65 WSCCLDAN------ALFSASGSADFTAKLWDALTGDEK-----------HSF-EHKHIVRACAFSEDTHLLLTGGFEKIL  126 (264)
Q Consensus        65 ~~v~~~~~------~~~l~s~s~D~~v~iwd~~~~~~~-----------~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i  126 (264)
                      +.++|+|+      +.+|||++.|++|+|||+..+...           ..+ .|..+|.+++|+|++ .|++|+.|++|
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV  289 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFV  289 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEE
Confidence            99999986      579999999999999999766321           133 377899999999864 89999999999


Q ss_pred             EEeeCCCCCCCCeEeccCCCCeEEEE-EecCCC-eEEEEeeCCCeEEEEECCCCceeEEecCC---CCEEEEEEcCCCcE
Q 024676          127 RIFDLNRPDAPPREVGNSSGSIRTVA-WLHSDQ-TILSSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRY  201 (264)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~  201 (264)
                      ++||++++.........|...|.+++ ..++++ .++++++.|++|+|||++++++...+..+   ..+.+++|+|+++.
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~  369 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS  369 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe
Confidence            99999876555555667888999995 334444 78899999999999999998765544322   24788999999877


Q ss_pred             EEE-eCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          202 ITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       202 l~~-~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      +++ +.|++|++||++++.++..+..+. ...+++++| .+.+|++||.|++|++||+..
T Consensus       370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCS
T ss_pred             EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechH
Confidence            665 557899999999988777766544 345667776 588999999999999999753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.8e-35  Score=245.78  Aligned_cols=248  Identities=17%  Similarity=0.202  Sum_probs=195.8

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-eEEeeeCCcCCEEEEE------ECCCCcEEEEecCCCe
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCC------LDANALFSASGSADFT   84 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~~H~~~V~~v~------~~~~~~~l~s~s~D~~   84 (264)
                      ..+|..+|.+++|+|..++|++|++|+.|+.+++|+..+++ .+..+.+|.+.|.+++      |++++.++++++.|++
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            34899999999999865568999999999999999999987 7889999999999995      5789999999999999


Q ss_pred             EEEEeCCCCc-EEEEee-c----CCeEEEEE----ECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe
Q 024676           85 AKLWDALTGD-EKHSFE-H----KHIVRACA----FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (264)
Q Consensus        85 v~iwd~~~~~-~~~~~~-~----~~~v~~~~----~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~  154 (264)
                      |++||+.++. ....+. +    ...+..+.    |+|+++++++++.|+.|++||+++++.  .....+...+.+++|.
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~  218 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFD  218 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEES
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcC
Confidence            9999999876 555553 2    23788887    788999999999999999999987654  2334567899999999


Q ss_pred             c---CCCeEEEEeeCCCeEEEEECCCCceeEEe------cCCCCEEEEEEcCCCc-EEE-EeCCCcEEEEECCCc-----
Q 024676          155 H---SDQTILSSCTDSGGVRLWDARSGKIVQTL------ETKSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHF-----  218 (264)
Q Consensus       155 ~---~~~~~~~~~~~d~~v~iwd~~~~~~~~~~------~~~~~v~~~~~s~~~~-~l~-~~~~~~i~iwd~~~~-----  218 (264)
                      |   ++. ++++++.|+.|++||+++++.+..+      .+..++.+++|+|++. +++ ++.|+.|++||++..     
T Consensus       219 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          219 RKDISMN-KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             CSSSSCC-EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred             CCCCCCC-EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence            8   444 5666778899999999987654333      3567899999999987 554 566899999999753     


Q ss_pred             --------------eeeeEEecCC-CCceeeEcCCCCCEEE-EecCCCeEEEEEcCcceee
Q 024676          219 --------------GLVKGYNMPC-NTESASLEPKLGNIFI-AGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       219 --------------~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gs~d~~v~vwd~~~g~~i  263 (264)
                                    +.+..+..+. ....+.+.++ +++|+ +|+.|+.|++||+.+.+.|
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD-KRGLCVCSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS-STTEEEEEETTSEEEEEEECC----
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcCC-CCeEEEEecCCCcEEEEECCCcccC
Confidence                          3455555443 3456777775 66666 8999999999999887654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.8e-35  Score=251.67  Aligned_cols=244  Identities=16%  Similarity=0.212  Sum_probs=195.0

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .+.+|..+|.+++|+|   ++++|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+|++.++++++.|++|++||+
T Consensus       134 ~~~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFP---SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC  210 (420)
T ss_dssp             ETTSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             ecccccCccEEEEECC---CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence            3468999999999996   8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEee----cCCeEEEE---------------------EECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCC
Q 024676           91 LTGDEKHSFE----HKHIVRAC---------------------AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS  145 (264)
Q Consensus        91 ~~~~~~~~~~----~~~~v~~~---------------------~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~  145 (264)
                      .+++....+.    +...+..+                     +|+|+++++++++.|+.|++||+++++........+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  290 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT  290 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence            9998877775    33345544                     4578999999999999999999987765544545577


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce-eEEec--CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceee
Q 024676          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV  221 (264)
Q Consensus       146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~--~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~  221 (264)
                      ..+.+++|+|++..++++++.|+.|++||+++++. +..+.  +..++.++.++ ++.++++ +.|+.|++||+...+..
T Consensus       291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCCC
Confidence            89999999998876788888899999999998754 55554  45668888655 5656554 56899999998763211


Q ss_pred             ---------eEE-ecCCCCceeeEcCCCCC---EEEEecCCCeEEEEEcCc
Q 024676          222 ---------KGY-NMPCNTESASLEPKLGN---IFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       222 ---------~~~-~~~~~~~~~~~~~~~~~---~~~~gs~d~~v~vwd~~~  259 (264)
                               ..+ .........++.|+ +.   .+++.|.++.+++|++..
T Consensus       370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          370 RPAIEFETPTFLVSNDDAVSQFCYVSD-DESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SCEECTTSCEEECCSSCCCCEEEEECC-SSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccceeccCccEEccCCcceEEEEEccC-CCCcceEEEEcCCceEEEEeccC
Confidence                     111 12234556777775 55   567777789999999753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-34  Score=245.65  Aligned_cols=240  Identities=16%  Similarity=0.178  Sum_probs=189.6

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC---CcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~---H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      .+|...|.+++|+|  .++++|++++.|+.+++||+.+ ..+..+..   |...|.+++|+|++.++++|+.|+.|++||
T Consensus       115 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  191 (383)
T 3ei3_B          115 MGPGDAITGMKFNQ--FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG  191 (383)
T ss_dssp             CSTTCBEEEEEEET--TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             CCcCCceeEEEeCC--CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence            47999999999996  2678999999999999999985 44555544   458899999999999999999999999999


Q ss_pred             CCCCcEEEEe-ecCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCCCC--CeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           90 ALTGDEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        90 ~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      +. +..+..+ .|...|.+++|+|+++ ++++++.|+.|++||+++.+..  ......+...+.+++|+|.++.++++++
T Consensus       192 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          192 LD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             TT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred             CC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence            94 5555555 4888999999999998 9999999999999999864321  2222357889999999983444566777


Q ss_pred             CCCeEEEEECCCCceeEEecC------------------CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC
Q 024676          166 DSGGVRLWDARSGKIVQTLET------------------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      .|+.|++||+++++....+..                  ...+..+.++|++++ +++.|+.|++||+++++.+..+..+
T Consensus       271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCC
Confidence            889999999998876544431                  123445667777777 5556899999999999998888753


Q ss_pred             --CCCce-eeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          228 --CNTES-ASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       228 --~~~~~-~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                        ..... ..+.+ ++.+|++|+ |+.|++||+++
T Consensus       350 ~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          350 NAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence              23333 37777 588999997 99999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.3e-35  Score=244.35  Aligned_cols=242  Identities=11%  Similarity=0.019  Sum_probs=199.5

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---eEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeEEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKL   87 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~i   87 (264)
                      ..+|.+.|.+++|+|   ++++|++++.|+.|++|+..+++   ....+.+|...|.+++|+|++. ++++|+.|+.|++
T Consensus         7 ~~~h~~~v~~~~~s~---~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            7 EQAPKDYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ccCCCCcEEEEEEcC---CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            358999999999997   88999999999999999998876   3455668999999999999999 9999999999999


Q ss_pred             EeC-CCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC---------CCCCCeEeccCCCCeEEEEEec
Q 024676           88 WDA-LTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR---------PDAPPREVGNSSGSIRTVAWLH  155 (264)
Q Consensus        88 wd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~i~~~~~~~  155 (264)
                      ||+ .++.......  |...|.+++|+| ++++++++.|+.|++||+++         .+.... . .+...+.+++|.+
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-T-KVKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-S-SSCCCEEEEEECS
T ss_pred             EEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-E-eeCCceEEEEecC
Confidence            999 8887655556  889999999999 99999999999999999876         443322 2 2678899999986


Q ss_pred             CCCeEEEEeeCCCeEEEEECCC-Ccee---EEecCCCCEEEEEEcC-CCcEEEE-eCCCcEEEEECCCc------eeeeE
Q 024676          156 SDQTILSSCTDSGGVRLWDARS-GKIV---QTLETKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHF------GLVKG  223 (264)
Q Consensus       156 ~~~~~~~~~~~d~~v~iwd~~~-~~~~---~~~~~~~~v~~~~~s~-~~~~l~~-~~~~~i~iwd~~~~------~~~~~  223 (264)
                      +.   +++++.|+.|++||+++ ++..   ....+..++.+++++| ++.++++ +.++.|++|+++..      +....
T Consensus       161 ~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          161 SR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             Cc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            54   66677889999999998 5532   2334567899999999 8877655 56899999999876      66666


Q ss_pred             EecCC----------CCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          224 YNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       224 ~~~~~----------~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +..+.          ....+.+.| .+.+|++|+.|+.|++||+.+++.+
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             eecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHh
Confidence            65542          344567777 5889999999999999999988764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=231.23  Aligned_cols=249  Identities=15%  Similarity=0.236  Sum_probs=207.5

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      ....+++|...|.+|+|+|   +|++|++|+.|++|++|+.++++.++.+.+|...+.++.+  ++..+++++.++.+++
T Consensus        59 ~~~~~~~~~~~V~~v~~~~---~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~  133 (318)
T 4ggc_A           59 QLLQMEQPGEYISSVAWIK---EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHH  133 (318)
T ss_dssp             EEEECCSTTCCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             EEEEecCCCCeEEEEEECC---CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEe
Confidence            3344568999999999996   8999999999999999999999999999999999876655  5678999999999999


Q ss_pred             EeCCCCcE-EEE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC---CeEeccCCCCeEEEEEecCCCeEE-
Q 024676           88 WDALTGDE-KHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTIL-  161 (264)
Q Consensus        88 wd~~~~~~-~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~-  161 (264)
                      |+...... ... ..|...+..+.++++++++++++.|+.|++||+++++..   ......+.+.+..+++.+.+..++ 
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  213 (318)
T 4ggc_A          134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  213 (318)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred             eecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence            99887643 333 357889999999999999999999999999999876532   233445677899999988777654 


Q ss_pred             -EEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-e--CCCcEEEEECCCceeeeEEecCCC-CceeeEc
Q 024676          162 -SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A--DGSSVKFWDANHFGLVKGYNMPCN-TESASLE  236 (264)
Q Consensus       162 -~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~--~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~  236 (264)
                       ++++.++.|++||.++............+..+.++|++..+++ +  .|+.|++||+++++++..+..+.. ...++++
T Consensus       214 ~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s  293 (318)
T 4ggc_A          214 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS  293 (318)
T ss_dssp             EEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence             4566789999999999998888888888999999999876543 3  478999999999999999986554 4556777


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCccee
Q 024676          237 PKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      | ++.+|++||.|++|++||+.+.++
T Consensus       294 p-dg~~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          294 P-DGATVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             T-TSSCEEEEETTTEEEEECCSCCCC
T ss_pred             C-CCCEEEEEecCCeEEEEECCCCCC
Confidence            7 588999999999999999977654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.4e-35  Score=248.53  Aligned_cols=250  Identities=16%  Similarity=0.170  Sum_probs=204.0

Q ss_pred             cceEeeccCCCeeeeEeccC-CCCC---eEEEEEeCCCCcEEEeCCCCce-----EEeeeCC-----cCCEEEEEEC---
Q 024676            8 VPLVCHGHSRPVVDLFYSPI-TPDG---FFLVSASKDSSPMLRNGETGDW-----IGTFEGH-----KGAVWSCCLD---   70 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~-~~~g---~~l~t~s~d~~v~i~~~~~~~~-----~~~~~~H-----~~~V~~v~~~---   70 (264)
                      ....+.+|..+|.+++|+|. .++|   ++|++++.|+.|++|+..+++.     +..+.+|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            45566799999999999971 1128   9999999999999999998876     7888888     6999999999   


Q ss_pred             -CCCcE-EEEecCCCeEEEEeCCC------CcEEE-----Eee--------cCCeEEEEEECCCCCEEEEeeCCCcEEEe
Q 024676           71 -ANALF-SASGSADFTAKLWDALT------GDEKH-----SFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (264)
Q Consensus        71 -~~~~~-l~s~s~D~~v~iwd~~~------~~~~~-----~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  129 (264)
                       |++.+ +++++.|+.|++||+.+      +..+.     .+.        |...+.+++|+|++ ++++++.|+.+++|
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence             99999 99999999999999987      54433     442        67789999999999 99999999999999


Q ss_pred             eCCCCCCCCeEecc---C---CCCeEEEEEecCCCeEEEEeeCC---CeEEEEECCCCceeEEec--------------C
Q 024676          130 DLNRPDAPPREVGN---S---SGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTLE--------------T  186 (264)
Q Consensus       130 d~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~~~--------------~  186 (264)
                      |+++++.. ..+..   |   ...+.+++|+|++. ++++++.|   +.|++||+++++.+..+.              +
T Consensus       213 d~~~~~~~-~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          213 ELSTLRPL-YNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             ETTTTEEE-EEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             ECCCCcee-EEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence            99876533 33334   5   78899999998765 56667778   899999999999888776              4


Q ss_pred             CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEe------cC----------------CCCceeeEcCCCC---
Q 024676          187 KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN------MP----------------CNTESASLEPKLG---  240 (264)
Q Consensus       187 ~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~------~~----------------~~~~~~~~~~~~~---  240 (264)
                      ..++.+++|+|++++|++ +.|+.|++||+++++.+..+.      .+                .....+.+.++ +   
T Consensus       291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~-g~~~  369 (397)
T 1sq9_A          291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK-GWRS  369 (397)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT-TTSB
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc-cccc
Confidence            677999999999988765 568999999999999998888      33                34556777775 4   


Q ss_pred             -------CEEEEecCCCeEEEEEcCcce
Q 024676          241 -------NIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       241 -------~~~~~gs~d~~v~vwd~~~g~  261 (264)
                             .+|++|+.|+.|++||+.+|+
T Consensus       370 ~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          370 GMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             STTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccceEEEecCCCcEEEEEcCCCC
Confidence                   799999999999999998874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-34  Score=241.43  Aligned_cols=236  Identities=21%  Similarity=0.310  Sum_probs=201.7

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~   94 (264)
                      |..+|.+++|+|   ++++|++|+.|+.+++|+ .+++.+..+.+|...|.+++|+|++.++++++.|+.|++||+.++.
T Consensus       107 ~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          107 TTNQVTCLAWSH---DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             -CBCEEEEEECT---TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred             CCCceEEEEEcC---CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence            788999999996   899999999999999999 6678888999999999999999999999999999999999997765


Q ss_pred             EEEEe---------------------------------------------------------ecCCeEEEEEECCCCCEE
Q 024676           95 EKHSF---------------------------------------------------------EHKHIVRACAFSEDTHLL  117 (264)
Q Consensus        95 ~~~~~---------------------------------------------------------~~~~~v~~~~~~~~~~~l  117 (264)
                      ....+                                                         .|..+|..++|+|++++|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  262 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL  262 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence            43321                                                         245679999999999999


Q ss_pred             EEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEc
Q 024676          118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVS  196 (264)
Q Consensus       118 ~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s  196 (264)
                      ++++.|+.+++||++.++.. .....+...+.+++|.+++  ++++++.|+.|++||+++++.+..+.. ..++.+++++
T Consensus       263 ~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGNGNSQ-NCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EEEETTSCEEEECSSSBSCS-EEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCccc-eEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            99999999999999876543 4445578899999999876  677778889999999999998887764 5689999999


Q ss_pred             CCCcEEEE-eCCCcEEEEECCCce--------------------eeeEEecC--C-CCceeeEcCCCCCEEEEecCCCeE
Q 024676          197 RDGRYITT-ADGSSVKFWDANHFG--------------------LVKGYNMP--C-NTESASLEPKLGNIFIAGGEDMWV  252 (264)
Q Consensus       197 ~~~~~l~~-~~~~~i~iwd~~~~~--------------------~~~~~~~~--~-~~~~~~~~~~~~~~~~~gs~d~~v  252 (264)
                      |+++++++ +.++.|++||+++.+                    .+..+..+  . ....+.+.+ ++++|++++.|+.|
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEG  418 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCC
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceE
Confidence            99988765 568899999999887                    77777765  3 455677777 48899999999999


Q ss_pred             EEEEcC
Q 024676          253 HVFDFH  258 (264)
Q Consensus       253 ~vwd~~  258 (264)
                      ++||+.
T Consensus       419 ~iw~~~  424 (425)
T 1r5m_A          419 SVVAIP  424 (425)
T ss_dssp             EEEECC
T ss_pred             EEEeec
Confidence            999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.5e-35  Score=243.18  Aligned_cols=248  Identities=20%  Similarity=0.237  Sum_probs=196.7

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceE-EeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWI-GTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~-~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      ..++.+|.++|.+|+|+|...+|++|++|+.|+.|++|+..+ +..+ ..+.+|.+.|.+++|+|++.++++++.|++|+
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  111 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK  111 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence            344579999999999998433479999999999999999987 5544 78889999999999999999999999999999


Q ss_pred             EEeCCCCcEEEEeecCCeEEEEEE--CCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC--------------------
Q 024676           87 LWDALTGDEKHSFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS--------------------  144 (264)
Q Consensus        87 iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~--------------------  144 (264)
                      +||+.++.......|..+|.+++|  +|+++++++++.|+.|++||+++++.......+.                    
T Consensus       112 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 3mmy_A          112 MWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERG  191 (368)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGC
T ss_pred             EEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCc
Confidence            999999998888889999999999  9999999999999999999998765432222111                    


Q ss_pred             --------------------CCCeEEEEEecCCC---eEEEEeeCCCeEEEEECCCC---ceeEEecCCC----------
Q 024676          145 --------------------SGSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSG---KIVQTLETKS----------  188 (264)
Q Consensus       145 --------------------~~~i~~~~~~~~~~---~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~----------  188 (264)
                                          .....++.+.+...   ..+++++.|+.|++||++..   +.+..+..+.          
T Consensus       192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (368)
T 3mmy_A          192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQ  271 (368)
T ss_dssp             EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCE
T ss_pred             EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccc
Confidence                                12233333332221   23777788899999999987   4455554432          


Q ss_pred             ---CEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          189 ---PVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       189 ---~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                         ++.+++|+|++++|++ +.|+.|++||+++++++..+..+. ....+.++| ++.+|++||.|+..+.|++
T Consensus       272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGG
T ss_pred             cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccccccccc
Confidence               6999999999977655 568999999999999988887644 445677777 5899999999886665553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-34  Score=242.17  Aligned_cols=246  Identities=16%  Similarity=0.240  Sum_probs=199.8

Q ss_pred             eEeeccCCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeC----CCCc------eEEeeeC----------CcCCEEEEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNG----ETGD------WIGTFEG----------HKGAVWSCC   68 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~----~~~~------~~~~~~~----------H~~~V~~v~   68 (264)
                      +..+.|.++|.+++|+|   +|+ +|++|+.|+.+++|+.    .+++      ....+..          |.+.|.+++
T Consensus        39 ~~~~~~~~~v~~~~~s~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNP---LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             CEEEEECSCCSEEEECS---SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             eeeeeccCceEEEEECC---CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence            33467889999999996   888 9999999999999999    8887      4444443          788999999


Q ss_pred             ECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC----------
Q 024676           69 LDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP----------  137 (264)
Q Consensus        69 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~----------  137 (264)
                      |+|++.++++|+.|+.|++|| .++.....+. |..+|.+++|+|++++|++++.|+.+++||+++++..          
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             EcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            999999999999999999999 5555555554 8889999999999999999999999999998654321          


Q ss_pred             ---------------------------------------------CeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676          138 ---------------------------------------------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus       138 ---------------------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                                                                   ......+...+.+++|++++. ++++++.|+.|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i  273 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRI  273 (425)
T ss_dssp             -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEE
T ss_pred             cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEE
Confidence                                                         112234567889999998766 5666778899999


Q ss_pred             EECCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCC
Q 024676          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDM  250 (264)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~  250 (264)
                      ||+++++.+..+. +..++.++.++|++.+++++.++.|++||+++++.+..+..+. ....+.+.| .+.+|++++.|+
T Consensus       274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg  352 (425)
T 1r5m_A          274 WHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDG  352 (425)
T ss_dssp             ECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTS
T ss_pred             EECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCC
Confidence            9999998888775 5567999999999955566778999999999999888887644 445667777 589999999999


Q ss_pred             eEEEEEcCcce
Q 024676          251 WVHVFDFHTGE  261 (264)
Q Consensus       251 ~v~vwd~~~g~  261 (264)
                      .|++||+.+++
T Consensus       353 ~i~i~~~~~~~  363 (425)
T 1r5m_A          353 QVNVYDLKKLN  363 (425)
T ss_dssp             CEEEEECHHHH
T ss_pred             eEEEEECCCCc
Confidence            99999998776

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=253.04  Aligned_cols=250  Identities=14%  Similarity=0.159  Sum_probs=203.4

Q ss_pred             cceEeeccCCCeeeeEeccCCCC-CeEEEEEeCCCCcEEEeCCCCc------eE---EeeeCCcCCEEEEEECCC-CcEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGD------WI---GTFEGHKGAVWSCCLDAN-ALFS   76 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~-g~~l~t~s~d~~v~i~~~~~~~------~~---~~~~~H~~~V~~v~~~~~-~~~l   76 (264)
                      ....+.+|..+|.+++|+|   + +++|++++.|+.|++||..+++      ..   ..+.+|.+.|.+++|+|+ +.++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  181 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNA---KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF  181 (416)
T ss_dssp             EEEECCCSSSCCCEEEECS---SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred             chhhccCCccceEEEEEcC---CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence            3445578999999999997   5 7899999999999999998876      32   234679999999999999 7899


Q ss_pred             EEecCCCeEEEEeCCCCcEEEEeec-------CCeEEEEEECCCC-CEEEEeeCCC---cEEEeeCCCCCCCCeEec-cC
Q 024676           77 ASGSADFTAKLWDALTGDEKHSFEH-------KHIVRACAFSEDT-HLLLTGGFEK---ILRIFDLNRPDAPPREVG-NS  144 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l~s~~~d~---~i~~~d~~~~~~~~~~~~-~~  144 (264)
                      ++++.|+.|++||+.+++....+..       ...+.+++|+|++ .++++++.|+   .|++||++++........ .|
T Consensus       182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~  261 (416)
T 2pm9_A          182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH  261 (416)
T ss_dssp             EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred             EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc
Confidence            9999999999999999988777763       6789999999987 6899999998   999999987654445555 67


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCC-cEEEE-eCCCcEEEEECCCceee
Q 024676          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGLV  221 (264)
Q Consensus       145 ~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~-~~l~~-~~~~~i~iwd~~~~~~~  221 (264)
                      ...+.+++|+|.++.++++++.|+.|++||+++++++..+.. ..++.+++|+|++ .++++ +.|+.|++||+.+....
T Consensus       262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            889999999985666777888889999999999998888764 5679999999998 67766 45899999999875432


Q ss_pred             eEE---------------e---------------------cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          222 KGY---------------N---------------------MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       222 ~~~---------------~---------------------~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ...               .                     ........+|.+ +|++|++|+.|+.|++|++.+.+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~~~~~~  416 (416)
T 2pm9_A          342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITNPKISG  416 (416)
T ss_dssp             SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBCCCCC-
T ss_pred             cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEEeccCC
Confidence            111               0                     011222566777 59999999999999999998753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.4e-34  Score=246.73  Aligned_cols=248  Identities=18%  Similarity=0.254  Sum_probs=202.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC----------CceEEeeeCCcCCEEEEEECCCCc-EEEE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------GDWIGTFEGHKGAVWSCCLDANAL-FSAS   78 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~----------~~~~~~~~~H~~~V~~v~~~~~~~-~l~s   78 (264)
                      ....+|.++|.+|+|+|.  ++++|++++.|+.|++|+..+          .+.+..+.+|.+.|.+++|+|++. ++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~--~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQ--NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEEEEESSCCSEEEEETT--EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             EEEEcCCCcEEEEEECCC--CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            344689999999999971  368999999999999999876          566778899999999999999988 9999


Q ss_pred             ecCCCeEEEEeCCCCcE-------EEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCC--CCCeEeccCCCC
Q 024676           79 GSADFTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPD--APPREVGNSSGS  147 (264)
Q Consensus        79 ~s~D~~v~iwd~~~~~~-------~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~--~~~~~~~~~~~~  147 (264)
                      |+.||+|++||+.++..       ...+ .|...|.+++|+| ++.++++++.|+.|++||+++..  ........+...
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            99999999999987421       2223 5788999999999 77899999999999999998763  334455577889


Q ss_pred             eEEEEEecCCCeEEEEeeCCCeEEEEECCC-CceeEEec-CCCCEEEEEEcCCCc-EE-EEeCCCcEEEEECCCc-----
Q 024676          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGR-YI-TTADGSSVKFWDANHF-----  218 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~-~l-~~~~~~~i~iwd~~~~-----  218 (264)
                      +.+++|+|.+..++++++.|+.|++||+++ .+++..+. +..++.+++|+|++. ++ +++.++.|++||++..     
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            999999998888888899999999999998 45566665 567899999999984 44 4567899999999872     


Q ss_pred             ---------eeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          219 ---------GLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       219 ---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                               ..+..+..+. .+..+.+.++...++++++.|+.|++|++.+
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                     3344444333 3567788886434999999999999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-35  Score=268.95  Aligned_cols=248  Identities=19%  Similarity=0.270  Sum_probs=198.6

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC--CCceEEeeeCCcCCEEEEEECCC--CcEEEEecCCCeE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTA   85 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~--~~~~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v   85 (264)
                      .++.||.++|.+++|+|   +|++|++|+.||.|++|+..  +++.+..+.+|.++|.+++|+++  +.++++|+.||+|
T Consensus         3 ~~l~gH~~~V~~l~~s~---dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            3 VIANAHNELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             -----CCCCEEEECCCS---SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eecccCcceeEEEEECC---CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            45689999999999996   88999999999999999987  44667889999999999999988  8999999999999


Q ss_pred             EEEeCCCCc--EEEEe-ecCCeEEEEEECCC--CCEEEEeeCCCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecC---
Q 024676           86 KLWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHS---  156 (264)
Q Consensus        86 ~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~---  156 (264)
                      ++||+.++.  ....+ .|..+|.+++|+|+  ++++++|+.|+.|++||++.+.. .......+...+.+++|.|.   
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            999999885  33333 48889999999999  99999999999999999987643 33445567889999999985   


Q ss_pred             ---------CCeEEEEeeCCCeEEEEECCCCc----eeEEec-CCCCEEEEEEcCC---CcEEEE-eCCCcEEEEECCCc
Q 024676          157 ---------DQTILSSCTDSGGVRLWDARSGK----IVQTLE-TKSPVTSAEVSRD---GRYITT-ADGSSVKFWDANHF  218 (264)
Q Consensus       157 ---------~~~~~~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~s~~---~~~l~~-~~~~~i~iwd~~~~  218 (264)
                               ++.++++++.||.|++||++++.    ....+. +..+|.+++|+|+   +.++++ +.|+.|++||+++.
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                     35567778888999999998874    344444 4567999999999   777655 56899999999876


Q ss_pred             ee-----eeEE-ecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          219 GL-----VKGY-NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       219 ~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      +.     +... ........+.+.| ++.+|++|+.|+.|++||+.++.
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          240 QGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence            31     1111 1233445677887 48899999999999999988543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=230.57  Aligned_cols=242  Identities=21%  Similarity=0.296  Sum_probs=200.5

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      .....+|..+|.+++|+|   ++++|++|+.|+.+++|++...   +.+..+.+|...|.+++|  ++.++++++.|+.|
T Consensus        52 ~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i  126 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDS---EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA  126 (313)
T ss_dssp             EEEEEECSSCEEEEEEET---TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             EEEeecCCccEEEEEECC---CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence            445578999999999996   8899999999999999998654   557788999999999999  57789999999999


Q ss_pred             EEEeCCCCcEEEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           86 KLWDALTGDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        86 ~iwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      ++||  .+.....+ .|..++..+.+.| +++++++++.|+.+++||...  ........+...+.+++|.+++.  +++
T Consensus       127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~--~~~  200 (313)
T 3odt_A          127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGH--FIS  200 (313)
T ss_dssp             EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEEECSSCSSCEEEEEEEETTE--EEE
T ss_pred             EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEEEeccCcccEEEEEEcCCCe--EEE
Confidence            9999  44444444 4788999999988 899999999999999999432  22222233788899999998665  667


Q ss_pred             eeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCC
Q 024676          164 CTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGN  241 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~  241 (264)
                      ++.|+.|++||+++++.+..+. +..++.+++++|++++++++.++.|++||+++++.+..+..+.. ...+.+.++ ++
T Consensus       201 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~  279 (313)
T 3odt_A          201 CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN-GD  279 (313)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT-SC
T ss_pred             ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccC-CC
Confidence            7788999999999999888886 55679999999999888888899999999999999888877653 456677774 56


Q ss_pred             EEEEecCCCeEEEEEcCcceee
Q 024676          242 IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                       +++++.|+.|++||+.+++.+
T Consensus       280 -~~~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          280 -IIVGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             -EEEEETTSCEEEEESCGGGCC
T ss_pred             -EEEEeCCCcEEEEeCCCCcee
Confidence             677999999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.3e-35  Score=243.89  Aligned_cols=249  Identities=10%  Similarity=0.215  Sum_probs=196.4

Q ss_pred             EeeccCCCeeeeEeccCCCCC-eEEEEEeCCCCcEEEeCCCCceEEeeeC-----CcCCEEEEEECCC----CcEEEEec
Q 024676           11 VCHGHSRPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEG-----HKGAVWSCCLDAN----ALFSASGS   80 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g-~~l~t~s~d~~v~i~~~~~~~~~~~~~~-----H~~~V~~v~~~~~----~~~l~s~s   80 (264)
                      +..+|..+|.+|+|+|.++++ ..+++++.++.|++|+..+++.+..+..     |...|.+++|+++    +.++++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            345899999999999864443 4556666677999999998877666654     5678999999998    67999999


Q ss_pred             CCCeEEEEeCCCCcEEEEee-cCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEe---ccCCCCeEEEEEec
Q 024676           81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLH  155 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~  155 (264)
                      .|+.|++||+.+++.+..+. |..+|.+++|+| ++++|++++.|+.|++||+++++.. ...   ..+...+.+++|+|
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV-AIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-EEECSTTSCSSCEEEEEECT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-EEecccccccCceeEEEECC
Confidence            99999999999998888876 889999999999 8999999999999999999876543 232   45788999999998


Q ss_pred             CCCeEEEEeeCCCeEEEEECCCCceeEEec-----------------------------CCCCEEEEEEcCCCcEEEEeC
Q 024676          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE-----------------------------TKSPVTSAEVSRDGRYITTAD  206 (264)
Q Consensus       156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~s~~~~~l~~~~  206 (264)
                      ++. ++++++.|+.|++||+++++....+.                             +...+.++.++ +..+++++.
T Consensus       172 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~  249 (366)
T 3k26_A          172 LGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSC  249 (366)
T ss_dssp             TSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECS
T ss_pred             CCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEec
Confidence            655 56677788999999999876543322                             55679999998 333445566


Q ss_pred             CCcEEEEECCCcee--------------eeEEecCC-CCceeeEcCC-CCCEEEEecCCCeEEEEEcCccee
Q 024676          207 GSSVKFWDANHFGL--------------VKGYNMPC-NTESASLEPK-LGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       207 ~~~i~iwd~~~~~~--------------~~~~~~~~-~~~~~~~~~~-~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ++.|++||+++...              +..+..+. ....+.+.++ .+.+|++|+.|+.|++||+.+++.
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            89999999987643              55555433 3444555553 188999999999999999988753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=235.71  Aligned_cols=247  Identities=13%  Similarity=0.177  Sum_probs=208.3

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC-----C
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-----F   83 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-----~   83 (264)
                      ...+.+|..+|.+++|+|   ++++|++++.|+.|++|++.+++.+..+. |...|.+++|+|++.++++++.+     +
T Consensus        67 ~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g  142 (369)
T 3zwl_B           67 LGTLDGHTGTIWSIDVDC---FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPG  142 (369)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred             hhhhhhcCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence            345578999999999996   88999999999999999999999888888 88999999999999999999999     9


Q ss_pred             eEEEEeCCCCcE------------EEEeecCC--eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeE
Q 024676           84 TAKLWDALTGDE------------KHSFEHKH--IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR  149 (264)
Q Consensus        84 ~v~iwd~~~~~~------------~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~  149 (264)
                      .|++||+.....            .....+..  .+..++|+|+++++++++.|+.|++||+++..........+...+.
T Consensus       143 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  222 (369)
T 3zwl_B          143 SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS  222 (369)
T ss_dssp             EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred             EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence            999999866531            11122333  8999999999999999999999999999874334455556788999


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCC--------------cEEEEE
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGS--------------SVKFWD  214 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~--------------~i~iwd  214 (264)
                      +++|+|++. ++++++.|+.|++||+++++.+..+....++..+.++|++++++++ .++              .+++||
T Consensus       223 ~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          223 DMQFSPDLT-YFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             EEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred             EEEECCCCC-EEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            999998655 5666778899999999999999888888899999999999987654 344              799999


Q ss_pred             CCCceeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          215 ANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       215 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ..+.+.+..+..+.. ...+.+.| ++++|++|+.|+.|++|++.++.
T Consensus       302 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          302 KIFEEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHH
T ss_pred             cCCCcchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcccc
Confidence            999998888876544 45567777 58999999999999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.6e-33  Score=247.93  Aligned_cols=242  Identities=28%  Similarity=0.472  Sum_probs=199.7

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|..+|.+++|+|   ++++|++++.|+.+++|+... ..+..+.+|...|.+++|+|++.++++|+.|+++++||
T Consensus       297 ~~~~~h~~~v~~~~~~~---~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSP---DGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  372 (577)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEecCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEc
Confidence            34578999999999996   899999999999999999764 45677889999999999999999999999999999999


Q ss_pred             CCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      .. ++.+..+ .|...|.+++|+|++++|++++.|+.|++||.. ++ .......|...+.+++|+|++. ++++++.|+
T Consensus       373 ~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~-~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~  448 (577)
T 2ymu_A          373 RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVWGVAFSPDDQ-TIASASDDK  448 (577)
T ss_dssp             TT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CC-EEEEecCCCCCeEEEEECCCCC-EEEEEcCCC
Confidence            64 4444444 488899999999999999999999999999964 32 2344556788999999988665 566778889


Q ss_pred             eEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEE
Q 024676          169 GVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  245 (264)
                      +|++||.. ++.+..+. +..++.+++|+|++++|++ +.|+.|++||. ++++++.+..+.. ...+++.| ++++|++
T Consensus       449 ~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s  525 (577)
T 2ymu_A          449 TVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIAS  525 (577)
T ss_dssp             EEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred             EEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEE
Confidence            99999964 55555554 5678999999999998876 56899999995 5677777876543 45667777 5899999


Q ss_pred             ecCCCeEEEEEcCcceee
Q 024676          246 GGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       246 gs~d~~v~vwd~~~g~~i  263 (264)
                      ++.|+.|++||. +|+.+
T Consensus       526 ~~~dg~v~lwd~-~~~~~  542 (577)
T 2ymu_A          526 ASDDKTVKLWNR-NGQLL  542 (577)
T ss_dssp             EETTSEEEEECT-TSCEE
T ss_pred             EECcCEEEEEeC-CCCEE
Confidence            999999999996 56543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3e-34  Score=244.64  Aligned_cols=246  Identities=20%  Similarity=0.294  Sum_probs=200.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-------ceEEeeeCCcCCEEEEEECCCC-cEEEEecC
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGSA   81 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-------~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~   81 (264)
                      ..+.+|..+|.+++|+|.  ++++|++|+.|+.|++|++.++       +.+..+.+|.+.|.+++|+|++ .++++++.
T Consensus        75 ~~~~~h~~~V~~~~~~p~--~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPH--NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             CCBCCCSSCEEEEEECTT--CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             ceEecCCCCEEEEEeCCC--CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            345799999999999962  6789999999999999999887       5577899999999999999998 69999999


Q ss_pred             CCeEEEEeCCCCcEEEEe---ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCC-eEEEEEecCC
Q 024676           82 DFTAKLWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSD  157 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~  157 (264)
                      |++|++||+.+++....+   .|...|.+++|+|++++|++++.|+.|++||+++++........+.+. +..++|+++ 
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  231 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-  231 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST-
T ss_pred             CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC-
Confidence            999999999999888877   378899999999999999999999999999998766443332344444 788899875 


Q ss_pred             CeEEEEe---eCCCeEEEEECCCCce---eEEecCCCCEEEEEEcCCCcEEE-Ee-CCCcEEEEECCCce----eeeEEe
Q 024676          158 QTILSSC---TDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFG----LVKGYN  225 (264)
Q Consensus       158 ~~~~~~~---~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~-~~-~~~~i~iwd~~~~~----~~~~~~  225 (264)
                      +.+++++   +.|+.|++||+++++.   ...+.+...+.+++|+|++.+++ ++ .|+.|++||+++.+    .+..+.
T Consensus       232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~  311 (402)
T 2aq5_A          232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS  311 (402)
T ss_dssp             TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred             CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence            4567676   6789999999998764   33345667799999999998774 45 48999999999876    334444


Q ss_pred             cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .......+.+.|+ +.+++  +.|+.+++|++.+++
T Consensus       312 ~~~~v~~~~~sp~-~~~~~--s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          312 SKESQRGMGYMPK-RGLEV--NKCEIARFYKLHERK  344 (402)
T ss_dssp             CSSCCSEEEECCG-GGSCG--GGTEEEEEEEEETTE
T ss_pred             cCCcccceEEecc-cccce--ecceeEEEEEcCCCc
Confidence            3456677888875 66554  457799999998765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-35  Score=249.90  Aligned_cols=204  Identities=13%  Similarity=0.105  Sum_probs=160.4

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---eEEeeeCCcCCEEEEEECCCCcEEEEecCCCe
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~   84 (264)
                      ....+.+|..+|.+++|+|   ++++|++++.|+.+++|+..+++   ....+.+|...|.+++|+|++.++++++.|++
T Consensus        47 ~~~~~~~h~~~v~~~~~s~---~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  123 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAP---KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARV  123 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECT---TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSC
T ss_pred             EEEEEecCCceEEEEEEeC---CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCe
Confidence            3344578999999999996   88999999999999999999877   56678889999999999999999999999999


Q ss_pred             EEEEeCCCCcE---EEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC-----------------CeEec
Q 024676           85 AKLWDALTGDE---KHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-----------------PREVG  142 (264)
Q Consensus        85 v~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-----------------~~~~~  142 (264)
                      |++||+.++..   ...+.  |...|.+++|+|++++|++++.|+.+++||++..+..                 .... 
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            99999988762   44443  7889999999999999999999999999998532211                 1112 


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce----eEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECC
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI----VQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~----~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~  216 (264)
                      .|.+.+.+++|+|++. ++++++.|+.|++||++++++    +..+. +..++.+++|+|++++++++.++.+.+|+..
T Consensus       203 ~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          203 PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            5778899999998765 566677889999999999886    55554 4467999999999999988877777788775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.9e-33  Score=241.67  Aligned_cols=244  Identities=22%  Similarity=0.356  Sum_probs=199.4

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEEC--CCCcEEEEecCCCeEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD--ANALFSASGSADFTAK   86 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~--~~~~~l~s~s~D~~v~   86 (264)
                      ...+.+|..+|.+++|+|   ++ +|++|+.|++|++||..+++.+..+.+|.+.|.+++|.  +++.++++|+.|++|+
T Consensus       155 ~~~~~~h~~~V~~l~~~~---~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~  230 (464)
T 3v7d_B          155 LLQLSGHDGGVWALKYAH---GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  230 (464)
T ss_dssp             EEEECCCSSCEEEEEECS---TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred             EEEEeCCCcCEEEEEEcC---CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence            344579999999999986   55 89999999999999999999999999999999999998  5789999999999999


Q ss_pred             EEeCCCCcEE-----------------------EE-eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676           87 LWDALTGDEK-----------------------HS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        87 iwd~~~~~~~-----------------------~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (264)
                      +||+.++...                       .. ..|...+..+  +++++++++++.|+.|++||+++++.. ....
T Consensus       231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~  307 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL-YILS  307 (464)
T ss_dssp             EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEE-EEEC
T ss_pred             EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE-EEec
Confidence            9999876532                       11 2355666665  677899999999999999999876543 3445


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceee
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV  221 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~  221 (264)
                      .|...+.+++|.+++. .+++++.|+.|++||+++++++..+.. ..++.++.+++ ..+++++.|+.|++||+++....
T Consensus       308 ~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          308 GHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRK  385 (464)
T ss_dssp             CCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCcee
Confidence            6788999999998665 566778889999999999999988864 56799999984 34455677899999999998776


Q ss_pred             eEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          222 KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ..+..........+.+ .+.++++|+ |+.|++||+.+|+.+
T Consensus       386 ~~~~~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          386 FSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             EEEECTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred             eeecCCCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEE
Confidence            6665544455556666 488899888 899999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.2e-34  Score=248.25  Aligned_cols=248  Identities=12%  Similarity=0.100  Sum_probs=183.9

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC--CcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~--H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      .+.||.++|.+|+|+|  .++++|++||.|++|++||++++........  +...+.+++|++++.++++|+.|++|++|
T Consensus       159 ~~~gH~~~V~~l~f~p--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          159 KGIGAGGSITGLKFNP--LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             CCCSSSCCCCEEEECS--SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EccCCCCCEEEEEEeC--CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            3468999999999997  3678999999999999999987654333333  44567889999999999999999999999


Q ss_pred             eCCCCcEEEEeecCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCCCCCe--EeccCCCCeEEEEEecCCCeEEEEee
Q 024676           89 DALTGDEKHSFEHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      |+..........|...|.+++|+|+++ ++++++.|+.|++||++..+....  ....|...|.+++|+|++. ++++++
T Consensus       237 d~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~  315 (435)
T 4e54_B          237 NMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTD  315 (435)
T ss_dssp             ESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEE
T ss_pred             ccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEc
Confidence            987654333335888999999999875 788899999999999987654322  2245778999999988655 566778


Q ss_pred             CCCeEEEEECCCCceeEEecCCC-------CEEEEEEcCCCcEEEEe-------------CCCcEEEEECCCceeeeEEe
Q 024676          166 DSGGVRLWDARSGKIVQTLETKS-------PVTSAEVSRDGRYITTA-------------DGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~-------------~~~~i~iwd~~~~~~~~~~~  225 (264)
                      .|+.|+|||++++++...+..+.       .+....++|++.+++++             +++.|++||..+++.+..+.
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~  395 (435)
T 4e54_B          316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY  395 (435)
T ss_dssp             SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred             CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            88999999999988766553211       12344566666544432             23579999999998887764


Q ss_pred             cC-C-CCcee-eEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          226 MP-C-NTESA-SLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       226 ~~-~-~~~~~-~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+ . ...+. .|+| ++.+|++|+ |+.|+|||+.+|+..
T Consensus       396 ~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          396 DPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC-----
T ss_pred             CCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCeee
Confidence            32 2 23344 4666 588888876 889999999998753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-34  Score=251.08  Aligned_cols=246  Identities=11%  Similarity=0.020  Sum_probs=187.0

Q ss_pred             EeeccCCCeeeeEeccC---CCCCeEEEEEeCCCCcEEEeCCCCce-----------EEeeeCCcCCEEEEEECCCCcEE
Q 024676           11 VCHGHSRPVVDLFYSPI---TPDGFFLVSASKDSSPMLRNGETGDW-----------IGTFEGHKGAVWSCCLDANALFS   76 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~---~~~g~~l~t~s~d~~v~i~~~~~~~~-----------~~~~~~H~~~V~~v~~~~~~~~l   76 (264)
                      .+.+|.+.|..|+|+|.   .+++.+||+++.|++|++|++.+++.           ..++.+|.+.|.+++|++++ .|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence            34678899999999985   24578999999999999999987632           24678999999999999865 78


Q ss_pred             EEecCCCeEEEEeCCCCc-EEEEe-ecCCeEEEE--EECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCC-CCeEE
Q 024676           77 ASGSADFTAKLWDALTGD-EKHSF-EHKHIVRAC--AFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSS-GSIRT  150 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~-~~~~~-~~~~~v~~~--~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-~~i~~  150 (264)
                      ++|+.||+|++||+.++. +...+ .|..+|+++  .++|++ ++|+||+.|+++++||+++++......++.. ..+.+
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~  360 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP  360 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence            999999999999998763 33333 488999999  568887 8999999999999999986554333333222 34778


Q ss_pred             EEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCCc-----e----
Q 024676          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHF-----G----  219 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~-----~----  219 (264)
                      ++|+|++.. +++++.|++|++||+++++++..+. +..+|.+++|+|++++|+ ++.|++|++||+...     +    
T Consensus       361 v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~  439 (524)
T 2j04_B          361 VVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSA  439 (524)
T ss_dssp             EEEETTTTE-EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred             eEeCCCcCe-EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcc
Confidence            999987665 5566777999999999998876654 556899999999998765 467899999986421     0    


Q ss_pred             -----eeeEEec------------------------------C-CCCceeeEcCCC--CCEEEEecCCCeEEEEEcC
Q 024676          220 -----LVKGYNM------------------------------P-CNTESASLEPKL--GNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       220 -----~~~~~~~------------------------------~-~~~~~~~~~~~~--~~~~~~gs~d~~v~vwd~~  258 (264)
                           .+....+                              + ....+.+|+|+.  +..+++|+.||.||||++.
T Consensus       440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence                 0100000                              0 112345677753  4599999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.6e-33  Score=249.98  Aligned_cols=242  Identities=18%  Similarity=0.206  Sum_probs=206.6

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCC-EEEEEECC--CCcEEEEecCCCeE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGA-VWSCCLDA--NALFSASGSADFTA   85 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~-V~~v~~~~--~~~~l~s~s~D~~v   85 (264)
                      ..|.+.|.+++|+|   +|++|++++ ++.+++|+..++    +....+.+|.+. |.+++|+|  ++.++++|+.|++|
T Consensus        15 ~~~~~~v~~~~~sp---dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v   90 (615)
T 1pgu_A           15 STQRNFTTHLSYDP---TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV   90 (615)
T ss_dssp             CCCTTCCCCCEEET---TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             CCccCceeEEEECC---CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence            57999999999996   899999998 889999999998    888999999999 99999999  99999999999999


Q ss_pred             EEEeCCCC--------cEEEEee-cCCeEEEEEECCCCCEEEEeeCC----CcEEEeeCCCCCCCCeEeccCCCCeEEEE
Q 024676           86 KLWDALTG--------DEKHSFE-HKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (264)
Q Consensus        86 ~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~  152 (264)
                      ++||+.++        .....+. |..+|..++|+|++++|++++.+    +.+++||..  + .......|...+.+++
T Consensus        91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~-~~~~~~~~~~~v~~~~  167 (615)
T 1pgu_A           91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N-SLGEVSGHSQRINACH  167 (615)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C-EEEECCSCSSCEEEEE
T ss_pred             EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C-cceeeecCCccEEEEE
Confidence            99999754        4444444 78899999999999999999987    688899842  2 2344556788999999


Q ss_pred             EecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CC---CEEEEEEcCC-CcEEEE-eCCCcEEEEECCCceeeeEE-e
Q 024676          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KS---PVTSAEVSRD-GRYITT-ADGSSVKFWDANHFGLVKGY-N  225 (264)
Q Consensus       153 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~---~v~~~~~s~~-~~~l~~-~~~~~i~iwd~~~~~~~~~~-~  225 (264)
                      |+|++..++++++.|+.|++||+++++.+..+.. ..   ++.+++|+|+ ++++++ +.++.|++||+++++.+..+ .
T Consensus       168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  247 (615)
T 1pgu_A          168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED  247 (615)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred             ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence            9998877788889999999999999999888864 45   7999999999 887765 56899999999999988888 3


Q ss_pred             ---c-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          226 ---M-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       226 ---~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                         . ......+.+.  .+.+|++++.|+.|++||+.+++.+
T Consensus       248 ~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          248 DQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             TTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEE
Confidence               3 3344556666  5899999999999999999988754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=261.83  Aligned_cols=240  Identities=12%  Similarity=0.111  Sum_probs=196.9

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      ..||...|.+|+|+|   +|++||+|+.|++|++|+..+++.+..+ .|.++|.+++|+| +.+|++++.|++|++||+.
T Consensus        13 ~~gh~~~V~~lafsp---dg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDF---TQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEECSSCEEEEEEET---TTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             ccCCCCCcEEEEECC---CCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            369999999999996   8999999999999999999887765554 4889999999999 7899999999999999999


Q ss_pred             CCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC----------eEeccCCCCeEEEEEecCCCeEE
Q 024676           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP----------REVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      +++.+..+.|...|++++|+|+++++++|+.|+.|++||++++....          .....|.+.+.+++|+|.+..++
T Consensus        88 ~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           88 SQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             TCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            99998888888899999999999999999999999999998654310          11234678899999999776778


Q ss_pred             EEeeCCCeEEEEECCCCceeEEecCC-------------------CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceee
Q 024676          162 SSCTDSGGVRLWDARSGKIVQTLETK-------------------SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV  221 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~~~~~~~~~~~-------------------~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~  221 (264)
                      ++++.|+.| +||+++++++..+..+                   ..|.+++|+|+|.+|++ +.|+.|++||+++++++
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            888899999 9999999988877644                   56999999999988765 56899999999998876


Q ss_pred             eEEec-----C-------------C-CCceeeEc----CCCCCEEEEecCCC-----eEEEEEc
Q 024676          222 KGYNM-----P-------------C-NTESASLE----PKLGNIFIAGGEDM-----WVHVFDF  257 (264)
Q Consensus       222 ~~~~~-----~-------------~-~~~~~~~~----~~~~~~~~~gs~d~-----~v~vwd~  257 (264)
                      ....+     +             . ....++|.    |+.+.++++||.|.     .+++|++
T Consensus       247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            54221     1             1 12345564    32236788887763     7889884

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.8e-33  Score=266.53  Aligned_cols=248  Identities=25%  Similarity=0.462  Sum_probs=214.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|.+.|.+++|+|   +|++|++|+.|+.|++|+..+++.+..+.+|.+.|.+++|+|++.++++++.|++|++||
T Consensus       609 ~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQ---DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEecccccEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            45679999999999996   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      +.++..+..+. |...|.+++|+|  +..++++++.|+.|++||+++++.. .....|.+.+.+++|+|++. ++++++.
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~-~~~~~h~~~v~~~~~sp~~~-~l~s~s~  763 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDE-LLASCSA  763 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE-EEECCCSSCEEEEEECSSTT-EEEEEES
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh-heecCCCCCEEEEEEecCCC-EEEEEEC
Confidence            99998888774 888999999999  5668999999999999999877543 34456888999999998665 5667788


Q ss_pred             CCeEEEEECCCCceeEEecCC--------------CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec--CCCC
Q 024676          167 SGGVRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCNT  230 (264)
Q Consensus       167 d~~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~--~~~~  230 (264)
                      |+.|++||+++++....+...              ..+.+++|+|+|.+++++.++.+.+||+.+...+..+..  ....
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            899999999998876655321              257788999999998887789999999999888777753  3345


Q ss_pred             ceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ....+.| .+.++++++.|+.|++||+.+++.+
T Consensus       844 ~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~  875 (1249)
T 3sfz_A          844 QYCDFSP-YDHLAVIALSQYCVELWNIDSRLKV  875 (1249)
T ss_dssp             CEEEECS-STTEEEEECSSSCEEEEETTTTEEE
T ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEEcCCCcee
Confidence            5667777 5899999999999999999987754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-32  Score=234.52  Aligned_cols=240  Identities=17%  Similarity=0.220  Sum_probs=200.7

Q ss_pred             ccCCCee--eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-CcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           14 GHSRPVV--DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        14 ~h~~~v~--~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      +|...+.  ++.|++     ..+++++.|+.|++|+..+++....+.. |.+.|.+++|+|++.++++|+.|+.|++||+
T Consensus        89 ~~~~~~~~~~~~~s~-----~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN-----LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             TCCCCTTCBCEEECT-----TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCcCCceEEEEeecC-----CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence            6666544  466653     3578899999999999999998877765 8999999999999999999999999999999


Q ss_pred             CCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        91 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      .+++.+..+ .|...|.++.|  +++++++++.|+.|++||++...........|.+.+.+++|++++ .++++++.|+.
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~  240 (401)
T 4aez_A          164 ESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNV  240 (401)
T ss_dssp             TTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             cCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCe
Confidence            999887777 47889999999  457999999999999999986555455666788999999999854 56777788899


Q ss_pred             EEEEECCCCceeEEec-CCCCEEEEEEcCCC-cEEEEe---CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEE
Q 024676          170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRDG-RYITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI  244 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (264)
                      |++||+++++.+..+. +..++.+++|+|++ .+++++   .++.|++||+++++.+..+..+.....+.+.++ +.+++
T Consensus       241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~  319 (401)
T 4aez_A          241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH-SKEIM  319 (401)
T ss_dssp             EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSS-SSEEE
T ss_pred             EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCC-CCeEE
Confidence            9999999999887775 55679999999976 556654   389999999999999998887777778888885 77777


Q ss_pred             E--ecCCCeEEEEEcCccee
Q 024676          245 A--GGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       245 ~--gs~d~~v~vwd~~~g~~  262 (264)
                      +  |+.|+.|++||+.+++.
T Consensus       320 ~~~g~~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          320 STHGFPDNNLSIWSYSSSGL  339 (401)
T ss_dssp             EEECTTTCEEEEEEEETTEE
T ss_pred             EEeecCCCcEEEEecCCccc
Confidence            7  55899999999987654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.4e-33  Score=237.99  Aligned_cols=241  Identities=10%  Similarity=0.097  Sum_probs=181.9

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEE-----------eCCCCcEEEeCCCCce-E---Ee-----eeCCcCCEEEEEEC
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSA-----------SKDSSPMLRNGETGDW-I---GT-----FEGHKGAVWSCCLD   70 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~-----------s~d~~v~i~~~~~~~~-~---~~-----~~~H~~~V~~v~~~   70 (264)
                      .+.+|...|.++++++     +.+++|           +.|+.+|+|+..+... +   ..     ...+...+++++|+
T Consensus        68 ~l~~~~~~v~s~~~~~-----~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS  142 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASK-----GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS  142 (365)
T ss_dssp             ECCTTSCCCCEEEEET-----TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred             EccCCCCceEEEEeCC-----CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence            3467888888887753     455554           5678899998765431 1   11     12355679999999


Q ss_pred             CCCcEEE--EecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccCCCC
Q 024676           71 ANALFSA--SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGS  147 (264)
Q Consensus        71 ~~~~~l~--s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~  147 (264)
                      ||+++++  +++.|++|||||+.+++.+..+.|...|.+++|+|+++++++++.++ +.+|+..+++.... ....+...
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEE
T ss_pred             CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCC
Confidence            9999865  56689999999999999999999999999999999999999988655 55566555543322 22346678


Q ss_pred             eEEEEEecCCCeEEEEeeCCC----eEEEEECCCCcee----EEe-cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCC
Q 024676          148 IRTVAWLHSDQTILSSCTDSG----GVRLWDARSGKIV----QTL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH  217 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d~----~v~iwd~~~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~  217 (264)
                      +.+++|+|++..++++ +.|+    .+++||+......    ..+ .+..+|.+++|+|+|++|++ +.|++|+|||+++
T Consensus       222 v~~v~fspdg~~l~~~-s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          222 LSKINFIADDTVLIAA-SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEEEEEEETTEEEEEE-EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             EEEEEEcCCCCEEEEE-ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence            9999999877655544 4444    6889998876532    223 34567999999999999876 5689999999999


Q ss_pred             ceeeeEE-ecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          218 FGLVKGY-NMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       218 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ++++..+ ..+. .+.+++|+| ++++|++||.|++|||||+.+
T Consensus       301 ~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          301 LSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred             CcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence            9998887 3444 355677887 599999999999999999853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=242.33  Aligned_cols=241  Identities=13%  Similarity=0.110  Sum_probs=189.2

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC---CCceEEeeeC------------CcCCEEEEE--ECCCCc
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE---TGDWIGTFEG------------HKGAVWSCC--LDANAL   74 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~---~~~~~~~~~~------------H~~~V~~v~--~~~~~~   74 (264)
                      ..+|..+|.+|+|+|   ++++|++|+.|+.|++|+++   +++.+..+.+            +...+.++.  +++++.
T Consensus       107 ~~~h~~~v~~~~~~~---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (437)
T 3gre_A          107 TYDCSSTVTQITMIP---NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS  183 (437)
T ss_dssp             EEECSSCEEEEEECT---TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred             eccCCCCEEEEEEeC---CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence            346999999999996   88999999999999999984   5655544433            344555555  557899


Q ss_pred             EEEEecCCCeEEEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE
Q 024676           75 FSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~  151 (264)
                      ++++|+.|++|++||+.+++.+..+.   |...|++++|+|++++|++|+.|+.|++||++.++........+...+.++
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV  263 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence            99999999999999999998888775   678999999999999999999999999999987554333223566789999


Q ss_pred             EEec---CCCeEEEEeeCCCeEEEEECCCCceeEEecC---------------------------CCCEEEEEEcCCCcE
Q 024676          152 AWLH---SDQTILSSCTDSGGVRLWDARSGKIVQTLET---------------------------KSPVTSAEVSRDGRY  201 (264)
Q Consensus       152 ~~~~---~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---------------------------~~~v~~~~~s~~~~~  201 (264)
                      +|.|   +++.++++++.|+.|++||+++++++..+..                           ...|.+++++ ++.+
T Consensus       264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~  342 (437)
T 3gre_A          264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI  342 (437)
T ss_dssp             EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred             EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence            8775   3556888889999999999999998776652                           2347888999 6666


Q ss_pred             EEE-eCCCcEEEEECCCceeeeEEec--------------------------------------CCCCceeeEcCC-CCC
Q 024676          202 ITT-ADGSSVKFWDANHFGLVKGYNM--------------------------------------PCNTESASLEPK-LGN  241 (264)
Q Consensus       202 l~~-~~~~~i~iwd~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~-~~~  241 (264)
                      |++ +.|+.|++||+++++....+..                                      ......+.+.+. .+.
T Consensus       343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~  422 (437)
T 3gre_A          343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP  422 (437)
T ss_dssp             EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE
T ss_pred             EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce
Confidence            555 5689999999998876665543                                      122334455543 367


Q ss_pred             EEEEecCCCeEEEEE
Q 024676          242 IFIAGGEDMWVHVFD  256 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd  256 (264)
                      +|++|+.||.|++|+
T Consensus       423 ~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          423 LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEETTSCEEEEC
T ss_pred             EEEEEcCCceEEEeC
Confidence            999999999999995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.2e-33  Score=238.32  Aligned_cols=238  Identities=19%  Similarity=0.302  Sum_probs=188.9

Q ss_pred             CeeeeEeccCCCCC-eEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeCC
Q 024676           18 PVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        18 ~v~~~~~~~~~~~g-~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~~   91 (264)
                      ....++++|   +. .++++++.||.|++|+..+.    ..+..+.+|.+.|.+++|+| ++.++++|+.|++|++||+.
T Consensus        36 ~~~~~~~~~---~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNP---KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECS---SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECC---CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            344577775   44 34556899999999998654    23456789999999999999 89999999999999999998


Q ss_pred             CC-------cEEEEe-ecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeEe--ccCCCCeEEEEEecCCCeE
Q 024676           92 TG-------DEKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        92 ~~-------~~~~~~-~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~  160 (264)
                      ++       .....+ .|...|.+++|+|++ ++|++++.|+.|++||+++++.. ..+  ..|...+.+++|+|++. +
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~  190 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV-LTLGPDVHPDTIYSVDWSRDGA-L  190 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE-EEECTTTCCSCEEEEEECTTSS-C
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc-EEEecCCCCCceEEEEECCCCC-E
Confidence            87       444444 488999999999998 69999999999999999876543 333  56788999999998655 5


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEe-cCC-C-CEEEEEEcCCCcEEEEe----CCCcEEEEECCCcee-eeEEe--cCCCC
Q 024676          161 LSSCTDSGGVRLWDARSGKIVQTL-ETK-S-PVTSAEVSRDGRYITTA----DGSSVKFWDANHFGL-VKGYN--MPCNT  230 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~~~~~-~~~-~-~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~~~~-~~~~~--~~~~~  230 (264)
                      +++++.|+.|++||+++++.+..+ ..+ . .+..+.|+|++++++++    .++.|++||+++.+. +....  .....
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  270 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV  270 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred             EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence            666778899999999999988877 333 3 37899999999998876    578999999998654 33333  33445


Q ss_pred             ceeeEcCCCCCEE-EEecCCCeEEEEEcCcce
Q 024676          231 ESASLEPKLGNIF-IAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       231 ~~~~~~~~~~~~~-~~gs~d~~v~vwd~~~g~  261 (264)
                      ....+.++ +.++ ++|+.|+.|++||+.+++
T Consensus       271 ~~~~~s~~-~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          271 LLPFFDPD-TNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEEEETT-TTEEEEEETTCSCEEEEEECSST
T ss_pred             eEEEEcCC-CCEEEEEEcCCCeEEEEEecCCC
Confidence            66777875 5656 567789999999998876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7e-34  Score=241.00  Aligned_cols=221  Identities=23%  Similarity=0.383  Sum_probs=183.5

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEe
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTG  120 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~  120 (264)
                      .+..|+..+....++|.+|.+.|.+++|+|++.+++||+.|++|+|||..++.....+. |...|..++|+|++++|++|
T Consensus        47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred             cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence            44567777777888999999999999999999999999999999999999998777765 77889999999999999999


Q ss_pred             eCCCcEEEeeCCCCCC------CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec------CCC
Q 024676          121 GFEKILRIFDLNRPDA------PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE------TKS  188 (264)
Q Consensus       121 ~~d~~i~~~d~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~------~~~  188 (264)
                      +.|+.+++||+.+...      ....+..|.+.+.++.|.|+++..+++++.|++|++||+++++++..+.      +..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence            9999999999864321      1233456788888899998877778888999999999999999887662      345


Q ss_pred             CEEEEEEcC-CCcEEE-EeCCCcEEEEECCC-ceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          189 PVTSAEVSR-DGRYIT-TADGSSVKFWDANH-FGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       189 ~v~~~~~s~-~~~~l~-~~~~~~i~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+.++.++| ++.+++ ++.|+.|++||++. ...+..+..+. ....+.+.| ++.+|++||.|++|++||+.+|+.+
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEE
Confidence            799999987 676665 56689999999984 46677776544 456777887 5899999999999999999988754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.1e-32  Score=226.17  Aligned_cols=207  Identities=19%  Similarity=0.248  Sum_probs=169.1

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCC--CcEEEEecCCCe
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN--ALFSASGSADFT   84 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~   84 (264)
                      ...+.||+++|.+|+|+|. .+|++|++|+.|++|++||.++++  .+..+.+|...|.+++|+|+  +.++++|+.|++
T Consensus        46 ~~~l~gH~~~V~~v~~s~~-~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~  124 (297)
T 2pm7_B           46 IDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK  124 (297)
T ss_dssp             CEEECCCSSCEEEEEECCG-GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             EEEEccccCCeEEEEecCC-CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence            4566899999999999852 147899999999999999998874  45678899999999999997  789999999999


Q ss_pred             EEEEeCCCCc---EEEEeecCCeEEEEEECCC-------------CCEEEEeeCCCcEEEeeCCCCCCC---CeEeccCC
Q 024676           85 AKLWDALTGD---EKHSFEHKHIVRACAFSED-------------THLLLTGGFEKILRIFDLNRPDAP---PREVGNSS  145 (264)
Q Consensus        85 v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~-------------~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~  145 (264)
                      |++||+.++.   ......|...|..++|+|+             +++|++|+.|++|++||++++...   ...+..|.
T Consensus       125 v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~  204 (297)
T 2pm7_B          125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  204 (297)
T ss_dssp             EEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             EEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC
Confidence            9999998753   2233358889999999997             579999999999999999765421   23445688


Q ss_pred             CCeEEEEEecCC--CeEEEEeeCCCeEEEEECCCCc--e-eEEe---cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECC
Q 024676          146 GSIRTVAWLHSD--QTILSSCTDSGGVRLWDARSGK--I-VQTL---ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDAN  216 (264)
Q Consensus       146 ~~i~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~--~-~~~~---~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~  216 (264)
                      ..+.+++|+|++  +.++++++.|++|+|||+++++  . ...+   .+...+.+++|+|++++|++ +.|+.|++|+..
T Consensus       205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            899999999875  5788899999999999998753  1 1222   23467999999999987765 568999999976

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.2e-32  Score=233.82  Aligned_cols=233  Identities=18%  Similarity=0.315  Sum_probs=193.9

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      .+|..+|.++.|     ++++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|  ++.++++|+.|++|++||+.+
T Consensus       130 ~~~~~~v~~~~~-----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          130 SETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             CSSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             cCCCCcEEEEEE-----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            367788998876     5789999999999999999999999999999999999998  688999999999999999999


Q ss_pred             CcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC--eEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      ++.+..+. |...|.++.+++  ..+++|+.|+.|++||+++++...  .....+...+.++++   ++.++++++.|+.
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~  277 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRT  277 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSE
T ss_pred             CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCe
Confidence            98877775 778899999874  589999999999999998765442  344567889999988   2346777888899


Q ss_pred             EEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCc-eeeEcCCCCCEEEEec
Q 024676          170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGG  247 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs  247 (264)
                      |++||+++++.+..+.. ...+.++.+++ ..+++++.|+.|++||+++++++..+..+.... .+.+   ++.+|++|+
T Consensus       278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~  353 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGA  353 (435)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEE
T ss_pred             EEEEECCcCcEEEEEcCCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEe
Confidence            99999999999888864 46788888853 234456678999999999999988887654433 3333   478999999


Q ss_pred             CCCeEEEEEcCcce
Q 024676          248 EDMWVHVFDFHTGE  261 (264)
Q Consensus       248 ~d~~v~vwd~~~g~  261 (264)
                      .|+.|++||+.+++
T Consensus       354 ~dg~i~vwd~~~~~  367 (435)
T 1p22_A          354 YDGKIKVWDLVAAL  367 (435)
T ss_dssp             TTSCEEEEEHHHHT
T ss_pred             CCCcEEEEECCCCC
Confidence            99999999987654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-33  Score=234.38  Aligned_cols=226  Identities=10%  Similarity=0.054  Sum_probs=179.4

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC---------CCcEEEEe
Q 024676           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL---------TGDEKHSF   99 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~---------~~~~~~~~   99 (264)
                      +++++|++|+.|+.|++||..+++.+..+.  ...|.++.++|+   +++++.|++|++|+..         ++..+...
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~  120 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI  120 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence            578899999999999999999998887776  567888888888   8999999999999765         44434443


Q ss_pred             --ecCCeEEEEEECC--CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676          100 --EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus       100 --~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                        .|..+|.+++++|  +++++++++.|+.+++||+++++........+...+.+++|.|++ .++++++.|+.|++||+
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNL  199 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEES
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEEC
Confidence              3557899999999  999999999999999999987765322334456679999998855 56777888899999999


Q ss_pred             CCCcee-EEecC--CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec---CCC---CceeeEcCCCCCEEEEe
Q 024676          176 RSGKIV-QTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM---PCN---TESASLEPKLGNIFIAG  246 (264)
Q Consensus       176 ~~~~~~-~~~~~--~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~g  246 (264)
                      ++++.+ ..+..  ..+|.+++|+|++.+|+++.++.|++||+++.+.+..+..   +..   ...+++.| .+++|+++
T Consensus       200 ~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~  278 (343)
T 3lrv_A          200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAY  278 (343)
T ss_dssp             SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEE
T ss_pred             CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEe
Confidence            999877 66654  6789999999999988776666999999998876544331   111   12477777 58899998


Q ss_pred             cC-CCeEEEEEcCcce
Q 024676          247 GE-DMWVHVFDFHTGE  261 (264)
Q Consensus       247 s~-d~~v~vwd~~~g~  261 (264)
                      +. |+.+++|++.++.
T Consensus       279 s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          279 SNESNSLTIYKFDKKT  294 (343)
T ss_dssp             ETTTTEEEEEEECTTT
T ss_pred             cCCCCcEEEEEEcccc
Confidence            88 9999999986553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.3e-32  Score=242.09  Aligned_cols=250  Identities=13%  Similarity=0.189  Sum_probs=205.9

Q ss_pred             ecceEeeccCCC-eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC--------ceEEeeeCCcCCEEEEEECCCCcEEE
Q 024676            7 AVPLVCHGHSRP-VVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--------DWIGTFEGHKGAVWSCCLDANALFSA   77 (264)
Q Consensus         7 ~~~~~~~~h~~~-v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~--------~~~~~~~~H~~~V~~v~~~~~~~~l~   77 (264)
                      .....+.+|..+ |.+++|+|. .++++|++|+.|+.|++|+..++        +.+..+.+|..+|.+++|+|++.+++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPI-KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSS-TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcC-CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence            355667899999 999999942 17889999999999999999755        56778899999999999999999999


Q ss_pred             EecCC----CeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCCCCCeEeccCCC---Ce
Q 024676           78 SGSAD----FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSG---SI  148 (264)
Q Consensus        78 s~s~D----~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~---~i  148 (264)
                      +++.|    +.|++||  .+.....+ .|...|.+++|+|+++ ++++++.|+.+++||+++++.. ..+..+..   .+
T Consensus       133 ~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~v  209 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFV  209 (615)
T ss_dssp             EEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-EEECSSSCTTCCE
T ss_pred             EeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee-eeecccCCCCceE
Confidence            99988    7999999  44455554 4788999999999997 8999999999999998765533 33445667   89


Q ss_pred             EEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe-----cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeee
Q 024676          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-----ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK  222 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~  222 (264)
                      .+++|+|+++.++++++.|+.|++||+++++.+..+     .+..++.++.|+ ++.++++ +.++.|++||+++++.+.
T Consensus       210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~  288 (615)
T 1pgu_A          210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ  288 (615)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            999999873556777788899999999999999888     566789999999 8877655 568999999999999988


Q ss_pred             EEecCC-----CCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          223 GYNMPC-----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       223 ~~~~~~-----~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+..+.     ......+ + .+.++++|+.|+.|++||+.+++.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          289 KWTLDKQQLGNQQVGVVA-T-GNGRIISLSLDGTLNFYELGHDEVL  332 (615)
T ss_dssp             EEECCTTCGGGCEEEEEE-E-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred             EEcCCCCcccCceeEEEe-C-CCCeEEEEECCCCEEEEECCCCcEE
Confidence            887652     2223333 3 5889999999999999999887654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-31  Score=230.69  Aligned_cols=241  Identities=27%  Similarity=0.423  Sum_probs=198.0

Q ss_pred             eecceEeeccCCCe-eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCe
Q 024676            6 VAVPLVCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (264)
Q Consensus         6 ~~~~~~~~~h~~~v-~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~   84 (264)
                      +..+..+.||.+.| .++.+     +|++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|+  +.++++|+.|++
T Consensus       108 ~~~~~~l~~h~~~v~~~~~~-----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCLQF-----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             CCCCEEEECSTTSCEEEEEE-----ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             cceeEEecccCCCcEEEEEE-----cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            34566788999975 55544     57899999999999999999999999999999999999997  568999999999


Q ss_pred             EEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           85 AKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        85 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      |++||+.+++....+. |...|.++.++  ++.+++|+.|+.+++||+++++.. .....+...+.++++   ++.++++
T Consensus       181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~---~~~~l~~  254 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL-HVLMGHVAAVRCVQY---DGRRVVS  254 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE-EEEECCSSCEEEEEE---CSSCEEE
T ss_pred             EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE-EEEcCCcccEEEEEE---CCCEEEE
Confidence            9999999998877775 78899999885  567999999999999999876543 344567888999987   3345677


Q ss_pred             eeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCC
Q 024676          164 CTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (264)
                      ++.|+.|++||+++++++..+.. ..++.++.+  ++.++ +++.|+.|++||+++++.+..+..+..... .+.+ .+.
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~-~~~  330 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMEL-KDN  330 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEE-ETT
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE-EEEE-eCC
Confidence            78889999999999999888864 467999988  56555 456789999999999998888865544322 2333 377


Q ss_pred             EEEEecCCCeEEEEEcCcceee
Q 024676          242 IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++++|+.|+.|++||+.+++.+
T Consensus       331 ~l~~~~~dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          331 ILVSGNADSTVKIWDIKTGQCL  352 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEE
Confidence            9999999999999999888754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.9e-32  Score=248.62  Aligned_cols=249  Identities=20%  Similarity=0.319  Sum_probs=207.7

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ...+.+|..+|.+++|+|   +|++|++|+.|+.|++|+..+++.+..+.+|.+.|.+++|+|++.++++++.|++|++|
T Consensus        48 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw  124 (814)
T 3mkq_A           48 VRSIQVTETPVRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW  124 (814)
T ss_dssp             EEEEECCSSCEEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             EEEEecCCCcEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence            345568999999999997   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCC-cEEEEe-ecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecC-CCeEEEEe
Q 024676           89 DALTG-DEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSC  164 (264)
Q Consensus        89 d~~~~-~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~  164 (264)
                      |+.++ .....+ .|..+|.+++|+| +++.+++++.|+.|++||++.+.........+...+..++|.|. ++.+++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             EGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred             ECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence            99887 444444 4788999999999 88899999999999999998776655555555578999999872 34467777


Q ss_pred             eCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC-CCceeeEcCCCCC
Q 024676          165 TDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGN  241 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~  241 (264)
                      +.|+.|++||+++++++..+. +..++.+++|+|++.++++ +.|+.|++||+.+++.+..+..+. ....+.+.|+...
T Consensus       205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  284 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (814)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence            888999999999999888776 4567999999999987665 568999999999998888887654 4456677776444


Q ss_pred             EEEEecCCCeEEEEEcCcc
Q 024676          242 IFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g  260 (264)
                      .+++.+.|+.+.+|++..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          285 NYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             GEEEEEETTEEEEEECSCC
T ss_pred             eEEEEEeCCCEEEEEcCCC
Confidence            4455555777999987654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.9e-31  Score=222.53  Aligned_cols=245  Identities=14%  Similarity=0.125  Sum_probs=202.9

Q ss_pred             eeccCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEe
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWD   89 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd   89 (264)
                      +.+|. .+.+++|+|   +|++| ++++.|+.+++||..+++.+..+..|. .+.+++|+|++.++ ++++.|+.|++||
T Consensus        28 ~~~~~-~~~~~~~s~---dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           28 IPVGS-NPMGAVISP---DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID  102 (391)
T ss_dssp             EECSS-SEEEEEECT---TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eecCC-CcceEEECC---CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence            34554 478999996   88766 788899999999999999988888665 89999999999876 5677789999999


Q ss_pred             CCCCcEEEEeecCCeEEEEEECCCCCEE-EEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      +.+++.+..+.+...+..++|+|+++.+ ++++.|+.|++||+++++.... . .....+..++|.+++..+++++..++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~-~~~~~~~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-V-SVGRSPKGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-E-ECCSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-E-ecCCCcceEEECCCCCEEEEEeCCCC
Confidence            9999988888877889999999999977 6778899999999987654322 2 22346788999998888777888889


Q ss_pred             eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-e---CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEE
Q 024676          169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI  244 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (264)
                      .|++||+++++++..+.....+.+++++|++++++. +   .++.|++||+++++.+..+..+..+..+.+.++...+++
T Consensus       181 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  260 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYV  260 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEE
Confidence            999999999998888877778999999999987654 3   468999999999998888877666667788885334557


Q ss_pred             EecCCCeEEEEEcCcceee
Q 024676          245 AGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       245 ~gs~d~~v~vwd~~~g~~i  263 (264)
                      +++.|+.|++||+.+++.+
T Consensus       261 s~~~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          261 ALSFXNTVSVIDTATNTIT  279 (391)
T ss_dssp             EETTTTEEEEEETTTTEEE
T ss_pred             EcCCCCEEEEEECCCCcEE
Confidence            8899999999999988764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.6e-32  Score=233.99  Aligned_cols=242  Identities=14%  Similarity=0.179  Sum_probs=186.1

Q ss_pred             cceEeeccC------------CCeeeeEeccCCCCC--eEEEEEeCCCCcEEEeCCCCceE-------------------
Q 024676            8 VPLVCHGHS------------RPVVDLFYSPITPDG--FFLVSASKDSSPMLRNGETGDWI-------------------   54 (264)
Q Consensus         8 ~~~~~~~h~------------~~v~~~~~~~~~~~g--~~l~t~s~d~~v~i~~~~~~~~~-------------------   54 (264)
                      ....+.+|.            .+|.+|+|+|   ++  .+|++++.|+.|++|++.+++..                   
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~---~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~  149 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLP---QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV  149 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECC---CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC
T ss_pred             EecccccccccccccccccccCceEEEEEcC---CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc
Confidence            344567898            8899999997   55  78999999999999998764321                   


Q ss_pred             --------------------Ee-eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC-CcEEEEe--------ecCCe
Q 024676           55 --------------------GT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDEKHSF--------EHKHI  104 (264)
Q Consensus        55 --------------------~~-~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~--------~~~~~  104 (264)
                                          +. +.+|...|.+++|+|++.++++| .|++|++||+.+ +.....+        .|...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (447)
T 3dw8_B          150 TTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEV  228 (447)
T ss_dssp             CSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCC
T ss_pred             cceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcc
Confidence                                12 36899999999999999999998 799999999984 3344432        47788


Q ss_pred             EEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCC---CeEeccCCC------------CeEEEEEecCCCeEEEEeeCCC
Q 024676          105 VRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAP---PREVGNSSG------------SIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus       105 v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~~------------~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      |.+++|+|++ ++|++|+.|+.|++||+++++..   ...+..+..            .+.+++|+|++. +++++++ +
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~  306 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-L  306 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-S
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-C
Confidence            9999999998 99999999999999999876641   244444443            899999998655 5666777 9


Q ss_pred             eEEEEECCC-CceeEEecCCCC----------------EEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEE------
Q 024676          169 GVRLWDARS-GKIVQTLETKSP----------------VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGY------  224 (264)
Q Consensus       169 ~v~iwd~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~------  224 (264)
                      .|++||+++ ++++..+..+..                +..++|+|++++|++ +.|+.|++||+++++.+...      
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  386 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENN  386 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTC
T ss_pred             eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccc
Confidence            999999997 777766655433                234899999988766 45899999999988765311      


Q ss_pred             ---------------------------ecCCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          225 ---------------------------NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       225 ---------------------------~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                                                 .+.......+++|. +.+|++++.|+ +++|..
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~-~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          387 KPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPK-ENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSS-SSEEEEECSSC-EEEEEC
T ss_pred             ccccccCCccccccCCcccccccccccccCCceeEEEECCC-CCEEEEEecce-eeeecc
Confidence                                       11223345678884 88999998876 788864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.9e-32  Score=231.51  Aligned_cols=237  Identities=18%  Similarity=0.300  Sum_probs=189.4

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      ....+.+|..+|.++.|     ++++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|++  .++++|+.|++|++
T Consensus       165 ~~~~~~~h~~~v~~l~~-----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v  237 (435)
T 1p22_A          165 CKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAV  237 (435)
T ss_dssp             EEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEE
T ss_pred             EEEEEcCCCCcEEEEEE-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEE
Confidence            34556799999999988     467999999999999999999999999999999999999974  58899999999999


Q ss_pred             EeCCCCcEE---E-EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           88 WDALTGDEK---H-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        88 wd~~~~~~~---~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      ||+.++...   . ...|...|.++.+  +++++++|+.|+.|++||+++++.. .....+...+.++++.   +.++++
T Consensus       238 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~---~~~l~~  311 (435)
T 1p22_A          238 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV-RTLNGHKRGIACLQYR---DRLVVS  311 (435)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEE---TTEEEE
T ss_pred             EeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE-EEEcCCCCcEEEEEeC---CCEEEE
Confidence            999887643   2 2347889999988  6789999999999999999877543 3445677889988874   346777


Q ss_pred             eeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEE-EeCCCcEEEEECCCce---------eeeEEecCCC-Cc
Q 024676          164 CTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFG---------LVKGYNMPCN-TE  231 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~---------~~~~~~~~~~-~~  231 (264)
                      ++.|+.|++||+++++++..+.. ..++.++.+  ++.+++ ++.|+.|++||+++..         ++..+..+.. ..
T Consensus       312 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~  389 (435)
T 1p22_A          312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF  389 (435)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC
T ss_pred             EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeE
Confidence            88889999999999999888874 467998888  555654 5678999999997765         6666655433 44


Q ss_pred             eeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .+.+   ++.+|++|+.|+.|++||+.++++
T Consensus       390 ~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          390 RLQF---DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             CEEE---CSSCEEECCSSSEEEEEC------
T ss_pred             EEEe---CCCEEEEEeCCCEEEEEECCCCCC
Confidence            4555   477899999999999999977654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.9e-31  Score=227.13  Aligned_cols=237  Identities=24%  Similarity=0.388  Sum_probs=195.0

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|..+|.++.|+     +++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|+  +..+++|+.|++|++||
T Consensus       153 ~~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          153 RTLVGHTGGVWSSQMR-----DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD  225 (445)
T ss_dssp             EECCCCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCCEEEEEec-----CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEE
Confidence            4457999999999997     3589999999999999999999999999999999999995  56789999999999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      +.+++....+. |..+|.++.+  +++++++++.|+.|++||+++++.. .....+...+.++++   ++..+++++.|+
T Consensus       226 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~---~~~~l~~~~~d~  299 (445)
T 2ovr_B          226 IETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQF---DGIHVVSGSLDT  299 (445)
T ss_dssp             SSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE-EEECCCSSCEEEEEE---CSSEEEEEETTS
T ss_pred             CCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe-EEecCCCCceEEEEE---CCCEEEEEeCCC
Confidence            99998777764 7889999988  6788999999999999999876533 344457788999887   344677778889


Q ss_pred             eEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC----CCCceeeEcCCCCCEE
Q 024676          169 GVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP----CNTESASLEPKLGNIF  243 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  243 (264)
                      .|++||+++++++..+..+ ..+.++.++++ .+++++.|+.|++||+++++.+..+..+    .....+.+   .+.++
T Consensus       300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l  375 (445)
T 2ovr_B          300 SIRVWDVETGNCIHTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFV  375 (445)
T ss_dssp             CEEEEETTTCCEEEEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE---CSSEE
T ss_pred             eEEEEECCCCCEEEEEcCCcccEEEEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE---CCCEE
Confidence            9999999999998888654 45777776432 3445567899999999999988888752    12233444   36899


Q ss_pred             EEecCCCeEEEEEcCcceee
Q 024676          244 IAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++|+.|+.|++||+.+|+.+
T Consensus       376 ~s~~~dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          376 ITSSDDGTVKLWDLKTGEFI  395 (445)
T ss_dssp             EEEETTSEEEEEETTTCCEE
T ss_pred             EEEeCCCeEEEEECCCCcee
Confidence            99999999999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-31  Score=228.26  Aligned_cols=239  Identities=10%  Similarity=0.068  Sum_probs=192.1

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---eEEeeeC---------------------------------
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEG---------------------------------   59 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---~~~~~~~---------------------------------   59 (264)
                      ..|+.+|+|+|   +|++|+++ .++.|++|+..+|+   .+..+..                                 
T Consensus         4 ~~p~~~v~~s~---dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            4 IHPLQNLLTSR---DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             ECCCCEEEECS---SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             cccEEEEEecC---CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            46789999996   88876655 57899999999998   6555543                                 


Q ss_pred             ---------------------CcCCEEEEEECCCCcEE-EEecCCCeEEEEeCC--CCcEEEEe---ecCCeEEEEEECC
Q 024676           60 ---------------------HKGAVWSCCLDANALFS-ASGSADFTAKLWDAL--TGDEKHSF---EHKHIVRACAFSE  112 (264)
Q Consensus        60 ---------------------H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~--~~~~~~~~---~~~~~v~~~~~~~  112 (264)
                                           |.+.|.+++|+|++.+| ++|+.|++|++||+.  ++..+..+   .+...|.+++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                                 44479999999999996 999999999999998  77766665   4678899999999


Q ss_pred             CCCEEEEeeCCCcEEEeeCCCCCCCC---eEeccCCCCeEEEEEecC--CCeEEEEeeCCCeEEEEECCCCceeEEe--c
Q 024676          113 DTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARSGKIVQTL--E  185 (264)
Q Consensus       113 ~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~~~--~~~~~~~~~~d~~v~iwd~~~~~~~~~~--~  185 (264)
                      ++++|++++.++.+++|++..+....   .....|.+.+.+++|+|+  ++.++++++.|+.|++||+++++++..+  .
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            99999999999999999997765432   133457789999999986  2556778888899999999999888764  3


Q ss_pred             CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecC--------------------------CCCceeeEcCC
Q 024676          186 TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--------------------------CNTESASLEPK  238 (264)
Q Consensus       186 ~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~--------------------------~~~~~~~~~~~  238 (264)
                      +..+|.+++|+ ++++|++ +.|+.|++||+++++++..+..+                          .....+.+.+ 
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-  317 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-  317 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-
Confidence            55789999999 9987765 56899999999999888877632                          1223456666 


Q ss_pred             CCCEEEEec-CCCeEEEEEc--Ccc
Q 024676          239 LGNIFIAGG-EDMWVHVFDF--HTG  260 (264)
Q Consensus       239 ~~~~~~~gs-~d~~v~vwd~--~~g  260 (264)
                      +++++++++ .|+.|++|++  .++
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSST
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCC
Confidence            478888887 8999999999  544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.7e-31  Score=221.89  Aligned_cols=233  Identities=13%  Similarity=0.071  Sum_probs=192.1

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeC-CCCceEEeeeC--CcCCEEEEEECCCCcEEEEecCCCe
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNG-ETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFT   84 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~-~~~~~~~~~~~--H~~~V~~v~~~~~~~~l~s~s~D~~   84 (264)
                      +....+|..+|.+++|+|   +++ +|++|+.|+.|++|+. .+++. ..+.+  |.+.|.+++|++ +.++++++.|+.
T Consensus        49 ~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~  123 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFID---NTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGL  123 (342)
T ss_dssp             EEEEEECSSCEEEEEEEE---SSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSE
T ss_pred             ceeeeecCCceEEEEECC---CCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCe
Confidence            445568999999999997   789 9999999999999999 87765 67888  999999999999 999999999999


Q ss_pred             EEEEeCCC---------CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC-CCCCC-eEeccCCCCeEEEEE
Q 024676           85 AKLWDALT---------GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPP-REVGNSSGSIRTVAW  153 (264)
Q Consensus        85 v~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~-~~~~~-~~~~~~~~~i~~~~~  153 (264)
                      |++||+.+         ++.+..+.|...+.+++|+|++  +++++.|+.+++||++. +.... .....+...+.+++|
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             EEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             EEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence            99999887         6666667788899999999987  88999999999999987 54433 234456778999999


Q ss_pred             ec-CCCeEEEEeeCCCeEEEEECCCC------ceeEEecCC----------CCEEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676          154 LH-SDQTILSSCTDSGGVRLWDARSG------KIVQTLETK----------SPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (264)
Q Consensus       154 ~~-~~~~~~~~~~~d~~v~iwd~~~~------~~~~~~~~~----------~~v~~~~~s~~~~~l~~-~~~~~i~iwd~  215 (264)
                      +| ++. ++++++.|+.|++||++..      +....+..+          .++.+++|+|++++|++ +.++.|++||+
T Consensus       202 ~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          202 LPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             CCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            88 655 5666778899999999887      666666543          28999999999987655 56899999999


Q ss_pred             CCceeeeEEecC-CCCceeeEcCCCCCEEEEecCCCe
Q 024676          216 NHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMW  251 (264)
Q Consensus       216 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~  251 (264)
                      ++++.+..+..+ ........ + ++.+|++||.|++
T Consensus       281 ~~~~~~~~~~~~h~~~v~~~~-~-~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          281 QTRKKIKNFAKFNEDSVVKIA-C-SDNILCLATSDDT  315 (342)
T ss_dssp             TTTEEEEECCCCSSSEEEEEE-E-CSSEEEEEEECTH
T ss_pred             ccHhHhhhhhcccCCCceEec-C-CCCeEEEEecCCc
Confidence            999988887654 43332222 4 6899999999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.2e-30  Score=222.21  Aligned_cols=236  Identities=16%  Similarity=0.241  Sum_probs=191.2

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      ++.|+|++    ++.||+|. |++|++||..+|+.++.+.  +|.+.|.+|+|+|++.++++|+.|++|+|||+.+++.+
T Consensus       108 ~~~l~wS~----~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          108 LNLVDWSS----GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             CBCEEECT----TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeEEECC----CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence            56688884    35777665 9999999999999877654  67889999999999999999999999999999999887


Q ss_pred             EEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676           97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus        97 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      ..+. |...+.++.++  +.++++|+.|+.+++||.............|...+..+.+.+.+. ++++++.|+.+++||.
T Consensus       183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~  259 (420)
T 4gga_A          183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPS  259 (420)
T ss_dssp             EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEES
T ss_pred             EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEee
Confidence            7765 77788887664  679999999999999998876555555667888999999887665 5667788899999999


Q ss_pred             CCCce----eEEe-cCCCCEEEEEEcCCC-cEEEE--e-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE-
Q 024676          176 RSGKI----VQTL-ETKSPVTSAEVSRDG-RYITT--A-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-  245 (264)
Q Consensus       176 ~~~~~----~~~~-~~~~~v~~~~~s~~~-~~l~~--~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  245 (264)
                      ++++.    +... .+...|.+++++|++ .++++  + .|+.|++||++++.++..+..+.......+.+. +..+++ 
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~-~~~lv~~  338 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH-YKELISG  338 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETT-TTEEEEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCC-CCeEEEE
Confidence            88753    2333 455679999999976 44443  2 478999999999999999888877778888886 455554 


Q ss_pred             -ecCCCeEEEEEcCcceee
Q 024676          246 -GGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       246 -gs~d~~v~vwd~~~g~~i  263 (264)
                       |+.|+.|++||+.+++++
T Consensus       339 sg~~d~~I~iwd~~~~~~v  357 (420)
T 4gga_A          339 HGFAQNQLVIWKYPTMAKV  357 (420)
T ss_dssp             ECTTTCCEEEEETTTCCEE
T ss_pred             EecCCCEEEEEECCCCcEE
Confidence             347999999999998875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-31  Score=228.88  Aligned_cols=240  Identities=11%  Similarity=0.079  Sum_probs=193.8

Q ss_pred             eccCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCC--CCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGE--TGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~--~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      .+|...|.+++|+|   +|++| ++|+.|+.|++|++.  +++.+..+.  .|...|.+++|+|++.++++|+.|+.+++
T Consensus        99 ~~~~~~v~~~~~s~---d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B           99 PPIYSYIRNLRLTS---DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             -CCCCCEEEEEECT---TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CccCCceEEEEEcC---CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence            46888999999996   88886 999999999999998  888888876  57789999999999999999999999999


Q ss_pred             EeCCCCcEEE----E-eecCCeEEEEEECCC---CCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           88 WDALTGDEKH----S-FEHKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        88 wd~~~~~~~~----~-~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                      |++.++....    . ..|...|.+++|+|+   +++|++++.|+.|++||+++++........|.+.+.+++|+  ++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d~~  253 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDY  253 (450)
T ss_dssp             EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--STT
T ss_pred             EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--CCC
Confidence            9998776442    3 347889999999999   99999999999999999987765444355688899999998  455


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecC--------------------------CCCEEEEEEcCCCcEEEEe--CCCcEE
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLET--------------------------KSPVTSAEVSRDGRYITTA--DGSSVK  211 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~--------------------------~~~v~~~~~s~~~~~l~~~--~~~~i~  211 (264)
                      ++++++.|+.|++||+++++++..+..                          ...+..+.++|++++++++  .++.|+
T Consensus       254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence            677778889999999999998776642                          2458899999999887654  578999


Q ss_pred             EEEC--CCc---eeeeEEecCCCCceeeEcCCCCCEEEEecC------CCeEEEEEcC
Q 024676          212 FWDA--NHF---GLVKGYNMPCNTESASLEPKLGNIFIAGGE------DMWVHVFDFH  258 (264)
Q Consensus       212 iwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~------d~~v~vwd~~  258 (264)
                      +|++  ...   +.+..+..+..+..+.+.+ .+.++++++.      +..|.+|.++
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFPYNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECSSCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEeccCCCCceeeccEeccCCceEEEEecC-CcEEEEEecccCCCCCCcceEEEEEE
Confidence            9999  544   6677777776667778887 3434444443      5558888654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-32  Score=254.96  Aligned_cols=247  Identities=15%  Similarity=0.108  Sum_probs=190.3

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE--Eee----e-----CCcCCEEEEEECCCCcEEEEec
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTF----E-----GHKGAVWSCCLDANALFSASGS   80 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~--~~~----~-----~H~~~V~~v~~~~~~~~l~s~s   80 (264)
                      +.||...+..++|+|   +|++|++|+.|++|++||+.++...  ..+    .     +|...|.+++|+||+++||+|+
T Consensus       431 l~G~~~~v~sv~~sp---dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs  507 (902)
T 2oaj_A          431 LKGGVRTKRQKLPAE---YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI  507 (902)
T ss_dssp             CCCSBCCCCCCCCCS---EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE
T ss_pred             ccCCcCCCCcccccc---cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe
Confidence            467777777777775   9999999999999999999887531  112    2     8999999999999999999999


Q ss_pred             CCCeEEEEeCCCCc---------------------------------------------EEEEee-cCCeEEEEEECCCC
Q 024676           81 ADFTAKLWDALTGD---------------------------------------------EKHSFE-HKHIVRACAFSEDT  114 (264)
Q Consensus        81 ~D~~v~iwd~~~~~---------------------------------------------~~~~~~-~~~~v~~~~~~~~~  114 (264)
                      .|++|+|||+.+++                                             ++..+. |..+|++++|+|++
T Consensus       508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG  587 (902)
T 2oaj_A          508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG  587 (902)
T ss_dssp             TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS
T ss_pred             cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc
Confidence            99999999987652                                             234443 88899999999999


Q ss_pred             CEEEEeeCCCcEEEeeCCCCCCCCe----Eec-cCCCCeEEEEEe-----cCC--CeEEEEeeCCCeEEEEEC---CCCc
Q 024676          115 HLLLTGGFEKILRIFDLNRPDAPPR----EVG-NSSGSIRTVAWL-----HSD--QTILSSCTDSGGVRLWDA---RSGK  179 (264)
Q Consensus       115 ~~l~s~~~d~~i~~~d~~~~~~~~~----~~~-~~~~~i~~~~~~-----~~~--~~~~~~~~~d~~v~iwd~---~~~~  179 (264)
                       +|++|+.|++|++||++++.....    ... .|.+.|++++|+     |++  ...+++++.|++|++||+   .+|+
T Consensus       588 -~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          588 -FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             -EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             -EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence             999999999999999876543211    121 567789999999     865  467888899999999999   7887


Q ss_pred             eeEEecC------CCCEEEEE-Ec----------------------CCCcEEEEeCCCcEEEEECCCceeeeEEecC-CC
Q 024676          180 IVQTLET------KSPVTSAE-VS----------------------RDGRYITTADGSSVKFWDANHFGLVKGYNMP-CN  229 (264)
Q Consensus       180 ~~~~~~~------~~~v~~~~-~s----------------------~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~-~~  229 (264)
                      ++..+..      ..+|.++. ++                      +++.+++++ +..||+|++.++++.++...+ +.
T Consensus       667 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~~~~~~  745 (902)
T 2oaj_A          667 FDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGFKYPLA  745 (902)
T ss_dssp             EEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEECSSCEE
T ss_pred             EEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEccccee
Confidence            7655532      35666565 54                      566666666 679999999998887666322 22


Q ss_pred             Ccee--eE------cCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          230 TESA--SL------EPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       230 ~~~~--~~------~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ..+.  ..      +...+..|++++.|+.|++|++-+++++
T Consensus       746 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~  787 (902)
T 2oaj_A          746 ATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQ  787 (902)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEE
T ss_pred             eeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHH
Confidence            2222  01      2234789999999999999999888875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-31  Score=223.33  Aligned_cols=248  Identities=19%  Similarity=0.319  Sum_probs=194.9

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+|..+|.+|+|+|   +|++|++|+.|+++++|+..+++  .+..+.+|.+.|.+++|+|++.+|++|+.|++|++||
T Consensus        57 ~~~h~~~v~~~~~sp---~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd  133 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSP---CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE  133 (345)
T ss_dssp             CSSCSSCEEEEEECT---TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccCCcEEEEEECC---CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEE
Confidence            368999999999996   89999999999999999988774  5678999999999999999999999999999999999


Q ss_pred             CCCCcE---EEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC-CeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           90 ALTGDE---KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        90 ~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      +.++..   ...+ .|...|..++|+|++++|++++.|+.|++||++.++.. ...+..|...+.+++|+|++. +++++
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~  212 (345)
T 3fm0_A          134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASC  212 (345)
T ss_dssp             ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred             CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEE
Confidence            987643   2333 47889999999999999999999999999998765422 234556888999999998654 67778


Q ss_pred             eCCCeEEEEECCCC---------------ceeEEec--CCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCCcee------
Q 024676          165 TDSGGVRLWDARSG---------------KIVQTLE--TKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL------  220 (264)
Q Consensus       165 ~~d~~v~iwd~~~~---------------~~~~~~~--~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~------  220 (264)
                      +.|++|+|||....               +++..+.  +...|.+++|+|++.+++ ++.|+.|++|+......      
T Consensus       213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~  292 (345)
T 3fm0_A          213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF  292 (345)
T ss_dssp             ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred             eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence            88999999996422               2233333  446799999999987665 56789999999865321      


Q ss_pred             -eeE--EecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          221 -VKG--YNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       221 -~~~--~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                       +..  +..+ .....++|+|+...+|++||.|+.|++|++.+++..
T Consensus       293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             EEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             EEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence             111  1122 335567888865579999999999999999887653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-30  Score=219.12  Aligned_cols=234  Identities=12%  Similarity=0.192  Sum_probs=177.2

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDA   90 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~   90 (264)
                      ..+|..+|.+|+|+|   ||++|++|+.|+ +++|+..+++.+.....  ..+..+++.+++..+ ++++.|++|++||.
T Consensus        15 ~~~h~~~V~~v~fs~---dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQ---DQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ----CCCCCEEEECT---TSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             cccCCCceEEEEECC---CCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            478999999999996   999999998775 68999887765544332  246778888877766 67888999999999


Q ss_pred             CCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC-CCCCeEeccCCCCeEEEEEecCCCeEEEE-eeCCC
Q 024676           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTVAWLHSDQTILSS-CTDSG  168 (264)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~d~  168 (264)
                      .+++.+..+.+..+|..+.++++.  +++ ..|+.+++||+.+. +.......    +...+++.+  ..++++ ++.+|
T Consensus        89 ~~~~~~~~~~~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           89 VKKQDVSRIKVDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             TTTEEEEEEECSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTT
T ss_pred             CCCcEEEEEECCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCc
Confidence            999999999999999999998874  333 35789999999876 33322221    333445555  444444 67889


Q ss_pred             eEEEEECCCCc----------------eeEEec-CCCCEEEEEEcCCCcEEEE-eCCCc-EEEEECCCceeeeEEe---c
Q 024676          169 GVRLWDARSGK----------------IVQTLE-TKSPVTSAEVSRDGRYITT-ADGSS-VKFWDANHFGLVKGYN---M  226 (264)
Q Consensus       169 ~v~iwd~~~~~----------------~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~-i~iwd~~~~~~~~~~~---~  226 (264)
                      .|++||+++++                ++..+. +..+|.+++|+|+|++|++ +.|++ |++||+++++++..+.   .
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h  239 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD  239 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            99999999865                144554 4567999999999988765 56898 9999999999999987   3


Q ss_pred             CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ......+.|+| ++.+|++|+.|+.|++||+.++.
T Consensus       240 ~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          240 RADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCC
Confidence            34455677877 58999999999999999987653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6e-32  Score=223.63  Aligned_cols=206  Identities=20%  Similarity=0.315  Sum_probs=164.9

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCC--CcEEEEecCCCeE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTA   85 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~~v   85 (264)
                      ..+.||..+|.+|+|+|. .++++|++|+.|++|++||.++++  .+..+.+|.+.|.+++|+|+  +.++++|+.|++|
T Consensus        51 ~~l~gH~~~V~~v~~~~~-~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i  129 (316)
T 3bg1_A           51 ADLRGHEGPVWQVAWAHP-MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI  129 (316)
T ss_dssp             EEEECCSSCEEEEEECCG-GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred             EEEcCCCccEEEEEeCCC-CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence            456799999999999852 147899999999999999998874  56678899999999999998  7899999999999


Q ss_pred             EEEeCCCCcEE---EE-eecCCeEEEEEECCC-----------------CCEEEEeeCCCcEEEeeCCCCCC--CCeEec
Q 024676           86 KLWDALTGDEK---HS-FEHKHIVRACAFSED-----------------THLLLTGGFEKILRIFDLNRPDA--PPREVG  142 (264)
Q Consensus        86 ~iwd~~~~~~~---~~-~~~~~~v~~~~~~~~-----------------~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~  142 (264)
                      ++||+..+...   .. ..|...|..+.|+|+                 +++|++|+.|++|++||++....  ....+.
T Consensus       130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~  209 (316)
T 3bg1_A          130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE  209 (316)
T ss_dssp             EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred             EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence            99999876322   11 136778999999997                 47899999999999999864421  123345


Q ss_pred             cCCCCeEEEEEecCC---CeEEEEeeCCCeEEEEECCCC---c-eeEE-ecCCCCEEEEEEcCCCcEEE-EeCCCcEEEE
Q 024676          143 NSSGSIRTVAWLHSD---QTILSSCTDSGGVRLWDARSG---K-IVQT-LETKSPVTSAEVSRDGRYIT-TADGSSVKFW  213 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~---~~~~~~~~~d~~v~iwd~~~~---~-~~~~-~~~~~~v~~~~~s~~~~~l~-~~~~~~i~iw  213 (264)
                      .|...+.+++|+|++   ..++++++.|++|+|||+++.   + .... ..+...|.+++|+|++++|+ ++.|+.|++|
T Consensus       210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence            678899999999875   367888999999999999863   1 1111 23456899999999998765 4678999999


Q ss_pred             ECC
Q 024676          214 DAN  216 (264)
Q Consensus       214 d~~  216 (264)
                      +..
T Consensus       290 ~~~  292 (316)
T 3bg1_A          290 KES  292 (316)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=9.5e-32  Score=228.96  Aligned_cols=227  Identities=15%  Similarity=0.130  Sum_probs=164.1

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCCce-----EEeeeCCcCCEEEEEECC--------CCcEEEEecCCCeEEEEeCCCCcE
Q 024676           29 PDGFFLVSASKDSSPMLRNGETGDW-----IGTFEGHKGAVWSCCLDA--------NALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~~~-----~~~~~~H~~~V~~v~~~~--------~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      +++++|++|+.|++|++|+..+++.     +..+.||++.|++++|+|        |+.+|+|||.|++|||||+.++.+
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~  178 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP  178 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence            4678999999999999999988754     345789999999999987        789999999999999999987654


Q ss_pred             -EEEeecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCCCCCCCeE------------------------eccCCCCeE
Q 024676           96 -KHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPRE------------------------VGNSSGSIR  149 (264)
Q Consensus        96 -~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~------------------------~~~~~~~i~  149 (264)
                       ...+.|..+|.+++|+|++ .+|++++.|++|++||+++++.....                        ...+...+.
T Consensus       179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence             4556789999999999987 47999999999999999876432211                        123455678


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEE------------------EEEEcC--CCcEEEEe-CC
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVT------------------SAEVSR--DGRYITTA-DG  207 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~------------------~~~~s~--~~~~l~~~-~~  207 (264)
                      ++.|.+.++..+++++.|+++++||+++++....+..+ ..+.                  ...++|  ++.+++++ .|
T Consensus       259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D  338 (393)
T 4gq1_A          259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH  338 (393)
T ss_dssp             EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred             eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence            88888767777888899999999999887654433211 1111                  122333  34466655 47


Q ss_pred             CcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          208 SSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       208 ~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      +.|++||+.+++.+..+.. .....+++|+| +|++|+++++|+ +.+|++
T Consensus       339 g~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          339 GLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred             CEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence            9999999998877665543 44556788888 599999999877 666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.5e-30  Score=220.30  Aligned_cols=240  Identities=13%  Similarity=0.084  Sum_probs=204.7

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDAL   91 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~   91 (264)
                      .+|...|.+++|+|   +++++++++.|+.+++||..+++.+..+..|...+.+++|+|++.++ ++++.|+.|++||+.
T Consensus       166 ~~~~~~v~~~~~~~---~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          166 KKKLGFVETISIPE---HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             HTTCCEEEEEEEGG---GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccCCceeEEEEcC---CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            48999999999985   89999999999999999999999999999999999999999999877 567789999999999


Q ss_pred             CCcEEEEeecCCeEEEEEECCCCCEEEEee--------CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGG--------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      +++....+.....+..++|+|+++.+++++        .|+.|++||+++++... . ..+...+..++|.|++..++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-~-~~~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          243 TKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID-T-IGPPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             TTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-E-EEEEECEEEEEECSSTTEEEEE
T ss_pred             CCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe-e-ccCCCCcceEEECCCCCEEEEE
Confidence            998888888777899999999999999888        48899999998764322 2 2344578889999888888888


Q ss_pred             eeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eC---------------CCcEEEEECCCceeeeEEecC
Q 024676          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---------------GSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~---------------~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      ++.++.|++||+++++.+..+.....+.+++++|+++++++ +.               |+.|++||+.+++.+..+...
T Consensus       321 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~  400 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG  400 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS
T ss_pred             ecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC
Confidence            88899999999999998888887788999999999986654 33               358999999999988888776


Q ss_pred             CCCceeeEcCCCCCEEEEec-CCCeEEEEEcC
Q 024676          228 CNTESASLEPKLGNIFIAGG-EDMWVHVFDFH  258 (264)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~gs-~d~~v~vwd~~  258 (264)
                      ..+..+.+.|+ ++++++++ .|+.|++|+++
T Consensus       401 ~~~~~~~~s~d-g~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          401 NQPTGLDVSPD-NRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             SSEEEEEECTT-SCEEEEEETTTTEEEEEEET
T ss_pred             CCCceEEEcCC-CCEEEEEECCCCeEEEEEec
Confidence            66677788875 77777665 59999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.1e-31  Score=251.32  Aligned_cols=245  Identities=21%  Similarity=0.374  Sum_probs=204.1

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECC--CCcEEEEecCCCeEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK   86 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~--~~~~l~s~s~D~~v~   86 (264)
                      ...+.+|..+|.+++|+|   +|++|++|+.|+.|++||..+++.+..+.+|.+.|.+++|++  ++.++++|+.|++|+
T Consensus       650 ~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~  726 (1249)
T 3sfz_A          650 LLDIKAHEDEVLCCAFSS---DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK  726 (1249)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred             EEEeccCCCCEEEEEEec---CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence            345578999999999996   899999999999999999999999999999999999999999  556899999999999


Q ss_pred             EEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe------------ccCCCCeEEEEE
Q 024676           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV------------GNSSGSIRTVAW  153 (264)
Q Consensus        87 iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~------------~~~~~~i~~~~~  153 (264)
                      +||+.++.....+ .|...|.+++|+|+++++++++.|+.+++||+++++......            ......+.+++|
T Consensus       727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  806 (1249)
T 3sfz_A          727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW  806 (1249)
T ss_dssp             EEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred             EEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence            9999999877766 488899999999999999999999999999987653221111            011235677888


Q ss_pred             ecCCCeEEEEeeCCCeEEEEECCCCceeEEec--CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCC-
Q 024676          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-  229 (264)
Q Consensus       154 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~-  229 (264)
                      +|++..+++ ++ ++.+.+||+.++..+..+.  +...+.+++++|++.+++++ .++.|++||+.++..+..+..+.. 
T Consensus       807 s~dg~~l~~-~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  884 (1249)
T 3sfz_A          807 SADGDKIIV-AA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW  884 (1249)
T ss_dssp             CTTSSEEEE-EE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCCCCEEEE-Ec-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence            887765554 44 4899999999998877663  45679999999999987665 578999999999988888876544 


Q ss_pred             CceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          230 TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       230 ~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ...+.+.| ++.+|++++.|+.|++||+.+
T Consensus       885 v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          885 VHGVMFSP-DGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEEHHH
T ss_pred             eEEEEECC-CCCEEEEEeCCCeEEEEEccc
Confidence            45566776 589999999999999999764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-31  Score=229.01  Aligned_cols=232  Identities=11%  Similarity=0.102  Sum_probs=175.0

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcE-----------------E----------EeCCCCceEEeee-CCcCCEEE
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPM-----------------L----------RNGETGDWIGTFE-GHKGAVWS   66 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~-----------------i----------~~~~~~~~~~~~~-~H~~~V~~   66 (264)
                      -...|.+|+|+|   ||+++|++|.|++|+                 +          |+..+++....+. +|...|.+
T Consensus        14 ~~~~v~sv~~Sp---DG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           14 FEDWKNNLTWAR---DGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CSSSSCCEEECT---TSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             hhccEEEEEECC---CCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            456788999996   999999999999884                 1          1122222112233 56888999


Q ss_pred             EEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCC-----eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCC-----
Q 024676           67 CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-----  136 (264)
Q Consensus        67 v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~-----  136 (264)
                      ++|+|+|+++|+++.||+|++||..+  .+..+.|..     .+.+++|+|++++|++|+.|++|++||+.++..     
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~  168 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF  168 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence            99999999999999999999999544  555555444     499999999999999999999999999987642     


Q ss_pred             -CCeEe----ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce---eEEec-C-CCCEEEEEEcCCCcEEEEeC
Q 024676          137 -PPREV----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI---VQTLE-T-KSPVTSAEVSRDGRYITTAD  206 (264)
Q Consensus       137 -~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~---~~~~~-~-~~~v~~~~~s~~~~~l~~~~  206 (264)
                       ....+    ..|...|.+++|+|++   +++++.|++|++||+.+++.   .+.+. . ...|.+++|+  +..++++.
T Consensus       169 i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          169 YFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             EEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             eeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence             11232    4466799999999876   45566789999999998773   24552 3 3579999999  46777666


Q ss_pred             CCcEEEEECCCcee-eeEEecCCCCceeeE--cCCCCCEEEEecCCCeEEEEEcC
Q 024676          207 GSSVKFWDANHFGL-VKGYNMPCNTESASL--EPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       207 ~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +++|++||+.++.. ...+........+.+  .+ ++..++++++||+ ++|..+
T Consensus       244 ~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          244 PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred             CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence            79999999998876 333333334455666  55 5889999999999 999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.2e-29  Score=206.92  Aligned_cols=236  Identities=14%  Similarity=0.198  Sum_probs=186.1

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      .++|+|+|   ++ +||+| .|++|++||..+++.++.+.  +|...|.+++|+|++.+++||+.|++|++||+.+++.+
T Consensus        28 ~~~l~WS~---~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSS---GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECT---TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECC---CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence            46799985   54 66665 59999999999999887665  67889999999999999999999999999999999887


Q ss_pred             EEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676           97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus        97 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      ..+. |...+..+  ++++.++++++.++.+++|+.............|...+..+.+.+.+. ++++++.|+.|++||+
T Consensus       103 ~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          103 RNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPS  179 (318)
T ss_dssp             EEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEES
T ss_pred             EEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEEC
Confidence            7765 56666554  556779999999999999998776555555567788889888887655 5667788899999999


Q ss_pred             CCCcee-----EEecCCCCEEEEEEcCCCc-EE--EEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE-
Q 024676          176 RSGKIV-----QTLETKSPVTSAEVSRDGR-YI--TTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-  245 (264)
Q Consensus       176 ~~~~~~-----~~~~~~~~v~~~~~s~~~~-~l--~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  245 (264)
                      ++++..     ........+..+.++|++. ++  +++ .++.|++||.+..................+.+. +..+++ 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~  258 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH-YKELISG  258 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETT-TTEEEEE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccc-ccceEEE
Confidence            987632     2223456799999999864 33  233 368999999999888777776666677777776 444443 


Q ss_pred             -ecCCCeEEEEEcCcceee
Q 024676          246 -GGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       246 -gs~d~~v~vwd~~~g~~i  263 (264)
                       |+.|+.|++||+.+++.+
T Consensus       259 sg~~d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          259 HGFAQNQLVIWKYPTMAKV  277 (318)
T ss_dssp             ECTTTCCEEEEETTTCCEE
T ss_pred             EEcCCCEEEEEECCCCcEE
Confidence             458999999999998865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3e-30  Score=214.06  Aligned_cols=212  Identities=19%  Similarity=0.299  Sum_probs=166.5

Q ss_pred             CCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCCc-----EEEEe-ecCCeEEEEEECCCCCEEEEee
Q 024676           49 ETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGD-----EKHSF-EHKHIVRACAFSEDTHLLLTGG  121 (264)
Q Consensus        49 ~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~-----~~~~~-~~~~~v~~~~~~~~~~~l~s~~  121 (264)
                      ++.++..+|+||++.|.+|+|+|+ +.+|+|||.|++|+|||+.+.+     +...+ .|..+|.+++|+|++++|++++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            444567789999999999999997 5899999999999999987654     23333 3788999999999999999999


Q ss_pred             CCCcEEEeeCCCCCCCC------------------------------------------eEeccCCCCeEEEEEecCC-C
Q 024676          122 FEKILRIFDLNRPDAPP------------------------------------------REVGNSSGSIRTVAWLHSD-Q  158 (264)
Q Consensus       122 ~d~~i~~~d~~~~~~~~------------------------------------------~~~~~~~~~i~~~~~~~~~-~  158 (264)
                      .|+.+++|+........                                          .....+...+..+++.+.. .
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            99999988875321100                                          0011234556777776554 3


Q ss_pred             eEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEc
Q 024676          159 TILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLE  236 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (264)
                      .++++++.|+.|++||+++++++..+. +..+|.+++|+|++++|++ +.|+.|++||+++.+.+..+..+.......+.
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~  265 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS  265 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecC
Confidence            467788888999999999999888775 4567999999999988765 56899999999999999888877666667776


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCccee
Q 024676          237 PKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ++ + .+++++.|+.|++||+.++..
T Consensus       266 ~~-~-~~~~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          266 PN-R-YWLCAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             SS-S-SEEEEEETTEEEEEETTTTEE
T ss_pred             CC-C-ceeeccCCCEEEEEECCCCeE
Confidence            63 4 567778899999999987654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=1.4e-30  Score=219.79  Aligned_cols=198  Identities=11%  Similarity=0.142  Sum_probs=159.9

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEE--eCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~--s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      ++...+.+++|+|   ||++|+++  +.|++|++||..+++.+..+. |.+.|.+++|+||++++++++.|+ +++|+..
T Consensus       131 ~~~~~~~~v~fSp---Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~  205 (365)
T 4h5i_A          131 NADDYTKLVYISR---EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTV  205 (365)
T ss_dssp             CTTCCEEEEEECT---TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETT
T ss_pred             CcccCEEEEEEcC---CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEec
Confidence            4555688899996   99987654  478999999999999888886 778899999999999999998665 6666666


Q ss_pred             CCcEEEEe---ecCCeEEEEEECCCCCEEEEeeCCC----cEEEeeCCCCCCC---CeEeccCCCCeEEEEEecCCCeEE
Q 024676           92 TGDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEK----ILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        92 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~----~i~~~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      ++......   .|...|..++|+|+++++++++.|+    .++.|++......   ......+...+.+++|+|++. ++
T Consensus       206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~l  284 (365)
T 4h5i_A          206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LA  284 (365)
T ss_dssp             TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EE
T ss_pred             cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ce
Confidence            66654432   3677899999999999999999887    5888887654322   123445778899999998654 67


Q ss_pred             EEeeCCCeEEEEECCCCceeEEe-c-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCC
Q 024676          162 SSCTDSGGVRLWDARSGKIVQTL-E-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANH  217 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~  217 (264)
                      ++++.|++|+|||+++++++..+ . +..+|++++|+|||++|++ +.|++|+|||+..
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            78888999999999999998876 4 4678999999999998876 5689999999954

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=9e-29  Score=209.49  Aligned_cols=229  Identities=11%  Similarity=0.108  Sum_probs=191.8

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEE
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACA  109 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~  109 (264)
                      +..+++++.|+.|++||..+++.+..+.+|.. +.+++|+|++.++ ++++.|++|++||..+++.+..+.+...+..++
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~   80 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceE
Confidence            35789999999999999999999989988854 8999999999876 788899999999999999888888778999999


Q ss_pred             ECCCCCEEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC
Q 024676          110 FSEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS  188 (264)
Q Consensus       110 ~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~  188 (264)
                      |+|+++.++.+ +.++.|++||+.+++.... . .....+..++|++++..++++++.++.|++||+++++.+..+..+.
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  158 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-V-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR  158 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEE-E-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEE-E-eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC
Confidence            99999987654 4679999999987654322 2 2345788999999888777888888999999999999988888777


Q ss_pred             CEEEEEEcCCCcEE-EEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEec---CCCeEEEEEcCcceee
Q 024676          189 PVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG---EDMWVHVFDFHTGEQI  263 (264)
Q Consensus       189 ~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs---~d~~v~vwd~~~g~~i  263 (264)
                      .+..++++|+++++ +++ .++.|++||+++++.+..+.....+..+.+.++ ++++++++   .|+.|++||+.+++.+
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPE-GTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTT-SSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCC-CCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            88999999999766 444 468999999999988888876666667778774 77777766   6999999999988754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=212.61  Aligned_cols=209  Identities=19%  Similarity=0.242  Sum_probs=172.3

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCC--CcEEEEecCCC
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN--ALFSASGSADF   83 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D~   83 (264)
                      ....+.+|..+|.+++|+|. .++++|++|+.|+.|++|+..+++  .+..+.+|...|.+++|+|+  +.++++++.|+
T Consensus        47 ~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  125 (379)
T 3jrp_A           47 LIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  125 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCG-GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             eeeEecCCCCcEEEEEeCCC-CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence            33456789999999999862 138899999999999999999987  67788899999999999999  89999999999


Q ss_pred             eEEEEeCCCCc---EEEEeecCCeEEEEEECC-------------CCCEEEEeeCCCcEEEeeCCCCCCCC---eEeccC
Q 024676           84 TAKLWDALTGD---EKHSFEHKHIVRACAFSE-------------DTHLLLTGGFEKILRIFDLNRPDAPP---REVGNS  144 (264)
Q Consensus        84 ~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~-------------~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~  144 (264)
                      .|++||+.++.   ......|...|.+++|+|             +++++++++.|+.|++||++.+....   .....|
T Consensus       126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h  205 (379)
T 3jrp_A          126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  205 (379)
T ss_dssp             EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence            99999998873   223345888999999999             69999999999999999997654321   234457


Q ss_pred             CCCeEEEEEecCC--CeEEEEeeCCCeEEEEECCCCce---eEEec---CCCCEEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676          145 SGSIRTVAWLHSD--QTILSSCTDSGGVRLWDARSGKI---VQTLE---TKSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (264)
Q Consensus       145 ~~~i~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~---~~~~~---~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~  215 (264)
                      ...+.+++|+|++  +.++++++.|+.|++||+++++.   .....   +...+.+++|+|++++|++ +.|+.|++||+
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            8899999999874  67788888899999999998742   22222   4567999999999987654 67899999998


Q ss_pred             CC
Q 024676          216 NH  217 (264)
Q Consensus       216 ~~  217 (264)
                      +.
T Consensus       286 ~~  287 (379)
T 3jrp_A          286 NL  287 (379)
T ss_dssp             EE
T ss_pred             CC
Confidence            74

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3.9e-29  Score=212.01  Aligned_cols=242  Identities=16%  Similarity=0.250  Sum_probs=165.5

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC---CcEEEEecCCCeEEEEeC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWDA   90 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~---~~~l~s~s~D~~v~iwd~   90 (264)
                      +|..+|.+++|+|  .++++|++++.|+.+++|+..+++.+..+. |...+.++++.+.   +.++++++.|+.|++||+
T Consensus        97 ~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           97 VHRYSVETVQWYP--HDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             CCSSCEEEEEECT--TCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             cCCCcEEEEEEcc--CCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            5999999999997  266799999999999999999998887776 7788999999884   459999999999999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCCCCCeEe---------------ccCCCCeEEEEE
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREV---------------GNSSGSIRTVAW  153 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~---------------~~~~~~i~~~~~  153 (264)
                      .++.....+. |..+|.+++|+|+++ ++++++.|+.+++||++.........               ..+...+.+++|
T Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence            9988777765 888999999999988 58899999999999998765333332               356788999999


Q ss_pred             ecCCCeEEEEeeCCCeEEEEECCCCc-----------------------------------------------eeEEec-
Q 024676          154 LHSDQTILSSCTDSGGVRLWDARSGK-----------------------------------------------IVQTLE-  185 (264)
Q Consensus       154 ~~~~~~~~~~~~~d~~v~iwd~~~~~-----------------------------------------------~~~~~~-  185 (264)
                      +|++. ++++++.|+.|++||+++++                                               ++..+. 
T Consensus       254 ~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  332 (408)
T 4a11_B          254 TSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG  332 (408)
T ss_dssp             CTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred             cCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence            98655 56667778999999987654                                               233333 


Q ss_pred             CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          186 TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       186 ~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      +..+|.+++|+|++++|++ +.|+.|++||+++++.+.........  ..+.+.....+.+.+.|+.+++|+...-+
T Consensus       333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~~~~  407 (408)
T 4a11_B          333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWSHPQFE  407 (408)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred             CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecCCcccC
Confidence            3467999999999987765 56899999999998877655433222  22333345667788899999999865433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.7e-28  Score=210.47  Aligned_cols=241  Identities=11%  Similarity=0.094  Sum_probs=196.4

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-----eeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-----TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-----~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      ..+.+++|+|   ++.++++++.|+.+++||..+++.+.     .+.+|.+.|.+++|++++.++++++.|+.|++||+.
T Consensus       123 ~~~~~~~~s~---~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          123 FQPKSVRFID---NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             SCBCCCEESS---SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEeC---CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence            3455899996   78899999999999999999998776     456899999999999999999999999999999999


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee----
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT----  165 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----  165 (264)
                      +++....+. |...+..++|+|+++.++++ +.|+.|++||+++++.. .. ......+..++|.|++..+++++.    
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI-RK-TDKIGLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EE-CCCCSEEEEEEECTTSSEEEEEEEESCT
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-EE-ecCCCCceEEEEcCCCCEEEEEECCCCc
Confidence            988877775 67789999999999988654 47999999999866432 22 223456888999988776666553    


Q ss_pred             ---CCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCC
Q 024676          166 ---DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (264)
Q Consensus       166 ---~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (264)
                         .|+.|++||+++++.+..+.....+..++++|+++.+ ++ +.++.|++||+++++.+..+.....+..+.+.++ +
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~d-g  356 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPD-G  356 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTT-S
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCC-C
Confidence               4689999999999887777655678899999999644 44 4578999999999988888877666777888875 7


Q ss_pred             CEEEEecC---------------CCeEEEEEcCcceee
Q 024676          241 NIFIAGGE---------------DMWVHVFDFHTGEQI  263 (264)
Q Consensus       241 ~~~~~gs~---------------d~~v~vwd~~~g~~i  263 (264)
                      +++++++.               |+.|++||+.+++.+
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~  394 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK  394 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence            76776665               579999999988764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1e-29  Score=208.66  Aligned_cols=174  Identities=11%  Similarity=0.011  Sum_probs=130.5

Q ss_pred             CCCCcEEEeC-CCCceEEeeeCCcCCEEEEEECC---CCcEEEEecCCCeEEEEeCCCCcEEEEee-cC---CeEEEEEE
Q 024676           39 KDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEKHSFE-HK---HIVRACAF  110 (264)
Q Consensus        39 ~d~~v~i~~~-~~~~~~~~~~~H~~~V~~v~~~~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~---~~v~~~~~  110 (264)
                      .|+.|++|++ .+|+.+..+.+|...+..++|++   ++.+++|||.|++|||||+.+++.+.++. |.   ..+..++|
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            3888888888 44777777778888888888887   67889999999999999999999989886 32   35677889


Q ss_pred             CCCCCEE------------EEeeCCCcEEEeeCCCCCCCCeEe----ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676          111 SEDTHLL------------LTGGFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (264)
Q Consensus       111 ~~~~~~l------------~s~~~d~~i~~~d~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd  174 (264)
                      +|+++++            ++|+.|+++++||..++.......    ..+.+......+.   +.++++++.|++|+|||
T Consensus       235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWD  311 (356)
T 2w18_A          235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWD  311 (356)
T ss_dssp             EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEE
Confidence            9999876            567889999999997664322111    1233333333322   34688888999999999


Q ss_pred             CCCCceeEEecCC-CC-EEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676          175 ARSGKIVQTLETK-SP-VTSAEVSRDGRYITT-ADGSSVKFWDA  215 (264)
Q Consensus       175 ~~~~~~~~~~~~~-~~-v~~~~~s~~~~~l~~-~~~~~i~iwd~  215 (264)
                      +++++++.++..+ .. +.+++|+|||++|++ +.|++|+|||+
T Consensus       312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999999754 33 446899999998766 45899999995

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.8e-29  Score=207.76  Aligned_cols=216  Identities=17%  Similarity=0.256  Sum_probs=173.9

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC---------ceEEeeeCCcCCEEEEEECCC--CcEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDAN--ALFS   76 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~---------~~~~~~~~H~~~V~~v~~~~~--~~~l   76 (264)
                      ....+.+|..+|.+|+|+|. .++++|++|+.|+.|++|+..++         +.+..+.+|.+.|.+++|+|+  +.++
T Consensus        49 ~~~~~~~~~~~v~~~~~~~~-~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           49 LSDSWRAHDSSIVAIDWASP-EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEECCSSCEEEEEECCG-GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             ecceeccCCCcEEEEEEcCC-CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            34455789999999999962 15889999999999999999887         457788899999999999999  9999


Q ss_pred             EEecCCCeEEEEeCCCCcEEEEe--------------ecCCeEEEEEECCC---CCEEEEeeCCCcEEEeeCCCCCCC-C
Q 024676           77 ASGSADFTAKLWDALTGDEKHSF--------------EHKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAP-P  138 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~~~~~~--------------~~~~~v~~~~~~~~---~~~l~s~~~d~~i~~~d~~~~~~~-~  138 (264)
                      ++++.|+.|++||+.++.....+              .+...+.++.|+|+   +.++++++.|+.+.+|+...+... .
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            99999999999999877643322              25567899999997   899999999999988877655432 2


Q ss_pred             eEeccCCCCeEEEEEecCCC---eEEEEeeCCCeEEEEECCCC-------------------------------------
Q 024676          139 REVGNSSGSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSG-------------------------------------  178 (264)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~~---~~~~~~~~d~~v~iwd~~~~-------------------------------------  178 (264)
                      .....|...+.+++|+|++.   .++++++.|+.|++||++++                                     
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            33445788999999998763   67888899999999999875                                     


Q ss_pred             ---------ceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEE
Q 024676          179 ---------KIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       179 ---------~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~  224 (264)
                               +.+..+. +..+|.+++|+|++++|++ +.|+.|++||+.+.+.++.+
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                     3444444 4567999999999987655 66899999999876554433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=211.50  Aligned_cols=231  Identities=11%  Similarity=0.035  Sum_probs=171.9

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC---------CCceEEeee-CCcCCEEEEEECC--CCcEEEEecCCC
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE---------TGDWIGTFE-GHKGAVWSCCLDA--NALFSASGSADF   83 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~---------~~~~~~~~~-~H~~~V~~v~~~~--~~~~l~s~s~D~   83 (264)
                      ..+|.++.|+|   +   +++++.|+++++|+..         +++.++.+. +|.++|.+++|+|  ++.++++++.|+
T Consensus        76 ~~~v~~~~~~~---~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg  149 (343)
T 3lrv_A           76 TPNPRTGGEHP---A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG  149 (343)
T ss_dssp             EECCCTTCCCC---S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC
T ss_pred             cCCceeeeeCC---c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC
Confidence            35677777876   3   8999999999999665         555455554 7889999999999  999999999999


Q ss_pred             eEEEEeCCCCcEEEEe--ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-CCCCeEEEEEecCCCeE
Q 024676           84 TAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  160 (264)
                      +|++||+.+++.....  .+...+.+++|+|+++++++|+.|+.|++||+++++.....+.. |.+++.+++|+|++. +
T Consensus       150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~  228 (343)
T 3lrv_A          150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-W  228 (343)
T ss_dssp             CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-E
T ss_pred             cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-E
Confidence            9999999999876655  34557999999999999999999999999999988765344444 889999999998665 4


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEecC----CCCE--EEEEEcCCCcEEEE-eC-CCcEEEEECCCceeeeEEecCCCCce
Q 024676          161 LSSCTDSGGVRLWDARSGKIVQTLET----KSPV--TSAEVSRDGRYITT-AD-GSSVKFWDANHFGLVKGYNMPCNTES  232 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v--~~~~~s~~~~~l~~-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~  232 (264)
                      ++++++ +.|++||+++++++..+..    ..++  .+++|+|+++++++ +. ++.+++|++.+....-..   .....
T Consensus       229 l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~  304 (343)
T 3lrv_A          229 MVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESA  304 (343)
T ss_dssp             EEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEE
T ss_pred             EEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---cCcee
Confidence            555565 4999999999877544432    1223  36999999998876 34 789999998654321111   01112


Q ss_pred             eeEcC--CCCCEEEEecCCCeEEEEEc
Q 024676          233 ASLEP--KLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       233 ~~~~~--~~~~~~~~gs~d~~v~vwd~  257 (264)
                      ..+.+  .....+++++.|+.++++-.
T Consensus       305 ~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          305 LCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             CCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             EecCccccccceeEEEecCCceEEEEe
Confidence            22222  13678888889999988853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=9.5e-29  Score=212.73  Aligned_cols=210  Identities=19%  Similarity=0.306  Sum_probs=174.7

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeCCCCce-------EEeeeCCcCCEEEEEECC-CCcEE
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDW-------IGTFEGHKGAVWSCCLDA-NALFS   76 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~~~~~~-------~~~~~~H~~~V~~v~~~~-~~~~l   76 (264)
                      ......+.+|..+|.+|.|+|   ++. +|++|+.|+.|++|++.++..       ...+.+|.+.|.+++|+| ++.++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  247 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNP---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF  247 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECT---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred             CCCcEEecCCCCCeEEEEeCC---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence            455566789999999999997   565 999999999999999987422       356778999999999999 67889


Q ss_pred             EEecCCCeEEEEeCCCC---cEEEEe-ecCCeEEEEEECCCCC-EEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE
Q 024676           77 ASGSADFTAKLWDALTG---DEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~  151 (264)
                      ++++.|+.|++||+.++   .....+ .|...|++++|+|+++ ++++|+.|+.|++||++........+..|.+.+.++
T Consensus       248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i  327 (430)
T 2xyi_A          248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  327 (430)
T ss_dssp             EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE
Confidence            99999999999999876   344444 5888999999999887 688999999999999987655556666788999999


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCC--------------CceeEEecC-CCCEEEEEEcCCCc-EEE-EeCCCcEEEEE
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARS--------------GKIVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWD  214 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~--------------~~~~~~~~~-~~~v~~~~~s~~~~-~l~-~~~~~~i~iwd  214 (264)
                      +|+|.+..++++++.|+.|+|||+++              .+.+..+.. ...|.+++|+|++. +++ ++.|+.|++|+
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            99998888888889999999999987              244455543 45799999999997 554 56689999999


Q ss_pred             CCCc
Q 024676          215 ANHF  218 (264)
Q Consensus       215 ~~~~  218 (264)
                      +...
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            8753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.9e-30  Score=219.83  Aligned_cols=206  Identities=11%  Similarity=0.000  Sum_probs=155.3

Q ss_pred             eeccCCCeeeeEeccC-----CCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCc-EEEEecCCCeE
Q 024676           12 CHGHSRPVVDLFYSPI-----TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTA   85 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~-----~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v   85 (264)
                      +.||++.|++|+|+|.     ..||++||+||.|++|++||+.++..+..+.+|..+|.+++|+|++. ++++|+.|++|
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v  211 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI  211 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence            4699999999999983     34899999999999999999998887778888999999999999874 79999999999


Q ss_pred             EEEeCCCCcEEEEe--------------------------ecCCeEEEEEEC-CCCCEEEEeeCCCcEEEeeCCCCCCCC
Q 024676           86 KLWDALTGDEKHSF--------------------------EHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPP  138 (264)
Q Consensus        86 ~iwd~~~~~~~~~~--------------------------~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~  138 (264)
                      ++||+.++......                          .|...+..+.|. |+++.+++++.|+.+++||+..+....
T Consensus       212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~  291 (393)
T 4gq1_A          212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN  291 (393)
T ss_dssp             EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred             EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence            99999877543221                          144567777775 799999999999999999987543221


Q ss_pred             eEeccCCCCe------------------EEEEEe-cCCCeEEEEeeCCCeEEEEECCCCceeEEe-cCCCCEEEEEEcCC
Q 024676          139 REVGNSSGSI------------------RTVAWL-HSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRD  198 (264)
Q Consensus       139 ~~~~~~~~~i------------------~~~~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~  198 (264)
                      .. ..+...+                  ....+. +.++.++++++.|+.|++||.++++++... .+..+|.+++|+||
T Consensus       292 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspd  370 (393)
T 4gq1_A          292 EI-SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQD  370 (393)
T ss_dssp             -------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTT
T ss_pred             eE-eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCC
Confidence            11 1111111                  112233 335567888888999999999999876554 56678999999999


Q ss_pred             CcEEEEeCCCcEEEEECCCc
Q 024676          199 GRYITTADGSSVKFWDANHF  218 (264)
Q Consensus       199 ~~~l~~~~~~~i~iwd~~~~  218 (264)
                      |++|+++.++.+.+|.+..+
T Consensus       371 G~~LA~as~~Gv~lvrL~gf  390 (393)
T 4gq1_A          371 GSHLAIATEGSVLLTRLMGF  390 (393)
T ss_dssp             SSEEEEEESSEEEEEEEGGG
T ss_pred             CCEEEEEeCCCeEEEEEeCc
Confidence            99999888788888886544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.9e-30  Score=222.37  Aligned_cols=190  Identities=12%  Similarity=0.065  Sum_probs=156.7

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcC-----CEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG-----AVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~-----~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      +|...|.+|+|+|   +|++||+++.||.|++|+...  ++..+. |..     .|.+++|+||++++++|+.||+|+||
T Consensus        83 ~~~~~V~~vawSP---dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           83 QPVCYPRVCKPSP---IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF  156 (588)
T ss_dssp             SCSCCEEEEEECS---SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            6788999999996   999999999999999999654  667777 766     49999999999999999999999999


Q ss_pred             eCCCCc-------EEEEee-----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC--CeEe-ccCCCCeEEEEE
Q 024676           89 DALTGD-------EKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREV-GNSSGSIRTVAW  153 (264)
Q Consensus        89 d~~~~~-------~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~-~~~~~~i~~~~~  153 (264)
                      |+.++.       .+.++.     |...|.+++|+|++  +++++.|+++++||+.++...  ...+ ..|...|..++|
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            998875       245542     56789999999999  788999999999999776532  1233 357788999999


Q ss_pred             ecCCCeEEEEeeCCCeEEEEECCCCce-eEEecCCCCEEEEEE--cCCCcEEEEeC-CCcEEEEECC
Q 024676          154 LHSDQTILSSCTDSGGVRLWDARSGKI-VQTLETKSPVTSAEV--SRDGRYITTAD-GSSVKFWDAN  216 (264)
Q Consensus       154 ~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~--s~~~~~l~~~~-~~~i~iwd~~  216 (264)
                      +  +. .++++++ ++|++||+.+++. .....+...+..+.+  +|++..++.+. +++ ++|...
T Consensus       235 s--g~-~LASa~~-~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          235 V--DY-KVVLTCP-GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             E--TT-EEEEECS-SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             E--CC-EEEEEeC-CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            8  44 5555554 9999999999887 445467778999999  99998887765 788 999875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.7e-28  Score=198.77  Aligned_cols=234  Identities=10%  Similarity=0.051  Sum_probs=158.9

Q ss_pred             eeeeEeccCCCCC-eEEEEEeCCCCcEEEeCCCC---ceEEeeeCCcCC-------------------------EEEEEE
Q 024676           19 VVDLFYSPITPDG-FFLVSASKDSSPMLRNGETG---DWIGTFEGHKGA-------------------------VWSCCL   69 (264)
Q Consensus        19 v~~~~~~~~~~~g-~~l~t~s~d~~v~i~~~~~~---~~~~~~~~H~~~-------------------------V~~v~~   69 (264)
                      +.++.|-.  +++ ...+.......|++|+..++   +.++++.+|+.+                         |+++++
T Consensus        42 ~~~~~~~~--~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           42 VSAMFWER--AGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEC------CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             Eeeeeecc--CCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            44555543  222 23344444668999999998   677888888764                         455666


Q ss_pred             CCC----CcEEEEecC--------------------CCeEEEEeCCC-CcEEEEe-ecCCeEEEEEECC---CCCEEEEe
Q 024676           70 DAN----ALFSASGSA--------------------DFTAKLWDALT-GDEKHSF-EHKHIVRACAFSE---DTHLLLTG  120 (264)
Q Consensus        70 ~~~----~~~l~s~s~--------------------D~~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~~---~~~~l~s~  120 (264)
                      +|+    +..+++++.                    |+.|++|++.. ++.+... .|...+..++|+|   ++.+|+++
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence            667    777777553                    78888888743 5554443 3666777788888   66899999


Q ss_pred             eCCCcEEEeeCCCCCCCCeEeccC--CCCeEEEEEecCCCeE-----------EEEeeCCCeEEEEECCCCceeEEec--
Q 024676          121 GFEKILRIFDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTI-----------LSSCTDSGGVRLWDARSGKIVQTLE--  185 (264)
Q Consensus       121 ~~d~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~-----------~~~~~~d~~v~iwd~~~~~~~~~~~--  185 (264)
                      +.|++||+||+++++.......++  ...+.+++|+|++..+           +++++.|++|++||..+++++..+.  
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~  279 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC  279 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence            999999999999887554443332  2356677888866544           3678889999999999999876541  


Q ss_pred             ---CC-CCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-Cc-eeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          186 ---TK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TE-SASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       186 ---~~-~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                         .+ ..+.+..+  ++.++++ +.|++|+|||++++++++++..+.. .. ..+|+| +|++|++||.|++|||||+
T Consensus       280 ~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          280 LPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred             ccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence               11 22332223  3556665 4689999999999999999875433 33 357887 5899999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5.7e-28  Score=201.92  Aligned_cols=214  Identities=14%  Similarity=0.230  Sum_probs=165.1

Q ss_pred             eCCCCceEEeeeCCcCCEEEEEECCC---CcEEEEecCCCeEEEEeCCC-CcEE-EEe-ecCCeEEEEEECCCCCEEEEe
Q 024676           47 NGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWDALT-GDEK-HSF-EHKHIVRACAFSEDTHLLLTG  120 (264)
Q Consensus        47 ~~~~~~~~~~~~~H~~~V~~v~~~~~---~~~l~s~s~D~~v~iwd~~~-~~~~-~~~-~~~~~v~~~~~~~~~~~l~s~  120 (264)
                      +....+.+..+.+|.+.|.+++|+|+   +.++++|+.|+.|++||+.+ +... ..+ .|..+|.+++|+|++++|+++
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence            44455667788999999999999999   59999999999999999987 5443 333 488999999999999999999


Q ss_pred             eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe-cCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCC----------
Q 024676          121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP----------  189 (264)
Q Consensus       121 ~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------  189 (264)
                      +.|+.|++||+++++..  ....+...+.+++|. .+++.++++++.|+.|++||+++++.+..+..+..          
T Consensus       105 ~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  182 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAI--QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM  182 (368)
T ss_dssp             ETTSEEEEEETTTTEEE--EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred             cCCCcEEEEEcCCCCce--eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence            99999999999876532  344578899999993 23456777888889999999999887666554332          


Q ss_pred             --------------------------------EEEEEEcCCCc-----EEEEeCCCcEEEEECCCc---eeeeEEecCC-
Q 024676          190 --------------------------------VTSAEVSRDGR-----YITTADGSSVKFWDANHF---GLVKGYNMPC-  228 (264)
Q Consensus       190 --------------------------------v~~~~~s~~~~-----~l~~~~~~~i~iwd~~~~---~~~~~~~~~~-  228 (264)
                                                      ...+.+.++..     +++++.++.|++||++..   ..+..+..+. 
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  262 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS  262 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence                                            23333333322     555677889999999876   3445554432 


Q ss_pred             ------------CCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          229 ------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       229 ------------~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                                  ....+.++| ++.+|++|+.|+.|++||+.+++.+
T Consensus       263 ~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~  308 (368)
T 3mmy_A          263 NGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKL  308 (368)
T ss_dssp             C----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             ccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEE
Confidence                        345667777 5889999999999999999988764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.2e-27  Score=200.87  Aligned_cols=234  Identities=10%  Similarity=0.136  Sum_probs=175.8

Q ss_pred             cCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      +...+..+.+.+   +++.+ ++++.|+++++||..+++.+..+. |...|.+++++++...+  + .|+.|++||+.++
T Consensus        57 ~~~~~~~~~~~~---~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~--~-~~~~i~i~d~~~~  129 (355)
T 3vu4_A           57 EMRHLSKVRMLH---RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV--S-YGDVISVFKFGNP  129 (355)
T ss_dssp             ECSCCCEEEECT---TSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE--E-ETTEEEEEESSTT
T ss_pred             ecCCeEEEEEcC---CCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE--E-EcCEEEEEECCCC
Confidence            334577777775   44455 678889999999999999888887 66799999999875433  2 3789999999887


Q ss_pred             -cEEEEeecCCeEEEEEECCCCCEEEE--eeCCCcEEEeeCCCCCC--------------C-CeEeccCCCCeEEEEEec
Q 024676           94 -DEKHSFEHKHIVRACAFSEDTHLLLT--GGFEKILRIFDLNRPDA--------------P-PREVGNSSGSIRTVAWLH  155 (264)
Q Consensus        94 -~~~~~~~~~~~v~~~~~~~~~~~l~s--~~~d~~i~~~d~~~~~~--------------~-~~~~~~~~~~i~~~~~~~  155 (264)
                       +.+..+..  +...+++++  .+++.  |+.|+.|++||++++..              + ...+..|.+.+.+++|+|
T Consensus       130 ~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~  205 (355)
T 3vu4_A          130 WKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR  205 (355)
T ss_dssp             CCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred             ceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence             55555544  555566777  45555  67899999999986541              1 355667899999999998


Q ss_pred             CCCeEEEEeeCCCe-EEEEECCCCceeEEec---CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeee--------
Q 024676          156 SDQTILSSCTDSGG-VRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK--------  222 (264)
Q Consensus       156 ~~~~~~~~~~~d~~-v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~--------  222 (264)
                      ++ .++++++.|++ |++||+++++++..+.   +..+|.+++|+|++++|++ +.|++|++||++.....+        
T Consensus       206 ~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          206 KS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             TS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             CC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            55 56778889998 9999999999998886   5678999999999988765 568999999997543211        


Q ss_pred             ------------EEecCC----CCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          223 ------------GYNMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       223 ------------~~~~~~----~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                                  .+..+.    ....+++.+ ++.++++++.|+.+++|++..++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence                        111111    114456776 58899999999999999987654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2e-28  Score=224.59  Aligned_cols=210  Identities=18%  Similarity=0.232  Sum_probs=172.5

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCC--CcEEEEecCC
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN--ALFSASGSAD   82 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~--~~~l~s~s~D   82 (264)
                      .....+.+|.++|.++.|+|. .++++|++|+.||.|++|++.+++  .+..+.+|.+.|.+++|+|+  +.++++|+.|
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~-~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHP-KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCT-TSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccceeccCCcCceEEEEecCC-CCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            334456799999999999862 138899999999999999999886  67788899999999999999  9999999999


Q ss_pred             CeEEEEeCCCCc---EEEEeecCCeEEEEEECC-------------CCCEEEEeeCCCcEEEeeCCCCCCC---CeEecc
Q 024676           83 FTAKLWDALTGD---EKHSFEHKHIVRACAFSE-------------DTHLLLTGGFEKILRIFDLNRPDAP---PREVGN  143 (264)
Q Consensus        83 ~~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~-------------~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~  143 (264)
                      ++|++||+.++.   ......|...|.+++|+|             +++++++|+.|+.|++||++++...   ......
T Consensus       123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  202 (753)
T 3jro_A          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (753)
T ss_dssp             SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence            999999998773   333345888999999999             5899999999999999999766432   233456


Q ss_pred             CCCCeEEEEEecCC--CeEEEEeeCCCeEEEEECCCCcee-----E-EecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEE
Q 024676          144 SSGSIRTVAWLHSD--QTILSSCTDSGGVRLWDARSGKIV-----Q-TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWD  214 (264)
Q Consensus       144 ~~~~i~~~~~~~~~--~~~~~~~~~d~~v~iwd~~~~~~~-----~-~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd  214 (264)
                      |.+.+.+++|+|++  +.++++++.||.|++||+++++..     . ...+...+.+++|+|++.++++ +.|+.|++||
T Consensus       203 h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            78899999999874  677888888999999999987421     1 1124567999999999987765 5689999999


Q ss_pred             CCC
Q 024676          215 ANH  217 (264)
Q Consensus       215 ~~~  217 (264)
                      ++.
T Consensus       283 ~~~  285 (753)
T 3jro_A          283 ENL  285 (753)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.2e-25  Score=192.58  Aligned_cols=247  Identities=13%  Similarity=0.047  Sum_probs=185.5

Q ss_pred             eEeeccCCCeeeeEeccC-----------CCCCeEEEEEeCC------CCcEEEeCCCCceEEeeeCCcCCEEEEEECCC
Q 024676           10 LVCHGHSRPVVDLFYSPI-----------TPDGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN   72 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~-----------~~~g~~l~t~s~d------~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~   72 (264)
                      ..+.+|...+..+++++.           .+.+..++.++.+      +.+++||... ...+.+.+|.+.|.+++|+||
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            345678888877776641           1125566666654      7899999974 446678889999999999999


Q ss_pred             CcEEEEecCCC---eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEE-EeeCCCc--EEEeeCCCCCCCCeEeccCCC
Q 024676           73 ALFSASGSADF---TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKI--LRIFDLNRPDAPPREVGNSSG  146 (264)
Q Consensus        73 ~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~--i~~~d~~~~~~~~~~~~~~~~  146 (264)
                      ++++++++.|+   .|++||+.+++......+...+..++|+|+++.|+ +++.++.  |++||+++++.  ..+..+..
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCC
Confidence            99999998885   99999999998776666788899999999999777 6666554  99999987643  44455667


Q ss_pred             CeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC-C---CcEEEEECCCcee
Q 024676          147 SIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-G---SSVKFWDANHFGL  220 (264)
Q Consensus       147 ~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~---~~i~iwd~~~~~~  220 (264)
                      .+..++|+|++..++.++.+++  .|.+||+++++..........+.+++|+|+|++|+.+. +   ..|.+||+.+++.
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            8899999998877776665455  67788999887544333445688999999999876542 2   4799999998765


Q ss_pred             eeEEecCCCCceeeEcCCCCCEEEEecCCC---eEEEEEcCcce
Q 024676          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGE  261 (264)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~v~vwd~~~g~  261 (264)
                      . .+..........+.| ++++|++++.|+   .|++||++.++
T Consensus       348 ~-~l~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          348 Q-VLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             E-ECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             E-EecCCCCcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc
Confidence            3 333333455677887 488888888877   89999987543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=3e-25  Score=196.18  Aligned_cols=229  Identities=13%  Similarity=0.168  Sum_probs=185.3

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeC--CCCcEEEEeecCCeE
Q 024676           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDA--LTGDEKHSFEHKHIV  105 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~--~~~~~~~~~~~~~~v  105 (264)
                      |++.++++++.|++|.+||..+++.+.++. +|.  ++.++|+||++++++++.|++|++||+  .+++.+..+.+...+
T Consensus       147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p  224 (543)
T 1nir_A          147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA  224 (543)
T ss_dssp             GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred             CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc
Confidence            488999999999999999999999999998 454  899999999999999999999999999  888888888887888


Q ss_pred             EEEEECC----CCCEEEEeeC-CCcEEEeeCCCCCCCCeEec----------cCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676          106 RACAFSE----DTHLLLTGGF-EKILRIFDLNRPDAPPREVG----------NSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus       106 ~~~~~~~----~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ..++++|    +++++++++. ++++.+||..+.+.......          +....+..+.+++++..++++...+++|
T Consensus       225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i  304 (543)
T 1nir_A          225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  304 (543)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence            9999999    9999999884 89999999887654332221          1123678888999888888888899999


Q ss_pred             EEEECCCCceeE--EecCCCCEEEEEEcCCCcEEE-EeC-CCcEEEEECCCceeeeEEecCCC--C-ceee-EcCCCCCE
Q 024676          171 RLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYIT-TAD-GSSVKFWDANHFGLVKGYNMPCN--T-ESAS-LEPKLGNI  242 (264)
Q Consensus       171 ~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~-~~~-~~~i~iwd~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~  242 (264)
                      .+||+.+.+.+.  .+.....+..+.|+|+|+++. ++. +++|.+||..+++++..+.....  + .... +.|+++.+
T Consensus       305 ~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~  384 (543)
T 1nir_A          305 LLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPV  384 (543)
T ss_dssp             EEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEE
T ss_pred             EEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccE
Confidence            999999876544  445555677899999998654 443 68999999999999888875321  1 1222 35655788


Q ss_pred             EEEec-CCCeEEEEEcCc
Q 024676          243 FIAGG-EDMWVHVFDFHT  259 (264)
Q Consensus       243 ~~~gs-~d~~v~vwd~~~  259 (264)
                      +++++ .|++|.+||+++
T Consensus       385 ~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          385 WSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EEEEBSSSSEEEEEECCT
T ss_pred             EEeccCCCceEEEEEeCC
Confidence            88876 689999999987

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=4.4e-24  Score=176.68  Aligned_cols=243  Identities=12%  Similarity=0.045  Sum_probs=182.0

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeC-CCCcEEEeCCCCce-EEeeeCCcCCEEEEEECCCCcEEEEecCCC---eEEEE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANALFSASGSADF---TAKLW   88 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~-d~~v~i~~~~~~~~-~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~---~v~iw   88 (264)
                      .+..++ .++|+|   +|++|++++. ++.+.+||..+++. ...+..+..+..+++|+|++.+++++..++   .|++|
T Consensus        38 ~~~~~~-~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           38 LGYDFV-DTAITS---DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             CCCCEE-EEEECS---SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred             ccCCcc-eEEEcC---CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence            345555 899986   8886666655 88999999999987 777777777776699999999988655553   99999


Q ss_pred             eCCCCcEEEEeecCCeEEEEEECCCCCEEEEe-eCCCc-EEEeeCCCCCCCC---eEeccCCCCeEEEEEecCCCeEEEE
Q 024676           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKI-LRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~-i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      |+.+++.+..+........++|+|++++++++ ..++. +.+|+++......   ............++|+|++..++++
T Consensus       114 d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          114 SFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             ETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred             ECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence            99999888888777777999999999866555 55588 9999987533221   1111234457889999988878888


Q ss_pred             eeCCCeEEEEECCCCce---eEEecCCCCEEEEEEcCCCcEEEEe--CCCcEEEEECCCcee--eeEEecC----CCC--
Q 024676          164 CTDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGL--VKGYNMP----CNT--  230 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~--~~~~~~~----~~~--  230 (264)
                      +..++.|.+||+++++.   +..+.....+..++++|+|+++..+  .++.|.+||+.+++.  +..+...    ...  
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF  273 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred             eCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc
Confidence            77789999999999988   7777766778889999999966443  356899999998876  4444322    111  


Q ss_pred             --ceeeEcCCCCCE-EEEecCCCeEEEEEcCcce
Q 024676          231 --ESASLEPKLGNI-FIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       231 --~~~~~~~~~~~~-~~~gs~d~~v~vwd~~~g~  261 (264)
                        ..+.+.|+ +++ +++++.++.|++||+.+.+
T Consensus       274 ~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          274 GANQMALNKT-ETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             TCCCEEECTT-SSEEEEEETTTTEEEEEETTSCE
T ss_pred             cccceEECCC-CCEEEEecCCCCcEEEEEecCCc
Confidence              22477775 555 4566667899999987543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.2e-23  Score=172.66  Aligned_cols=244  Identities=14%  Similarity=0.133  Sum_probs=175.3

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCC-CCcEEEeCC--CCce--EEeeeCCcCCEEEEEECCCCcEEEE-ecCCCeEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKD-SSPMLRNGE--TGDW--IGTFEGHKGAVWSCCLDANALFSAS-GSADFTAK   86 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d-~~v~i~~~~--~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s-~s~D~~v~   86 (264)
                      ..|...+.+++|+|   +|++|++++.+ +.+.+|++.  +++.  +..+..+. .+..++|+|++.++++ +..++.|+
T Consensus        34 ~~~~~~~~~~~~sp---dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           34 VDVPGQVQPMVVSP---DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             EECSSCCCCEEECT---TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             EecCCCCceEEECC---CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEE
Confidence            45778888999996   89988888887 899999987  5553  44555544 7788999999997755 45589999


Q ss_pred             EEeCC---CCcEEEEeecCCeEEEEEECCCCCEEEEee-CCCcEEEeeCCC-CCCCC----eEeccCCCCeEEEEEecCC
Q 024676           87 LWDAL---TGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNR-PDAPP----REVGNSSGSIRTVAWLHSD  157 (264)
Q Consensus        87 iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~-~~~~~----~~~~~~~~~i~~~~~~~~~  157 (264)
                      +||+.   .......+.....+..++|+|+++.+++++ .++.+++||+.+ ++...    .........+..++|.|++
T Consensus       110 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg  189 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  189 (343)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             EEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence            99994   333444455555688899999999888877 889999999976 43211    1112233467789999988


Q ss_pred             CeEEEEeeCCCeEEEEECCC--Cce--eEEec---C----CCCEEEEEEcCCCcEEE-Ee-CCCcEEEEECC----Ccee
Q 024676          158 QTILSSCTDSGGVRLWDARS--GKI--VQTLE---T----KSPVTSAEVSRDGRYIT-TA-DGSSVKFWDAN----HFGL  220 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~--~~~--~~~~~---~----~~~v~~~~~s~~~~~l~-~~-~~~~i~iwd~~----~~~~  220 (264)
                      ..+++++..++.|++||++.  ++.  .....   .    ...+..++|+|+++++. +. .++.|.+||+.    +.+.
T Consensus       190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~  269 (343)
T 1ri6_A          190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  269 (343)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence            87777776789999999953  433  22221   1    23467899999998664 44 46899999998    3455


Q ss_pred             eeEEecCCCCceeeEcCCCCCEEEEec-CCCeEEEEE--cCcce
Q 024676          221 VKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFD--FHTGE  261 (264)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~v~vwd--~~~g~  261 (264)
                      +..+.....+..+.+.++ ++++++++ .|+.|++|+  ..+|+
T Consensus       270 ~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          270 EGFQPTETQPRGFNVDHS-GKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             EEEEECSSSCCCEEECTT-SSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             eeeecCCCccceEEECCC-CCEEEEecCCCCeEEEEEEcCCCce
Confidence            555655555667788885 66555555 789999994  44664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=3.2e-23  Score=183.26  Aligned_cols=238  Identities=12%  Similarity=0.086  Sum_probs=184.4

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeC--CCCceEEeeeCCcCCEEEEEECC----CCcEEEEec-CCCeEEEEeCC
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNG--ETGDWIGTFEGHKGAVWSCCLDA----NALFSASGS-ADFTAKLWDAL   91 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~--~~~~~~~~~~~H~~~V~~v~~~~----~~~~l~s~s-~D~~v~iwd~~   91 (264)
                      +..++|+|   ||++|++++.|+.|++||.  .+++.+.++.. ...++.++|+|    |++++++++ .+++|.+||..
T Consensus       181 ~~~v~~sp---dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          181 VHISRMSA---SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             EEEEEECT---TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             cceEEECC---CCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            77888986   9999999999999999999  88888888884 45679999999    999988877 58999999999


Q ss_pred             CCcEEEEeec-----------CC-eEEEEEECCCCCEE-EEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           92 TGDEKHSFEH-----------KH-IVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        92 ~~~~~~~~~~-----------~~-~v~~~~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      +++++..+..           .. .+..+.++|+++.+ ++...++.|.+||..+.+........+...+..+.|.|++.
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence            9988877652           22 58889999976554 55667899999999765443211212344567788999888


Q ss_pred             eEEEEeeCCCeEEEEECCCCceeEEecC----C-CCEEEEEEcCC-CcEEEEe--CCCcEEEEECCC-------ceeeeE
Q 024676          159 TILSSCTDSGGVRLWDARSGKIVQTLET----K-SPVTSAEVSRD-GRYITTA--DGSSVKFWDANH-------FGLVKG  223 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~-~~v~~~~~s~~-~~~l~~~--~~~~i~iwd~~~-------~~~~~~  223 (264)
                      ++++++..+++|.+||+++++++..+..    + .....+ ++|+ +.+++++  .+++|.+||+.+       ++++++
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            8888887789999999999998877653    1 122233 5777 5666665  368999999988       889999


Q ss_pred             EecCCC-CceeeEcCCCCCEEEEec-------CCCeEEEEEcCccee
Q 024676          224 YNMPCN-TESASLEPKLGNIFIAGG-------EDMWVHVFDFHTGEQ  262 (264)
Q Consensus       224 ~~~~~~-~~~~~~~~~~~~~~~~gs-------~d~~v~vwd~~~g~~  262 (264)
                      +..+.. ...+.++| ++++|++++       .+++|.+||+.+++.
T Consensus       416 l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          416 LQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             EECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             EEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence            987643 34566666 588888876       377999999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=3.3e-23  Score=171.17  Aligned_cols=225  Identities=13%  Similarity=0.122  Sum_probs=175.2

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeeeC-CcC-CEEEEEECCCCcE-EEEecCCCeEEEEeCCCCcEEEEeecCC-----
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFEG-HKG-AVWSCCLDANALF-SASGSADFTAKLWDALTGDEKHSFEHKH-----  103 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~-H~~-~V~~v~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~-----  103 (264)
                      ++|++++.++.+.+||..+++.+..+.. +.. .+..++|+|++.+ +++++.++.|.+||+.+++....+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            5789999999999999999998887763 322 4788999999965 4677788999999999998777665433     


Q ss_pred             -eEEEEEECCCCCEEEEee------------CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676          104 -IVRACAFSEDTHLLLTGG------------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus       104 -~v~~~~~~~~~~~l~s~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                       .+..++|+|+++.++++.            .++.|.+||+.+++... ... ....+..++|+|++..++++   ++.|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~-~~~~~~~~~~s~dg~~l~~~---~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFE-APRQITMLAWARDGSKLYGL---GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEE-CCSSCCCEEECTTSSCEEEE---SSSE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE-EEe-CCCCcceeEECCCCCEEEEe---CCeE
Confidence             566789999999988886            57999999997654322 222 23456678888887766655   4789


Q ss_pred             EEEECCCCceeEEecCC---------------------------------------------------------------
Q 024676          171 RLWDARSGKIVQTLETK---------------------------------------------------------------  187 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~---------------------------------------------------------------  187 (264)
                      .+||+++++.+..+...                                                               
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  236 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence            99999988765444221                                                               


Q ss_pred             ----CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          188 ----SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       188 ----~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                          ..+..++++|+++++..+ ++.|.+||+.+++.+..+.....+..+.+.++ ++++++++.|+.|++||+.+++.+
T Consensus       237 ~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          237 RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTT-SCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceeeEEECCC-CCEEEEEcCCCcEEEEECcCCcEE
Confidence                123458999999887766 68999999999998888887767777888885 777777888999999999988765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=2.9e-23  Score=172.45  Aligned_cols=229  Identities=11%  Similarity=0.023  Sum_probs=175.9

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCc-CCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCC---
Q 024676           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKH---  103 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~-~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~---  103 (264)
                      ++++++++++.++.|.+||..+++.++.+..+. ..+..++|+|+++++ ++++.++.|.+||+.+++....+....   
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~   88 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   88 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence            478899999999999999999999888887553 256789999999754 667789999999999988776665322   


Q ss_pred             ----eEEEEEECCCCCEEEEeeCC------------CcEEEeeCCCCCCCC-eEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676          104 ----IVRACAFSEDTHLLLTGGFE------------KILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus       104 ----~v~~~~~~~~~~~l~s~~~d------------~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                          .+..++|+|+++++++++.+            +.+.+||+.+++... .........+.+++|++++. +++. + 
T Consensus        89 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~-  165 (349)
T 1jmx_B           89 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-G-  165 (349)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-S-
T ss_pred             cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc-c-
Confidence                26788999999999998865            899999997643211 11122333577788888777 5553 3 


Q ss_pred             CCeEEEEECCCCceeEEecCCC----------------------------------------------------------
Q 024676          167 SGGVRLWDARSGKIVQTLETKS----------------------------------------------------------  188 (264)
Q Consensus       167 d~~v~iwd~~~~~~~~~~~~~~----------------------------------------------------------  188 (264)
                       +.|.+||+++++.+..+....                                                          
T Consensus       166 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  244 (349)
T 1jmx_B          166 -PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  244 (349)
T ss_dssp             -SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             -CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc
Confidence             349999999988776554221                                                          


Q ss_pred             -----------CEEEEEEcC-CCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          189 -----------PVTSAEVSR-DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       189 -----------~v~~~~~s~-~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                                 .+..++++| +++++..+ ++.|.+||+.+++.++.+.....+..+.++++ +++|++++.++.|++||
T Consensus       245 ~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~v~v~d  322 (349)
T 1jmx_B          245 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFN  322 (349)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSS-SSCEEEESBSSEEEEEE
T ss_pred             EEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccceEECCC-CCEEEEecCCCeEEEEe
Confidence                       234567789 99887766 78999999999998888877666777888875 66666678899999999


Q ss_pred             cCcceee
Q 024676          257 FHTGEQI  263 (264)
Q Consensus       257 ~~~g~~i  263 (264)
                      +++++.+
T Consensus       323 ~~~~~~~  329 (349)
T 1jmx_B          323 PDTLEKV  329 (349)
T ss_dssp             TTTTEEE
T ss_pred             cccccee
Confidence            9998865

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=7.6e-23  Score=175.23  Aligned_cols=222  Identities=10%  Similarity=0.075  Sum_probs=169.7

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEE-EecCCCe
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFT   84 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~-s~s~D~~   84 (264)
                      +..+.+|...|.+++|+|   ||++|++++.|+   .+++||+.+++.. .+..|.+.+.+++|+||+++++ +++.|+.
T Consensus       171 ~~~l~~~~~~v~~~~~Sp---dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~  246 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGS  246 (415)
T ss_dssp             CEEEEEESSCEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CEEEeCCCCcceeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence            455678999999999996   999999999886   8999999998865 5777888999999999999877 7776654


Q ss_pred             --EEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeC-CC--cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCe
Q 024676           85 --AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        85 --v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  159 (264)
                        |++||+.+++......+...+..+.|+|+++.|++++. ++  .|.+||+.+++.  ..+..+...+..++|+|++..
T Consensus       247 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          247 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSSDGKF  324 (415)
T ss_dssp             CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--EECCCSSSEEEEEEECTTSSE
T ss_pred             ceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE--EEEecCCCcccCeEECCCCCE
Confidence              99999998877555567788999999999999888876 44  577778876542  333345567888999998887


Q ss_pred             EEEEeeCC--CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCC---cEEEEECCCceeeeEEecC-CCCce
Q 024676          160 ILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGS---SVKFWDANHFGLVKGYNMP-CNTES  232 (264)
Q Consensus       160 ~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~---~i~iwd~~~~~~~~~~~~~-~~~~~  232 (264)
                      ++.++.++  ..|.+||+++++.. .+..+..+.+++|+|||++|+. +.++   .|.+||+.... .+.+..+ .....
T Consensus       325 l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~  402 (415)
T 2hqs_A          325 MVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKF  402 (415)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEE
T ss_pred             EEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcC
Confidence            77666553  48999999998874 3443347899999999987654 3333   79999987443 4444433 33455


Q ss_pred             eeEcCC
Q 024676          233 ASLEPK  238 (264)
Q Consensus       233 ~~~~~~  238 (264)
                      .+|.|.
T Consensus       403 ~~~~~~  408 (415)
T 2hqs_A          403 PAWSPY  408 (415)
T ss_dssp             EEECCC
T ss_pred             Cccccc
Confidence            667664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=3.1e-22  Score=165.55  Aligned_cols=229  Identities=9%  Similarity=0.058  Sum_probs=174.5

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEE-ecCCCeEEEEeCCCCcE-EEEeecCCeEEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSAS-GSADFTAKLWDALTGDE-KHSFEHKHIVRA  107 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s-~s~D~~v~iwd~~~~~~-~~~~~~~~~v~~  107 (264)
                      .+..+++++.++.|.+||..+++.+..+..+...+ .++|+|++++++. +..++.|.+||..++.. ...+........
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA   87 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc
Confidence            45668899999999999999999888877666667 9999999986654 45589999999998876 555554444444


Q ss_pred             -EEECCCCCEEEEeeCCC---cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe-EEEEECCCCcee-
Q 024676          108 -CAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIV-  181 (264)
Q Consensus       108 -~~~~~~~~~l~s~~~d~---~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~-v~iwd~~~~~~~-  181 (264)
                       ++++|++++++++..++   .|.+||+++++... .. ........++|+|++..+++++..++. |.+|++.....+ 
T Consensus        88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~-~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~  165 (331)
T 3u4y_A           88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS-TI-PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF  165 (331)
T ss_dssp             CEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE-EE-ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             ceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE-EE-ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence             99999999999555553   89999998765432 22 234456889999988878888777778 999998764332 


Q ss_pred             ----EEecCCCCEEEEEEcCCCcEE-EEe-CCCcEEEEECCCcee---eeEEecCCCCceeeEcCCCCC-EEEEecCCCe
Q 024676          182 ----QTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGL---VKGYNMPCNTESASLEPKLGN-IFIAGGEDMW  251 (264)
Q Consensus       182 ----~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~gs~d~~  251 (264)
                          ..+.....+..++++|+|+++ ++. .++.|++||+.+++.   +..+.....+..+.++|+ ++ ++++...++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~  244 (331)
T 3u4y_A          166 DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRD-GSTVYVLTESTVD  244 (331)
T ss_dssp             EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTT-SSEEEEECSSEEE
T ss_pred             ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCC-CCEEEEEEcCCCE
Confidence                223344568899999999854 444 368999999998887   777777666777888885 66 5556667889


Q ss_pred             EEEEEcCccee
Q 024676          252 VHVFDFHTGEQ  262 (264)
Q Consensus       252 v~vwd~~~g~~  262 (264)
                      |.+||..+|+.
T Consensus       245 i~~~d~~~~~~  255 (331)
T 3u4y_A          245 VFNFNQLSGTL  255 (331)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCce
Confidence            99999998876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=6.7e-23  Score=165.82  Aligned_cols=235  Identities=12%  Similarity=0.088  Sum_probs=171.4

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEEeeeCC-cCCEEEEEECCCCcEEEEec--CCCeE
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGH-KGAVWSCCLDANALFSASGS--ADFTA   85 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~~~~~H-~~~V~~v~~~~~~~~l~s~s--~D~~v   85 (264)
                      ..+..|...|.+++|+|   +|++|++++ ++.+.+|+..+ ++....+.+| ...|.+++|+|+++++++++  .++..
T Consensus        35 ~~~~~~~~~v~~~~~sp---dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  110 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSP---DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKS  110 (297)
T ss_dssp             EEEEEESSCCEEEEECT---TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred             eeeccCCcceEeeEECC---CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence            34567899999999996   899999887 78999999999 8877777666 47788999999999999888  44556


Q ss_pred             EEEeC--CCCcEEEEeecCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           86 KLWDA--LTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        86 ~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      +||.+  .++. ...+.....+..++|+|+++.++ ++..++.+++|+++...........+...+..++|+|++..+++
T Consensus       111 ~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          111 AIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             EEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEE
Confidence            66654  4444 34444445688899999999877 77889999999864332233444556678899999998887777


Q ss_pred             EeeCCCeEEEEECC-CCceeEEecC-CCCEEEEEEcCCCcEEEEe-CC-----------CcEEEEECCCceeeeEEe---
Q 024676          163 SCTDSGGVRLWDAR-SGKIVQTLET-KSPVTSAEVSRDGRYITTA-DG-----------SSVKFWDANHFGLVKGYN---  225 (264)
Q Consensus       163 ~~~~d~~v~iwd~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~-----------~~i~iwd~~~~~~~~~~~---  225 (264)
                      ++..++.++||+++ .+.....+.. ...+..+.|+|++++|+.+ .+           ..|.+||+.+++......   
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  269 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG  269 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE
T ss_pred             EecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC
Confidence            76667899999886 4444555543 3468889999999876543 22           459999998875433332   


Q ss_pred             cCCCCceeeEcCCCCCEEEEecCCC
Q 024676          226 MPCNTESASLEPKLGNIFIAGGEDM  250 (264)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~gs~d~  250 (264)
                      .......+.+.|+ ++.|++++.|.
T Consensus       270 ~~~~~~~~~~spd-g~~l~~~~~~~  293 (297)
T 2ojh_A          270 GQGTMNSPNWSPD-GDEFAYVRYFP  293 (297)
T ss_dssp             STTTSCSCCBCTT-SSEEEEEEECC
T ss_pred             CCcccccceECCC-CCEEEEEEecc
Confidence            2334556677774 77777776653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.5e-21  Score=162.48  Aligned_cols=242  Identities=12%  Similarity=0.102  Sum_probs=183.6

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeC-------CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEE
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASK-------DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAK   86 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~-------d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~   86 (264)
                      ....+..++|+|   +|++|++++.       ++.+.+||..+++.+..+... ..+..++|++++.+ +++...++.|.
T Consensus        39 ~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQ---QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEET---TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred             hccCccceEECC---CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEE
Confidence            345677899996   8888877774       567999999999988777643 34678899999985 46677789999


Q ss_pred             EEeCCCCcEEEEeecCC----------eEEEEEECCCCCEEEEee--CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEe
Q 024676           87 LWDALTGDEKHSFEHKH----------IVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (264)
Q Consensus        87 iwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~  154 (264)
                      +||..+++.+..+....          .+..+.++|+++.++++.  .++.|.+||+++++.. .........+..++++
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~s  193 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK-TAIQNTGKMSTGLALD  193 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-EEECCCCTTCCCCEEE
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-EEecCCCCccceEEEC
Confidence            99999998877765422          268899999999888776  4788999999876543 2222233446778889


Q ss_pred             cCCCeEEEEeeCCCeEEEEECCCCceeEEecC-----CCCEEEEEEcCCCcEEE-EeC-CCcEEEEECCCceeeeEEecC
Q 024676          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYIT-TAD-GSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~-~~~-~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      +++..++++ ..++.|.+||+++++.+..+..     ...+..++++|+++++. +.. ++.|.+||..+++.+..+..+
T Consensus       194 ~dg~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  272 (353)
T 3vgz_A          194 SEGKRLYTT-NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP  272 (353)
T ss_dssp             TTTTEEEEE-CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred             CCCCEEEEE-cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            887766655 4578999999999998776643     33477899999998654 443 479999999999988888765


Q ss_pred             CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .. ..+.+.++...++++...++.|.+||..+++.+
T Consensus       273 ~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          273 ES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             SC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            43 457777754446677778999999999988764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.1e-21  Score=163.66  Aligned_cols=244  Identities=11%  Similarity=0.129  Sum_probs=168.8

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeC---CCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEec-CCCeEEE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKL   87 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~---d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s-~D~~v~i   87 (264)
                      ++...+..++|+|   ||+ |++++.   ++.+.+|++.+++  .+..+..|...+..++|+|+++++++++ .++++++
T Consensus        37 ~~~~~p~~~a~sp---dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           37 AATQNPTYLALSA---KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV  112 (347)
T ss_dssp             EECSCCCCEEECT---TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eccCCcceEEEcc---CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence            4556667799986   888 555554   6899999997776  3455556777888999999999887766 7899999


Q ss_pred             EeCCC-Cc--EEEEeecC----------CeEEEEEECCCCCEEEEeeCCCcEEEeeCC-CCCCCCe-E-eccCCCCeEEE
Q 024676           88 WDALT-GD--EKHSFEHK----------HIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDAPPR-E-VGNSSGSIRTV  151 (264)
Q Consensus        88 wd~~~-~~--~~~~~~~~----------~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~-~~~~~~~-~-~~~~~~~i~~~  151 (264)
                      |++.. +.  .+..+.+.          ..+..++|+|+++++++...++.+++|++. .++.... . ..........+
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence            99853 33  22233221          237889999999966666678899999997 3332111 1 11223356778


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCC--Cce--eEEecC-------CCCEEEEEEcCCCcEE-EEe-CCCcEEEEECCC-
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARS--GKI--VQTLET-------KSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANH-  217 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~--~~~~~~-------~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~-  217 (264)
                      +|+|++..+++++..++.|.+|+++.  ++.  +..+..       ...+..++|+|||+++ ++. .++.|.+||+.. 
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            99998887777777789999999874  543  222221       1348889999999876 443 468999999973 


Q ss_pred             --ceeeeEEec-CCCCceeeEcCCCCCEEEEec-CCCeEEEE--EcCccee
Q 024676          218 --FGLVKGYNM-PCNTESASLEPKLGNIFIAGG-EDMWVHVF--DFHTGEQ  262 (264)
Q Consensus       218 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs-~d~~v~vw--d~~~g~~  262 (264)
                        .+.+..+.. ...+..++++|+ +++|++++ .++.|.+|  |..+|+.
T Consensus       273 g~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          273 GHLTLIQQISTEGDFPRDFDLDPT-EAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             GCEEEEEEEECSSSCCCEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CcEEEeEEEecCCCCcCeEEECCC-CCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence              344555554 334667888875 66666555 55999999  5556664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=4.1e-22  Score=161.18  Aligned_cols=224  Identities=13%  Similarity=0.053  Sum_probs=160.4

Q ss_pred             EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC-CcEEEEeec--CCeEEEEEEC
Q 024676           35 VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDEKHSFEH--KHIVRACAFS  111 (264)
Q Consensus        35 ~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~--~~~v~~~~~~  111 (264)
                      ..++.|+.+++||..+++.. .+..|.+.|.+++|+|++.++++++ ++.|++||+.+ ++.......  ...+..++|+
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CCCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            34578899999999988765 4556889999999999999998876 78999999998 776655532  3567889999


Q ss_pred             CCCCEEEEee--CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC--CCCceeEEecCC
Q 024676          112 EDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA--RSGKIVQTLETK  187 (264)
Q Consensus       112 ~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~--~~~~~~~~~~~~  187 (264)
                      |+++++++++  .++..++|.++........+.. ...+..++|+|++..++.++..++.++||++  .+++........
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence            9999999988  3345666654322222333332 3347888999988877767777899999985  445543333455


Q ss_pred             CCEEEEEEcCCCcEEEE-e-CCCcEEEEECC-CceeeeEEecCC-CCceeeEcCCCCCEEEEecCC-----------CeE
Q 024676          188 SPVTSAEVSRDGRYITT-A-DGSSVKFWDAN-HFGLVKGYNMPC-NTESASLEPKLGNIFIAGGED-----------MWV  252 (264)
Q Consensus       188 ~~v~~~~~s~~~~~l~~-~-~~~~i~iwd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d-----------~~v  252 (264)
                      ..+.++.|+|++++++. + .++.+++|++. ....+..+..+. ......+.| ++++|++++.+           ..|
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEE
Confidence            67999999999987654 4 36789999875 344444443322 233456777 58888877765           679


Q ss_pred             EEEEcCccee
Q 024676          253 HVFDFHTGEQ  262 (264)
Q Consensus       253 ~vwd~~~g~~  262 (264)
                      ++||+.+++.
T Consensus       252 ~~~d~~~~~~  261 (297)
T 2ojh_A          252 QLMDMDGGNV  261 (297)
T ss_dssp             EEEETTSCSC
T ss_pred             EEEecCCCCc
Confidence            9999987754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=2.2e-22  Score=183.84  Aligned_cols=235  Identities=10%  Similarity=-0.001  Sum_probs=175.5

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeC-CC-----CcEEEeCCCCceEEeeeCCcC------------------------CEE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASK-DS-----SPMLRNGETGDWIGTFEGHKG------------------------AVW   65 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~-d~-----~v~i~~~~~~~~~~~~~~H~~------------------------~V~   65 (264)
                      ...+..++|+|   ||++|++++. |+     .+++||..+++....+..|..                        .|.
T Consensus        36 ~~~~~~~~~Sp---dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAP---DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECT---TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEec---CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            44688999996   9999999998 88     899999999987766665543                        378


Q ss_pred             EEEECCCCcEEEEecCCCeEEEEeCCCC---cEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676           66 SCCLDANALFSASGSADFTAKLWDALTG---DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        66 ~v~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (264)
                      +++|+||++++++++. +.|++||+.++   .......+...+..++|+|+++.|+.++ ++.|++||+.+++..... .
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~-~  189 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT-A  189 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC-C
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec-c
Confidence            8999999999988876 89999999988   6555555677899999999999998887 468999999765422111 1


Q ss_pred             cCCC----------------CeEEEEEecCCCeEEEEeeCCC--------------------------------eEEEEE
Q 024676          143 NSSG----------------SIRTVAWLHSDQTILSSCTDSG--------------------------------GVRLWD  174 (264)
Q Consensus       143 ~~~~----------------~i~~~~~~~~~~~~~~~~~~d~--------------------------------~v~iwd  174 (264)
                      ....                .+..++|+|++..++.+..+.+                                .|.+||
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            1111                1366889998887766654422                                789999


Q ss_pred             CCC-CceeEEec---CCCCEEEEEEcCCCcEEEEeC------CCcEEEEECCCceeeeEEecCC-----CCceeeEcCCC
Q 024676          175 ARS-GKIVQTLE---TKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPC-----NTESASLEPKL  239 (264)
Q Consensus       175 ~~~-~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~------~~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~  239 (264)
                      +.+ ++......   +...+..++| |||++|+...      +..|.+||+.+++....+..+.     ......++++ 
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd-  347 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD-  347 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT-
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC-
Confidence            998 87654332   3346889999 9999876431      3479999999887765554332     2235677774 


Q ss_pred             CCEEEEecCCCeEEEEEcC
Q 024676          240 GNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       240 ~~~~~~gs~d~~v~vwd~~  258 (264)
                      |+++++++.|+.+++|.++
T Consensus       348 g~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             SCEEEEECTTSSCEEEEEC
T ss_pred             CeEEEEecCCCccEEEEEc
Confidence            7788999999988888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=7.1e-21  Score=158.38  Aligned_cols=227  Identities=13%  Similarity=0.115  Sum_probs=176.1

Q ss_pred             CCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeCCCCceEEeeeCCcCC---------EEEEEECCCCcEEEEec--CCCe
Q 024676           17 RPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGA---------VWSCCLDANALFSASGS--ADFT   84 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~---------V~~v~~~~~~~~l~s~s--~D~~   84 (264)
                      ..+.++.|+|   +|+ .+++...++.+.+||..+++.+..+..+...         +..++|+|++.+++.++  .++.
T Consensus        89 ~~~~~~~~s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  165 (353)
T 3vgz_A           89 LKPFGATINN---TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV  165 (353)
T ss_dssp             SCCCSEEEET---TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE
T ss_pred             CCcceEEECC---CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce
Confidence            3466788886   777 4455666899999999999988888765432         68899999998766554  5889


Q ss_pred             EEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec---cCCCCeEEEEEecCCCeE
Q 024676           85 AKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        85 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~  160 (264)
                      |.+||..+++....+. +...+..+.|+|+++.+++++.++.+.+||+.+++.......   .+......+++.|++..+
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  245 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA  245 (353)
T ss_dssp             EEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred             EEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence            9999999998888877 555678899999999999999999999999987654333222   134456778999988888


Q ss_pred             EEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCC
Q 024676          161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPK  238 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  238 (264)
                      ++++..++.|.+||+++++.+..+....+ ..++++|+++++ ++. .++.|.+||..+++.+..+.....+..+.+.++
T Consensus       246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d  324 (353)
T 3vgz_A          246 FITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSAD  324 (353)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTT
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCC
Confidence            88777779999999999998877765444 568999999854 444 468999999999999888887767777888875


Q ss_pred             CCC-EEEEecC
Q 024676          239 LGN-IFIAGGE  248 (264)
Q Consensus       239 ~~~-~~~~gs~  248 (264)
                       ++ ++++...
T Consensus       325 -g~~l~v~~~~  334 (353)
T 3vgz_A          325 -GKTLYVSVKQ  334 (353)
T ss_dssp             -SCEEEEEEEC
T ss_pred             -CCEEEEEEcc
Confidence             55 4444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=9e-22  Score=179.77  Aligned_cols=234  Identities=11%  Similarity=0.077  Sum_probs=168.1

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      .|..++|+|   ||++|++++. +.+++|++.+++  ....+..|...+..++|+||+++++.++ ++.|++||+.+++.
T Consensus       110 ~v~~~~~Sp---Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSP---DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECT---TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECC---CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence            378899986   9999999887 899999999883  3456777888999999999999998887 56899999988865


Q ss_pred             EEEeec-CCe----------------EEEEEECCCCCEEEEeeCCC---------------------------------c
Q 024676           96 KHSFEH-KHI----------------VRACAFSEDTHLLLTGGFEK---------------------------------I  125 (264)
Q Consensus        96 ~~~~~~-~~~----------------v~~~~~~~~~~~l~s~~~d~---------------------------------~  125 (264)
                      ...... ...                +..+.|+|+++.|++++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            544332 221                36789999999999987765                                 7


Q ss_pred             EEEeeCCC-CCCCCeEec-cCCCCeEEEEEecCCCeEEEEee----CCCeEEEEECCCCceeEEecCCC-----CEEEEE
Q 024676          126 LRIFDLNR-PDAPPREVG-NSSGSIRTVAWLHSDQTILSSCT----DSGGVRLWDARSGKIVQTLETKS-----PVTSAE  194 (264)
Q Consensus       126 i~~~d~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~----~d~~v~iwd~~~~~~~~~~~~~~-----~v~~~~  194 (264)
                      |.+||+.+ ++....... .+...+..++| |++..+++++.    .+..|.+||++++++...+....     .+..+.
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence            88899877 653221111 35567889999 98887776654    34689999999998766554322     345789


Q ss_pred             EcCCCcEEEEe-CCCcEEEEECC-CceeeeEEecCCC-Ccee-eEcCCCCC-EEEEecCCC--eEEEEEcCc
Q 024676          195 VSRDGRYITTA-DGSSVKFWDAN-HFGLVKGYNMPCN-TESA-SLEPKLGN-IFIAGGEDM--WVHVFDFHT  259 (264)
Q Consensus       195 ~s~~~~~l~~~-~~~~i~iwd~~-~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~gs~d~--~v~vwd~~~  259 (264)
                      |+|||++++++ .++.++||.+. .++ ...+..+.. .... .++++ ++ ++++++.|+  .+++|++..
T Consensus       344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~d-g~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEK-AGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETT-TTEEEEEECSSCTTCBEEEEEET
T ss_pred             ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCC-CCEEEEEEeCCCCceEEEEEEEc
Confidence            99999977655 46777777665 233 444433322 2233 46775 55 445666666  899998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=9.8e-22  Score=178.98  Aligned_cols=237  Identities=11%  Similarity=-0.025  Sum_probs=168.4

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcC---CEEEEEECCCCcEEEEecCC---------CeE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSAD---------FTA   85 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~---~V~~v~~~~~~~~l~s~s~D---------~~v   85 (264)
                      .+..++|+|   ||+++++ +.|+++++||..+++....+.+|..   .|.+++|+||++++++++.+         +.+
T Consensus        18 ~~~~~~~sp---dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWIS---DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSS---SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcC---CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            356788886   8997766 7899999999999988878887765   48999999999999988765         778


Q ss_pred             EEEeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCC----------------
Q 024676           86 KLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----------------  146 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~----------------  146 (264)
                      .+||+.+++......   +...+..++|+|+++.|+.++. +.|++||+.+++...... .+..                
T Consensus        94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTT
T ss_pred             EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEe
Confidence            899999887522222   2234788999999999998876 789999998765432221 1122                


Q ss_pred             --CeEEEEEecCCCeEEEEeeCC---------------------------------CeEEEEECCCCceeEEecC-----
Q 024676          147 --SIRTVAWLHSDQTILSSCTDS---------------------------------GGVRLWDARSGKIVQTLET-----  186 (264)
Q Consensus       147 --~i~~~~~~~~~~~~~~~~~~d---------------------------------~~v~iwd~~~~~~~~~~~~-----  186 (264)
                        .+..++|+|++..++.+..++                                 ..|++||+.+++....+..     
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence              236799999887766654332                                 1799999999886555543     


Q ss_pred             --CCCEEEEEEcCCCcEEEEe-C----CCcEEEEECCCceeeeEEecC--CCC----ceeeEcCCCCCEEE-E-ecCCC-
Q 024676          187 --KSPVTSAEVSRDGRYITTA-D----GSSVKFWDANHFGLVKGYNMP--CNT----ESASLEPKLGNIFI-A-GGEDM-  250 (264)
Q Consensus       187 --~~~v~~~~~s~~~~~l~~~-~----~~~i~iwd~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~-~-gs~d~-  250 (264)
                        ...+..+.|||||++++.. .    +..|++||+.+++....+...  ...    ....|+|+ |+.|+ . +..|+ 
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~  330 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD-GRKFFFIRAIPQGG  330 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT-SCSEEEEEEECCSS
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC-CCeEEEEEecccCC
Confidence              3458899999999987543 2    247999999988766554332  111    25678875 55444 3 55677 


Q ss_pred             -----eEEEEE-cCcce
Q 024676          251 -----WVHVFD-FHTGE  261 (264)
Q Consensus       251 -----~v~vwd-~~~g~  261 (264)
                           .|++|| ..+++
T Consensus       331 ~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          331 RGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             SSCEEEEEEECSSCCSS
T ss_pred             CcceeEEEEEeccCCCC
Confidence                 566677 34443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.5e-21  Score=168.15  Aligned_cols=197  Identities=9%  Similarity=-0.009  Sum_probs=144.3

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC--------C--ceEEe-----eeCCcCCEEEEEECCCCcEEE--
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------G--DWIGT-----FEGHKGAVWSCCLDANALFSA--   77 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~--------~--~~~~~-----~~~H~~~V~~v~~~~~~~~l~--   77 (264)
                      ....++.|++++   ++.+|++++.|+ +++|+...        .  ..+..     .-.|.+.|.+++|++++.+++  
T Consensus        35 ~~~~~n~lavs~---~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~  110 (434)
T 2oit_A           35 PKERSSLLAVSN---KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC  110 (434)
T ss_dssp             CCSCCBCEEEET---TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             CCCCccEEEEec---CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence            344578888886   677889999888 78875321        0  01111     123567899999999999998  


Q ss_pred             --EecCCCeEEEEeCCCC--------cEE---EEe-ecCCeEEEEEECCC-CCEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676           78 --SGSADFTAKLWDALTG--------DEK---HSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        78 --s~s~D~~v~iwd~~~~--------~~~---~~~-~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (264)
                        +|+.|++|+|||+.++        +.+   ..+ .|...|.+++|+|+ +++|++++.|+++++||++++... ....
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~  189 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATL  189 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEE
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eecc
Confidence              8999999999998654        221   222 27889999999997 889999999999999999876332 2233


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC--------CCEEEEEEcCCCcEEEEe--CCC----
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYITTA--DGS----  208 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~--~~~----  208 (264)
                      .|...+.+++|+|++. ++++++.|+.|++||.+ ++....+..+        ..+.++.|++++.++++.  .++    
T Consensus       190 ~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             CGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             CCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            4677899999998755 56667788999999999 5554444321        268899999999887542  222    


Q ss_pred             --cEEEEECCCc
Q 024676          209 --SVKFWDANHF  218 (264)
Q Consensus       209 --~i~iwd~~~~  218 (264)
                        .+++|++++.
T Consensus       268 ~~~v~i~~l~~~  279 (434)
T 2oit_A          268 SPDVVMALLPKK  279 (434)
T ss_dssp             CCEEEEEECCCT
T ss_pred             CCceEEEEeccC
Confidence              3899999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=7.7e-19  Score=147.12  Aligned_cols=242  Identities=13%  Similarity=0.108  Sum_probs=163.7

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCC----CCcEEEeCCC--Cce--EEeeeCCcCCEEEEEECCCCcEEEE-ecCCCeE
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKD----SSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDANALFSAS-GSADFTA   85 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d----~~v~i~~~~~--~~~--~~~~~~H~~~V~~v~~~~~~~~l~s-~s~D~~v   85 (264)
                      |......++|+|   ||++|++++.+    +.+.+|++..  +++  +..+..+......+++  ++.++++ ...++++
T Consensus        48 ~~~~p~~l~~sp---dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSA---DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI  122 (361)
T ss_dssp             ECSCCCSEEECT---TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred             cCCCCceEEECC---CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence            566677788985   99999999886    7899997654  543  3444545566677888  6666554 4578999


Q ss_pred             EEEeCCCCcEEE----Eeec-----------CCeEEEEEECCCCCEEEEee-CCCcEEEeeCCCCCC----C-C------
Q 024676           86 KLWDALTGDEKH----SFEH-----------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDA----P-P------  138 (264)
Q Consensus        86 ~iwd~~~~~~~~----~~~~-----------~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~----~-~------  138 (264)
                      .+|++.....+.    ...+           ...+..++|+|++++++++. .++.+++|+++....    . .      
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred             EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence            999987543221    1111           12357899999999776655 478999999875432    1 1      


Q ss_pred             -eEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--eEEecC----CCCEEEEEEcCCCcEEE-EeC--CC
Q 024676          139 -REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLET----KSPVTSAEVSRDGRYIT-TAD--GS  208 (264)
Q Consensus       139 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~----~~~v~~~~~s~~~~~l~-~~~--~~  208 (264)
                       ............++|+|++..+++++..++.|.+||+++++.  +..+..    ......++|+|||++|. +..  ++
T Consensus       203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence             112233445778999998877777766679999999997754  222221    23467999999999764 443  37


Q ss_pred             cEEEEECC--Cce--eeeEEecCCCCceeeEcCCCCCEEEEec-CCCeEEEEE--cCccee
Q 024676          209 SVKFWDAN--HFG--LVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFD--FHTGEQ  262 (264)
Q Consensus       209 ~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~v~vwd--~~~g~~  262 (264)
                      .|.+|++.  +++  .+..+.....+..++++|+ +++|++++ .++.|.+|+  ..+|+.
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPN-GKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCCEEEECTT-SCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEEEcCCCCcEEEeeEecCCCCCceEEECCC-CCEEEEEECCCCCEEEEEEECCCCcE
Confidence            89999985  333  4555544445667788885 66666555 789999964  446654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4.9e-21  Score=164.90  Aligned_cols=162  Identities=13%  Similarity=0.035  Sum_probs=127.2

Q ss_pred             eccCCCeeeeEeccCCCCCeEEE----EEeCCCCcEEEeCCCC--------c---eEEeeeCCcCCEEEEEECCC-CcEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLV----SASKDSSPMLRNGETG--------D---WIGTFEGHKGAVWSCCLDAN-ALFS   76 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~----t~s~d~~v~i~~~~~~--------~---~~~~~~~H~~~V~~v~~~~~-~~~l   76 (264)
                      ..|..+|.+|+|+|   +|++|+    +|+.|+.|++||+.++        +   .+..+.+|.+.|.+++|+|+ +.++
T Consensus        89 ~~~~~~v~~l~~sp---dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A           89 VPMKFPIHHLALSC---DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             ECCSSCEEEEEECT---TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             ccCCCcccEEEEcC---CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            45777899999996   899999    8999999999998654        1   24567789999999999998 7899


Q ss_pred             EEecCCCeEEEEeCCCCcEEE-EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec------cCCCCeE
Q 024676           77 ASGSADFTAKLWDALTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG------NSSGSIR  149 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~------~~~~~i~  149 (264)
                      ++++.|++|++||+.++.... ...|...|.+++|+|++++|++|+.|+.|++||++ ++.......      .+...+.
T Consensus       166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred             EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence            999999999999999885543 33477899999999999999999999999999987 322111111      1223788


Q ss_pred             EEEEecCCCeEEEEeeCCCe------EEEEECCCC
Q 024676          150 TVAWLHSDQTILSSCTDSGG------VRLWDARSG  178 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~------v~iwd~~~~  178 (264)
                      +++|.++...+++....+|.      +++||+++.
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99999866555555545433      999999865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=5.9e-20  Score=151.96  Aligned_cols=225  Identities=12%  Similarity=0.168  Sum_probs=154.6

Q ss_pred             EEEEEeCCCCcEEEeCC-CCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCC-CeEEEEeCC--CCc--EEEEeecCCe
Q 024676           33 FLVSASKDSSPMLRNGE-TGD--WIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLWDAL--TGD--EKHSFEHKHI  104 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~-~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-~~v~iwd~~--~~~--~~~~~~~~~~  104 (264)
                      .+++++.|+.|++|++. +++  .+..+ .|...+..++|+|++.++++++.+ +.|++|++.  ++.  .+..+.....
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence            44555889999999985 343  23333 467788899999999988777776 999999987  554  3334444457


Q ss_pred             EEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCC-CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC-Ccee
Q 024676          105 VRACAFSEDTHLLLTGGF-EKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-GKIV  181 (264)
Q Consensus       105 v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~  181 (264)
                      +..++|+|+++++++++. ++.+.+||++.+.. ...........+..++|+|++..+++++..++.|++||+++ ++..
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            888999999998877665 78899999842211 11111123345777889988887777765779999999987 6543


Q ss_pred             E------EecCCCCEEEEEEcCCCcEE-EEe-CCCcEEEEECCC--cee--eeEEe-cCC------CCceeeEcCCCCCE
Q 024676          182 Q------TLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANH--FGL--VKGYN-MPC------NTESASLEPKLGNI  242 (264)
Q Consensus       182 ~------~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~--~~~--~~~~~-~~~------~~~~~~~~~~~~~~  242 (264)
                      .      .......+..++++|+++++ +++ .++.|.+||+..  ++.  ...+. .+.      .+..+.+.++...+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l  245 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  245 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence            2      22234568889999999865 444 468999999953  322  23332 111      12246777753344


Q ss_pred             EEEecCCCeEEEEEcC
Q 024676          243 FIAGGEDMWVHVFDFH  258 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~  258 (264)
                      +++++.|+.|++||+.
T Consensus       246 ~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          246 YACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEecCCCEEEEEEEc
Confidence            5577789999999987

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.6e-20  Score=170.66  Aligned_cols=243  Identities=14%  Similarity=0.148  Sum_probs=169.9

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-----CceEEeeeCCcCC--------------EEEEEECCC
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKGA--------------VWSCCLDAN   72 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-----~~~~~~~~~H~~~--------------V~~v~~~~~   72 (264)
                      +..|...+..++|+|   ||++|+.+ .|+.|++|++.+     ++..+....+...              +.+++|+||
T Consensus       116 l~~~~~~~~~~~~Sp---dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD  191 (706)
T 2z3z_A          116 LFDTNEETASLDFSP---VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK  191 (706)
T ss_dssp             EECCTTCCTTCEECT---TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT
T ss_pred             ccCCcccccCCcCCC---CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC
Confidence            345777888999996   99999884 789999999998     8766544444333              478999999


Q ss_pred             CcEEEEec---------------------------------CCCeEEEEeCCCCcEEEEe---ecCCeEEEEEECCCCCE
Q 024676           73 ALFSASGS---------------------------------ADFTAKLWDALTGDEKHSF---EHKHIVRACAFSEDTHL  116 (264)
Q Consensus        73 ~~~l~s~s---------------------------------~D~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~  116 (264)
                      +++|++++                                 .+..|++||+.+++.....   .+...+..+.|+|+++.
T Consensus       192 g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  271 (706)
T 2z3z_A          192 GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI  271 (706)
T ss_dssp             SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE
T ss_pred             CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE
Confidence            99999887                                 4578999999988755443   35567999999999999


Q ss_pred             EEEeeCCC-----cEEEeeCCCCCCCCeEe-ccCCC---CeEEEEEec--CCCeEEEEeeCCCeEEEEECC-CCceeEEe
Q 024676          117 LLTGGFEK-----ILRIFDLNRPDAPPREV-GNSSG---SIRTVAWLH--SDQTILSSCTDSGGVRLWDAR-SGKIVQTL  184 (264)
Q Consensus       117 l~s~~~d~-----~i~~~d~~~~~~~~~~~-~~~~~---~i~~~~~~~--~~~~~~~~~~~d~~v~iwd~~-~~~~~~~~  184 (264)
                      |++++.++     .+++||+.+++...... .....   .+..++|+|  ++. +++++..++.++||+++ +++.+..+
T Consensus       272 l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l  350 (706)
T 2z3z_A          272 LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQV  350 (706)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEEC
T ss_pred             EEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEec
Confidence            99887776     89999998763221211 11111   124568887  655 66677778899999876 56666656


Q ss_pred             cC-CCCEEE-EEEcCCCcEEE-EeC-CC----cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCC----CeE
Q 024676          185 ET-KSPVTS-AEVSRDGRYIT-TAD-GS----SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED----MWV  252 (264)
Q Consensus       185 ~~-~~~v~~-~~~s~~~~~l~-~~~-~~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d----~~v  252 (264)
                      .. ...+.. +.|+|+++.|+ ++. ++    .|..||+.+++ .+.+..........++|+ +++++..+.+    ..+
T Consensus       351 ~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spd-g~~l~~~~~~~~~p~~i  428 (706)
T 2z3z_A          351 TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPD-GSAIIDIFQSPTVPRKV  428 (706)
T ss_dssp             CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTT-SSEEEEEEECSSCSCEE
T ss_pred             CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCC-CCEEEEEecCCCCCcEE
Confidence            43 345666 79999997654 333 33    56667776654 333333334456677775 6666654333    569


Q ss_pred             EEEEcCcce
Q 024676          253 HVFDFHTGE  261 (264)
Q Consensus       253 ~vwd~~~g~  261 (264)
                      ++||+++++
T Consensus       429 ~l~d~~~~~  437 (706)
T 2z3z_A          429 TVTNIGKGS  437 (706)
T ss_dssp             EEEESSSCE
T ss_pred             EEEECCCCe
Confidence            999998775

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=5.9e-21  Score=170.05  Aligned_cols=235  Identities=14%  Similarity=0.073  Sum_probs=161.2

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeC-CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC---CCeEEEEeC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDA   90 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~-d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~---D~~v~iwd~   90 (264)
                      +..+|+.+.|+|   ||++||.++. |+++++|++.+++..+....|...|..++|+|| +++++++.   +...+||.+
T Consensus        20 ~~~~~~~~~~~~---DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           20 IAVEKYSLQGVV---DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HHSCEEEEEEEE---TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             hccchheeecCC---CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            456899999996   9999999887 999999998766654433334468999999999 77777665   566677654


Q ss_pred             CC---CcEEEEeecCCeEEEEEECCCCCE-EEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           91 LT---GDEKHSFEHKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        91 ~~---~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      ..   +... .+.....+...+|+|+++. +++.+.++.+.+||+.+++..  .+..+..  ..++|+|++..++.++ .
T Consensus        96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~--~l~~~~~--~~~~~spDG~~la~~~-~  169 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR--ELARLPG--FGFVSDIRGDLIAGLG-F  169 (582)
T ss_dssp             ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE--EEEEESS--CEEEEEEETTEEEEEE-E
T ss_pred             eccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE--EeecCCC--ceEEECCCCCEEEEEE-E
Confidence            33   2222 3332333445677887743 334444444559999776432  2222222  6788898877655443 3


Q ss_pred             C----CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC-CC--cEEEEECCCceeeeEEecCC-CCceee----
Q 024676          167 S----GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GS--SVKFWDANHFGLVKGYNMPC-NTESAS----  234 (264)
Q Consensus       167 d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~--~i~iwd~~~~~~~~~~~~~~-~~~~~~----  234 (264)
                      +    +.|++||+.+++......+...+..++|||||++|++++ ++  .|++||+.+++.. .+.... ......    
T Consensus       170 ~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence            3    679999999988764444556689999999999887543 56  7999999887765 333221 122344    


Q ss_pred             ----EcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          235 ----LEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       235 ----~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                          ++|+ |.++++++.|+.+++|++  |+.+
T Consensus       249 ~~~~~spd-g~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          249 TWLGYLPD-GRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             EEEEECTT-SCEEEEEEETTEEEEEET--TEEE
T ss_pred             cceeEcCC-CcEEEEEEcCCcEEEEEE--CCee
Confidence                7775 599999999999999998  6543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=2.2e-19  Score=151.09  Aligned_cols=241  Identities=9%  Similarity=0.073  Sum_probs=164.7

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCC-CCceEEeee--CCcCCEEEEEECCCCcE--EEEec---------
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TGDWIGTFE--GHKGAVWSCCLDANALF--SASGS---------   80 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~-~~~~~~~~~--~H~~~V~~v~~~~~~~~--l~s~s---------   80 (264)
                      +...+..++|+|   +|++|++++.+ .+.+|++. ++++.....  .+ +....++|+|++++  +++++         
T Consensus        38 ~~~~~~~~a~sp---dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~  112 (365)
T 1jof_A           38 QDEPISWMTFDH---ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             TTCCCSEEEECT---TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CCCCCcEEEECC---CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence            344677888885   99999999988 89999987 777654332  12 23445889999984  55664         


Q ss_pred             ----CCCeEEEEeCC-CCcEEEEee-----cCCeEEEEEECCCCCEEEEeeC-CCcEEEeeCC-CCCCCC-eEec--cCC
Q 024676           81 ----ADFTAKLWDAL-TGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGF-EKILRIFDLN-RPDAPP-REVG--NSS  145 (264)
Q Consensus        81 ----~D~~v~iwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~-~~~~~~-~~~~--~~~  145 (264)
                          .++++++|++. .++......     +...+..++|+|++++++++.. ++.|++|+++ +++... ....  .+.
T Consensus       113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence                69999999997 455433332     3457899999999998887664 6899999997 554321 1121  124


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCeEEEEECC--CCcee---EEec---CC----C-------CEEEEE-EcCCCcEEEEe
Q 024676          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGKIV---QTLE---TK----S-------PVTSAE-VSRDGRYITTA  205 (264)
Q Consensus       146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~~---~~~~---~~----~-------~v~~~~-~s~~~~~l~~~  205 (264)
                      .....++|+|++..++++...++.|.+|++.  +++..   ..+.   ..    .       .+..++ ++|||++|..+
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~  272 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence            5678899999887776666667899999765  56542   1221   11    2       478899 99999876543


Q ss_pred             C--CC-----cEEEEECC-Cceeee---EEe-cCCCCceeeEcCC--CCCEEEEecC-CCeEEEEEcCcc
Q 024676          206 D--GS-----SVKFWDAN-HFGLVK---GYN-MPCNTESASLEPK--LGNIFIAGGE-DMWVHVFDFHTG  260 (264)
Q Consensus       206 ~--~~-----~i~iwd~~-~~~~~~---~~~-~~~~~~~~~~~~~--~~~~~~~gs~-d~~v~vwd~~~g  260 (264)
                      +  +.     .|.+|++. +++...   ... ....+..++++|+  +++++++++. ++.|.+|+++..
T Consensus       273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            2  23     89999996 454332   122 2334556677774  4788887776 489999988654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=1.9e-20  Score=170.15  Aligned_cols=237  Identities=11%  Similarity=0.086  Sum_probs=162.7

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC----
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT----   92 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~----   92 (264)
                      ..|.+++|+|   |+.++++  .|+.+++||..+++.. .+..|.+.+..++|+||+++++++ .|+.|++||+.+    
T Consensus        82 ~~v~~~~~sp---d~~~~~~--~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAG---RGLVVLF--TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETT---TTEEEEE--ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECC---CCeEEEE--ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence            5689999996   6444444  4599999999988754 344566778889999999999884 689999999988    


Q ss_pred             -CcEEEEeec-CCe--------------EEEEEECCCCCEEEEee---------------------------------CC
Q 024676           93 -GDEKHSFEH-KHI--------------VRACAFSEDTHLLLTGG---------------------------------FE  123 (264)
Q Consensus        93 -~~~~~~~~~-~~~--------------v~~~~~~~~~~~l~s~~---------------------------------~d  123 (264)
                       ++....... ...              +..+.|+|+++.|++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             765543322 222              47899999999999987                                 34


Q ss_pred             CcEEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeCC----CeEEEEECCCCceeEEe-c--CC---CCEEE
Q 024676          124 KILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDS----GGVRLWDARSGKIVQTL-E--TK---SPVTS  192 (264)
Q Consensus       124 ~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~-~--~~---~~v~~  192 (264)
                      ..+++||+.+++...... ..+...+..++|+|++..++++..+.    ..|.+||+++++....+ .  ..   ..+..
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            679999998764321111 13445688999999887666654432    28999999998433222 1  11   12456


Q ss_pred             EEEcC--CCcEEEEe-CCCcEEEEECC-CceeeeEEecCCCCc-e-eeEcCCCCCEE-EEecCCC----eEEEEEcCcce
Q 024676          193 AEVSR--DGRYITTA-DGSSVKFWDAN-HFGLVKGYNMPCNTE-S-ASLEPKLGNIF-IAGGEDM----WVHVFDFHTGE  261 (264)
Q Consensus       193 ~~~s~--~~~~l~~~-~~~~i~iwd~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~~gs~d~----~v~vwd~~~g~  261 (264)
                      +.|+|  ||++++++ .++.+++|++. .++.++.+..+.... . ..++++ ++.| ++++.++    .|+.||+.+++
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPK-GTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTT-SSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCC-CCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            89999  99987765 46788888875 455555554433222 3 567775 5544 5555554    77777877664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=5.8e-20  Score=167.32  Aligned_cols=243  Identities=15%  Similarity=0.093  Sum_probs=163.2

Q ss_pred             EeeccCC---CeeeeEeccCCCCCeEEEEEeCC---------CCcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEE
Q 024676           11 VCHGHSR---PVVDLFYSPITPDGFFLVSASKD---------SSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFS   76 (264)
Q Consensus        11 ~~~~h~~---~v~~~~~~~~~~~g~~l~t~s~d---------~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l   76 (264)
                      ++.+|..   .|..++|+|   ||++|++++.+         +.+.+||+.+++..  ....+|...+..++|+||++++
T Consensus        52 ~~~~~~~~~~~v~~~~~Sp---Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~l  128 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISP---DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQL  128 (723)
T ss_dssp             EECTTTTTTTTCSEEEECT---TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCE
T ss_pred             EeccccccccccceEEECC---CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEE
Confidence            3345554   388999996   99999999876         56679999988752  2233566668899999999999


Q ss_pred             EEecCCCeEEEEeCCCCcEEEEeec-CCe------------------EEEEEECCCCCEEEEeeCCC-------------
Q 024676           77 ASGSADFTAKLWDALTGDEKHSFEH-KHI------------------VRACAFSEDTHLLLTGGFEK-------------  124 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~~~~~~~~-~~~------------------v~~~~~~~~~~~l~s~~~d~-------------  124 (264)
                      +.++. +.|++||+.+++....... ...                  +..++|+|+++.|++++.|+             
T Consensus       129 a~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          129 IFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             EEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence            98875 7999999998876554432 222                  26899999999999887553             


Q ss_pred             ---------------------cEEEeeCCCCCCCCeEecc------CCCCeEEEEEecCCCeEEEEee---CCCeEEEEE
Q 024676          125 ---------------------ILRIFDLNRPDAPPREVGN------SSGSIRTVAWLHSDQTILSSCT---DSGGVRLWD  174 (264)
Q Consensus       125 ---------------------~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~---~d~~v~iwd  174 (264)
                                           .+++||+.+++.. ..+..      +...+..++|+|++..+++...   .+..|.+||
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCcee-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence                                 7899999876532 22222      2456788999997765444433   235799999


Q ss_pred             CCCCceeEEecC--CCCE----EEEEEcCCCcEEE---EeCCC------cEEEEE-CCCce--eeeEEec-CCCCce-ee
Q 024676          175 ARSGKIVQTLET--KSPV----TSAEVSRDGRYIT---TADGS------SVKFWD-ANHFG--LVKGYNM-PCNTES-AS  234 (264)
Q Consensus       175 ~~~~~~~~~~~~--~~~v----~~~~~s~~~~~l~---~~~~~------~i~iwd-~~~~~--~~~~~~~-~~~~~~-~~  234 (264)
                      +.++++...+..  ...+    ..+.|+|||+.|+   +..++      .|.+|| ...+.  +.+.+.. ...... ..
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~  366 (723)
T 1xfd_A          287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA  366 (723)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred             CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence            999987654432  2222    3789999998544   23455      466777 33333  1333322 122222 46


Q ss_pred             EcCCCCCEEEEe-cCC--CeEEEEEcCc
Q 024676          235 LEPKLGNIFIAG-GED--MWVHVFDFHT  259 (264)
Q Consensus       235 ~~~~~~~~~~~g-s~d--~~v~vwd~~~  259 (264)
                      ++++ ++.|+.. ..+  +.+++|+++.
T Consensus       367 ~spd-g~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          367 YDEK-GNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             EETT-TTEEEEEESSSCTTCCEEEEECS
T ss_pred             EcCC-CCEEEEEEcCCCCcceEEEEEeC
Confidence            7775 6666554 444  7899998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=2.9e-20  Score=169.41  Aligned_cols=235  Identities=12%  Similarity=0.019  Sum_probs=159.4

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcC---CEEEEEECCCCcEEEEecC---------CCeEEEE
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSA---------DFTAKLW   88 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~---~V~~v~~~~~~~~l~s~s~---------D~~v~iw   88 (264)
                      .+.|+|   ||+++++ +.|+.+++|+..+++....+.+|..   .|.+++|+||++++++++.         |+.+++|
T Consensus        20 ~~~~s~---dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWIS---GQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESS---SSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECC---CCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            678885   8876655 4699999999999988777776654   4889999999999988876         7899999


Q ss_pred             eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCe-----------------EEE
Q 024676           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI-----------------RTV  151 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i-----------------~~~  151 (264)
                      |+.+++.+........+..++|+|+++.|+.+. ++.|++|++.+++........+...+                 ..+
T Consensus        96 d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           96 DLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             ETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             ECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            999887521122235678899999999998875 78999999977653211111111111                 478


Q ss_pred             EEecCCCeEEEEeeCCC---------------------------------eEEEEECCCCcee--EEe-------cCCCC
Q 024676          152 AWLHSDQTILSSCTDSG---------------------------------GVRLWDARSGKIV--QTL-------ETKSP  189 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~---------------------------------~v~iwd~~~~~~~--~~~-------~~~~~  189 (264)
                      +|+|++..++.+..+++                                 .|++||+.+++..  ..+       .+...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            99998887666554422                                 7889999988753  122       13345


Q ss_pred             EEEEEEcCCCcEEEEeC--C---CcEEEEE----CCCceeeeEEe----cCC-CCc-----eeeEcCCCCC-EEE-EecC
Q 024676          190 VTSAEVSRDGRYITTAD--G---SSVKFWD----ANHFGLVKGYN----MPC-NTE-----SASLEPKLGN-IFI-AGGE  248 (264)
Q Consensus       190 v~~~~~s~~~~~l~~~~--~---~~i~iwd----~~~~~~~~~~~----~~~-~~~-----~~~~~~~~~~-~~~-~gs~  248 (264)
                      +.+++||||++++++..  +   ..|.+||    +.+++....+.    .+. ...     ...++|+ |+ +++ +...
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~  333 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD-AISYYKIFSDK  333 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT-SSCEEEEEECT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC-CCeEEEEEEcc
Confidence            88999999988766532  1   2488899    77776544331    221 122     4567775 55 333 4445


Q ss_pred             CC--eEEEEEcCcce
Q 024676          249 DM--WVHVFDFHTGE  261 (264)
Q Consensus       249 d~--~v~vwd~~~g~  261 (264)
                      ++  .|++||+.+++
T Consensus       334 ~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          334 DGYKHIHYIKDTVEN  348 (719)
T ss_dssp             TSCEEEEEESSCSTT
T ss_pred             CCceEEEEEECCCCc
Confidence            55  56666766554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=1.1e-17  Score=135.73  Aligned_cols=239  Identities=10%  Similarity=0.159  Sum_probs=173.1

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee------CCcCCEEEEEE-CCCCcEEEEecC-CCeE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------GHKGAVWSCCL-DANALFSASGSA-DFTA   85 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~------~H~~~V~~v~~-~~~~~~l~s~s~-D~~v   85 (264)
                      +|...+.+|+++|   +|+++++.+.++.|.+|+.. ++.+..+.      +|...+..+++ .+++.++++... ++.|
T Consensus        27 g~~~~p~~v~~~~---~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECC---CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence            5667788999985   78888888899999999987 66655553      35567899999 578877777643 8899


Q ss_pred             EEEeCCCCcEEEEeec--CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec--cCCCCeEEEEEecCCCeEE
Q 024676           86 KLWDALTGDEKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~  161 (264)
                      ++|| .++..+..+..  ...+..++++|+++++++...++.|.+||.. ++. .....  ........+++.+++ .++
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~p~~i~~~~~g-~l~  178 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNV-LHKFGCSKHLEFPNGVVVNDKQ-EIF  178 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEEECTTTCSSEEEEEECSSS-EEE
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCE-EEEeCCCCccCCcEEEEECCCC-CEE
Confidence            9999 56666666542  3468899999999988887778999999964 222 12222  223457788887754 466


Q ss_pred             EEeeCCCeEEEEECCCCceeEEecCC---CCEEEEEEcCCCcEEEEeC-CC-cEEEEECCCceeeeEEecCCC---Ccee
Q 024676          162 SSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTAD-GS-SVKFWDANHFGLVKGYNMPCN---TESA  233 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~-~~-~i~iwd~~~~~~~~~~~~~~~---~~~~  233 (264)
                      ++...++.|++||.. ++.+..+...   ..+..++++|+|+++++.. ++ .|.+||. +++.+..+.....   +..+
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence            666667899999975 5555556432   4688999999998877764 44 8999995 4555666654322   3456


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEcCcceeeC
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG  264 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i~  264 (264)
                      ++.+ +++++++ +.|+.|++|++....+++
T Consensus       257 ~~~~-~g~l~vs-~~~~~v~v~~~~~~~pvg  285 (286)
T 1q7f_A          257 ALMD-DGSVVLA-SKDYRLYIYRYVQLAPVG  285 (286)
T ss_dssp             EEET-TTEEEEE-ETTTEEEEEECSCCCCTT
T ss_pred             EECC-CCcEEEE-CCCCeEEEEEcccccccC
Confidence            6777 4777777 569999999988766553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=8.7e-19  Score=144.56  Aligned_cols=203  Identities=15%  Similarity=0.120  Sum_probs=153.8

Q ss_pred             CeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeC-C----cCCEEEEEECCCCcEEEEec-----------
Q 024676           18 PVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEG-H----KGAVWSCCLDANALFSASGS-----------   80 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~-H----~~~V~~v~~~~~~~~l~s~s-----------   80 (264)
                      .+..++|+|   +|++| ++++.++.+.+||..+++.+..+.. +    ...+..++|+|+++++++++           
T Consensus        35 ~~~~~~~s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           35 TPMVPMVAP---GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCCEEECT---TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CccceEEcC---CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence            467889986   88654 6667788999999999988776653 2    22567899999998887775           


Q ss_pred             -CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-----------------
Q 024676           81 -ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-----------------  142 (264)
Q Consensus        81 -~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-----------------  142 (264)
                       .++.|.+||+.+++....+.....+..++|+|++++++++  ++.+.+||+.+++.......                 
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  189 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence             5799999999998887777766677888999999988877  68899999875432110000                 


Q ss_pred             ------------------------------------------------cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676          143 ------------------------------------------------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (264)
Q Consensus       143 ------------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd  174 (264)
                                                                      .+...+..++|+|++..++++   ++.|.+||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d  266 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFD  266 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEE
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEE
Confidence                                                            001123457888877665554   48999999


Q ss_pred             CCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC
Q 024676          175 ARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC  228 (264)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~  228 (264)
                      +++++.+..+.....+.+++++|+|+++.. +.++.|++||+.+++.+..+..+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             TTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            999998877776667889999999986554 457899999999999888887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=2.1e-18  Score=163.38  Aligned_cols=237  Identities=11%  Similarity=0.042  Sum_probs=175.5

Q ss_pred             eeccCC-CeeeeEeccCCCCCeEEEEEeCCCCcE-EEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           12 CHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPM-LRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        12 ~~~h~~-~v~~~~~~~~~~~g~~l~t~s~d~~v~-i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      +.+|.. .+..+.|+    ||+.|+.++.+..+. +|+..+++.. .+.+|...+..++|+||++++++++.|+.+++||
T Consensus       332 ~~~~~~~~~~~~~~s----dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d  406 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD----TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD  406 (1045)
T ss_dssp             CSCCSCEEEEEECSS----SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCCcceEEeeeEc----CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence            345666 77777776    788999999888888 8898877654 3448889999999999999999999999999999


Q ss_pred             CCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCC----------cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEK----------ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        90 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~----------~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      +.+++..... .|...+..++|+|++++|++++.++          .+++||+.+++  ...+..+...+..++|+|++.
T Consensus       407 ~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          407 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSC
T ss_pred             CCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCC
Confidence            9999877766 5777889999999999998887654          89999998654  344445566778889998877


Q ss_pred             eEEEEeeCCCeEEEEECCCCce-------------------------------------------eEEec-CCCCEEEEE
Q 024676          159 TILSSCTDSGGVRLWDARSGKI-------------------------------------------VQTLE-TKSPVTSAE  194 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~-------------------------------------------~~~~~-~~~~v~~~~  194 (264)
                      .++.. +.++..++|+......                                           +..+. +...+..+.
T Consensus       485 ~l~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~  563 (1045)
T 1k32_A          485 NLYYL-SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII  563 (1045)
T ss_dssp             EEEEE-ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEE
T ss_pred             EEEEE-ecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheE
Confidence            65544 5556666676432211                                           11221 224578899


Q ss_pred             EcCCCcEEEE------------eC--CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          195 VSRDGRYITT------------AD--GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       195 ~s~~~~~l~~------------~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      ++||+++++.            +.  ...+.+||+.+++.. .+.  .......+++ +|+.|++++.| .+++||+.++
T Consensus       564 ~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~--~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~  638 (1045)
T 1k32_A          564 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK--NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEK  638 (1045)
T ss_dssp             ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE--EEEEEEEECT-TSCEEEEEETT-SCEEEEESSC
T ss_pred             EcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee--cCcceEEECC-CCCEEEEEcCC-cEEEEeCccC
Confidence            9999986663            11  346888999887643 232  2234556776 58888888877 7999999887


Q ss_pred             e
Q 024676          261 E  261 (264)
Q Consensus       261 ~  261 (264)
                      +
T Consensus       639 ~  639 (1045)
T 1k32_A          639 P  639 (1045)
T ss_dssp             T
T ss_pred             c
Confidence            6

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=4.4e-19  Score=167.99  Aligned_cols=230  Identities=12%  Similarity=0.007  Sum_probs=173.6

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-----------CcCCEEEEEEC-CCCcEEEEecCCCeE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-----------HKGAVWSCCLD-ANALFSASGSADFTA   85 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-----------H~~~V~~v~~~-~~~~~l~s~s~D~~v   85 (264)
                      .+..+.|+|   ||++|+.+ .++.+.+|+....+.. .+.+           |...+.+++|+ ||++++++++ ++.+
T Consensus       246 ~~~~~~~Sp---DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i  319 (1045)
T 1k32_A          246 DYYPRHLNT---DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQA  319 (1045)
T ss_dssp             SSCEEEEEE---SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEE
T ss_pred             CcceeeEcC---CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEE
Confidence            355678885   89988887 4889999998544433 5554           44578999999 9999988887 7899


Q ss_pred             EEEeCCCCcEEEEeecCC-eEEEEEECCCCCEEEEeeCCCcEE-EeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           86 KLWDALTGDEKHSFEHKH-IVRACAFSEDTHLLLTGGFEKILR-IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~-~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      .+|+..++.......+.. .+..+.|+ +++.+++++.+..+. +|++.+++.  ..+..+...+..++|+|++..+ +.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~l~~~~~~~~~~~~SpDG~~l-a~  395 (1045)
T 1k32_A          320 FIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFA-VV  395 (1045)
T ss_dssp             EEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EECCCCCCSEEEEEECTTSSEE-EE
T ss_pred             EEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eEecCCccceeeeEECCCCCEE-EE
Confidence            999998887655545666 78999999 999999988888888 889876542  2333556788999999877654 45


Q ss_pred             eeCCCeEEEEECCCCceeEEe-cCCCCEEEEEEcCCCcEEEEe-CC----------CcEEEEECCCceeeeEEecC-CCC
Q 024676          164 CTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTA-DG----------SSVKFWDANHFGLVKGYNMP-CNT  230 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~----------~~i~iwd~~~~~~~~~~~~~-~~~  230 (264)
                      ++.++.|++||+++++..... .+...+..++|||||++|+.+ .+          +.|++||+.+++ +..+..+ ...
T Consensus       396 ~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~  474 (1045)
T 1k32_A          396 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD  474 (1045)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred             ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence            567799999999999877666 445567899999999987653 22          389999999876 3333322 223


Q ss_pred             ceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      ....|.+ +|++|+.++.++..++|+...
T Consensus       475 ~~~~~sp-dG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          475 YAPAFDA-DSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             EEEEECT-TSCEEEEEESCCCCCEECSSS
T ss_pred             CCceEcC-CCCEEEEEecccCCcCcchhc
Confidence            4456777 588899999888888887543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=8.4e-19  Score=160.48  Aligned_cols=239  Identities=9%  Similarity=0.006  Sum_probs=162.1

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCE-----EEEEECCCCcEEEEecCC---------
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV-----WSCCLDANALFSASGSAD---------   82 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V-----~~v~~~~~~~~l~s~s~D---------   82 (264)
                      .....+.|+|   ||++|+++  |++|++|++.+++....+.+|....     ..++|+||+++++.++.+         
T Consensus        17 ~~~~~~~w~~---dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           17 LKLYSLRWIS---DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCEEECS---SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccccccEECC---CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            3456789996   89998886  9999999999999877788876432     347889999999988876         


Q ss_pred             CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCe--------------
Q 024676           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI--------------  148 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i--------------  148 (264)
                      +.+.+||+.+++......+...+....|+|+++.|+.+ .|+.|++|++.+++............+              
T Consensus        92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            45569999998765544566779999999999999887 568999999876653211111111111              


Q ss_pred             ---EEEEEecCCCeEEEEeeCCC-----------------------------------eEEEEECCC---Cc--eeEEec
Q 024676          149 ---RTVAWLHSDQTILSSCTDSG-----------------------------------GVRLWDARS---GK--IVQTLE  185 (264)
Q Consensus       149 ---~~~~~~~~~~~~~~~~~~d~-----------------------------------~v~iwd~~~---~~--~~~~~~  185 (264)
                         ..+.|+|++..++....+++                                   +|++||+.+   ++  ....+.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence               34789998887666543332                                   588899988   73  122232


Q ss_pred             -------CCCCEEEEEEcCCCcEEEEe--C---CCcEEEEECCCce----ee--eEE--ecCC-C-----CceeeEcCCC
Q 024676          186 -------TKSPVTSAEVSRDGRYITTA--D---GSSVKFWDANHFG----LV--KGY--NMPC-N-----TESASLEPKL  239 (264)
Q Consensus       186 -------~~~~v~~~~~s~~~~~l~~~--~---~~~i~iwd~~~~~----~~--~~~--~~~~-~-----~~~~~~~~~~  239 (264)
                             +...+..++|+|||++++..  .   +..|.+||+.+++    +.  ..+  ..+. .     .....|+|+ 
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD-  329 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD-  329 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT-
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC-
Confidence                   33458899999999865432  1   2369999998776    22  111  1111 1     224567775 


Q ss_pred             CCEEE-EecC-C--CeEEEEEcCccee
Q 024676          240 GNIFI-AGGE-D--MWVHVFDFHTGEQ  262 (264)
Q Consensus       240 ~~~~~-~gs~-d--~~v~vwd~~~g~~  262 (264)
                      |+.++ ..++ +  ..|++||+++++.
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCCce
Confidence            66555 5543 3  5678888876653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=2.7e-18  Score=142.41  Aligned_cols=201  Identities=10%  Similarity=0.041  Sum_probs=146.1

Q ss_pred             CeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCC------cCCEEEEEECCCCcEEEEecCC--------
Q 024676           18 PVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGH------KGAVWSCCLDANALFSASGSAD--------   82 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H------~~~V~~v~~~~~~~~l~s~s~D--------   82 (264)
                      .+..++|+|   +|+++ +++..++.+.+||..+++.+..+..+      ...+..++|+|+++++++++.+        
T Consensus        44 ~~~~~~~s~---dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           44 GPGTAMMAP---DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SSCEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCceeEECC---CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence            467888885   88755 56667899999999999887776632      2236789999999998888765        


Q ss_pred             ----CeEEEEeCCCCc---EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC-----------
Q 024676           83 ----FTAKLWDALTGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-----------  144 (264)
Q Consensus        83 ----~~v~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-----------  144 (264)
                          +.|.+||+.+++   .+..+.+...+..++|+|+++ +++++.  .+.+||+.+++.........           
T Consensus       121 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDV  197 (349)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred             ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccc
Confidence                899999998743   334455555688889999999 555543  49999987665321111110           


Q ss_pred             --------------------------------------------------------CCCeEEEEEec-CCCeEEEEeeCC
Q 024676          145 --------------------------------------------------------SGSIRTVAWLH-SDQTILSSCTDS  167 (264)
Q Consensus       145 --------------------------------------------------------~~~i~~~~~~~-~~~~~~~~~~~d  167 (264)
                                                                              ......++++| ++..++++   +
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~  274 (349)
T 1jmx_B          198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---L  274 (349)
T ss_dssp             CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---E
T ss_pred             eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---c
Confidence                                                                    01233455567 66655544   5


Q ss_pred             CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEE-EeCCCcEEEEECCCceeeeEEecC
Q 024676          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      +.|.+||+++++.+..+.....+..++++|++++|. ++.++.|++||.++++.+..+..+
T Consensus       275 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          275 NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            899999999999887776655677899999987554 445789999999999988888765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=7e-18  Score=142.31  Aligned_cols=246  Identities=15%  Similarity=0.056  Sum_probs=163.0

Q ss_pred             EeeccCCCeee-----eEeccCCCCCeEEEEEeC-CCC--cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC
Q 024676           11 VCHGHSRPVVD-----LFYSPITPDGFFLVSASK-DSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (264)
Q Consensus        11 ~~~~h~~~v~~-----~~~~~~~~~g~~l~t~s~-d~~--v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D   82 (264)
                      .+..|......     .+|+   |||++|+.++. ++.  +.+|+..+++..+...+|...+..++|+||++.|+.++.+
T Consensus        25 ~lt~~~~~~~~~~~~~~~~S---pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFT---RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBC---TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             EecCCcccccchhhcCccCC---CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            33455555544     5566   59999998887 674  6677998888777777777776677899999999999999


Q ss_pred             CeEEEEeCCCCcEEEEeec-CCeEEEE--EECCCCCEEEEe----------------------eCCCcEEEeeCCCCCCC
Q 024676           83 FTAKLWDALTGDEKHSFEH-KHIVRAC--AFSEDTHLLLTG----------------------GFEKILRIFDLNRPDAP  137 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~-~~~v~~~--~~~~~~~~l~s~----------------------~~d~~i~~~d~~~~~~~  137 (264)
                      +.+++||+.+++....+.. ...+...  .++|++++++..                      ..+..|.+||+.+++. 
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-  180 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-  180 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-
T ss_pred             CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-
Confidence            9999999999887665543 3334333  348999888742                      2446799999987653 


Q ss_pred             CeEeccCCCCeEEEEEec-CCCeEEEEeeC-----CCeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcEEEE-eC--
Q 024676          138 PREVGNSSGSIRTVAWLH-SDQTILSSCTD-----SGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITT-AD--  206 (264)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-----d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~-~~--  206 (264)
                       ..+..+...+..++|+| ++..++.+...     ...|.++|+.+++........  ..+....|+|||+.|+. +.  
T Consensus       181 -~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (388)
T 3pe7_A          181 -TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK  259 (388)
T ss_dssp             -EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             -EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence             33334456688899998 66655444332     237888888766543322332  24778899999985533 22  


Q ss_pred             CC---cEEEEECCCceeeeEEecCC------CCceeeEcCCCCCEEEEe---------cCCCeEEEEEcCccee
Q 024676          207 GS---SVKFWDANHFGLVKGYNMPC------NTESASLEPKLGNIFIAG---------GEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       207 ~~---~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g---------s~d~~v~vwd~~~g~~  262 (264)
                      +.   .|.+||+.+++.......+.      ......+.|+ |+.++..         +.+..|++||+.+++.
T Consensus       260 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          260 GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD-GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE-ECCC------------CCCCEEEEEETTTTEE
T ss_pred             CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC-CCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            22   39999998876432222221      1122346664 5545432         5677999999988764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=1.7e-17  Score=138.08  Aligned_cols=206  Identities=10%  Similarity=0.124  Sum_probs=142.9

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEe-CCCCcEEEeCC-CCc--eEEeeeC---------CcCCEEEEEECCCCcEEEEe
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGE-TGD--WIGTFEG---------HKGAVWSCCLDANALFSASG   79 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s-~d~~v~i~~~~-~~~--~~~~~~~---------H~~~V~~v~~~~~~~~l~s~   79 (264)
                      .+|...+..|+|+|   ||++|++++ .++.+.+|++. +++  .+..+..         +...+.+++|+|+++++++.
T Consensus        82 ~~~~~~p~~~a~sp---dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~  158 (347)
T 3hfq_A           82 VAPGTPPAYVAVDE---ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID  158 (347)
T ss_dssp             EEESCCCSEEEEET---TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE
T ss_pred             ecCCCCCEEEEECC---CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe
Confidence            45677788899996   899888887 67899999985 333  2333321         12348899999999977888


Q ss_pred             cCCCeEEEEeCC-CCcEEEE--e--ecCCeEEEEEECCCCCEEEE-eeCCCcEEEeeCCC--CCCCC-eEeccCC-----
Q 024676           80 SADFTAKLWDAL-TGDEKHS--F--EHKHIVRACAFSEDTHLLLT-GGFEKILRIFDLNR--PDAPP-REVGNSS-----  145 (264)
Q Consensus        80 s~D~~v~iwd~~-~~~~~~~--~--~~~~~v~~~~~~~~~~~l~s-~~~d~~i~~~d~~~--~~~~~-~~~~~~~-----  145 (264)
                      ..++.|++|++. ++.....  +  .....+..++|+|+++++++ ...++.+.+|+++.  ++... .......     
T Consensus       159 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          159 LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            889999999998 4543221  1  22335778999999996666 45678999999864  22111 1111111     


Q ss_pred             -CCeEEEEEecCCCeEEEEeeCCCeEEEEECCC-C--ceeEEecC-CCCEEEEEEcCCCcEEEE-eC-CCcEEEE--ECC
Q 024676          146 -GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-G--KIVQTLET-KSPVTSAEVSRDGRYITT-AD-GSSVKFW--DAN  216 (264)
Q Consensus       146 -~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~-~--~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~-~~~i~iw--d~~  216 (264)
                       .....++|+|++..++++...++.|.+||+.. +  +.+..+.. ...+..++|+|+|++|+. .. ++.|.+|  |..
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence             34777899998887877877789999999973 2  34444443 345788999999987654 43 4789999  555


Q ss_pred             Cceee
Q 024676          217 HFGLV  221 (264)
Q Consensus       217 ~~~~~  221 (264)
                      +++..
T Consensus       319 tg~l~  323 (347)
T 3hfq_A          319 SGKLS  323 (347)
T ss_dssp             TCCEE
T ss_pred             CCeEE
Confidence            55543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=9e-17  Score=133.21  Aligned_cols=237  Identities=8%  Similarity=0.067  Sum_probs=177.1

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCC------------------------CCcEEEeCCCCceEEeee-CCcCCEEEEEE
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKD------------------------SSPMLRNGETGDWIGTFE-GHKGAVWSCCL   69 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d------------------------~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~   69 (264)
                      -...+.+|+++|   +|+++++.+.+                        +.+.+||..+++.+..+. ++-.....+++
T Consensus        22 ~l~~v~~va~d~---~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           22 LPGQVSGVALDS---KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             CCSCEEEEEECT---TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred             ecCCceEEEECC---CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence            356788999986   89998888887                        468999999998877665 45567899999


Q ss_pred             CCCCcEEEEecCCCeEEEEeCCCCc-EEEEee----------cCCeEEEEEECC-CCCEEEEee-CCCcEEEeeCCCCCC
Q 024676           70 DANALFSASGSADFTAKLWDALTGD-EKHSFE----------HKHIVRACAFSE-DTHLLLTGG-FEKILRIFDLNRPDA  136 (264)
Q Consensus        70 ~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~l~s~~-~d~~i~~~d~~~~~~  136 (264)
                      ++++.++++...++.|++||..... .+..+.          +-.....++++| ++.++++.+ .++.|++|+.. +..
T Consensus        99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~  177 (329)
T 3fvz_A           99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF  177 (329)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE
Confidence            9999988999999999999976542 344442          223578999999 788888776 58999999943 332


Q ss_pred             CCeEecc----------CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEE
Q 024676          137 PPREVGN----------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYIT  203 (264)
Q Consensus       137 ~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~  203 (264)
                      . ..+..          .-.....+++.++++.++++...++.|++||..+++.+..+..   ...+..++++| +..+.
T Consensus       178 ~-~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          178 V-TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFA  255 (329)
T ss_dssp             E-EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred             E-EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEE
Confidence            2 22211          1123678888887678888888889999999998988877742   34688899999 43333


Q ss_pred             Ee--------CCCcEEEEECCCceeeeEEec----CCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          204 TA--------DGSSVKFWDANHFGLVKGYNM----PCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       204 ~~--------~~~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ..        .+..|++||..+++.+..+..    -..+..+++.++ |.++++...++.|++|+.+
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEE
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCC
Confidence            22        234799999999998888742    123456677774 7899999999999999975

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=4.4e-17  Score=137.37  Aligned_cols=240  Identities=10%  Similarity=0.017  Sum_probs=160.9

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEE--ECCCCcEEEE------------
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC--LDANALFSAS------------   78 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~--~~~~~~~l~s------------   78 (264)
                      .+|...+..+.|+|   ||++|+.++.++.+++||+.+++....+..+.+.+....  +++++.+++.            
T Consensus        77 ~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           77 EGRGDNTFGGFLSP---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             CSSCBCSSSCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             eCCCCCccceEEcC---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence            45555665678885   999999999999999999999987666666666664444  4899988763            


Q ss_pred             ----------ecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECC-CCCEEEEeeCC------CcEEEeeCCCCCCCCeEe
Q 024676           79 ----------GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFE------KILRIFDLNRPDAPPREV  141 (264)
Q Consensus        79 ----------~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~  141 (264)
                                .+.+..|.+||+.+++......+...+..+.|+| +++.|+.+..+      ..+.++|+..+..  ..+
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~~l  231 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM--RKV  231 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC--EES
T ss_pred             ccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce--EEe
Confidence                      2345789999999998777767777889999999 99988876653      3677778764432  233


Q ss_pred             ccCC--CCeEEEEEecCCCeEEEEeeCCC----eEEEEECCCCceeEEecCCCC------EEEEEEcCCCcEEEE-----
Q 024676          142 GNSS--GSIRTVAWLHSDQTILSSCTDSG----GVRLWDARSGKIVQTLETKSP------VTSAEVSRDGRYITT-----  204 (264)
Q Consensus       142 ~~~~--~~i~~~~~~~~~~~~~~~~~~d~----~v~iwd~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~-----  204 (264)
                      ....  ..+...+|+|++..++..+..++    .|.+||+++++..........      .....|+|||+.++.     
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred             eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence            2222  24667889998887755444322    399999999875332221110      111368999976653     


Q ss_pred             -----eCCCcEEEEECCCceeeeEEecCC-----------CCceeeEcCCCCCEEE-EecCCCeEEEEEcC
Q 024676          205 -----ADGSSVKFWDANHFGLVKGYNMPC-----------NTESASLEPKLGNIFI-AGGEDMWVHVFDFH  258 (264)
Q Consensus       205 -----~~~~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~gs~d~~v~vwd~~  258 (264)
                           ..+..|.+||+.+++.........           ......+.|+ |+.|+ ++..++...+|.++
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spD-g~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPD-DKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             -----CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTT-SSEEEEEECTTSSCEEEEEE
T ss_pred             cccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCC-CCEEEEEecCCCceeEEEEE
Confidence                 224589999998876533222222           2345677775 65555 55567777777544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=1.6e-17  Score=147.96  Aligned_cols=226  Identities=15%  Similarity=0.066  Sum_probs=153.0

Q ss_pred             ccC-CCeeeeEeccCCCCCeEEEEEeC---CCCcEEEeCCC---CceEEeeeCCcCCEEEEEECCCC--cEEEEecCCCe
Q 024676           14 GHS-RPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANA--LFSASGSADFT   84 (264)
Q Consensus        14 ~h~-~~v~~~~~~~~~~~g~~l~t~s~---d~~v~i~~~~~---~~~~~~~~~H~~~V~~v~~~~~~--~~l~s~s~D~~   84 (264)
                      .|. ..+..+.|+|   | +.+++++.   +...++|....   +... .+..+. .+...+|+|++  ..+++++.|+.
T Consensus        61 ~~~~~~~~~~~~sp---d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~  134 (582)
T 3o4h_A           61 REPINSVLDPHYGV---G-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV  134 (582)
T ss_dssp             SSCCSEECEECTTC---S-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE
T ss_pred             cccccccccccCCC---C-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc
Confidence            444 5888999985   7 78887776   45556654432   3322 332221 22244666655  45677777765


Q ss_pred             EEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC----CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeE
Q 024676           85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        85 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  160 (264)
                      . +||+.+++......+..  ..+.|+|+++.+++++.+    ..|++||+.+++.  ..+..+.+.+...+|+|++..+
T Consensus       135 ~-l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~~~~~~~~SpDG~~l  209 (582)
T 3o4h_A          135 A-LYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEGSFSSASISPGMKVT  209 (582)
T ss_dssp             E-EEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC--EEECCSSCEEEEEEECTTSCEE
T ss_pred             e-EEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc--eEeecCCCccccceECCCCCEE
Confidence            5 99999887666555444  788999999999988877    7899999987654  3555667788999999988766


Q ss_pred             EEEeeCCC--eEEEEECCCCceeEEecC-CCCEEEEE--------EcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC
Q 024676          161 LSSCTDSG--GVRLWDARSGKIVQTLET-KSPVTSAE--------VSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC  228 (264)
Q Consensus       161 ~~~~~~d~--~v~iwd~~~~~~~~~~~~-~~~v~~~~--------~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~  228 (264)
                      + ++..++  .|.+||+++++.. .+.. ...+..+.        |+|||.++++ ..++.+++|++  ++.....  ..
T Consensus       210 ~-~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~--~~  283 (582)
T 3o4h_A          210 A-GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP--QG  283 (582)
T ss_dssp             E-EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC--SS
T ss_pred             E-EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC--CC
Confidence            6 666677  8999999999877 4433 23344455        9999976655 45789999999  5544311  12


Q ss_pred             CCceeeEcCCCCCEEEEecCCCe---EEEEEcC
Q 024676          229 NTESASLEPKLGNIFIAGGEDMW---VHVFDFH  258 (264)
Q Consensus       229 ~~~~~~~~~~~~~~~~~gs~d~~---v~vwd~~  258 (264)
                      .....++.  +++++++++.+..   +++||..
T Consensus       284 ~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          284 NHGRVVLW--RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEEE--TTEEEEEEEETTEEEEEEEETTC
T ss_pred             ceEEEEec--CCEEEEEEcCCCCCCeEEEEcCC
Confidence            22345555  5788888877744   6666654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=8.5e-16  Score=128.56  Aligned_cols=226  Identities=11%  Similarity=0.059  Sum_probs=147.2

Q ss_pred             CCeEEEEEeC----CCCcEEEe--CCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC----CeEEEEeCCC--CcE--
Q 024676           30 DGFFLVSASK----DSSPMLRN--GETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALT--GDE--   95 (264)
Q Consensus        30 ~g~~l~t~s~----d~~v~i~~--~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D----~~v~iwd~~~--~~~--   95 (264)
                      ...+++.|+.    ++.+.+|.  ..++++......|......++|+||++++++++.+    +.+.+|++..  +..  
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~   91 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL   91 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence            3456666644    56788875  46676432221266677889999999999888875    7999998765  432  


Q ss_pred             EEEee-cCCeEEEEEECCCCCEEEEee-CCCcEEEeeCCCCCCCC---eEecc----------CCCCeEEEEEecCCCeE
Q 024676           96 KHSFE-HKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPP---REVGN----------SSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        96 ~~~~~-~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~---~~~~~----------~~~~i~~~~~~~~~~~~  160 (264)
                      +.... +......+++  ++++|++++ .++.+.+|++.......   .....          ....+..++|+|++..+
T Consensus        92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence            22222 3345666666  777777776 57899999986432211   11100          12234778999988878


Q ss_pred             EEEeeCCCeEEEEECCCCc-------e-------eEEecCCCCEEEEEEcCCCcEEE-Ee-CCCcEEEEECCCcee--ee
Q 024676          161 LSSCTDSGGVRLWDARSGK-------I-------VQTLETKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGL--VK  222 (264)
Q Consensus       161 ~~~~~~d~~v~iwd~~~~~-------~-------~~~~~~~~~v~~~~~s~~~~~l~-~~-~~~~i~iwd~~~~~~--~~  222 (264)
                      ++++..++.|++|++....       .       .........+..++|+|+|+++. +. .++.|.+||+.+++.  +.
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~  249 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ  249 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence            8777777899999887543       1       22233445678999999998664 44 368999999986643  33


Q ss_pred             EEec-C---CCCceeeEcCCCCCEEEE-ecC-CCeEEEEEcC
Q 024676          223 GYNM-P---CNTESASLEPKLGNIFIA-GGE-DMWVHVFDFH  258 (264)
Q Consensus       223 ~~~~-~---~~~~~~~~~~~~~~~~~~-gs~-d~~v~vwd~~  258 (264)
                      .+.. +   ..+..+.++|+ +++|++ ... ++.|.+|+++
T Consensus       250 ~~~~~~~~~~~~~~i~~spd-g~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPD-GKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTT-SSEEEEEECSSSCEEEEEEEC
T ss_pred             EEecCCCCCCCcccEEECCC-CCEEEEECCCCCCEEEEEEEc
Confidence            3322 1   11336677775 776655 444 5899999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=1.5e-15  Score=123.66  Aligned_cols=239  Identities=10%  Similarity=0.023  Sum_probs=168.9

Q ss_pred             EeeccCCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           11 VCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ++..+.....+++|+|   +|+ .++++..++.+..|+..++  ...+..+...+.++++++++.++++...++.|.+||
T Consensus        22 ~l~~~~~~~eg~~~d~---~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVP---ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             EEECCCSSEEEEEEEG---GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             EEecCCccccCCeEeC---CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            3445666677899996   787 7888899999999999877  567777888899999999999888888889999999


Q ss_pred             CCCCcEEEEeec-----CCeEEEEEECCCCCEEEE----eeC-------------CCcEEEeeCCCCCCCCeEeccCCCC
Q 024676           90 ALTGDEKHSFEH-----KHIVRACAFSEDTHLLLT----GGF-------------EKILRIFDLNRPDAPPREVGNSSGS  147 (264)
Q Consensus        90 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~  147 (264)
                      ..+++.......     ...++.++++|+++++++    ++.             .+.+..++.. ++  ..........
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~  173 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVK  173 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSS
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCC
Confidence            988775443321     123567899999998887    331             2345555543 22  2233334456


Q ss_pred             eEEEEEecCCCeEEEEeeCCCeEEEEECC-CCce---eEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee
Q 024676          148 IRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKI---VQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK  222 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~---~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~  222 (264)
                      ...++|.+++..+ ++...++.|.+||+. +++.   ...+. ....+..++++++|+++++. ++.|.+||.. ++.+.
T Consensus       174 ~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~  250 (296)
T 3e5z_A          174 PNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELG  250 (296)
T ss_dssp             EEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEE
T ss_pred             CccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEE
Confidence            6889998887766 777777899999997 5554   22331 22345678999999987777 7899999986 66777


Q ss_pred             EEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          223 GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .+..+..+....+..++++.|+.++.++ +.-++.++.+
T Consensus       251 ~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          251 RVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             EEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             EEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            7777655666677544566677776664 4445555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=2.6e-16  Score=132.17  Aligned_cols=228  Identities=11%  Similarity=0.070  Sum_probs=151.5

Q ss_pred             CCCeEEEEEe------CCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec----------CCCeEEEEeCCC
Q 024676           29 PDGFFLVSAS------KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALT   92 (264)
Q Consensus        29 ~~g~~l~t~s------~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s----------~D~~v~iwd~~~   92 (264)
                      ++++++....      .|+.+.+||..+++.+.++..+..+  .++|+||+++++.++          .+++|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            4666666653      4778999999999998888877666  799999999987765          367899999999


Q ss_pred             CcEEEEeec-------CCeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           93 GDEKHSFEH-------KHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        93 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      ++.+..+..       ......++++|++++|+++..  ++.|.+||+.+.+.....+. .. ....+...|.+...+++
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~  168 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMT  168 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEE
Confidence            887777652       234567889999999998874  58899999987643211011 11 11112223333222223


Q ss_pred             eeCCCe------------------------------------------------EEEEECCCCce--eEEecCC------
Q 024676          164 CTDSGG------------------------------------------------VRLWDARSGKI--VQTLETK------  187 (264)
Q Consensus       164 ~~~d~~------------------------------------------------v~iwd~~~~~~--~~~~~~~------  187 (264)
                      .+.||.                                                |.++|+...+.  ...+...      
T Consensus       169 ~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~  248 (361)
T 2oiz_A          169 ICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA  248 (361)
T ss_dssp             EETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred             ECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence            333344                                                44444433221  1111100      


Q ss_pred             -----CCEEEEEEcCCCcEE-EEeC-----------CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCC
Q 024676          188 -----SPVTSAEVSRDGRYI-TTAD-----------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (264)
Q Consensus       188 -----~~v~~~~~s~~~~~l-~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~  250 (264)
                           ....-++++|++..+ ++..           +..|.+||+.+++.+..+..+. +..+.++|+ ++++++++. +
T Consensus       249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spd-g~~l~v~n~-~  325 (361)
T 2oiz_A          249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQ-RNLMLTLDG-G  325 (361)
T ss_dssp             TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETT-TTEEEEECS-S
T ss_pred             cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCC-CCEEEEeCC-C
Confidence                 001126789997654 3322           2479999999999999998877 888888885 777777776 9


Q ss_pred             eEEEEEcCcc--eee
Q 024676          251 WVHVFDFHTG--EQI  263 (264)
Q Consensus       251 ~v~vwd~~~g--~~i  263 (264)
                      .|.+||..++  +.+
T Consensus       326 ~v~v~D~~t~~l~~~  340 (361)
T 2oiz_A          326 NVNVYDISQPEPKLL  340 (361)
T ss_dssp             CEEEEECSSSSCEEE
T ss_pred             eEEEEECCCCcceee
Confidence            9999999999  764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=1.5e-16  Score=143.49  Aligned_cols=238  Identities=11%  Similarity=-0.007  Sum_probs=151.4

Q ss_pred             eeEeccCCCCCeE-EEEEeC-CCCcEEEeCC--C-CceEEeeeC-----CcCCEEEEEECCCCcEEEEecCC--------
Q 024676           21 DLFYSPITPDGFF-LVSASK-DSSPMLRNGE--T-GDWIGTFEG-----HKGAVWSCCLDANALFSASGSAD--------   82 (264)
Q Consensus        21 ~~~~~~~~~~g~~-l~t~s~-d~~v~i~~~~--~-~~~~~~~~~-----H~~~V~~v~~~~~~~~l~s~s~D--------   82 (264)
                      ...|+ .+|||++ |+.++. +..+.+++..  . ++ ...+..     |...+..++|+||++.|++++.|        
T Consensus        81 ~~~~~-~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           81 PWAGV-PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CEEEE-CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred             cceee-eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence            44454 1358988 665554 4455555655  2 43 344544     67788999999999999988877        


Q ss_pred             --CeEEEEeCCC------CcEEEEe-ecCCeEEEEEECCCCCEEEEeeCCC--------cEEEeeCC-CCC--CCCeEec
Q 024676           83 --FTAKLWDALT------GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEK--------ILRIFDLN-RPD--APPREVG  142 (264)
Q Consensus        83 --~~v~iwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~--------~i~~~d~~-~~~--~~~~~~~  142 (264)
                        ..|++||+.+      +...... .+...+..+.|+|+++.|+.++.++        .|.+||+. ++.  .......
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             ceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence              5899999988      6554444 4556788899999999999877553        79999997 341  1112223


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceeEEecCCCC---------EEEEEEcCCCcEEEEeCCCcEE
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSP---------VTSAEVSRDGRYITTADGSSVK  211 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~~~~i~  211 (264)
                      .+...+..++|+|++. +++++..++  .|.+||+.+++.......+..         +..++++|++++++++..+.++
T Consensus       239 ~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~  317 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAV  317 (662)
T ss_dssp             ETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCE
T ss_pred             CCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccE
Confidence            3456788899999887 666666667  677777777765443332211         4568899999887654337888


Q ss_pred             EE--ECCCceeeeEEecCCCCceeeEcCCCCCE-EEEecCCCe--EEEEEcCccee
Q 024676          212 FW--DANHFGLVKGYNMPCNTESASLEPKLGNI-FIAGGEDMW--VHVFDFHTGEQ  262 (264)
Q Consensus       212 iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gs~d~~--v~vwd~~~g~~  262 (264)
                      ||  |+..++ ++.+..+.......+.++.+.+ +++++.+..  |++||+.+|+.
T Consensus       318 l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          318 LGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            88  655554 4444443322221113333333 444555554  55556666653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=3.5e-16  Score=141.10  Aligned_cols=243  Identities=11%  Similarity=-0.026  Sum_probs=162.7

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEE--eCCCCcEEEeCCCCceEEeeeCCcCCEE---------EEEEC--CCCcE-EE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVW---------SCCLD--ANALF-SA   77 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~--s~d~~v~i~~~~~~~~~~~~~~H~~~V~---------~v~~~--~~~~~-l~   77 (264)
                      +.+|...+..++|++   ++.+++..  +.++...+|....+...+.+..|...+.         ...|+  ||+++ ++
T Consensus        19 ~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           19 VASRSGRPACVGAVG---DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHTCSCCEEEEEET---TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HhhcCCccceeEEcC---CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            357999999999995   77777777  5678888998544444556666666655         55565  89987 66


Q ss_pred             Eec-CCCeEEEEeCC--C-CcEEEEee-----cCCeEEEEEECCCCCEEEEeeCC----------CcEEEeeCCC-----
Q 024676           78 SGS-ADFTAKLWDAL--T-GDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFE----------KILRIFDLNR-----  133 (264)
Q Consensus        78 s~s-~D~~v~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d----------~~i~~~d~~~-----  133 (264)
                      .++ .+..|.+|++.  + +.......     +...+..++|+|+++.|++++.+          ..|++||+.+     
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            544 35667777766  3 44333323     45568899999999999988877          5799999976     


Q ss_pred             -CCCCCeEec-cCCCCeEEEEEecCCCeEEEEeeCC-------CeEEEEECC-CC---ceeEEecC-CCCEEEEEEcCCC
Q 024676          134 -PDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDS-------GGVRLWDAR-SG---KIVQTLET-KSPVTSAEVSRDG  199 (264)
Q Consensus       134 -~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d-------~~v~iwd~~-~~---~~~~~~~~-~~~v~~~~~s~~~  199 (264)
                       ++  ...+. .....+..++|+|++..++.+..+.       ..|.+||+. ++   +....... ...+..+.|+|||
T Consensus       176 ~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          176 RSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             GGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             CCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence             33  23333 3344566778999888776555442       479999999 57   43333333 4578899999999


Q ss_pred             cEEEEeC-CC--cEEEEECCCceeeeEEecCCC---------CceeeEcCCCCCEEEEecCCCeEEEE--EcCcce
Q 024676          200 RYITTAD-GS--SVKFWDANHFGLVKGYNMPCN---------TESASLEPKLGNIFIAGGEDMWVHVF--DFHTGE  261 (264)
Q Consensus       200 ~~l~~~~-~~--~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gs~d~~v~vw--d~~~g~  261 (264)
                      +++++++ ++  .|.+||+.+++..........         .....+.+ +++++++++. +.+++|  |+.+++
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred             eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc
Confidence            9665554 55  566677655554322222111         12345555 5888999988 999999  655554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=3.8e-14  Score=117.11  Aligned_cols=231  Identities=10%  Similarity=0.044  Sum_probs=159.4

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC----CeEEE
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKL   87 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D----~~v~i   87 (264)
                      +.++...+.+++|+|   +|++++++..++.|.+|+..+++....+..+...+.++++++++.++++...+    +.|.+
T Consensus        40 ~~~~~~~~~~~~~~~---~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDR---QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EESSCCCEEEEEECT---TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             EeccCccccCcEECC---CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            345666778899985   88888888999999999999888665554567789999999999888877766    68999


Q ss_pred             EeCCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeC------CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCC
Q 024676           88 WDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        88 wd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~------d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  158 (264)
                      ||..++.....+.   ....++.+.++|+++++++...      .+.+..++..+++.  ............+++.+++.
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEESSEEEEEECTTSS
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE--EEeecCCCcccceEECCCCC
Confidence            9988876543332   3456889999999988876653      24455555543322  22212223467788888777


Q ss_pred             eEEEEeeCCCeEEEEECCC-CceeEE--------ecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCC
Q 024676          159 TILSSCTDSGGVRLWDARS-GKIVQT--------LETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC  228 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~-~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~  228 (264)
                      .++++...++.|.+||+++ ++.+..        +.....+..++++++|+++++. .++.|.+||. +++.+..+..+.
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~  273 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  273 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC
Confidence            6766666668999999964 332211        1222357889999999877664 4678999998 466667776553


Q ss_pred             -------CCceeeEcCCCCCEEEEecCC
Q 024676          229 -------NTESASLEPKLGNIFIAGGED  249 (264)
Q Consensus       229 -------~~~~~~~~~~~~~~~~~gs~d  249 (264)
                             .+..+++.++ +..|+.++.+
T Consensus       274 ~~~g~~~~~~~~~~~~d-g~~L~v~~~~  300 (333)
T 2dg1_A          274 RDEGHMLRSTHPQFIPG-TNQLIICSND  300 (333)
T ss_dssp             GGGTCSCBCCEEEECTT-SCEEEEEEEC
T ss_pred             CccccccCcceEEECCC-CCEEEEEeCc
Confidence                   3556677664 5444433333

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=9e-17  Score=135.54  Aligned_cols=237  Identities=13%  Similarity=0.050  Sum_probs=152.6

Q ss_pred             eeeeEeccCCCCCeEEEEEeCC-C--CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           19 VVDLFYSPITPDGFFLVSASKD-S--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d-~--~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      +..++|+|   ||++|+..+.. +  .+.+|+..+++......++......+.|+||+++|+.++.++.+.+||+.+++.
T Consensus        38 ~~~~~~Sp---dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQ---DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBCT---TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eecCcCCC---CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence            66677775   99988776543 3  567778888876544443333333377999999999999899999999998876


Q ss_pred             EEEee-cCCeEEE-------------------EEECCCCCEEEEe-----eCCCcEEEeeCCCCCCCCeEeccCCCCeEE
Q 024676           96 KHSFE-HKHIVRA-------------------CAFSEDTHLLLTG-----GFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (264)
Q Consensus        96 ~~~~~-~~~~v~~-------------------~~~~~~~~~l~s~-----~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~  150 (264)
                      ..... +......                   +.++|+++.++..     ..+..|.+||+.+++.  .........+..
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~  192 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLGH  192 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEEE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCccccc
Confidence            55554 2222222                   3457777766544     3566799999987653  222234556788


Q ss_pred             EEEec-CCCeEEEEeeCC-----CeEEEEECCCCceeEEecC--CCCEEEEEEcCCCcEEEE-eCC-----CcEEEEECC
Q 024676          151 VAWLH-SDQTILSSCTDS-----GGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITT-ADG-----SSVKFWDAN  216 (264)
Q Consensus       151 ~~~~~-~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~-~~~-----~~i~iwd~~  216 (264)
                      +.|+| ++..++......     ..|.+||+.+++.......  ...+..+.|+|+|++|+. +.+     +.|.+||+.
T Consensus       193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence            89998 455444433221     3688899877654332232  124778899999986543 221     339999998


Q ss_pred             CceeeeEEecCCCCceeeEcCCCCCEEEEec----------------CCCeEEEEEcCccee
Q 024676          217 HFGLVKGYNMPCNTESASLEPKLGNIFIAGG----------------EDMWVHVFDFHTGEQ  262 (264)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs----------------~d~~v~vwd~~~g~~  262 (264)
                      +++.......+. . ...+.+.+++++++++                .+..|++||+.+++.
T Consensus       273 ~g~~~~l~~~~~-~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          273 TLENEEVMVMPP-C-SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             TCCEEEEEECCS-E-EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CCCeEEeeeCCC-C-CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            876443332222 1 2566663477777654                347899999987753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=2.3e-15  Score=137.15  Aligned_cols=243  Identities=9%  Similarity=-0.045  Sum_probs=162.2

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCC-----CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCe----
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDS-----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT----   84 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~-----~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~----   84 (264)
                      +|+..+..+.|+|   ||++||.++.++     .+++||+.+++.+.....+ ..+..++|+||++.|+.++.|+.    
T Consensus       122 ~~~~~~~~~~~SP---Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSE---DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECT---TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECC---CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccc
Confidence            3545677888885   999998776544     7999999999876532222 23567899999999988887766    


Q ss_pred             ------------EEEEeCCCCcE--EEEee---cCCeEEEEEECCCCCEEEEeeC-----CCcEEEeeCCC------CCC
Q 024676           85 ------------AKLWDALTGDE--KHSFE---HKHIVRACAFSEDTHLLLTGGF-----EKILRIFDLNR------PDA  136 (264)
Q Consensus        85 ------------v~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~s~~~-----d~~i~~~d~~~------~~~  136 (264)
                                  |++|++.++..  ...+.   +...+..+.|+|++++|+.++.     +..+.+||+.+      +..
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                        99999988752  22332   3445788999999999887764     57899999876      432


Q ss_pred             CCeEeccCCCCeEEEEEecCCCeEEEEeeCC---CeEEEEECCCCce--eEE-ecCCC--CEEEEEEcCCCcEEEEe-CC
Q 024676          137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKI--VQT-LETKS--PVTSAEVSRDGRYITTA-DG  207 (264)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~--~~~-~~~~~--~v~~~~~s~~~~~l~~~-~~  207 (264)
                      ....+..+...... .|.+++..+++....+   ..|.+||+.+++.  ... +.+..  .+..+.+++++.++++. .+
T Consensus       278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            33444444444443 4677777776665433   3699999988742  222 33322  57788898777766554 45


Q ss_pred             C--cEEEEECCCceeeeEEecCCCC-ceeeEcCCCCCEEEEec---CCCeEEEEEcCcce
Q 024676          208 S--SVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGG---EDMWVHVFDFHTGE  261 (264)
Q Consensus       208 ~--~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs---~d~~v~vwd~~~g~  261 (264)
                      +  .|.+||+.+++.++.+..+... ..+.+.++...++++.+   ..+.++.||+.+|+
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            5  4777888777766666655222 23344554334444433   35789999998876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=1.6e-15  Score=125.78  Aligned_cols=233  Identities=7%  Similarity=0.005  Sum_probs=165.1

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~   98 (264)
                      ...+.+.    +++..++...++.+.++|..+++.++++.. ......+++++++...++...++.|.+||..+++....
T Consensus        46 ~~~i~~~----~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           46 AQSMVIR----DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             EEEEEEE----TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ceEEEEE----CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            4456664    466667777789999999999999888863 35678899988886666665899999999999887776


Q ss_pred             eecCC------eEEEEEECCCCCEEEEee--CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC---
Q 024676           99 FEHKH------IVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS---  167 (264)
Q Consensus        99 ~~~~~------~v~~~~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d---  167 (264)
                      ++...      ....+++ . ++.++.+.  .++.|.++|+.+++......  .......+++.+++ .+++++..+   
T Consensus       121 i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~--~g~~p~~i~~~~dG-~l~v~~~~~~~~  195 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELT--IGIQPTSLVMDKYN-KMWTITDGGYEG  195 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEE--CSSCBCCCEECTTS-EEEEEBCCBCTT
T ss_pred             EEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEE--cCCCccceEEcCCC-CEEEEECCCccC
Confidence            65443      4455666 3 44555554  48899999998765432222  12233456666655 456555543   


Q ss_pred             -------CeEEEEECCCCceeEEecC--CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec---CCCCceeeE
Q 024676          168 -------GGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM---PCNTESASL  235 (264)
Q Consensus       168 -------~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~  235 (264)
                             +.|.++|.++++....+..  ......++++|+++++..++. .|.+||..+++.......   ...+..+++
T Consensus       196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v  274 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTV  274 (328)
T ss_dssp             CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred             CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence                   7899999999988766653  346889999999887766554 899999988765321111   133455677


Q ss_pred             cCCCCCEEEEe----cCCCeEEEEEcCcceee
Q 024676          236 EPKLGNIFIAG----GEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       236 ~~~~~~~~~~g----s~d~~v~vwd~~~g~~i  263 (264)
                      .|..+.++++.    ..++.|.+||.+ |+.+
T Consensus       275 dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          275 NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             CTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             cCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            77678888888    789999999987 7754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.74  E-value=8.4e-18  Score=153.16  Aligned_cols=232  Identities=10%  Similarity=0.061  Sum_probs=153.0

Q ss_pred             CeeeeEeccCCCCCeEEEEEeC---------CCCcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676           18 PVVDLFYSPITPDGFFLVSASK---------DSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~---------d~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      .+..++|+|   ||++|+.++.         |+.+++||+.+++.+  ..+   ...+..++|+|||++++.++ |+.|+
T Consensus        61 ~~~~~~~Sp---Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~  133 (719)
T 1z68_A           61 NASNYGLSP---DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIY  133 (719)
T ss_dssp             TCSEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred             ceeeEEECC---CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEE
Confidence            388999996   9999999887         789999999988763  223   24688899999999998875 78999


Q ss_pred             EEeCCCCcEEEEee--cCCeE-----------------EEEEECCCCCEEEEeeCCC-----------------------
Q 024676           87 LWDALTGDEKHSFE--HKHIV-----------------RACAFSEDTHLLLTGGFEK-----------------------  124 (264)
Q Consensus        87 iwd~~~~~~~~~~~--~~~~v-----------------~~~~~~~~~~~l~s~~~d~-----------------------  124 (264)
                      +||+.++.......  +...+                 ..++|+|+++.|++++.|.                       
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            99998887544321  22222                 4799999999999987652                       


Q ss_pred             -----------cEEEeeCCCCCCC----C---eEeccCCCCeEEEEEecCCCeEEEEeeCC----CeEEEEE----CCCC
Q 024676          125 -----------ILRIFDLNRPDAP----P---REVGNSSGSIRTVAWLHSDQTILSSCTDS----GGVRLWD----ARSG  178 (264)
Q Consensus       125 -----------~i~~~d~~~~~~~----~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~d----~~v~iwd----~~~~  178 (264)
                                 .+++||+.+++..    .   ..+..+...+..++|+|++ .++++..+.    ..|.+||    +.++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCC
Confidence                       7889998765421    0   0112355678899999984 555553322    2488899    8887


Q ss_pred             ceeEEe-----cCCCCEE-----EEEEcCCCcEEE--Ee-CCC--cEEEEECCCceeeeEEecC-CCCceeeEcCCCCCE
Q 024676          179 KIVQTL-----ETKSPVT-----SAEVSRDGRYIT--TA-DGS--SVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNI  242 (264)
Q Consensus       179 ~~~~~~-----~~~~~v~-----~~~~s~~~~~l~--~~-~~~--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  242 (264)
                      ++...+     .+...+.     .+.|+|||+.++  ++ .++  .|.+||+.+.+ .+.+... .......+. +.+.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i  370 (719)
T 1z68_A          293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSL  370 (719)
T ss_dssp             ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEE
T ss_pred             ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEE
Confidence            754333     1223344     678999997432  33 344  57778887655 2333222 122233334 43444


Q ss_pred             EEEecC----CCeEEEEEcCc
Q 024676          243 FIAGGE----DMWVHVFDFHT  259 (264)
Q Consensus       243 ~~~gs~----d~~v~vwd~~~  259 (264)
                      ++++..    ++..++|.+..
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEecCCCCCceEEEEEEeC
Confidence            445544    47889997653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=1.6e-15  Score=127.47  Aligned_cols=218  Identities=11%  Similarity=0.082  Sum_probs=147.1

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeCC------cCCEEEEEECCCCcEEE
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH------KGAVWSCCLDANALFSA   77 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~H------~~~V~~v~~~~~~~~l~   77 (264)
                      .+..+  .++|+|   ||++|++++          .++.|.+||..+++.++++...      ......++++||+++++
T Consensus        49 ~g~~p--~i~~sp---dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           49 TAFNG--HVQVSN---DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             CCEEE--EEEECT---TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             CCCCC--ceEECC---CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            44455  788885   999998886          3677999999999888877532      23456789999999998


Q ss_pred             EecC--CCeEEEEeCCCCcEEEE-eecCCeEEEEEECCCC-CEEEEeeCCCcEEEeeCCC--------------------
Q 024676           78 SGSA--DFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNR--------------------  133 (264)
Q Consensus        78 s~s~--D~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~d~~~--------------------  133 (264)
                      +++.  +++|.+||+.+++.+.. +..... ..+.+.|++ ..+++.+.|+.+.+|+++.                    
T Consensus       124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~  202 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP  202 (361)
T ss_dssp             EEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred             EECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence            7763  68999999999987777 554332 113334433 3444445555555544422                    


Q ss_pred             ----------------------------CCCCCeE-ec--c----C----CCCeEEEEEecCCCeEEEEee---------
Q 024676          134 ----------------------------PDAPPRE-VG--N----S----SGSIRTVAWLHSDQTILSSCT---------  165 (264)
Q Consensus       134 ----------------------------~~~~~~~-~~--~----~----~~~i~~~~~~~~~~~~~~~~~---------  165 (264)
                                                  ....... ..  .    .    ......+++.+++..++++..         
T Consensus       203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~  282 (361)
T 2oiz_A          203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK  282 (361)
T ss_dssp             BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred             eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence                                        1100000 00  0    0    000011466776677666554         


Q ss_pred             -CCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCc--eeeeEE-ecCCCCceeeEcCC
Q 024676          166 -DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF--GLVKGY-NMPCNTESASLEPK  238 (264)
Q Consensus       166 -~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~--~~~~~~-~~~~~~~~~~~~~~  238 (264)
                       ..++|.+||+++++.+..+.... +..++++|+|+++.++.++.|.+||..++  +.++.+ .....+..+.+.|+
T Consensus       283 ~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          283 FPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             CCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred             CCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence             13489999999999999887766 88999999999887665689999999999  988886 45556666777774

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=1.2e-15  Score=128.68  Aligned_cols=234  Identities=9%  Similarity=0.007  Sum_probs=152.4

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEE-------------------EEECCCCcEEEEe--
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-------------------CCLDANALFSASG--   79 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~-------------------v~~~~~~~~l~s~--   79 (264)
                      .+.|+|   ||++|+.++.++.+.+|+..+++....+..+.+....                   +.|+|++..++..  
T Consensus        85 ~~~~sp---dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           85 GGFIST---DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             TCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             cceECC---CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            367775   9999999999999999999988766555555443322                   3456777665443  


Q ss_pred             ---cCCCeEEEEeCCCCcEEEEeecCCeEEEEEECC-CCCEEEEeeCC------CcEEEeeCCCCCCCCeEeccC--CCC
Q 024676           80 ---SADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFE------KILRIFDLNRPDAPPREVGNS--SGS  147 (264)
Q Consensus        80 ---s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~~~--~~~  147 (264)
                         ..+..|.+||+.+++......+...+..+.|+| +++.++..+.+      ..|.+||+..+..  ..+..+  ...
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~  239 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV--RKIKEHAEGES  239 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC--EESSCCCTTEE
T ss_pred             ccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce--eEeeccCCCcc
Confidence               456789999999988766667777889999999 78767665543      3588888765432  222222  224


Q ss_pred             eEEEEEecCCCeEEEEeeCC----CeEEEEECCCCceeEEecCCCCEEEEEEcC-CCcEEEEe-----------------
Q 024676          148 IRTVAWLHSDQTILSSCTDS----GGVRLWDARSGKIVQTLETKSPVTSAEVSR-DGRYITTA-----------------  205 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~-----------------  205 (264)
                      +..++|+|++..++.+...+    +.|.+||+++++........ ... ..|+| +|++++.+                 
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred             ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence            67788998887766554432    34999999988754433222 233 88999 99877653                 


Q ss_pred             CCCcEEEEECCCceeeeEEecCC-----------CCceeeEcCCCCCEEEEec-CCCeEEEE--EcCccee
Q 024676          206 DGSSVKFWDANHFGLVKGYNMPC-----------NTESASLEPKLGNIFIAGG-EDMWVHVF--DFHTGEQ  262 (264)
Q Consensus       206 ~~~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~gs-~d~~v~vw--d~~~g~~  262 (264)
                      .+..|.+||+.+++.........           ......+.++ ++.|+..+ .++...+|  ++.++++
T Consensus       318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPN-DDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             CCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTT-SSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             CCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccC-CCeEEEEecCCCCceEEEEEEccccc
Confidence            23679999998776432222222           1234567774 66666544 45554454  5555543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=5.1e-15  Score=122.37  Aligned_cols=237  Identities=14%  Similarity=0.044  Sum_probs=162.4

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      ..|..+.|+|   ++..++..+.++.++.|   .++....+..+...+.+++|++++.+++++..++.|.+||..+++..
T Consensus         6 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSG---KSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCCBCCSCG---GGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             cccceeeecC---CccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            3477888886   55666777888899999   35556677777778899999999998888889999999999888765


Q ss_pred             EEe-ecCCeEEEEEECCCCCEEEEeeCC----CcEEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeC----
Q 024676           97 HSF-EHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTD----  166 (264)
Q Consensus        97 ~~~-~~~~~v~~~~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~----  166 (264)
                      ... .+...+..++++|+++++++...+    +.|.+||.+++....... ......+..+++.+++. ++++...    
T Consensus        80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~  158 (333)
T 2dg1_A           80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYST  158 (333)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTT
T ss_pred             EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEecccccc
Confidence            544 456679999999999988877666    689999987654321111 12234678888887664 4444432    


Q ss_pred             --CCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEe-CCCcEEEEECCC-ceeeeEE------ecC--CCCcee
Q 024676          167 --SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANH-FGLVKGY------NMP--CNTESA  233 (264)
Q Consensus       167 --d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~-~~~~~~~------~~~--~~~~~~  233 (264)
                        .+.|..+|..+++..........++.++++|+++.+ ++. .++.|.+||+.+ +..+..+      ...  ..+..+
T Consensus       159 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i  238 (333)
T 2dg1_A          159 NPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC  238 (333)
T ss_dssp             BCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCce
Confidence              246777777665544333333457889999999754 443 357899999863 2222211      111  123345


Q ss_pred             eEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .+.+ .+.++++...++.|++||. +|+.
T Consensus       239 ~~d~-~G~l~v~~~~~~~v~~~d~-~g~~  265 (333)
T 2dg1_A          239 CIDS-DDNLYVAMYGQGRVLVFNK-RGYP  265 (333)
T ss_dssp             EEBT-TCCEEEEEETTTEEEEECT-TSCE
T ss_pred             EECC-CCCEEEEEcCCCEEEEECC-CCCE
Confidence            6666 4788888878899999997 4543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=3.8e-15  Score=125.12  Aligned_cols=226  Identities=12%  Similarity=0.146  Sum_probs=145.2

Q ss_pred             EEEEEeCC--CCcEEE--eCCCCceE--Eeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC-CCcEEEEeecC--
Q 024676           33 FLVSASKD--SSPMLR--NGETGDWI--GTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGDEKHSFEHK--  102 (264)
Q Consensus        33 ~l~t~s~d--~~v~i~--~~~~~~~~--~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~--  102 (264)
                      +|+.|+..  +.|.+|  |..++++.  .... ++...+..++|+|+++++++++.+ .|.+|++. +++......+.  
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            35556553  456665  45566542  2221 233467789999999999888888 99999987 67654433321  


Q ss_pred             CeEEEEEECCCCCE--EEEee-------------CCCcEEEeeCCC-CCCCCeEec----cCCCCeEEEEEecCCCeEEE
Q 024676          103 HIVRACAFSEDTHL--LLTGG-------------FEKILRIFDLNR-PDAPPREVG----NSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus       103 ~~v~~~~~~~~~~~--l~s~~-------------~d~~i~~~d~~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~  162 (264)
                      ..+..++++|+++.  ++++.             .++.+.+|+++. ++.. ....    .+...+..++|+|++..+++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            22445789999984  45553             689999999863 3322 1111    23456888999998877666


Q ss_pred             EeeCCCeEEEEECC-CCcee--EEec---CCCCEEEEEEcCCCcEEEE-eC-CCcEEEEECC--Cceee---eEEe-cCC
Q 024676          163 SCTDSGGVRLWDAR-SGKIV--QTLE---TKSPVTSAEVSRDGRYITT-AD-GSSVKFWDAN--HFGLV---KGYN-MPC  228 (264)
Q Consensus       163 ~~~~d~~v~iwd~~-~~~~~--~~~~---~~~~v~~~~~s~~~~~l~~-~~-~~~i~iwd~~--~~~~~---~~~~-~~~  228 (264)
                      +...++.|++||+. +++..  ..+.   +...+..++|+|+|+++.. .. ++.|.+|++.  +++..   ..+. .+.
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence            65556799999998 77643  2333   2456889999999987654 43 5789999764  44432   2222 111


Q ss_pred             -------------CCceee-EcCCCCCEEEEecCC-C-----eEEEEEcC-cce
Q 024676          229 -------------NTESAS-LEPKLGNIFIAGGED-M-----WVHVFDFH-TGE  261 (264)
Q Consensus       229 -------------~~~~~~-~~~~~~~~~~~gs~d-~-----~v~vwd~~-~g~  261 (264)
                                   .+..+. ++| +|++|++++.+ .     .|++|+++ +|+
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             CcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence                         134566 677 47766655432 2     89999986 554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=1.6e-14  Score=116.82  Aligned_cols=210  Identities=12%  Similarity=0.079  Sum_probs=154.2

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCc-CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecC--CeEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVR  106 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~-~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~v~  106 (264)
                      .++.|++++.|+.|.+||.++|+.+-++..+. ..+++++++|++.++++  .++.|+.||. +++.+..+...  ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46899999999999999999999988888775 47889999999998883  4778999998 88888888743  4788


Q ss_pred             EEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeEecc-----CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce
Q 024676          107 ACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGN-----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (264)
Q Consensus       107 ~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~  180 (264)
                      .+.+.|+++++++.+. ++.+..+|. +++........     +......++..+++ .++++...++.|..||.+ |+.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-CCE
Confidence            8999999999998876 666666664 34332222111     11122233445544 566677788999999998 999


Q ss_pred             eEEecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecCC----C---CceeeEcCCCCCEEEEe
Q 024676          181 VQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC----N---TESASLEPKLGNIFIAG  246 (264)
Q Consensus       181 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~g  246 (264)
                      +..+.....+.++...++|.+++++. ++.|..+|..+++.+-.+....    .   +......+ .|.++++.
T Consensus       158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~  230 (276)
T 3no2_A          158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICN  230 (276)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEE
T ss_pred             EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEe
Confidence            98887666666788899998877654 5689999999899887775321    1   22333445 47777776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=9.5e-14  Score=122.91  Aligned_cols=229  Identities=14%  Similarity=0.136  Sum_probs=171.1

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC--CCcEEEEeecCCeEEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL--TGDEKHSFEHKHIVRA  107 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~v~~  107 (264)
                      .+.++++...++.+.++|..+++.+.++... ..++.+.|+||++++++++.|+.|.+||+.  +++.+..+........
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~  244 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  244 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence            5677888889999999999999998888643 356789999999999999999999999996  7777777776667789


Q ss_pred             EEEC----CCCCEEEEeeC-CCcEEEeeCCCCCCCCeEecc----------CCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676          108 CAFS----EDTHLLLTGGF-EKILRIFDLNRPDAPPREVGN----------SSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus       108 ~~~~----~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      +.++    |++++++++.. ++.+.++|..+.+........          ....+..+..++.+..+++...+.|+|.+
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            9999    69999988765 599999998776543222110          01245667777777777777778899999


Q ss_pred             EECCCCcee--EEecCCCCEEEEEEcCCCcEEEE-e-CCCcEEEEECCCceeeeEEec-CCCC---ceee-EcCCCCCEE
Q 024676          173 WDARSGKIV--QTLETKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFGLVKGYNM-PCNT---ESAS-LEPKLGNIF  243 (264)
Q Consensus       173 wd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~-~-~~~~i~iwd~~~~~~~~~~~~-~~~~---~~~~-~~~~~~~~~  243 (264)
                      +|..+.+.+  ..+..........|+|+|+++.. . .++.|.++|+.+++.+..... ...+   .-.. +.|+++..+
T Consensus       325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~  404 (567)
T 1qks_A          325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  404 (567)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE
Confidence            999876432  33444455778899999987644 3 357899999999998877776 3222   1223 355556666


Q ss_pred             EEec-CCCeEEEEEcCc
Q 024676          244 IAGG-EDMWVHVFDFHT  259 (264)
Q Consensus       244 ~~gs-~d~~v~vwd~~~  259 (264)
                      +++. .++.|.++|.++
T Consensus       405 ~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEBSSSSEEEEEECCT
T ss_pred             EeCCCCCCeEEEecCCC
Confidence            6654 468999999877

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=9.3e-15  Score=121.09  Aligned_cols=218  Identities=13%  Similarity=0.048  Sum_probs=156.5

Q ss_pred             CCCCcEEEeCCCCceEEeee----C--CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECC
Q 024676           39 KDSSPMLRNGETGDWIGTFE----G--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE  112 (264)
Q Consensus        39 ~d~~v~i~~~~~~~~~~~~~----~--H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~  112 (264)
                      .++++.++|..+++..+.+.    +  .......+++.. ++..++...++.|.+||..+++.+..+........+++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~   93 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS   93 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence            38899999999998766541    1  223457777754 4455666778999999999999888887666788899988


Q ss_pred             CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCC----CCeEEEEEecCCCeEEEEee-CCCeEEEEECCCCceeEEecCC
Q 024676          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS----GSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTLETK  187 (264)
Q Consensus       113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~  187 (264)
                      ++++.++...++.|.+||..+.+..........    .....+++  +++.++++.. .++.|.++|+++++.+..+...
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g  171 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG  171 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence            885555444899999999987653322211110    03344555  3566666654 3789999999999988877665


Q ss_pred             CCEEEEEEcCCCcEEEEeCC-----------CcEEEEECCCceeeeEEecC--CCCceeeEcCCCCCEEEEecCCCeEEE
Q 024676          188 SPVTSAEVSRDGRYITTADG-----------SSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGEDMWVHV  254 (264)
Q Consensus       188 ~~v~~~~~s~~~~~l~~~~~-----------~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d~~v~v  254 (264)
                      .....+.++|+|++++++.+           +.|.++|..+++.++.+..+  ..+..+++.++ ++.+..+..  .|.+
T Consensus       172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d-~~~lyv~~~--~v~~  248 (328)
T 3dsm_A          172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT-RDTLYWINN--DIWR  248 (328)
T ss_dssp             SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT-SCEEEEESS--SEEE
T ss_pred             CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC-CCEEEEEcc--EEEE
Confidence            55678899999988776543           58999999999888888764  35677888875 454444433  7999


Q ss_pred             EEcCccee
Q 024676          255 FDFHTGEQ  262 (264)
Q Consensus       255 wd~~~g~~  262 (264)
                      ||..+++.
T Consensus       249 ~d~~t~~~  256 (328)
T 3dsm_A          249 MPVEADRV  256 (328)
T ss_dssp             EETTCSSC
T ss_pred             EECCCCce
Confidence            99988764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=2.6e-14  Score=115.60  Aligned_cols=197  Identities=12%  Similarity=0.215  Sum_probs=142.4

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeC-CCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~-d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      +|...+.+|++.+  ++|+++++... ++.|.+|+ .+++.+..+. .+...+..+++++++.++++...++.|.+||..
T Consensus        74 ~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  150 (286)
T 1q7f_A           74 SQLLYPNRVAVVR--NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN  150 (286)
T ss_dssp             TCBSSEEEEEEET--TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccccCceEEEEEc--CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence            3556778888843  47777777643 88999999 5677776664 345678999999999988888889999999954


Q ss_pred             CCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccC--CCCeEEEEEecCCCeEEEEeeC
Q 024676           92 TGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        92 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                       +.....+.   +...+..++++|+++++++...++.|++||... +. ...+...  ......+++.+++ .++++...
T Consensus       151 -g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~  226 (286)
T 1q7f_A          151 -GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINSNG-EILIADNH  226 (286)
T ss_dssp             -SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECTTC-CEEEEECS
T ss_pred             -CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CE-EEEEccCCccCCCcEEEECCCC-CEEEEeCC
Confidence             55555553   334688999999999888777889999999743 22 2222222  2457788887765 56666665


Q ss_pred             CC-eEEEEECCCCceeEEecCC---CCEEEEEEcCCCcEEEEeCCCcEEEEECCCc
Q 024676          167 SG-GVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTADGSSVKFWDANHF  218 (264)
Q Consensus       167 d~-~v~iwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~  218 (264)
                      ++ .|.+||. +++.+..+...   ..+..++++|+|+++++..++.|++|+....
T Consensus       227 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          227 NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  281 (286)
T ss_dssp             SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             CCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence            55 9999995 45555555322   2377899999998887777889999997543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=7e-15  Score=133.65  Aligned_cols=238  Identities=11%  Similarity=-0.039  Sum_probs=153.6

Q ss_pred             ccCCCeeeeEeccCCCCCeEEE-----EEeCCCCcEEEeCCCCceEEeeeCCcCCE--EEEEECCCCcEEEEecCCCe--
Q 024676           14 GHSRPVVDLFYSPITPDGFFLV-----SASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDANALFSASGSADFT--   84 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~-----t~s~d~~v~i~~~~~~~~~~~~~~H~~~V--~~v~~~~~~~~l~s~s~D~~--   84 (264)
                      +|+..+..++|+|   ||++||     .|+.+..|++||+.+++.+.  ..+...+  ..++|+||++.|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SP---DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSW---DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECT---TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECC---CCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCC
Confidence            5666788899985   999998     55556789999999998641  1122222  57899999999998888876  


Q ss_pred             -----------EEEEeCCCCcE--EEEee---cCCeEEEEEECCCCCEEEEeeCCC----cEEEeeCCCCCCCCeEeccC
Q 024676           85 -----------AKLWDALTGDE--KHSFE---HKHIVRACAFSEDTHLLLTGGFEK----ILRIFDLNRPDAPPREVGNS  144 (264)
Q Consensus        85 -----------v~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~----~i~~~d~~~~~~~~~~~~~~  144 (264)
                                 |++|++.++..  ...+.   +...+..+.|+|++++|+.++.++    .+.+++..+++  ...+..+
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~  270 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKG  270 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEEC
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecC
Confidence                       99999988762  23332   335688999999999998877665    56667654433  3333333


Q ss_pred             CCCeEEEEEecCCCeEEEEee---CCCeEEEEECCCCce---eEEecC--CCCEEEEEEcCCCcEEEE-eCCCcEEEEEC
Q 024676          145 SGSIRTVAWLHSDQTILSSCT---DSGGVRLWDARSGKI---VQTLET--KSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (264)
Q Consensus       145 ~~~i~~~~~~~~~~~~~~~~~---~d~~v~iwd~~~~~~---~~~~~~--~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~  215 (264)
                      ........+ +++. +++...   .++.|.+||+.+++.   ...+..  ...+..+.++ ++.++++ ..++..+||.+
T Consensus       271 ~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          271 VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            444455555 5565 555544   257899999988753   333333  3357778888 5555544 55777666654


Q ss_pred             C-CceeeeEEecCCC--CceeeEcCCCCCEEE-E---ecCCCeEEEEEcCccee
Q 024676          216 N-HFGLVKGYNMPCN--TESASLEPKLGNIFI-A---GGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       216 ~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~---gs~d~~v~vwd~~~g~~  262 (264)
                      . .++..+.+..+..  .....+.++ +..++ +   ....+.|++||+.+|+.
T Consensus       348 ~~~g~~~~~l~~~~~~~v~~~~~s~d-~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          348 TLKGKPVRTVQLPGVGAASNLMGLED-LDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTCCEEEECCCSSSSEECCCBSCTT-CSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eCCCCeeEEecCCCCeEEEEeecCCC-CCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            3 3444454444322  123344453 55444 3   33467899999988763

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=4.5e-15  Score=135.83  Aligned_cols=205  Identities=11%  Similarity=0.053  Sum_probs=136.3

Q ss_pred             EeeccCCCee-----eeEeccCCCCCeEEEEEeCCCC---------cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE
Q 024676           11 VCHGHSRPVV-----DLFYSPITPDGFFLVSASKDSS---------PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS   76 (264)
Q Consensus        11 ~~~~h~~~v~-----~~~~~~~~~~g~~l~t~s~d~~---------v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l   76 (264)
                      ++.+|.....     .+.|+   |||++|+.++.++.         +.+||+.+++.. .+..|.+.+...+|+|||+.+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~S---pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~l  126 (740)
T 4a5s_A           51 FLENSTFDEFGHSINDYSIS---PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKL  126 (740)
T ss_dssp             EECTTTTTTCCSCCCEEEEC---TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCE
T ss_pred             EEechhhhhhcccccceEEC---CCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEE
Confidence            3456654322     25666   59999999998744         459999998754 567788899999999999999


Q ss_pred             EEecCCCeEEEEeCCCCcEEEEee--cCCeE-----------------EEEEECCCCCEEEEeeCCC-------------
Q 024676           77 ASGSADFTAKLWDALTGDEKHSFE--HKHIV-----------------RACAFSEDTHLLLTGGFEK-------------  124 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v-----------------~~~~~~~~~~~l~s~~~d~-------------  124 (264)
                      |.++ |+.|.+||..++...+...  +...+                 ..+.|+|+++.|+.++.|.             
T Consensus       127 a~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~  205 (740)
T 4a5s_A          127 AYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD  205 (740)
T ss_dssp             EEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred             EEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence            8874 7899999998876544221  11112                 2478999999999875432             


Q ss_pred             -----------------------cEEEeeCCC---CCC-CCeEec------cCCCCeEEEEEecCCCeEEEEeeC---CC
Q 024676          125 -----------------------ILRIFDLNR---PDA-PPREVG------NSSGSIRTVAWLHSDQTILSSCTD---SG  168 (264)
Q Consensus       125 -----------------------~i~~~d~~~---~~~-~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~---d~  168 (264)
                                             .+++||+.+   ++. ....+.      .+...+..++|+|++..++.....   +.
T Consensus       206 ~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~  285 (740)
T 4a5s_A          206 ESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS  285 (740)
T ss_dssp             TTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE
T ss_pred             CCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEE
Confidence                                   477888876   532 122222      145568889999987644443332   23


Q ss_pred             eEEEEECCCCc----eeE--E---ecCCCCE-----EEEEEcCCCcEEE--EeC-CC--cEEEEECCCcee
Q 024676          169 GVRLWDARSGK----IVQ--T---LETKSPV-----TSAEVSRDGRYIT--TAD-GS--SVKFWDANHFGL  220 (264)
Q Consensus       169 ~v~iwd~~~~~----~~~--~---~~~~~~v-----~~~~~s~~~~~l~--~~~-~~--~i~iwd~~~~~~  220 (264)
                      .|.+||+.+++    +..  .   -.....+     ....|+|||+.++  .++ ++  .|.+||+..++.
T Consensus       286 ~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          286 VMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             EEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             EEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            79999999987    221  1   1122222     3678999998654  332 33  688889876543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=1.8e-14  Score=119.59  Aligned_cols=222  Identities=12%  Similarity=0.061  Sum_probs=139.9

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCC---C--cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC----------
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDS---S--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----------   82 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~---~--v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D----------   82 (264)
                      .+..+.|+|   ||++|+.++.++   .  +.+|+..+++.......+ . +..++|+||++.++.++.+          
T Consensus        60 ~~~~~~~Sp---Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           60 NATMPRISP---DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             SCEEEEECT---TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred             cCCCeEECC---CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            456678885   999998887653   3  667788888765544434 3 8999999999988777632          


Q ss_pred             -----------------CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCC-------cEEEeeCCCCCCCC
Q 024676           83 -----------------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-------ILRIFDLNRPDAPP  138 (264)
Q Consensus        83 -----------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-------~i~~~d~~~~~~~~  138 (264)
                                       ..|.+||+.+++.+..+... .+..+.|+|++ +++++..+.       ...+|.+++++  .
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~--~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK--E  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE--E
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc--e
Confidence                             57889999888763333223 67788999999 888776542       44555544332  2


Q ss_pred             eEeccCCCCeEEEEEecCCCeEEEEeeCC-------CeEEEEECCCCceeEEecC-CCCEEE-EEEcCCCcEEEEeCCCc
Q 024676          139 REVGNSSGSIRTVAWLHSDQTILSSCTDS-------GGVRLWDARSGKIVQTLET-KSPVTS-AEVSRDGRYITTADGSS  209 (264)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-------~~v~iwd~~~~~~~~~~~~-~~~v~~-~~~s~~~~~l~~~~~~~  209 (264)
                      ..+... ..+...  +|++..++..+.++       ..|.+||  +++....... ...+.. +.|+ ++.++++..++.
T Consensus       211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~  284 (347)
T 2gop_A          211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGS  284 (347)
T ss_dssp             EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTE
T ss_pred             EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCc
Confidence            222222 444433  77777666554332       4688888  5654433333 345775 8899 883334456788


Q ss_pred             EEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeE-EEEEcC
Q 024676          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWV-HVFDFH  258 (264)
Q Consensus       210 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v-~vwd~~  258 (264)
                      ++|| +.+++...............+.+   .++++++.++.. .+|.++
T Consensus       285 ~~l~-~~~g~~~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          285 VNLY-IWDGEIKPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEE-EESSSEEEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred             EEEE-EcCCceEEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence            9999 77554433332222233455555   677777776665 778765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=8e-14  Score=111.58  Aligned_cols=237  Identities=9%  Similarity=-0.059  Sum_probs=158.0

Q ss_pred             CeeeeEeccCCCCCeEEE-EEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           18 PVVDLFYSPITPDGFFLV-SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~-t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      ...+|+++|   +|++.+ +.+.++.|.+|+..++........+...+.++++++++.+.++.. ++.|.+||..+....
T Consensus        25 ~p~~i~~~~---~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECT---TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECC---CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            556788885   788777 557788899998766543322223445678899999988777766 889999998765432


Q ss_pred             EEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676           97 HSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus        97 ~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      ... .....+..++++++++++++...++.|.+|+..+.... ............+++.+++. ++++...++.|.+||.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECT
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEec
Confidence            221 22246889999999998877777888999976443221 11111122456677777554 6666555689999999


Q ss_pred             CCCceeEEec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCCEEEEecCCCe
Q 024676          176 RSGKIVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGEDMW  251 (264)
Q Consensus       176 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d~~  251 (264)
                      .+........ ....+..++++++|.++++.. ++.|.+||........ ....  ..+..+.+.++ |.++++.+.++.
T Consensus       179 ~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~  256 (270)
T 1rwi_B          179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSD-RTVYVADRGNDR  256 (270)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTT-CCEEEEEGGGTE
T ss_pred             CCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCC-CCEEEEECCCCE
Confidence            8776543222 225688999999997776654 6789999987654322 2211  23455667764 789999999999


Q ss_pred             EEEEEcCccee
Q 024676          252 VHVFDFHTGEQ  262 (264)
Q Consensus       252 v~vwd~~~g~~  262 (264)
                      |++++....+.
T Consensus       257 v~~~~~~~~~~  267 (270)
T 1rwi_B          257 VVKLTSLEHHH  267 (270)
T ss_dssp             EEEECCCGGGS
T ss_pred             EEEEcCCCccc
Confidence            99999876553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.65  E-value=5.2e-13  Score=109.07  Aligned_cols=238  Identities=13%  Similarity=0.134  Sum_probs=161.3

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEE-------EeCCCCcEEEeCCCCceEEeee----CCcCCEEEEEECCC-CcEEEEec
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVS-------ASKDSSPMLRNGETGDWIGTFE----GHKGAVWSCCLDAN-ALFSASGS   80 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t-------~s~d~~v~i~~~~~~~~~~~~~----~H~~~V~~v~~~~~-~~~l~s~s   80 (264)
                      .+......+++|++   +|+.+++       +..++.+.+|+..+++......    ++...+.+++++++ +.+.++..
T Consensus        14 ~~~~~~~~~~~~~~---~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~   90 (314)
T 1pjx_A           14 TEDIPGAEGPVFDK---NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             ECCCTTCEEEEECT---TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred             hccCCCccCceECC---CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC
Confidence            33444556889984   7887777       6778899999988887543221    35577899999999 77666555


Q ss_pred             CCCeEEEEeCCCCcEEEE-eec-----CCeEEEEEECCCCCEEEEeeCC---------------CcEEEeeCCCCCCCCe
Q 024676           81 ADFTAKLWDALTGDEKHS-FEH-----KHIVRACAFSEDTHLLLTGGFE---------------KILRIFDLNRPDAPPR  139 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~l~s~~~d---------------~~i~~~d~~~~~~~~~  139 (264)
                      .+ .|.+||.. ++.... ...     ...+..++++++++++++...+               +.+..++.. ++.  .
T Consensus        91 ~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~--~  165 (314)
T 1pjx_A           91 RL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM--I  165 (314)
T ss_dssp             TT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE--E
T ss_pred             CC-CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE--E
Confidence            44 68889987 654433 221     1347889999999888776554               456666654 321  2


Q ss_pred             EeccCCCCeEEEEEe----cCCCeEEEEeeCCCeEEEEECC-CCce-----eEEecCC--CCEEEEEEcCCCcEEEEe-C
Q 024676          140 EVGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDAR-SGKI-----VQTLETK--SPVTSAEVSRDGRYITTA-D  206 (264)
Q Consensus       140 ~~~~~~~~i~~~~~~----~~~~~~~~~~~~d~~v~iwd~~-~~~~-----~~~~~~~--~~v~~~~~s~~~~~l~~~-~  206 (264)
                      ...........+++.    +++..++++...++.|.+||++ +++.     ...+...  ..+..++++++|+++++. .
T Consensus       166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            222222345678888    7666666666667899999986 4442     2223322  457889999999887664 5


Q ss_pred             CCcEEEEECCCceeeeEEecC-CCCceeeEcCCCCC-EEEEecCCCeEEEEEcCc
Q 024676          207 GSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGN-IFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       207 ~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~gs~d~~v~vwd~~~  259 (264)
                      ++.|..||..+++.+..+..+ ..+..+.+.+ +++ ++++...++.|..|++..
T Consensus       246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence            678999999877766667665 3455666766 466 667777778999999764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=5.8e-13  Score=110.22  Aligned_cols=202  Identities=17%  Similarity=0.151  Sum_probs=143.1

Q ss_pred             cCCEEEEEECCCCcEEEEecCC------------------------CeEEEEeCCCCcEEEEeec--CCeEEEEEECCCC
Q 024676           61 KGAVWSCCLDANALFSASGSAD------------------------FTAKLWDALTGDEKHSFEH--KHIVRACAFSEDT  114 (264)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~D------------------------~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~  114 (264)
                      -+.+.++++++++.++++.+.+                        ++|.+||..+++....+..  -.....++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3678999999999998888877                        4799999988887766542  2368899999999


Q ss_pred             CEEEEeeCCCcEEEeeCCCCCCCCeEec---------cCCCCeEEEEEecCCCeEEEEee-CCCeEEEEECCCCceeEEe
Q 024676          115 HLLLTGGFEKILRIFDLNRPDAPPREVG---------NSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTL  184 (264)
Q Consensus       115 ~~l~s~~~d~~i~~~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~  184 (264)
                      +++++...++.|++|+..........+.         .+......+++.+.++.++++.+ .++.|++|| .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            9888888889999999764422333332         12235778898875666777765 578999999 557666655


Q ss_pred             cCC-----------CCEEEEEEcCC-CcEEEEe-CCCcEEEEECCCceeeeEEecC---CCCceeeEcCC-----CCCEE
Q 024676          185 ETK-----------SPVTSAEVSRD-GRYITTA-DGSSVKFWDANHFGLVKGYNMP---CNTESASLEPK-----LGNIF  243 (264)
Q Consensus       185 ~~~-----------~~v~~~~~s~~-~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~  243 (264)
                      ...           .....++++|+ +.++++. .++.|++||..+++.+..+...   ..+..+.+.|.     .+..+
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~  261 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY  261 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence            311           23789999998 6666665 4679999999888888777543   22333444440     13333


Q ss_pred             EEecCCCeEEEEEcCcceee
Q 024676          244 IAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++.+.+..|++||..+|+.+
T Consensus       262 v~~~~~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          262 FGDQEPVQGFVMNFSSGEII  281 (329)
T ss_dssp             TTCSCCCCEEEEETTTCCEE
T ss_pred             eccCCCcEEEEEEcCCCeEE
Confidence            44445568999998888754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.64  E-value=1.1e-12  Score=110.40  Aligned_cols=227  Identities=12%  Similarity=0.031  Sum_probs=148.5

Q ss_pred             CCCeEEEEEeC--CC---CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec----------CCCeEEEEeCCCC
Q 024676           29 PDGFFLVSASK--DS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (264)
Q Consensus        29 ~~g~~l~t~s~--d~---~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s----------~D~~v~iwd~~~~   93 (264)
                      ++++++.....  ..   .|.++|..+++.+.++..-..+  .++++||+++++.+.          .++.|.+||..+.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            57777766653  22   7799999999988888644444  789999999987764          4678999999988


Q ss_pred             cEEEEeecC--------CeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           94 DEKHSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        94 ~~~~~~~~~--------~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      +.+..+...        .....+.++|++++|+.+..  ++.|.++| .+++.....+. ..+.   +.+.+.+...+++
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~~---~~~~~~~~~~~~~  182 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPTC---YHIHPGAPSTFYL  182 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCce---EEEEeCCCceEEE
Confidence            877766432        23457899999999998874  47899999 87654322021 1111   1222222222222


Q ss_pred             eeCCCeEEEE-----------------------------------------------ECCCCc--eeEEecC--------
Q 024676          164 CTDSGGVRLW-----------------------------------------------DARSGK--IVQTLET--------  186 (264)
Q Consensus       164 ~~~d~~v~iw-----------------------------------------------d~~~~~--~~~~~~~--------  186 (264)
                      ...||++.++                                               |+.++.  .+..+..        
T Consensus       183 ~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~  262 (373)
T 2mad_H          183 LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD  262 (373)
T ss_pred             EcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence            2333444444                                               443321  1111110        


Q ss_pred             ---CCCEEEEEEcCCCcEE-EEeC----------CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCC-EEEEec-CCC
Q 024676          187 ---KSPVTSAEVSRDGRYI-TTAD----------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGG-EDM  250 (264)
Q Consensus       187 ---~~~v~~~~~s~~~~~l-~~~~----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gs-~d~  250 (264)
                         ......+.++|+++.+ ++..          ++.|.++|..+++.++.+.....+..+.++++ ++ .++++. .++
T Consensus       263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~D-g~~~l~v~~~~~~  341 (373)
T 2mad_H          263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQD-GGPDLYALSAGTE  341 (373)
T ss_pred             ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCC-CCeEEEEEcCCCC
Confidence               0112336788887643 3322          24799999999999999988777888889885 55 666666 589


Q ss_pred             eEEEEEcCcceee
Q 024676          251 WVHVFDFHTGEQI  263 (264)
Q Consensus       251 ~v~vwd~~~g~~i  263 (264)
                      .|.++|+.+++.+
T Consensus       342 ~V~ViD~~t~~vv  354 (373)
T 2mad_H          342 VLHIYDAGAGDQD  354 (373)
T ss_pred             eEEEEECCCCCEE
Confidence            9999999999875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=1.2e-13  Score=111.69  Aligned_cols=187  Identities=11%  Similarity=0.152  Sum_probs=140.2

Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCcEEEEeecCC--eEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCe
Q 024676           71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKH--IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI  148 (264)
Q Consensus        71 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i  148 (264)
                      ..+..+++++.|+.|.+||.++++.+..+....  .+..+.+.|++++++  +.++.+..||. +++............+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            346788999999999999999999888887543  578899999999888  45778999998 5665544433223467


Q ss_pred             EEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-------CCEEEEEEcCCCcEEEEeC-CCcEEEEECCCcee
Q 024676          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-------SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGL  220 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~  220 (264)
                      ..+...+++..+++.+.+++.|..+|. +++.+..+...       .+...+...++|.++++.. ++.|..||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            777888877665554432677888885 67777665421       2344567889999887654 6899999998 888


Q ss_pred             eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +-.+..+..+......+ .+.++++++.++.|..+|.++|+.+
T Consensus       158 ~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          158 LNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             EEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEE
T ss_pred             EEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEE
Confidence            88888765555566665 4888999988999999999989874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=8.6e-14  Score=115.46  Aligned_cols=220  Identities=15%  Similarity=0.138  Sum_probs=138.1

Q ss_pred             CCeeeeEeccCCCCCeEEEEEe---------CCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---C-
Q 024676           17 RPVVDLFYSPITPDGFFLVSAS---------KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---F-   83 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s---------~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~-   83 (264)
                      ..+..+.+     ||++|+...         .+..+.+|+..+++.. .+    ..+..++|+||+++++..+.+   + 
T Consensus        15 ~~~~~~~~-----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT-----KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE-----ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE-----CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            34455555     677766542         2567888999888743 33    467889999999998877654   3 


Q ss_pred             -eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC---------------------------CcEEEeeCCCCC
Q 024676           84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---------------------------KILRIFDLNRPD  135 (264)
Q Consensus        84 -~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------------------------~~i~~~d~~~~~  135 (264)
                       .|.+||+.+++......... +..+.|+|+++.|+.++.+                           ..+.+||+.+++
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             ceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence             47777888887666555555 8999999999988887643                           568889987665


Q ss_pred             CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC-------eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCC
Q 024676          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-------GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADG  207 (264)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~  207 (264)
                      .. ..+.. . .+..++|+|++  ++.++..+.       ...||.+.+++....... ..+..+  +|+|+.++. +.+
T Consensus       164 ~~-~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          164 VI-EEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             EE-EEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred             EE-eeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEcc
Confidence            31 22222 2 66788899877  555444321       344444435554333333 344444  999986653 322


Q ss_pred             --------CcEEEEECCCceeeeEEecCC-CCce-eeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          208 --------SSVKFWDANHFGLVKGYNMPC-NTES-ASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       208 --------~~i~iwd~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                              ..|.+||  +++......... .... ..+.  ++ ++++++.++.+++| +.+|+
T Consensus       236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSS
T ss_pred             ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCc
Confidence                    3577777  443222111111 1222 4454  46 88899999999999 87554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.62  E-value=1.5e-11  Score=99.47  Aligned_cols=236  Identities=8%  Similarity=0.005  Sum_probs=164.0

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEe-eeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~-~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      ..+...+.+|++.|   +|+..++...++.+.+|+.. ++.... +..+...+.++++++++.+.++...++.|..||..
T Consensus        11 ~~~~~~~~~i~~d~---~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           11 TNQDTGPYGITVSD---KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CSSSCCEEEEEECT---TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCcCCCccceEECC---CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            34566788999985   88887777778899999988 664322 22355678999999999988887778899999976


Q ss_pred             CCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           92 TGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        92 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                       +.. ..+.   ....+..++++++++++++...++.+..||. +++............+..+++.+++ .+.++...++
T Consensus        87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~  162 (299)
T 2z2n_A           87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNN  162 (299)
T ss_dssp             -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTT
T ss_pred             -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCC
Confidence             332 2222   3446889999999988887777888999987 4332211112233457778877655 5555555568


Q ss_pred             eEEEEECCCCceeEE-ec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCE
Q 024676          169 GVRLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNI  242 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  242 (264)
                      .|..||. +++.... .. ....+..++++++|+++++.. ++.|..||. +++ +..+..+   ..+..+.+.++ +.+
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~~-g~l  238 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-ITEFKIPTPNARPHAITAGAG-IDL  238 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECST-TCE
T ss_pred             EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-EEEEECCCCCCCceeEEECCC-CCE
Confidence            9999999 6665432 22 234588999999998776654 578999998 554 3334433   33445566664 777


Q ss_pred             EEEecCCCeEEEEEcCcce
Q 024676          243 FIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~~g~  261 (264)
                      +++...++.|..||. +|+
T Consensus       239 ~v~~~~~~~i~~~d~-~g~  256 (299)
T 2z2n_A          239 WFTEWGANKIGRLTS-NNI  256 (299)
T ss_dssp             EEEETTTTEEEEEET-TTE
T ss_pred             EEeccCCceEEEECC-CCc
Confidence            777767888999997 454

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=3.8e-13  Score=122.27  Aligned_cols=228  Identities=10%  Similarity=-0.015  Sum_probs=146.4

Q ss_pred             CCCCeEEEEEeCCC---CcEEE--eCCCCceEEee------eCCcCCEEEEEECCCCcEEE-----EecCCCeEEEEeCC
Q 024676           28 TPDGFFLVSASKDS---SPMLR--NGETGDWIGTF------EGHKGAVWSCCLDANALFSA-----SGSADFTAKLWDAL   91 (264)
Q Consensus        28 ~~~g~~l~t~s~d~---~v~i~--~~~~~~~~~~~------~~H~~~V~~v~~~~~~~~l~-----s~s~D~~v~iwd~~   91 (264)
                      +++|.+++-...++   ...+|  +...++....+      ++|...+.+++|+||+++++     +|+.+.+|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            35888887776655   34555  33344432222      25666789999999999988     56667899999999


Q ss_pred             CCcEE-EEeecCCeEEEEEECCCCCEEEEeeCCCc-------------EEEeeCCCCCCCCeEec---cCCCCeEEEEEe
Q 024676           92 TGDEK-HSFEHKHIVRACAFSEDTHLLLTGGFEKI-------------LRIFDLNRPDAPPREVG---NSSGSIRTVAWL  154 (264)
Q Consensus        92 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-------------i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~  154 (264)
                      +++.+ ...........++|+|+++.|+.++.|..             |++|++.++........   .+...+..+.|+
T Consensus       156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence            98764 21111111157899999999999988776             99999987653222222   223467788999


Q ss_pred             cCCCeEEEEeeCC-C--eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC----CCcEEEEECCCcee--eeEEe
Q 024676          155 HSDQTILSSCTDS-G--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD----GSSVKFWDANHFGL--VKGYN  225 (264)
Q Consensus       155 ~~~~~~~~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~iwd~~~~~~--~~~~~  225 (264)
                      +++..++++..+. +  .|.+||..+++...............+ ++|.+++.++    +..|.+||+.+.+.  .+.+.
T Consensus       236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  314 (695)
T 2bkl_A          236 RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIV  314 (695)
T ss_dssp             TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred             CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence            9988877766553 2  677777766654433333334444445 4555544443    36799999977542  22222


Q ss_pred             cCC-C--CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          226 MPC-N--TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       226 ~~~-~--~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      .+. .  .....+.  .+.+++++..|+..++|.++
T Consensus       315 ~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          315 PEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             CCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred             cCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence            211 1  2233444  47889999999999998654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.57  E-value=7.7e-13  Score=121.08  Aligned_cols=242  Identities=10%  Similarity=-0.003  Sum_probs=147.6

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCC-----CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCe----
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKD-----SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT----   84 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d-----~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~----   84 (264)
                      +|+..+..+.|+|   ||++||.++.+     ..+++||+.+++.+.. ..+...+..++|+|| +.++.++.|..    
T Consensus       160 ~~~~~~~~~~~SP---DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAASD---DGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEECT---TSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC----
T ss_pred             CCCEEEEeEEECC---CCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccc
Confidence            4545677888885   99999887654     3599999999987543 112222356889999 88877776654    


Q ss_pred             ----------EEEEeCCCCcE--EEEeec---CCeEEEEEECCCCCEEEEeeCC-----CcEEEeeCCCCCCC-CeEecc
Q 024676           85 ----------AKLWDALTGDE--KHSFEH---KHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP-PREVGN  143 (264)
Q Consensus        85 ----------v~iwd~~~~~~--~~~~~~---~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~-~~~~~~  143 (264)
                                |++|++.++..  ...+..   ...+..+.|+|++++|+..+.+     ..+.+||+.++... ...+..
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence                      88999877652  233332   2357889999999988877654     37999998765222 333333


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeC---CCeEEEEECCCC--ceeEEecCC-CCEEEEEEcCCCcEEE-EeCCCcEEEEECC
Q 024676          144 SSGSIRTVAWLHSDQTILSSCTD---SGGVRLWDARSG--KIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDAN  216 (264)
Q Consensus       144 ~~~~i~~~~~~~~~~~~~~~~~~---d~~v~iwd~~~~--~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~~~i~iwd~~  216 (264)
                      ......... .++++.++.....   ++.|.+||+.++  +....+... ..+..+.++ ++.+++ ...++..+||.+.
T Consensus       315 ~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          315 DLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             CCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            333333333 4667766655432   356999999885  333333333 335567777 444444 4456666665443


Q ss_pred             -CceeeeEEecCCC--CceeeEcCCCCCEEEEe---cCCCeEEEEEcCccee
Q 024676          217 -HFGLVKGYNMPCN--TESASLEPKLGNIFIAG---GEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       217 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g---s~d~~v~vwd~~~g~~  262 (264)
                       .++..+.+..+..  .....+.++...++++.   ...+.+++||+.+|+.
T Consensus       393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence             3444555554322  22344555433444433   3468899999988763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=1.3e-11  Score=105.26  Aligned_cols=233  Identities=12%  Similarity=0.049  Sum_probs=157.9

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC--eEEEEeCCCCc
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF--TAKLWDALTGD   94 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~--~v~iwd~~~~~   94 (264)
                      .....|+|+|   +|+++++...++.|++|+..++........... .. ++|++++.+++.+..++  .|.+|+...+.
T Consensus       131 ~~P~~la~d~---~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVG---NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECS---TTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeC---CCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            4566888885   888888888888999999988876544444222 23 89999999888777765  78888877665


Q ss_pred             EEEEe----e-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE---eccCCCCe-E-EEEEecCCCeEEEEe
Q 024676           95 EKHSF----E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---VGNSSGSI-R-TVAWLHSDQTILSSC  164 (264)
Q Consensus        95 ~~~~~----~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~---~~~~~~~i-~-~~~~~~~~~~~~~~~  164 (264)
                      ....+    . ....+..++++|++..|+.+..++.|..||..++......   .....+.. . .+++.|.++.++++.
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            43333    2 3345678899995555666777888999998765421110   11111222 2 788888778888887


Q ss_pred             eCCCeEEEEECCCCceeEEecC---------------CCCEEEEEEcCCCcEEEEe--CCCcEEEEECCCceeeeEEecC
Q 024676          165 TDSGGVRLWDARSGKIVQTLET---------------KSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      ..++.|+.||.... .......               -.....++++|+|+++++.  .+..|+.||+.++.. .++...
T Consensus       286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~  363 (409)
T 3hrp_A          286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ  363 (409)
T ss_dssp             TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred             CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence            77789999998754 2111111               1347889999999876664  457899999777653 333221


Q ss_pred             ----------------CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          228 ----------------CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       228 ----------------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                                      ..+..+++.++ +.++++-..++.|+.+.+
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence                            12345566665 888888888888888765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=3.1e-12  Score=103.98  Aligned_cols=201  Identities=14%  Similarity=0.112  Sum_probs=133.1

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCC----cCCEEEEEECCCCcEEEE----ecC--
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH----KGAVWSCCLDANALFSAS----GSA--   81 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H----~~~V~~v~~~~~~~~l~s----~s~--   81 (264)
                      +..+...+.+|+++|   +|+++++...++.+.+|+..+++........    ...+..+++++++.+.+|    |..  
T Consensus        64 ~~~~~~~~~~l~~~~---dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           64 EMHPSHHQNGHCLNK---QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EESSCSSEEEEEECT---TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred             EECCCCCcceeeECC---CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence            345667788999986   8888888877889999999888754333221    234567999999998887    331  


Q ss_pred             -----------CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC-CCCC-C-CeEeccCCCC
Q 024676           82 -----------DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDA-P-PREVGNSSGS  147 (264)
Q Consensus        82 -----------D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~-~~~~-~-~~~~~~~~~~  147 (264)
                                 .+.|..++.. +.......+....+.++|+|+++.+++.+.++.|.+|++. .+.. . ........+.
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  219 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK  219 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred             cccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence                       2345445544 4444444455567899999999988777778999999986 3322 1 1111122334


Q ss_pred             eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEE-cCCCcEEEEeCCCcEEEEECCCcee
Q 024676          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEV-SRDGRYITTADGSSVKFWDANHFGL  220 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~i~iwd~~~~~~  220 (264)
                      ...+++.+++. +.++.  ++.|.+||.+ ++.+..+.....+.+++| +|+++.|..+..+.+.-++.++.+.
T Consensus       220 p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~  289 (296)
T 3e5z_A          220 TDGLRVDAGGL-IWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL  289 (296)
T ss_dssp             CCSEEEBTTSC-EEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred             CCeEEECCCCC-EEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence            55677777664 54444  5899999987 666666654433788888 6888765544444555556665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=2.2e-10  Score=92.49  Aligned_cols=233  Identities=9%  Similarity=0.011  Sum_probs=155.7

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      +...+.+|++.|   +|+..++...++.+..|+.. ++. ..+.  .....+..+++++++.+.++...++.|..||. +
T Consensus        55 ~~~~~~~i~~~~---~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           55 PDAKVMCLTISS---DGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             TTCCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             ccCceeeEEECC---CCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C
Confidence            445678888885   88888887778889999876 443 2232  34567899999999988888877889999998 5


Q ss_pred             CcEEEEe-e-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           93 GDEKHSF-E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        93 ~~~~~~~-~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      +...... . ....+..+++++++++.++...++.+..||. +++............+..+++.+++. +.++...++.|
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i  206 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKI  206 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceE
Confidence            5433222 1 3356889999999988877766788999998 44332111222234567777776554 55555556899


Q ss_pred             EEEECCCCceeEE-ec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEE
Q 024676          171 RLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFI  244 (264)
Q Consensus       171 ~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  244 (264)
                      .+||. +++.... .. ....+..++++++|+++++. .++.|..||.. ++ +..+..+   ..+..+.+ + .+.+++
T Consensus       207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~-~g~l~v  281 (299)
T 2z2n_A          207 GRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-D-GETIWF  281 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-C-SSCEEE
T ss_pred             EEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-c-CCCEEE
Confidence            99999 6664332 22 23568899999999877765 46789999983 43 4455433   23444555 4 577777


Q ss_pred             EecCCCeEEEEEcCcce
Q 024676          245 AGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       245 ~gs~d~~v~vwd~~~g~  261 (264)
                      +.+ .+.+..++.++++
T Consensus       282 ~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          282 AME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EET-TTEEEEEEEC---
T ss_pred             Eec-CCcEEEEEcCccc
Confidence            665 4567777776654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=1.6e-11  Score=108.62  Aligned_cols=191  Identities=16%  Similarity=0.131  Sum_probs=142.3

Q ss_pred             CCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCC--CCCCCCeEeccCCCC
Q 024676           70 DANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN--RPDAPPREVGNSSGS  147 (264)
Q Consensus        70 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~--~~~~~~~~~~~~~~~  147 (264)
                      ++.+.++++...+++|.++|..+++.+..+.....+..+.++|+++++++++.|+.+.+||+.  +.+.. ..+. ....
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-~~i~-~G~~  241 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-AEIK-IGSE  241 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE-EEEE-CCSE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe-EEEe-cCCC
Confidence            345667788999999999999999999888877778899999999999999999999999995  44332 2222 2234


Q ss_pred             eEEEEEe----cCCCeEEEEeeCCCeEEEEECCCCceeEEecCC------------CCEEEEEEcCCCcE-EEEe-CCCc
Q 024676          148 IRTVAWL----HSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------------SPVTSAEVSRDGRY-ITTA-DGSS  209 (264)
Q Consensus       148 i~~~~~~----~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------------~~v~~~~~s~~~~~-l~~~-~~~~  209 (264)
                      ...++++    |++..++++...+++|.|+|..+.+.+..+...            ..+..+..++++.. ++.. +++.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            5678888    577788888888899999999999988766421            24778888988754 4443 4689


Q ss_pred             EEEEECCCcee--eeEEecCCCCceeeEcCCCCCEE-EEecCCCeEEEEEcCcceee
Q 024676          210 VKFWDANHFGL--VKGYNMPCNTESASLEPKLGNIF-IAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       210 i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~gs~d~~v~vwd~~~g~~i  263 (264)
                      |.++|....+.  +..+.....+....+.++ +++| ++...++.|.++|+++++.+
T Consensus       322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EEEEecCCCccceeeeeeccccccCceECCC-CCEEEEEeCCCCeEEEEECCCCcEE
Confidence            99999876432  333433334445667775 6654 55667889999999998764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.52  E-value=5.1e-12  Score=115.06  Aligned_cols=232  Identities=12%  Similarity=0.033  Sum_probs=144.3

Q ss_pred             CCCeEEEEEeCCC-C--cEEE--eCCCCceEEee------eCCcCCEEEEEECCCCcEEEEecCCC-----eEEEEeCCC
Q 024676           29 PDGFFLVSASKDS-S--PMLR--NGETGDWIGTF------EGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALT   92 (264)
Q Consensus        29 ~~g~~l~t~s~d~-~--v~i~--~~~~~~~~~~~------~~H~~~V~~v~~~~~~~~l~s~s~D~-----~v~iwd~~~   92 (264)
                      |+|.+++-...++ .  -.+|  +...++....+      .+|...+..++|+||+++++.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            5787776554433 1  1344  33344332111      23555688899999999987654433     899999999


Q ss_pred             CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCc----------------EEEeeCCCCCCCCeEecc---CCCCeEEEEE
Q 024676           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI----------------LRIFDLNRPDAPPREVGN---SSGSIRTVAW  153 (264)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~----------------i~~~d~~~~~~~~~~~~~---~~~~i~~~~~  153 (264)
                      ++..........+..+.|+|+++.|+.++.++.                |++|++.++.........   +......+.|
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            986653322222567899999999999888766                999999766432222211   2344678899


Q ss_pred             ecCCCeEEEEeeC----CCeEEEEECCC------Cc-eeEEec-CCCCEEEEEEcCCCcEEE-EeC-C---CcEEEEECC
Q 024676          154 LHSDQTILSSCTD----SGGVRLWDARS------GK-IVQTLE-TKSPVTSAEVSRDGRYIT-TAD-G---SSVKFWDAN  216 (264)
Q Consensus       154 ~~~~~~~~~~~~~----d~~v~iwd~~~------~~-~~~~~~-~~~~v~~~~~s~~~~~l~-~~~-~---~~i~iwd~~  216 (264)
                      +|++..++.+...    +..|.+||+.+      ++ ....+. ....+.. .++|+|..|+ .+. +   ..|.+||+.
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~  319 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT  319 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            9988887766542    46899999987      53 233333 3333333 4788886543 333 2   368999998


Q ss_pred             Cce--eeeEEecCCC---CceeeEcCCCCCEEEEecCCCeE--EEEEcCccee
Q 024676          217 HFG--LVKGYNMPCN---TESASLEPKLGNIFIAGGEDMWV--HVFDFHTGEQ  262 (264)
Q Consensus       217 ~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~gs~d~~v--~vwd~~~g~~  262 (264)
                      +.+  ..+.+..+..   .....+.+ .+.+++++..|+..  ++||+.+|+.
T Consensus       320 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~  371 (710)
T 2xdw_A          320 DPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL  371 (710)
T ss_dssp             SCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             CCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE
Confidence            763  1233322211   22345553 47788889888854  5567656653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.52  E-value=2.7e-12  Score=107.64  Aligned_cols=237  Identities=13%  Similarity=0.065  Sum_probs=155.7

Q ss_pred             eeEeccCCCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeCC-------cCCEEEEEECCCCcEEEEecC--
Q 024676           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDANALFSASGSA--   81 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~H-------~~~V~~v~~~~~~~~l~s~s~--   81 (264)
                      .++++|   ||++|..++          .++.|.+||..+++.++++.--       ...-+.++|+||+++++.+..  
T Consensus        82 ~va~sp---DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~  158 (386)
T 3sjl_D           82 NPVVAD---DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  158 (386)
T ss_dssp             EEEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             cEEECC---CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC
Confidence            388885   999887765          3678999999999988877421       112356889999998876653  


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC-CCCCCeE---eccCCCCeE-EEEEecC
Q 024676           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPPRE---VGNSSGSIR-TVAWLHS  156 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~-~~~~~~~---~~~~~~~i~-~~~~~~~  156 (264)
                      +++|.++|+.+++.+.+++....  ...+....+.+++.+.|+.+-+.++.. +......   +.....++. ...|.+.
T Consensus       159 ~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~  236 (386)
T 3sjl_D          159 APAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK  236 (386)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred             CCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC
Confidence            68999999999998888865443  122322445666777788877777765 3321100   000111221 1244444


Q ss_pred             CCeEEEEeeCCCeEEEEECCCCce--eEEec--------C---CCCEEEEEEcCCCcEE-EE-eC---------CCcEEE
Q 024676          157 DQTILSSCTDSGGVRLWDARSGKI--VQTLE--------T---KSPVTSAEVSRDGRYI-TT-AD---------GSSVKF  212 (264)
Q Consensus       157 ~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~--------~---~~~v~~~~~s~~~~~l-~~-~~---------~~~i~i  212 (264)
                      ++.++.. +.+++|.+.|+.++..  +..+.        .   ......+.++|+++.+ +. ..         ++.|-+
T Consensus       237 dG~~~~v-s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          237 AGRLVWP-TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TTEEEEE-BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCcEEEE-eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            5544443 3468999999987652  22222        0   1123346778887654 32 21         247999


Q ss_pred             EECCCceeeeEEecCCCCceeeEcCCCC-CEEEEecCCCeEEEEEcCcceee
Q 024676          213 WDANHFGLVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .|+.+++.++.+.....+..+.++++.. .++++...++.|.++|..+++.+
T Consensus       316 iD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          316 LDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            9999999999998876677888888643 34555677999999999999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=1.3e-10  Score=94.61  Aligned_cols=222  Identities=10%  Similarity=0.048  Sum_probs=150.2

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~   99 (264)
                      -+..|+|  .++..+++...++.|..|+..+++.. .+. ....+.++++++++.++++.  +..|.+||..++......
T Consensus        16 Egp~w~~--~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           16 ESPVWEE--VSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             EEEEEET--TTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             cCCeEEC--CCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEE
Confidence            3678886  35677788888899999999887652 332 34678999999999966654  567999998887644333


Q ss_pred             ec-----CCeEEEEEECCCCCEEEEeeCC---------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676          100 EH-----KHIVRACAFSEDTHLLLTGGFE---------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus       100 ~~-----~~~v~~~~~~~~~~~l~s~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      ..     ...++.+.++|+++++++....         ..-.+|.+..... ...........+.++|++++..++++.+
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~  168 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYIDS  168 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEecC
Confidence            22     2347889999999977754322         2345555542211 1222222234577899988887777777


Q ss_pred             CCCeEEEEEC--CCCcee-----EEec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCC-CCceeeE
Q 024676          166 DSGGVRLWDA--RSGKIV-----QTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-NTESASL  235 (264)
Q Consensus       166 ~d~~v~iwd~--~~~~~~-----~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~  235 (264)
                      .++.|.+||+  .+++..     ..+. ....+..+++.++|++.++. .++.|..||..+++.+..+..+. .+.+++|
T Consensus       169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f  248 (297)
T 3g4e_A          169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF  248 (297)
T ss_dssp             GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred             CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence            7789999987  455432     1222 12457889999999876664 46789999999888888888773 5566777


Q ss_pred             c-CCCCCEEEEecC
Q 024676          236 E-PKLGNIFIAGGE  248 (264)
Q Consensus       236 ~-~~~~~~~~~gs~  248 (264)
                      . ++.+.++++.+.
T Consensus       249 ~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          249 GGKNYSEMYVTCAR  262 (297)
T ss_dssp             ESGGGCEEEEEEBC
T ss_pred             eCCCCCEEEEEcCC
Confidence            6 544556666544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.51  E-value=8.9e-12  Score=113.22  Aligned_cols=239  Identities=16%  Similarity=0.085  Sum_probs=150.0

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEE-----EeCCCCcEEEeCCCCceEEe-eeCCcCCEEEEEECCCCcEEEEecCCC----
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVS-----ASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADF----   83 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t-----~s~d~~v~i~~~~~~~~~~~-~~~H~~~V~~v~~~~~~~~l~s~s~D~----   83 (264)
                      +|+..+..+.|+|   ||++||-     |+.+..++++|+.+|+.+.. +.+.  ....++|+ |++.|+.++.|.    
T Consensus       126 ~~~~~l~~~~~Sp---Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFSR---DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEECT---TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC--
T ss_pred             CCcEEEEEEEECC---CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccc
Confidence            5666788888885   9998873     33335789999999986543 2221  12457899 999888777774    


Q ss_pred             ---------eEEEEeCCCCcE--EEEeec----CCeEEEEEECCCCCEEEEee----CCCcEEEeeCCCCCCCCeEeccC
Q 024676           84 ---------TAKLWDALTGDE--KHSFEH----KHIVRACAFSEDTHLLLTGG----FEKILRIFDLNRPDAPPREVGNS  144 (264)
Q Consensus        84 ---------~v~iwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~l~s~~----~d~~i~~~d~~~~~~~~~~~~~~  144 (264)
                               .|++|++.++..  ...+..    ...+..+.++|++++|+...    .++.+.++|+.++......+...
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence                     499999887642  333332    23467889999999886433    23589999998765444444444


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCC---CeEEEEECCCCce--eEEe-cCCCCEEEEEEcCCCcEEEEe--CCC--cEEEEE
Q 024676          145 SGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKI--VQTL-ETKSPVTSAEVSRDGRYITTA--DGS--SVKFWD  214 (264)
Q Consensus       145 ~~~i~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~--~~~--~i~iwd  214 (264)
                      ....... +.++++.+++....+   +.|..+|+.++..  ...+ .+...+.  .+++++.+|+..  .++  .|++||
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            4444433 566677766655443   6799999988754  2233 3333333  788888766543  343  688999


Q ss_pred             CCCceeeeEEecCCCCc--eeeEcCCCCCEEEEecC---CCeEEEEEcCccee
Q 024676          215 ANHFGLVKGYNMPCNTE--SASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQ  262 (264)
Q Consensus       215 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gs~---d~~v~vwd~~~g~~  262 (264)
                      +... ..+.+..+....  .....++...++++.+.   -+.++.||+.+|+.
T Consensus       357 ~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          357 YEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             TTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             CCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            8744 344454433222  22334443445544433   27899999887753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=9.1e-12  Score=99.51  Aligned_cols=199  Identities=8%  Similarity=-0.086  Sum_probs=136.5

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      +...+.+|++.|   +|+.+++.. ++.+.+|+...+... .+. .....+..+++++++.+.++...++.|.+|+..+.
T Consensus        65 ~~~~p~~i~~~~---~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  139 (270)
T 1rwi_B           65 GLYQPQGLAVDG---AGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK  139 (270)
T ss_dssp             SCCSCCCEEECT---TCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC
T ss_pred             CcCCcceeEECC---CCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc
Confidence            334567888885   787666655 888999998765433 232 23356889999999988888788889999986655


Q ss_pred             cEEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676           94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus        94 ~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      ...... .....+..++++++++++++...++.|.+||....... ............+++.+++ .+.++...++.|.+
T Consensus       140 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          140 TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVK  217 (270)
T ss_dssp             SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEE
T ss_pred             eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCC-CEEEEECCCCcEEE
Confidence            432221 22235678899999997777777889999998654321 1111122456778877765 66666666689999


Q ss_pred             EECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCcee
Q 024676          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL  220 (264)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~  220 (264)
                      ||..+........ ....+..++++|+|+++++. .++.|+++++...+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            9997765433222 22468899999999876664 468999999865543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.48  E-value=1.2e-09  Score=88.21  Aligned_cols=235  Identities=8%  Similarity=0.005  Sum_probs=161.1

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-eeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      .....+.+|.+.+   +|+..++...++.+.+++.. ++... .+..+...+.++++++++.+.++...++.|..+|.. 
T Consensus        17 ~~~~~p~~i~~d~---~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           17 IPDSGPYGITSSE---DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             STTCCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCcceeeECC---CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            3455677888885   78888887788999999988 66543 233344678999999999888887778899999987 


Q ss_pred             CcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           93 GDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        93 ~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      +... .+.   ....+..++++++++++++...++.+..+|.. ++...............+++.+++. +.++...++.
T Consensus        92 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~  168 (300)
T 2qc5_A           92 GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNS  168 (300)
T ss_dssp             SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTE
T ss_pred             CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCe
Confidence            5442 232   23568899999999988877667889999876 4322111222334567777776555 5555555688


Q ss_pred             EEEEECCCCceeEE-ec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEE
Q 024676          170 VRLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIF  243 (264)
Q Consensus       170 v~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  243 (264)
                      |..+|. +++.... .. ....+..++++++|.+.++.. ++.|..||. +++. ..+..+   ..+..+.+.++ +.++
T Consensus       169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~~-g~l~  244 (300)
T 2qc5_A          169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI-SEYDIPTPNARPHAITAGKN-SEIW  244 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECST-TCEE
T ss_pred             EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE-EEEECCCCCCCceEEEECCC-CCEE
Confidence            999998 5554432 21 234588999999998777654 467999998 4332 233332   23445566664 7777


Q ss_pred             EEecCCCeEEEEEcCcce
Q 024676          244 IAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~  261 (264)
                      ++...++.|..||. +|+
T Consensus       245 v~~~~~~~i~~~~~-~g~  261 (300)
T 2qc5_A          245 FTEWGANQIGRITN-DNT  261 (300)
T ss_dssp             EEETTTTEEEEECT-TSC
T ss_pred             EeccCCCeEEEECC-CCc
Confidence            77777788999987 443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=1e-10  Score=95.57  Aligned_cols=230  Identities=11%  Similarity=0.056  Sum_probs=150.4

Q ss_pred             eeccCCCeeeeEeccCCCCCe-EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           12 CHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~-~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      +..+..-..+..|+|   +|+ ++++...++.+..|+. +++ ...+..+.+.+..+++++++.++++...++.|.+|+.
T Consensus        40 l~~~~~~~egp~~~~---~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           40 LYDQATWSEGPAWWE---AQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             EECCCSSEEEEEEEG---GGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             EecCCcCccCCeEeC---CCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            334445556788886   776 6677778889999988 455 3455556678899999999998777667788999997


Q ss_pred             CCCcEEEEeec-----CCeEEEEEECCCCCEEEE----eeC-------------CCcEEEeeCCCCCCCCeEeccCCCCe
Q 024676           91 LTGDEKHSFEH-----KHIVRACAFSEDTHLLLT----GGF-------------EKILRIFDLNRPDAPPREVGNSSGSI  148 (264)
Q Consensus        91 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~i  148 (264)
                      . +........     ...++.+.++|++++.++    |..             .+.|..+|..+++..  ... .....
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~--~~~-~~~~p  190 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ--RMA-DLDHP  190 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE--EEE-EESSE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE--EEe-cCCCC
Confidence            5 543222211     123567899999998886    432             245666776555432  222 23345


Q ss_pred             EEEEEecCCCeEEEEeeC-----CCeEEEEECCCCcee--EEe-c-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCce
Q 024676          149 RTVAWLHSDQTILSSCTD-----SGGVRLWDARSGKIV--QTL-E-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG  219 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~-----d~~v~iwd~~~~~~~--~~~-~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~  219 (264)
                      ..++|++++..++++...     .+.|.+||+..+...  ..+ . .......+++.++|++.++.. +.|.+||. .++
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-~gv~~~~~-~g~  268 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG-TGVCVFDS-DGQ  268 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-SEEEEECT-TSC
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC-CcEEEECC-CCC
Confidence            778898887766665444     268999998765411  111 1 122345688999999766654 45999998 566


Q ss_pred             eeeEEecCCCCceeeEcCCCCCEEEEecCCCeEE
Q 024676          220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVH  253 (264)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~  253 (264)
                      .+..+..+..+...++.++ +..|..++.++..+
T Consensus       269 ~~~~~~~~~~~~~~~f~~d-~~~L~it~~~~l~~  301 (305)
T 3dr2_A          269 LLGHIPTPGTASNCTFDQA-QQRLFITGGPCLWM  301 (305)
T ss_dssp             EEEEEECSSCCCEEEECTT-SCEEEEEETTEEEE
T ss_pred             EEEEEECCCceeEEEEeCC-CCEEEEEcCCeEEE
Confidence            6777777766677778754 55555555554333

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=2.2e-12  Score=108.44  Aligned_cols=169  Identities=12%  Similarity=0.035  Sum_probs=123.3

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc---------eEE-eeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------WIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~---------~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      +++.|+.++   ...++++|+.++. .+|+....+         ... ....+.+ |..++|  |+..|+.+ .++.|++
T Consensus        39 ~~nlLais~---~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISN---SKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEET---TTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcC---CCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            588888886   5668899998865 458654322         111 1223556 999999  88888888 8899999


Q ss_pred             EeCCCCcEEE-EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           88 WDALTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        88 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      ||+.+..... ...+..++..+.+.+..  +++++.||.+.+||+..+...  .   +...+.+++|+|.+  + +.+..
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~--~---~~~~Vs~v~WSpkG--~-~vg~~  180 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK--Q---LAQNVTSFDVTNSQ--L-AVLLK  180 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE--E---EEESEEEEEECSSE--E-EEEET
T ss_pred             EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc--c---ccCCceEEEEcCCc--e-EEEEc
Confidence            9998765333 33466678877766543  888999999999999765432  2   34579999999987  3 34566


Q ss_pred             CCeEEEEECCCCce--eEEe------c----CCCCEEEEEEcCCCcEEEE
Q 024676          167 SGGVRLWDARSGKI--VQTL------E----TKSPVTSAEVSRDGRYITT  204 (264)
Q Consensus       167 d~~v~iwd~~~~~~--~~~~------~----~~~~v~~~~~s~~~~~l~~  204 (264)
                      ||.+++|+.+.+++  ...+      .    +...|.++.|.++++++++
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            79999999988775  5555      2    3466999999999998765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.45  E-value=3.1e-11  Score=110.44  Aligned_cols=227  Identities=11%  Similarity=0.036  Sum_probs=138.3

Q ss_pred             CCCCeEEEEEeCCCC---cEEEeC--C---CCceEEe-----e-eCCcCCEEEEEECCCCcEEEEecCC-----CeEEEE
Q 024676           28 TPDGFFLVSASKDSS---PMLRNG--E---TGDWIGT-----F-EGHKGAVWSCCLDANALFSASGSAD-----FTAKLW   88 (264)
Q Consensus        28 ~~~g~~l~t~s~d~~---v~i~~~--~---~~~~~~~-----~-~~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iw   88 (264)
                      +|+|++++-...++.   ..+|-.  .   .++....     + .+|...+..++|+||+++++.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            368888877765554   555643  3   3332221     1 2354568889999999998766544     469999


Q ss_pred             eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCc--------------EEEeeCCCCCCCCeEeccC---CCCeEEE
Q 024676           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI--------------LRIFDLNRPDAPPREVGNS---SGSIRTV  151 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~--------------i~~~d~~~~~~~~~~~~~~---~~~i~~~  151 (264)
                      |+.+++.+....+...+..+.|+|+ +.|+.++.+..              |++|++.++..........   ...+..+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999986554222222356889999 88888877654              8889987654322222221   2247788


Q ss_pred             EEecCCCeEEEEeeC----CCeEEEEECCCC--c-eeEEecCCCCEEEEEEcCCCcEEE-EeC----CCcEEEEECCCce
Q 024676          152 AWLHSDQTILSSCTD----SGGVRLWDARSG--K-IVQTLETKSPVTSAEVSRDGRYIT-TAD----GSSVKFWDANHFG  219 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~----d~~v~iwd~~~~--~-~~~~~~~~~~v~~~~~s~~~~~l~-~~~----~~~i~iwd~~~~~  219 (264)
                      .|++++..++.+..+    ...|.+||+.++  + .............. ++|+|..|+ .++    ...|.+||+.+..
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~  352 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST  352 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence            899988877766643    248999999887  4 33222333333333 347776554 343    2358999987741


Q ss_pred             -eeeEE-ecCCCC-ceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          220 -LVKGY-NMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       220 -~~~~~-~~~~~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                       ..+.+ ...... ....+.  .+.++++...|+..++|.++
T Consensus       353 ~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          353 PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEE
T ss_pred             cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence             22222 222221 123333  46788899999988888554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.44  E-value=9.2e-12  Score=106.05  Aligned_cols=232  Identities=15%  Similarity=0.111  Sum_probs=146.8

Q ss_pred             CCCeEEEEEeC-C----CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec----------CCCeEEEEeCCCC
Q 024676           29 PDGFFLVSASK-D----SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (264)
Q Consensus        29 ~~g~~l~t~s~-d----~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s----------~D~~v~iwd~~~~   93 (264)
                      +++..+..+.. +    +.|.+.|..+++.+.++.--..+  .++++||+++++.+.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            56665555544 3    68999999999999888643345  799999998876654          4679999999999


Q ss_pred             cEEEEeecC--------CeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCC------CCeEEEEEecCC
Q 024676           94 DEKHSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSS------GSIRTVAWLHSD  157 (264)
Q Consensus        94 ~~~~~~~~~--------~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~------~~i~~~~~~~~~  157 (264)
                      +.+..+...        .....+.++|++++++.+..  ++.+.+.|+.+.+..........      +...-+.+++++
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence            888776532        22346789999999998874  57899999987654322211100      000011222222


Q ss_pred             CeEEEEe------------------------------------eCCCeEEEEECCCCcee--EEecC-----------CC
Q 024676          158 QTILSSC------------------------------------TDSGGVRLWDARSGKIV--QTLET-----------KS  188 (264)
Q Consensus       158 ~~~~~~~------------------------------------~~d~~v~iwd~~~~~~~--~~~~~-----------~~  188 (264)
                      ..+++..                                    ...+.|.+.|..++...  ..+..           ..
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~  319 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG  319 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence            2111111                                    12234444444333211  00000           00


Q ss_pred             CEEEEEEcCCCcEE-EE-eC---------CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCC-EEEEec-CCCeEEEE
Q 024676          189 PVTSAEVSRDGRYI-TT-AD---------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGG-EDMWVHVF  255 (264)
Q Consensus       189 ~v~~~~~s~~~~~l-~~-~~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gs-~d~~v~vw  255 (264)
                      ....+.++|+++.+ ++ ..         ++.|.+.|..+++.++.+..+..+..+.+.++ ++ .+++.. .++.|.++
T Consensus       320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spD-g~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQD-AEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCS-SSCEEEEEETTTTEEEEE
T ss_pred             CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccC-CCEEEEEEcCCCCeEEEE
Confidence            11126788887643 33 21         24799999999999999988777778888886 55 555554 69999999


Q ss_pred             EcCcceee
Q 024676          256 DFHTGEQI  263 (264)
Q Consensus       256 d~~~g~~i  263 (264)
                      |+.+++.+
T Consensus       399 D~~t~kvv  406 (426)
T 3c75_H          399 DAATGEEL  406 (426)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCCEE
Confidence            99999865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.43  E-value=6.6e-10  Score=93.49  Aligned_cols=202  Identities=13%  Similarity=0.030  Sum_probs=127.8

Q ss_pred             eeEeccCCCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeCC-------cCCEEEEEECCCCcEEEEecC--
Q 024676           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDANALFSASGSA--   81 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~H-------~~~V~~v~~~~~~~~l~s~s~--   81 (264)
                      .++++|   ||++|..+.          .++.+.++|..+++.++++.--       ...-..++|+||+++++.++.  
T Consensus        70 ~i~~sp---Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~  146 (373)
T 2mad_H           70 NPVAAH---SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CeEECC---CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC
Confidence            788885   999988886          3678999999998887766421       122357899999999887764  


Q ss_pred             CCeEEEEeCCCCcEEEE-eecCCeEEEEEECCCC-CEEEEeeCCCc----------------------------------
Q 024676           82 DFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDT-HLLLTGGFEKI----------------------------------  125 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~----------------------------------  125 (264)
                      +..|.++| .+++.+.. +.....+   .+.|.+ +.+++.+.|+.                                  
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPTCY---HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCceE---EEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEe
Confidence            57899999 99987777 6543321   111211 12222233333                                  


Q ss_pred             -------------EEEeeCCCCCCCC-eEec----------cCCCCeEEEEEecCCCeEEEEee---------CCCeEEE
Q 024676          126 -------------LRIFDLNRPDAPP-REVG----------NSSGSIRTVAWLHSDQTILSSCT---------DSGGVRL  172 (264)
Q Consensus       126 -------------i~~~d~~~~~~~~-~~~~----------~~~~~i~~~~~~~~~~~~~~~~~---------~d~~v~i  172 (264)
                                   +.+.|+....... ..+.          ........+.+.+++..++++..         ..+.|.+
T Consensus       223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence                         3333332211000 0000          00111222455665565555443         1357999


Q ss_pred             EECCCCceeEEecCCCCEEEEEEcCCCc-EEEEeC--CCcEEEEECCCceeeeEE-ecCCC
Q 024676          173 WDARSGKIVQTLETKSPVTSAEVSRDGR-YITTAD--GSSVKFWDANHFGLVKGY-NMPCN  229 (264)
Q Consensus       173 wd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~~i~iwd~~~~~~~~~~-~~~~~  229 (264)
                      +|+.+++.+..+........+.++|||+ ++.++.  ++.|.++|..+++.++.. .....
T Consensus       303 ID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~  363 (373)
T 2mad_H          303 VTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG  363 (373)
T ss_pred             EECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCC
Confidence            9999999988887766788999999998 554443  689999999999988773 44333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.41  E-value=5.9e-11  Score=99.55  Aligned_cols=228  Identities=15%  Similarity=0.149  Sum_probs=152.0

Q ss_pred             CCCeEEEEEeC-----CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec----------CCCeEEEEeCCCC
Q 024676           29 PDGFFLVSASK-----DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (264)
Q Consensus        29 ~~g~~l~t~s~-----d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s----------~D~~v~iwd~~~~   93 (264)
                      |+++.+.....     ++.+.+.|..+++.+.++..-..+ . ++++||+++++.++          .+++|.+||..++
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            68877777765     678999999999999888744445 4 99999999876654          4678999999999


Q ss_pred             cEEEEeecCC--------eEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           94 DEKHSFEHKH--------IVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        94 ~~~~~~~~~~--------~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      +.+..+....        ....+.++|++++++.+..  ++.+.++|+.+.+...... . .+.   ....|.+...+++
T Consensus       120 ~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v-~g~---~~~~P~g~~~~~~  194 (386)
T 3sjl_D          120 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-V-PDC---YHIFPTAPDTFFM  194 (386)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-C-CSE---EEEEEEETTEEEE
T ss_pred             eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-C-CCc---ceeecCCCceeEE
Confidence            9888775321        3456889999999998864  6899999998765433221 1 111   1223444434445


Q ss_pred             eeCCCeEEEEECCC-CceeEEec-C----CCCEE-EEEE-cCCCcEEEEeCCCcEEEEECCCce--eeeEEec-------
Q 024676          164 CTDSGGVRLWDARS-GKIVQTLE-T----KSPVT-SAEV-SRDGRYITTADGSSVKFWDANHFG--LVKGYNM-------  226 (264)
Q Consensus       164 ~~~d~~v~iwd~~~-~~~~~~~~-~----~~~v~-~~~~-s~~~~~l~~~~~~~i~iwd~~~~~--~~~~~~~-------  226 (264)
                      .+.||++-+.++.+ ++...... .    ..++. ...| .++|+++..+.++.+.+.|+....  .++.+..       
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence            55679999999986 66533221 1    12222 2344 478877667777899999996553  4444431       


Q ss_pred             ----CCCCceeeEcCCCCCEEEEecC---------CCeEEEEEcCcceee
Q 024676          227 ----PCNTESASLEPKLGNIFIAGGE---------DMWVHVFDFHTGEQI  263 (264)
Q Consensus       227 ----~~~~~~~~~~~~~~~~~~~gs~---------d~~v~vwd~~~g~~i  263 (264)
                          +.......+++..++++++-..         ...|.+.|+++++.+
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~  324 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL  324 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence                1222335556665666666432         357999999998865

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.40  E-value=2.7e-09  Score=88.05  Aligned_cols=221  Identities=10%  Similarity=0.027  Sum_probs=143.6

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~   99 (264)
                      -+..|+|  .++..+++...++.+..|+..+++.. .+. +...+.++++++++.++++. .+ -|.+||..+++.....
T Consensus        52 egp~~~~--~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           52 EGPTFDP--ASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEET--TTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             cCCeEeC--CCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            4678886  23567778878889999999877643 232 34578999999999887765 34 4899998887754333


Q ss_pred             ec-----CCeEEEEEECCCCCEEEEeeCC----CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676          100 EH-----KHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus       100 ~~-----~~~v~~~~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      ..     ...++.+.++|+++++++...+    ....+|.+++++.  ............++|++++..++++...++.|
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~--~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--TKLFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--EEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE--EEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            21     2358899999999977755421    2233443332321  22212223456788988877776666667899


Q ss_pred             EEEECC--CC-ce-----eEEec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCCC-CceeeEc-CC
Q 024676          171 RLWDAR--SG-KI-----VQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLE-PK  238 (264)
Q Consensus       171 ~iwd~~--~~-~~-----~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~-~~  238 (264)
                      .+||+.  ++ +.     +..+. ....+..+++.++|.+.++. .++.|..||. +++.+..+..+.. +..+++. ++
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence            999986  55 31     22222 22346789999999876665 4578999998 5666777776653 4566676 54


Q ss_pred             CCCEEEEecCC
Q 024676          239 LGNIFIAGGED  249 (264)
Q Consensus       239 ~~~~~~~gs~d  249 (264)
                      .+.++++...+
T Consensus       283 ~~~L~vt~~~~  293 (326)
T 2ghs_A          283 ASRLLVTSARE  293 (326)
T ss_dssp             SCEEEEEEBCT
T ss_pred             CCEEEEEecCC
Confidence            34455555444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.40  E-value=5.2e-09  Score=84.36  Aligned_cols=230  Identities=7%  Similarity=0.014  Sum_probs=152.8

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-eeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      +...+.+|++.+   +|++.++...++.+..++.. ++... .+......+..+++++++.+.++...++.|..+|.. +
T Consensus        60 ~~~~~~~i~~~~---~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           60 PDAKVMCLIVSS---LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             TTCCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeEEECC---CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence            345677888874   78877777777889999987 66432 222244678999999999888887778899999987 5


Q ss_pred             cEEEE-ee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           94 DEKHS-FE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        94 ~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      ..... .. ....+..+++++++++.++...++.+..++. +++............+..+++.+++ .+.++....+.|.
T Consensus       135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~  212 (300)
T 2qc5_A          135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIG  212 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEE
T ss_pred             CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEE
Confidence            44322 22 2356789999999997776666788999987 3332211111223456777777654 5555555557899


Q ss_pred             EEECCCCceeEE-ec-CCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEEE
Q 024676          172 LWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIA  245 (264)
Q Consensus       172 iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  245 (264)
                      +||. +++.... .. ....+..++++++|++.++.. ++.|..||.. ++ +..+..+   ..+..+...+ .|.++++
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~-~g~l~v~  288 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-IQEYQLQTENAEPHGITFGK-DGSVWFA  288 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEEECCSTTCCCCCEEECT-TSCEEEE
T ss_pred             EEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-EEEEECCccCCccceeEeCC-CCCEEEE
Confidence            9998 5554332 22 235588999999998776654 5789999983 33 3345443   3345566666 4776666


Q ss_pred             ecCCCeEEEEEc
Q 024676          246 GGEDMWVHVFDF  257 (264)
Q Consensus       246 gs~d~~v~vwd~  257 (264)
                      .. + .|..+|.
T Consensus       289 ~~-~-~i~~~~p  298 (300)
T 2qc5_A          289 LK-C-KIGKLNL  298 (300)
T ss_dssp             CS-S-EEEEEEE
T ss_pred             cc-C-ceEEeCC
Confidence            55 4 6777764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=1.3e-11  Score=103.84  Aligned_cols=169  Identities=13%  Similarity=0.057  Sum_probs=122.0

Q ss_pred             CEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-----------EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC
Q 024676           63 AVWSCCLDANALFSASGSADFTAKLWDALTGD-----------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~  131 (264)
                      ++..++++++..++++|+.|+ +++|++....           .....++.. |+.++|  ++++|+++ .++.+++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            688899999999999998885 6669854322           223445677 999999  88899888 8899999998


Q ss_pred             CCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEE
Q 024676          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK  211 (264)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~  211 (264)
                      ++... ......+...+..+.+.++.   ++.+..||.|.+||+.+++...   ....|.+++|||+| ..++..++.++
T Consensus       114 ~sl~~-~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~  185 (388)
T 1xip_A          114 EELSE-FRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQ  185 (388)
T ss_dssp             SSTTC-EEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSCEE
T ss_pred             hhhhc-cCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCcEE
Confidence            76542 22333455667777776553   5566788999999999887654   23479999999999 55667789999


Q ss_pred             EEECCCcee--eeEEe----------cCCCCceeeEcCCCCCEEEE
Q 024676          212 FWDANHFGL--VKGYN----------MPCNTESASLEPKLGNIFIA  245 (264)
Q Consensus       212 iwd~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~  245 (264)
                      +|+...++.  .+.+.          ......++.+.++ +.++++
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~-~~flv~  230 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP-QDFLAV  230 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS-SEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecC-CeEEEE
Confidence            998877764  44441          1233456677764 566665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.38  E-value=3.8e-11  Score=100.55  Aligned_cols=225  Identities=8%  Similarity=-0.054  Sum_probs=145.8

Q ss_pred             CeEEEEEeCCC----CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec----------CCCeEEEEeCCCCcEE
Q 024676           31 GFFLVSASKDS----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTGDEK   96 (264)
Q Consensus        31 g~~l~t~s~d~----~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~   96 (264)
                      .+..++-..++    .+.+.|..+++.+.++..-..+  .+.++||+++++.+.          .+++|.+||..+++.+
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            34556666566    6679999999999988643345  699999998887664          4789999999999988


Q ss_pred             EEeecC--------CeEEEEEECCCCCEEEEeeC--CCcEEE--eeCCCCCCCCeEeccC------------------CC
Q 024676           97 HSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRI--FDLNRPDAPPREVGNS------------------SG  146 (264)
Q Consensus        97 ~~~~~~--------~~v~~~~~~~~~~~l~s~~~--d~~i~~--~d~~~~~~~~~~~~~~------------------~~  146 (264)
                      .+++..        .....+.++|++++++.+..  ...+.+  +|+.+    ...+...                  .+
T Consensus       110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg  185 (368)
T 1mda_H          110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPA  185 (368)
T ss_dssp             EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCC
Confidence            887643        23457889999999998875  467888  88754    1111000                  00


Q ss_pred             CeEEEEE--------------------------ecCCCeEEEEeeCCCeEEEEECCCCc--eeEEecCC-----------
Q 024676          147 SIRTVAW--------------------------LHSDQTILSSCTDSGGVRLWDARSGK--IVQTLETK-----------  187 (264)
Q Consensus       147 ~i~~~~~--------------------------~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~-----------  187 (264)
                      .+..+..                          .++++.++.+. . +.|.+.|+.++.  .+..+...           
T Consensus       186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             CEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc-C-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            0000100                          12222222221 2 556666665432  22222110           


Q ss_pred             CCEEEEEEcCCCcEEE-EeC---------CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEec-CCCeEEEEE
Q 024676          188 SPVTSAEVSRDGRYIT-TAD---------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFD  256 (264)
Q Consensus       188 ~~v~~~~~s~~~~~l~-~~~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~v~vwd  256 (264)
                      .....+.++|+++.+. +..         +..+.++|+.+++.+..+..+..+..+.+.++..+++++.. .++.|.++|
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            0111267999986543 322         23567999999999998887767778888886445777777 699999999


Q ss_pred             cCcceee
Q 024676          257 FHTGEQI  263 (264)
Q Consensus       257 ~~~g~~i  263 (264)
                      +.+++.+
T Consensus       344 ~~t~kvv  350 (368)
T 1mda_H          344 AASDQDQ  350 (368)
T ss_dssp             SSSCEEE
T ss_pred             CCCCcEE
Confidence            9999875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.32  E-value=4.9e-10  Score=101.43  Aligned_cols=232  Identities=12%  Similarity=0.076  Sum_probs=149.7

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCC-c----CCEEEEEECCCCcEEEEec-----CCCeEEEEeCCCCcEEEEee
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGH-K----GAVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H-~----~~V~~v~~~~~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~  100 (264)
                      +..|+.++.|+.+..+|..+|+.+-.+..+ .    ..+.+.-...++..++..+     .++.|+.+|..+|+.+..+.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            457788899999999999999877666543 1    1111100111344433332     27999999999999887765


Q ss_pred             cCCe---------------------------------EEEEEECCCCCEEEEeeCCC-------------------cEEE
Q 024676          101 HKHI---------------------------------VRACAFSEDTHLLLTGGFEK-------------------ILRI  128 (264)
Q Consensus       101 ~~~~---------------------------------v~~~~~~~~~~~l~s~~~d~-------------------~i~~  128 (264)
                      ...+                                 ...+.++|++.+++.++.++                   .+..
T Consensus       208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A  287 (677)
T 1kb0_A          208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA  287 (677)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence            3211                                 12467888888888876653                   4888


Q ss_pred             eeCCCCCCCCeEeccCC--------CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCceeEEecCC-----------
Q 024676          129 FDLNRPDAPPREVGNSS--------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETK-----------  187 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----------  187 (264)
                      +|.++++........+.        .....+....++.  ..++.++.+|.+.++|.++|+.+..+...           
T Consensus       288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~  367 (677)
T 1kb0_A          288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKH  367 (677)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTT
T ss_pred             EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCC
Confidence            99988876655432211        1111222222332  46777788899999999999988765421           


Q ss_pred             -CCE------------------------EEEEEcCCCcEE-EEeC-----------------------------------
Q 024676          188 -SPV------------------------TSAEVSRDGRYI-TTAD-----------------------------------  206 (264)
Q Consensus       188 -~~v------------------------~~~~~s~~~~~l-~~~~-----------------------------------  206 (264)
                       .++                        ..++++|+..++ +...                                   
T Consensus       368 g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  447 (677)
T 1kb0_A          368 GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN  447 (677)
T ss_dssp             SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred             CceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence             011                        145788876554 3221                                   


Q ss_pred             --------CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          207 --------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       207 --------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                              .+.|..||+.+++.+-.+..........+.. .+.+++.++.|+.+++||.++|+++
T Consensus       448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          448 AEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             SSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCcee
Confidence                    1578999999998876666544333333433 3567777899999999999999975

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.31  E-value=3e-09  Score=90.62  Aligned_cols=195  Identities=14%  Similarity=0.138  Sum_probs=132.0

Q ss_pred             CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCC--cEEEeeCCCCCCCCe
Q 024676           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPR  139 (264)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--~i~~~d~~~~~~~~~  139 (264)
                      .....++|++++.++++...++.|+.||..++............. ++++|+++.|+++..++  .|..++...+.. ..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-eE
Confidence            356889999999988888888999999998876655544333344 89999999998888765  788888754432 12


Q ss_pred             Ee----ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEE----ecCCC---CEEEEEEcCC-CcEEEEeC-
Q 024676          140 EV----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT----LETKS---PVTSAEVSRD-GRYITTAD-  206 (264)
Q Consensus       140 ~~----~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~----~~~~~---~v~~~~~s~~-~~~l~~~~-  206 (264)
                      ..    .........+++.+.++.+++ +..++.|..||..++.....    .....   |.+.++++|+ +.++++.. 
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            22    112345567788776677666 45568999999988764322    11111   1238999995 66555543 


Q ss_pred             CCcEEEEECCCceeeeEEecC----------------CCCceeeEcCCCCCEEEEec-CCCeEEEEEcCccee
Q 024676          207 GSSVKFWDANHFGLVKGYNMP----------------CNTESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQ  262 (264)
Q Consensus       207 ~~~i~iwd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~gs-~d~~v~vwd~~~g~~  262 (264)
                      .+.|+.|+....  +..+...                ..+..+++.++ +.++++-+ .+..|+.|++.+|+.
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEE
Confidence            578999987643  2222111                12445667764 78888988 899999999777764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.31  E-value=1.4e-12  Score=109.80  Aligned_cols=191  Identities=11%  Similarity=0.027  Sum_probs=109.5

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCC--eEEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH--IVRA  107 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~v~~  107 (264)
                      ++..|++++.|+.+..||..+|+.+-.+..  +.+.+..+..++..+++++.|+.++.||..+++.+..++...  .+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567889999999999999999998766665  455555556677777888999999999998888766554221  1100


Q ss_pred             EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC
Q 024676          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK  187 (264)
Q Consensus       108 ~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~  187 (264)
                      ...-..+..+++++.|+.+..||.++++.........  .   ...+|.++.++ .++.++.|..||.++|+.+..+...
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~---~~~~p~~~~v~-~~~~dg~v~a~d~~tG~~~W~~~~~  159 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--A---DSLSPSTSLLY-LGRTEYTITMYDTKTRELRWNATYF  159 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC---------------------------EE-EEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--c---ccccccCCEEE-EEecCCEEEEEECCCCCEEEeEecc
Confidence            0000134567888889999999999887655443221  1   22344444444 4556699999999999877655421


Q ss_pred             CCEEEEEEcCC----CcEEEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676          188 SPVTSAEVSRD----GRYITTADGSSVKFWDANHFGLVKGYNMPCN  229 (264)
Q Consensus       188 ~~v~~~~~s~~----~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~  229 (264)
                      . .....++++    +.+++++.++.+..||.++++.+-.+.....
T Consensus       160 ~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~p  204 (369)
T 2hz6_A          160 D-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASP  204 (369)
T ss_dssp             E-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSC
T ss_pred             c-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCc
Confidence            1 112223332    5677777889999999999988766665433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.30  E-value=1.2e-09  Score=88.98  Aligned_cols=196  Identities=9%  Similarity=0.088  Sum_probs=128.3

Q ss_pred             cCCCeeeeEeccCCCC-CeEEEEEeCCCCcEEEeCCCCceEEe-eeC----CcCCEEEEEECCCCcEEEEecCC------
Q 024676           15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGT-FEG----HKGAVWSCCLDANALFSASGSAD------   82 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~-g~~l~t~s~d~~v~i~~~~~~~~~~~-~~~----H~~~V~~v~~~~~~~~l~s~s~D------   82 (264)
                      +...+.+++++|   + |+++++... ..+.+|+.. ++.... ...    +...+..+++++++.+.++...+      
T Consensus        69 ~~~~~~~i~~~~---~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  143 (314)
T 1pjx_A           69 YGGIPAGCQCDR---DANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD  143 (314)
T ss_dssp             EECCEEEEEECS---SSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC
T ss_pred             CCCCCceEEEec---CCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccc
Confidence            456678898885   7 776655543 467889988 765433 221    22457899999999887776655      


Q ss_pred             ---------CeEEEEeCCCCcEEEEeecCCeEEEEEEC----CCCCEEEEe-eCCCcEEEeeCC-CCCCC----CeEecc
Q 024676           83 ---------FTAKLWDALTGDEKHSFEHKHIVRACAFS----EDTHLLLTG-GFEKILRIFDLN-RPDAP----PREVGN  143 (264)
Q Consensus        83 ---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~-~~d~~i~~~d~~-~~~~~----~~~~~~  143 (264)
                               +.|..||.. +.......+......++++    |+++.++.+ ..++.|.+|+++ .+...    ......
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                     466667765 5444433444456788999    998665544 567899999975 22211    011111


Q ss_pred             CC-CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCc-EEEEeC-CCcEEEEECCC
Q 024676          144 SS-GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGR-YITTAD-GSSVKFWDANH  217 (264)
Q Consensus       144 ~~-~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~-~l~~~~-~~~i~iwd~~~  217 (264)
                      .. .....+++.+++ .+.++...++.|.+||.++++.+..+... ..+.+++++|+++ ++++.. ++.|..|++..
T Consensus       223 ~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          223 THEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            11 446677777655 56666556689999999978766655443 5688999999998 444443 46888888754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.29  E-value=2e-09  Score=97.59  Aligned_cols=232  Identities=13%  Similarity=0.106  Sum_probs=147.9

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeC--CcCCEEEEEECC---CCcEEEEec-----CCCeEEEEeCCCCcEEEEee
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDA---NALFSASGS-----ADFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~--H~~~V~~v~~~~---~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~  100 (264)
                      +..|+.++.|+.+.-+|..+|+.+-.+..  +......+..+|   ++..++..+     .|+.|..||..+|+.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            45678889999999999999987644432  111111111112   455444332     37899999999999887764


Q ss_pred             cC--C------------------------------eEEEEEECCCCCEEEEeeCCCc-------------------EEEe
Q 024676          101 HK--H------------------------------IVRACAFSEDTHLLLTGGFEKI-------------------LRIF  129 (264)
Q Consensus       101 ~~--~------------------------------~v~~~~~~~~~~~l~s~~~d~~-------------------i~~~  129 (264)
                      ..  .                              ......++|+..+++.++.++.                   +..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21  0                              0124678888889998877653                   8999


Q ss_pred             eCCCCCCCCeEecc-CC-------CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCceeEEecCCC-----------
Q 024676          130 DLNRPDAPPREVGN-SS-------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS-----------  188 (264)
Q Consensus       130 d~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------  188 (264)
                      |.++++........ +.       .+........++.  ..++.++.+|.+.++|.++|+.+.......           
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            99988876654432 11       1121111111222  256677888999999999999874332110           


Q ss_pred             -----------------------------CEEEEEEcCCCcEEEEe-C--------------------------------
Q 024676          189 -----------------------------PVTSAEVSRDGRYITTA-D--------------------------------  206 (264)
Q Consensus       189 -----------------------------~v~~~~~s~~~~~l~~~-~--------------------------------  206 (264)
                                                   ....++++|+..++... .                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                         01125677775543321 1                                


Q ss_pred             -------------CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          207 -------------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       207 -------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                                   ++.|.-||+.+++.+-.+..+.......+.. .+.+++.|+.|+.++.||.++|+++
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccc
Confidence                         2568999999998876666554333333433 3667888999999999999999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.27  E-value=1.1e-09  Score=93.33  Aligned_cols=206  Identities=15%  Similarity=0.073  Sum_probs=132.1

Q ss_pred             eeEeccCCCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeCC-------cCCEEEEEECCCCcEEEEecC--
Q 024676           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDANALFSASGSA--   81 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~H-------~~~V~~v~~~~~~~~l~s~s~--   81 (264)
                      .++++|   ||++|..+.          .++.|.++|..+++.++++.--       ...-..++|+||+++++.+..  
T Consensus       122 gia~Sp---Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~  198 (426)
T 3c75_H          122 HPVAAE---DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP  198 (426)
T ss_dssp             EEEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS
T ss_pred             ceEECC---CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC
Confidence            788885   998887776          4678999999999988776411       122346789999999877653  


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCeE--------EEEEECCCCCEEEEee--------------------------------
Q 024676           82 DFTAKLWDALTGDEKHSFEHKHIV--------RACAFSEDTHLLLTGG--------------------------------  121 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~l~s~~--------------------------------  121 (264)
                      +++|-+.|+.+++.+..+.....+        ..+.+++++++++...                                
T Consensus       199 ~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~  278 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR  278 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred             CCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence            679999999999877776543221        0123334444333322                                


Q ss_pred             -----CCCcEEEeeCCCCCCC--Ce-Eec--------cCCCCeEEEEEecCCCeEEEEeeC---------CCeEEEEECC
Q 024676          122 -----FEKILRIFDLNRPDAP--PR-EVG--------NSSGSIRTVAWLHSDQTILSSCTD---------SGGVRLWDAR  176 (264)
Q Consensus       122 -----~d~~i~~~d~~~~~~~--~~-~~~--------~~~~~i~~~~~~~~~~~~~~~~~~---------d~~v~iwd~~  176 (264)
                           ..+.+.+.|+......  .. ...        ........+++.+++..++++...         .+.|.+.|+.
T Consensus       279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence                 2233333333211100  00 000        000011124667776766665431         2579999999


Q ss_pred             CCceeEEecCCCCEEEEEEcCCCc-EEEEeC--CCcEEEEECCCceeeeEE-ecCCC
Q 024676          177 SGKIVQTLETKSPVTSAEVSRDGR-YITTAD--GSSVKFWDANHFGLVKGY-NMPCN  229 (264)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~~i~iwd~~~~~~~~~~-~~~~~  229 (264)
                      +++.+..+........+.++|||+ ++.+..  ++.|.++|+.+++.++++ .....
T Consensus       359 T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~  415 (426)
T 3c75_H          359 TGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRG  415 (426)
T ss_dssp             TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSS
T ss_pred             CCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCC
Confidence            999998887655688899999998 665443  689999999999999887 44433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.27  E-value=1.4e-12  Score=109.71  Aligned_cols=186  Identities=12%  Similarity=0.028  Sum_probs=99.1

Q ss_pred             CCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE
Q 024676           72 NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (264)
Q Consensus        72 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~  151 (264)
                      ++..+++++.|+.|..||..+|+.+..++. .++....+..+++++++++.|+.++.||..+++............+...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            467788899999999999999998888776 5554444556777888888999999999987765433211100000000


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcE-EEEeCCCcEEEEECCCceeeeEEecCCCC
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCNT  230 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~  230 (264)
                      -....++. +.+++.++.|..||.++|+.+..+.....   ...+|++.. ++++.++.|+.||.++++.+-.+..... 
T Consensus        87 p~~~~~~~-v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~-  161 (369)
T 2hz6_A           87 PCRSSDGI-LYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY-  161 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE-
T ss_pred             ceEecCCE-EEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc-
Confidence            00112333 44455668999999999998877655432   234566544 4556678999999998876554443211 


Q ss_pred             ceeeEcCC--CCCEEEEecCCCeEEEEEcCcceee
Q 024676          231 ESASLEPK--LGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       231 ~~~~~~~~--~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ....+..+  ....+++++.|+.++.||.++|+++
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             cCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            11111111  1145667888999999999999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.26  E-value=2e-09  Score=94.20  Aligned_cols=239  Identities=10%  Similarity=0.066  Sum_probs=164.9

Q ss_pred             eeEeccCCCCCeEEEEEeCCC-CcEEEeCCCCceEEeeeC-CcCCEEEEEE-C-CCCcEEEEec----------------
Q 024676           21 DLFYSPITPDGFFLVSASKDS-SPMLRNGETGDWIGTFEG-HKGAVWSCCL-D-ANALFSASGS----------------   80 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~-~v~i~~~~~~~~~~~~~~-H~~~V~~v~~-~-~~~~~l~s~s----------------   80 (264)
                      ++.+-.-.+||++|.....++ .|.+.|+.+.+..+.+.- -......+++ + |++.++..++                
T Consensus        91 ~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           91 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             ccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence            455544557898887776655 588899999998775542 1235778887 5 8898887663                


Q ss_pred             --CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCC----------------------------------
Q 024676           81 --ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK----------------------------------  124 (264)
Q Consensus        81 --~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~----------------------------------  124 (264)
                        .++.+-+.|..+.+....+........++.+|+++++++++.+.                                  
T Consensus       171 ~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             GGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             cccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence              34689999999988877776544456678999999999988653                                  


Q ss_pred             ----cEEEeeCCC--CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc------------eeEEecC
Q 024676          125 ----ILRIFDLNR--PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK------------IVQTLET  186 (264)
Q Consensus       125 ----~i~~~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~------------~~~~~~~  186 (264)
                          .+.+.|..+  +......+. ......++.++|++.++++++..+.+|.++|+++.+            .....+.
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             eEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence                366777765  322112221 223456678899999999998888999999999763            3444555


Q ss_pred             CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCC----------ceeeeEEecCCCCc------eeeEcCCCCCEEEEe---
Q 024676          187 KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH----------FGLVKGYNMPCNTE------SASLEPKLGNIFIAG---  246 (264)
Q Consensus       187 ~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~----------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g---  246 (264)
                      .....-++|+|+|...++. -++.|..||+.+          ...+.+...+.++.      .....+ +|++|++.   
T Consensus       330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~  408 (595)
T 1fwx_A          330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKF  408 (595)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESC
T ss_pred             CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCC
Confidence            5567889999999434444 378999999976          56677777765542      122345 57777764   


Q ss_pred             cCCCeE----------EEEEcCcce
Q 024676          247 GEDMWV----------HVFDFHTGE  261 (264)
Q Consensus       247 s~d~~v----------~vwd~~~g~  261 (264)
                      +.|+.+          .++|...++
T Consensus       409 skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          409 SKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CccccccCCCCCCCcceEEEcCCCc
Confidence            336542          778885444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=1.5e-09  Score=98.68  Aligned_cols=199  Identities=13%  Similarity=0.067  Sum_probs=123.4

Q ss_pred             CCcCCEEEEEECCCCcEEE-----EecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCc--------
Q 024676           59 GHKGAVWSCCLDANALFSA-----SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI--------  125 (264)
Q Consensus        59 ~H~~~V~~v~~~~~~~~l~-----s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~--------  125 (264)
                      +|...+..++|+||+++++     +|+.+.+|++||+.+++.+...........++|+ +++.|+.++.+..        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            4666788899999999887     3444468999999999865442111112467899 9999998887743        


Q ss_pred             -----EEEeeCCCCCCCCeEeccCC----CCeEEEEEecCCCeEEEEeeCC---CeEEEEECCCCc-eeEEe-cCCCCEE
Q 024676          126 -----LRIFDLNRPDAPPREVGNSS----GSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGK-IVQTL-ETKSPVT  191 (264)
Q Consensus       126 -----i~~~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~-~~~~~-~~~~~v~  191 (264)
                           |++|++.++......+....    .....+.+++++..++++...+   ..|.++|+.++. ....+ .......
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                 89999876543333333222    2356788999888877665532   589999998763 23333 2323333


Q ss_pred             EEEEcCCCc-EEEEeC-C---CcEEEEECCCcee--eeEEecCCCCceeeEcCCCCCEEE-EecCCC--eEEEEEcCcce
Q 024676          192 SAEVSRDGR-YITTAD-G---SSVKFWDANHFGL--VKGYNMPCNTESASLEPKLGNIFI-AGGEDM--WVHVFDFHTGE  261 (264)
Q Consensus       192 ~~~~s~~~~-~l~~~~-~---~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~gs~d~--~v~vwd~~~g~  261 (264)
                      .. ++++|. ++..++ +   ..|..+|+.+...  .+.+........ .+.+. ++.|+ +...|+  .|++||++.++
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~-g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSG-SGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEE-TTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEE-CCEEEEEEEECCeeEEEEEECCCCe
Confidence            33 555554 444443 2   4688899987643  233332222222 56664 55444 455554  68888887443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.21  E-value=5.4e-10  Score=93.56  Aligned_cols=209  Identities=13%  Similarity=-0.035  Sum_probs=130.8

Q ss_pred             eeEeccCCCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeCC-------cCCEEEEEECCCCcEEEEecC--
Q 024676           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDANALFSASGSA--   81 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~H-------~~~V~~v~~~~~~~~l~s~s~--   81 (264)
                      ++.++|   ||++|..+.          .++.|.++|..+++.++++...       ...-+.++++||+++++.+..  
T Consensus        69 ~i~~sp---Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~  145 (368)
T 1mda_H           69 LAVAGH---SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             EEEECT---TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             ceEECC---CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC
Confidence            688886   898888876          4788999999999999888532       123457899999998877653  


Q ss_pred             CCeEEE--EeCCCCcEEEEeecCCe-----E---EEEEE-------------------------------------CCCC
Q 024676           82 DFTAKL--WDALTGDEKHSFEHKHI-----V---RACAF-------------------------------------SEDT  114 (264)
Q Consensus        82 D~~v~i--wd~~~~~~~~~~~~~~~-----v---~~~~~-------------------------------------~~~~  114 (264)
                      +..+.+  +|..+   +..+.....     .   ..+..                                     .+++
T Consensus       146 ~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~  222 (368)
T 1mda_H          146 SAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             SCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccC
Confidence            467888  99866   222211100     0   00111                                     1222


Q ss_pred             CEEEEeeCCCcEEEeeCCCCCCCCeE-ec----------cCCCCeEEEEEecCCCeEEEEee---C-----CCeEEEEEC
Q 024676          115 HLLLTGGFEKILRIFDLNRPDAPPRE-VG----------NSSGSIRTVAWLHSDQTILSSCT---D-----SGGVRLWDA  175 (264)
Q Consensus       115 ~~l~s~~~d~~i~~~d~~~~~~~~~~-~~----------~~~~~i~~~~~~~~~~~~~~~~~---~-----d~~v~iwd~  175 (264)
                      ..++..+. +.+.+.|+.+....... ..          ........+++.+++..++++..   .     ++.+.++|+
T Consensus       223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~  301 (368)
T 1mda_H          223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence            22222233 45555555322110000 00          00001111567787777776544   2     235669999


Q ss_pred             CCCceeEEecCCCCEEEEEEcCCCc-EEE-Ee-CCCcEEEEECCCceeeeEEecCCCCceeeEc
Q 024676          176 RSGKIVQTLETKSPVTSAEVSRDGR-YIT-TA-DGSSVKFWDANHFGLVKGYNMPCNTESASLE  236 (264)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (264)
                      .+++.+..+........+.++|||+ +++ .. .++.|.++|+.+++.++++.....+..+.+.
T Consensus       302 ~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~  365 (368)
T 1mda_H          302 SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             SSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             CCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEee
Confidence            9999988776655788999999996 444 44 3789999999999999999877666555543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=2.3e-08  Score=79.66  Aligned_cols=200  Identities=12%  Similarity=0.030  Sum_probs=138.7

Q ss_pred             eEEeeeCCc--CCEEEEEECCCCcEEEEecC--CCeEEEEeCCCCcEEEEeecCC--eEEEEEECCCCCEEEEee-CCCc
Q 024676           53 WIGTFEGHK--GAVWSCCLDANALFSASGSA--DFTAKLWDALTGDEKHSFEHKH--IVRACAFSEDTHLLLTGG-FEKI  125 (264)
Q Consensus        53 ~~~~~~~H~--~~V~~v~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~-~d~~  125 (264)
                      .++++. |.  .....++|++++.+.++.+.  +++|++.|..+++.+..+....  ....+.+.  ++.|+.+. .++.
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~   87 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred             EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence            445553 43  34688999998765555543  6899999999999888875332  22344444  44555554 5789


Q ss_pred             EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC------CCEEEEEEcCCC
Q 024676          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDG  199 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~  199 (264)
                      +.++|..+.+........ ...-..  .+++++.++++. .+++|.++|.++.+.+..+...      ...+.+.+. +|
T Consensus        88 v~viD~~t~~v~~~i~~g-~~~g~g--lt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg  162 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQ-MKDGWG--LATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG  162 (266)
T ss_dssp             EEEEETTTTEEEEEEECC-SSSCCE--EEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEEEECCCCcEEEEEECC-CCCeEE--EEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC
Confidence            999999876544332222 122223  345677777765 4689999999999988776532      136778888 77


Q ss_pred             cEEEEeC-CCcEEEEECCCceeeeEEecC--------------CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          200 RYITTAD-GSSVKFWDANHFGLVKGYNMP--------------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       200 ~~l~~~~-~~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      ++++... ++.|.+.|..+++.+..+..+              ..+.-+++.+...++|+++.....+++-++.+.
T Consensus       163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            6666654 679999999999999998763              123467788876789999999999999887654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.19  E-value=8.5e-09  Score=86.45  Aligned_cols=222  Identities=13%  Similarity=0.068  Sum_probs=139.7

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEE----
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVR----  106 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~----  106 (264)
                      +..|+.++.++.+..+|..+|+.+-.+.............  +..++.++.++.+..+|..+++.+..+....++.    
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            3466778889999999999998664444322111111111  3356677889999999999999887776543332    


Q ss_pred             --EEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCC-CC--------eEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676          107 --ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-GS--------IRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus       107 --~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-~~--------i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                        ....  .+..++.++.++.+..+|..+++.......... +.        +...-.. .++.+++ ++.++.+..+|.
T Consensus       181 ~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~-~~~~g~l~~~d~  256 (376)
T 3q7m_A          181 ESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFA-LAYNGNLTALDL  256 (376)
T ss_dssp             CCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEE-ECTTSCEEEEET
T ss_pred             CCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEE-EecCcEEEEEEC
Confidence              1111  145677788899999999987765544332110 00        0000001 1344444 456689999999


Q ss_pred             CCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEec-CCCC-ceeeEcCCCCCEEEEecCCCeEE
Q 024676          176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PCNT-ESASLEPKLGNIFIAGGEDMWVH  253 (264)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~gs~d~~v~  253 (264)
                      ++++.+...... ....+... ++.++++..++.+..+|..+++.+-.+.. .... .....   .+..++.++.++.++
T Consensus       257 ~tG~~~w~~~~~-~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g~l~  331 (376)
T 3q7m_A          257 RSGQIMWKRELG-SVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEGYLH  331 (376)
T ss_dssp             TTCCEEEEECCC-CEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTSEEE
T ss_pred             CCCcEEeeccCC-CCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCCeEE
Confidence            999988766543 34444443 55666677788999999999887655542 2111 11222   245788888899999


Q ss_pred             EEEcCcceee
Q 024676          254 VFDFHTGEQI  263 (264)
Q Consensus       254 vwd~~~g~~i  263 (264)
                      ++|.++|+.+
T Consensus       332 ~~d~~tG~~~  341 (376)
T 3q7m_A          332 WINVEDGRFV  341 (376)
T ss_dssp             EEETTTCCEE
T ss_pred             EEECCCCcEE
Confidence            9999999865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.17  E-value=9.5e-09  Score=86.14  Aligned_cols=223  Identities=9%  Similarity=-0.017  Sum_probs=137.6

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCC---------cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeec
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGH---------KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH  101 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H---------~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  101 (264)
                      +..|..++.++.+..+|..+|+.+-.+...         ...+.+.- ..++..++.++.|+.+..+|..+++.+.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            456778888999999999999865444321         12332221 12344566677899999999999998777654


Q ss_pred             CCeEEE-EEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCC----eEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 024676          102 KHIVRA-CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS----IRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (264)
Q Consensus       102 ~~~v~~-~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~d~~v~iwd~~  176 (264)
                      ...+.. ...  .+..++.++.++.+..+|..+++............    .......  ++. +..+..++.|..+|.+
T Consensus       132 ~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~-v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          132 AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGA-AVVGGDNGRVSAVLME  206 (376)
T ss_dssp             SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTE-EEECCTTTEEEEEETT
T ss_pred             CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCE-EEEEcCCCEEEEEECC
Confidence            432211 111  14577788889999999998877554433211100    0111111  334 4445667899999999


Q ss_pred             CCceeEEecCCCCEE-----E---EEEcC---CCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE
Q 024676          177 SGKIVQTLETKSPVT-----S---AEVSR---DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (264)
Q Consensus       177 ~~~~~~~~~~~~~v~-----~---~~~s~---~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (264)
                      +++.+.......+..     .   +...|   ++.+++++.++.+..+|.++++.+-.+..... .....   .+..+..
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~---~~~~l~~  282 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSV-NDFIV---DGNRIYL  282 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCE-EEEEE---ETTEEEE
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCC-CCceE---ECCEEEE
Confidence            999887665322100     0   11111   45566666678999999999887655543221 11222   2556777


Q ss_pred             ecCCCeEEEEEcCcceee
Q 024676          246 GGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       246 gs~d~~v~vwd~~~g~~i  263 (264)
                      ++.++.++.+|.++|+++
T Consensus       283 ~~~~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          283 VDQNDRVMALTIDGGVTL  300 (376)
T ss_dssp             EETTCCEEEEETTTCCEE
T ss_pred             EcCCCeEEEEECCCCcEE
Confidence            778899999999999864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=2.4e-08  Score=82.84  Aligned_cols=227  Identities=12%  Similarity=0.071  Sum_probs=139.7

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeC--CCCcEEEeCCCCceEEee-------eCCcCCEEEEEECCCCcEEEEecC-----C
Q 024676           17 RPVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTF-------EGHKGAVWSCCLDANALFSASGSA-----D   82 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~--d~~v~i~~~~~~~~~~~~-------~~H~~~V~~v~~~~~~~~l~s~s~-----D   82 (264)
                      .....|+++|   +|+.+++...  ++.+++|.+.+++.. .|       .+|...+..+++++++.+.++-..     +
T Consensus        17 ~~p~~va~~~---~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTP---DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECT---TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECC---CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            5677888885   8988888642  343566655455533 22       246678999999999877665433     5


Q ss_pred             CeEEEEeCCCCcEEEEeecC-------CeEEEEEECCCCCEE-EEee---CCCcEEEeeCCCCCCCCeEecc--------
Q 024676           83 FTAKLWDALTGDEKHSFEHK-------HIVRACAFSEDTHLL-LTGG---FEKILRIFDLNRPDAPPREVGN--------  143 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l-~s~~---~d~~i~~~d~~~~~~~~~~~~~--------  143 (264)
                      ..|.+||..+++.+..+...       ..++.++++|++..+ ++-.   .++.|.+||+.+++.. .....        
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-r~~~~~~~~~~~~  171 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-RVLQGYPGIAPED  171 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-EECTTCTTTSCCS
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-EEecCCCcccccc
Confidence            78999999988866665421       346788999865444 4444   5788999998754321 11100        


Q ss_pred             ---------------------CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC---CCc--------eeEEecCCCCEE
Q 024676          144 ---------------------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR---SGK--------IVQTLETKSPVT  191 (264)
Q Consensus       144 ---------------------~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~---~~~--------~~~~~~~~~~v~  191 (264)
                                           .......+++++++..++++....+.+..+|..   .+.        .+..........
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                                 012357788888777666665554455555432   111        011111122455


Q ss_pred             EEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCCEEEEecCC
Q 024676          192 SAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGED  249 (264)
Q Consensus       192 ~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d  249 (264)
                      .++++++|.++++. .++.|..||..+++.......+  ..+..+++.++ +.++++.+..
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~  311 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD-GYLYFDCNQL  311 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT-SCEEEEECCG
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC-CcEEEEeCcc
Confidence            68899999887765 4679999998555432222222  23456667664 7777777644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=9.5e-07  Score=70.36  Aligned_cols=206  Identities=9%  Similarity=-0.051  Sum_probs=131.8

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcEE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      .+.+++|+|  .++...++-...+.|.+++...+.....+.........+++++++ ...++-...+.|.+++.......
T Consensus        37 ~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           37 VIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            356788886  234555566667788889887654333333222456889999865 45566667789999998654432


Q ss_pred             EEeecC-CeEEEEEECCCCCEEEEeeC---CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676           97 HSFEHK-HIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus        97 ~~~~~~-~~v~~~~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      ...... .....++++|++..|+.+..   .+.|..++++... ..............+++.++++.++++....+.|..
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            222222 35688999997666665544   3678888875432 111211222356778888877888888777789999


Q ss_pred             EECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecC
Q 024676          173 WDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP  227 (264)
Q Consensus       173 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~  227 (264)
                      +|+.+...............++.. ++.++++. .++.|..+|..+++.+..+...
T Consensus       194 ~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g  248 (267)
T 1npe_A          194 LNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH  248 (267)
T ss_dssp             EETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred             EecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence            999865443333333344566665 34444444 4578999999999888887653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=5.4e-08  Score=82.55  Aligned_cols=216  Identities=13%  Similarity=0.120  Sum_probs=140.1

Q ss_pred             CCCeEE-EEEeCCCCcEEEeCCCC----ceEEeee--------CCcCCEEEEEECCCCcEEEEecCC------CeEEEEe
Q 024676           29 PDGFFL-VSASKDSSPMLRNGETG----DWIGTFE--------GHKGAVWSCCLDANALFSASGSAD------FTAKLWD   89 (264)
Q Consensus        29 ~~g~~l-~t~s~d~~v~i~~~~~~----~~~~~~~--------~H~~~V~~v~~~~~~~~l~s~s~D------~~v~iwd   89 (264)
                      .++++| +++..+..|.++|..+.    +..++++        +- ..-+.+...|++ .++++..+      +.+-+.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            466655 55667788999998765    5566663        11 123556778999 66665555      7899999


Q ss_pred             CCCCcEEEEeecC-C---eEEEEEECCCCCEEEEee-------------------CCCcEEEeeCCCCCCCCeEecc-CC
Q 024676           90 ALTGDEKHSFEHK-H---IVRACAFSEDTHLLLTGG-------------------FEKILRIFDLNRPDAPPREVGN-SS  145 (264)
Q Consensus        90 ~~~~~~~~~~~~~-~---~v~~~~~~~~~~~l~s~~-------------------~d~~i~~~d~~~~~~~~~~~~~-~~  145 (264)
                      ..+++.+..++.. .   .-..+.|+|+++.+++..                   .+..|.+||+.+++........ ..
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999998888632 1   234578899999998875                   3689999999875433222221 11


Q ss_pred             CCeEEEEE--ecCCCeEEEEee-----CCCeEEEEECCCCce--eEEe--cC-----------------CCCEEEEEEcC
Q 024676          146 GSIRTVAW--LHSDQTILSSCT-----DSGGVRLWDARSGKI--VQTL--ET-----------------KSPVTSAEVSR  197 (264)
Q Consensus       146 ~~i~~~~~--~~~~~~~~~~~~-----~d~~v~iwd~~~~~~--~~~~--~~-----------------~~~v~~~~~s~  197 (264)
                      .....+.+  .|++...++++-     .+++|.+|....++.  ++.+  ..                 ......+.+||
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            23345555  677777777776     667888776654431  1111  11                 13467789999


Q ss_pred             CCcEEEEeC--CCcEEEEECC---CceeeeEEecCC---------------CCceeeEcCCCCCEEEEec
Q 024676          198 DGRYITTAD--GSSVKFWDAN---HFGLVKGYNMPC---------------NTESASLEPKLGNIFIAGG  247 (264)
Q Consensus       198 ~~~~l~~~~--~~~i~iwd~~---~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~gs  247 (264)
                      ||++|-.+.  .+.|.+||+.   +.+.+.......               .+..+.++++ |++|+++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD-Gk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD-GRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT-SSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC-CCEEEEEc
Confidence            999875543  4799999985   345565555431               3566777775 66666555

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.11  E-value=1.3e-07  Score=76.65  Aligned_cols=196  Identities=10%  Similarity=0.053  Sum_probs=122.8

Q ss_pred             EEEEEECCC-CcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676           64 VWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        64 V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (264)
                      -.+..|+++ +.++++...++.|..||..++.. ..+.....+..++++++++++++ . ++.|.+||.++++.......
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEec
Confidence            456778885 55667888889999999988764 44556678999999999996554 3 56789999876543211111


Q ss_pred             c---CCCCeEEEEEecCCCeEEEEeeC--------CCeEEEEECCC-CceeEEecCCCCEEEEEEcCCCcEE-EEe-CCC
Q 024676          143 N---SSGSIRTVAWLHSDQTILSSCTD--------SGGVRLWDARS-GKIVQTLETKSPVTSAEVSRDGRYI-TTA-DGS  208 (264)
Q Consensus       143 ~---~~~~i~~~~~~~~~~~~~~~~~~--------d~~v~iwd~~~-~~~~~~~~~~~~v~~~~~s~~~~~l-~~~-~~~  208 (264)
                      .   ....++.+++.+++..++.+...        ...-.||.+.. ++...........+.++++|+++.+ ++. .++
T Consensus        92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~  171 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSY  171 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred             CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence            1   11235677777766644433221        12345554432 3433323333457889999999755 333 357


Q ss_pred             cEEEEEC--CCceee--eEE-ecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          209 SVKFWDA--NHFGLV--KGY-NMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       209 ~i~iwd~--~~~~~~--~~~-~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .|..||+  .++...  +.+ ...   ..+..+.+.++ |.+.++...++.|.+||.++|+.+
T Consensus       172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~-G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE-GKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT-SCEEEEEETTTEEEEECTTTCCEE
T ss_pred             cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC-CCEEEEEcCCCEEEEEcCCCceEE
Confidence            8999987  344321  112 111   23345566664 788888777889999999888754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=1.1e-06  Score=69.99  Aligned_cols=228  Identities=5%  Similarity=-0.086  Sum_probs=137.6

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceE-----EeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcEEEEeecC-Ce
Q 024676           32 FFLVSASKDSSPMLRNGETGDWI-----GTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEHK-HI  104 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~-----~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~  104 (264)
                      .+|+.+.. +.|+.++.......     ..+.........+++++++ ...++-..++.|..++...+......... ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34444443 35666766544321     1122122346789999865 45566677889999998766543333222 45


Q ss_pred             EEEEEECCCCCEEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC--CCeEEEEECCCCcee
Q 024676          105 VRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGKIV  181 (264)
Q Consensus       105 v~~~~~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~  181 (264)
                      ...++++|++..++.+ ...+.|.+++++.... .............+++.+.++.++++...  .+.|..+++......
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence            7889999976555554 4567899999864321 12221112356778888867777666543  468888887643322


Q ss_pred             EEe-cCCCCEEEEEEcCCCcEE-EEe-CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          182 QTL-ETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       182 ~~~-~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ... ......+.++++|++..| .+. ..+.|..+|...............+..++.  ..+.++++...++.|..+|..
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCC
Confidence            111 222457889999976543 443 357899999876543333332223333333  346777777778899999998


Q ss_pred             cceee
Q 024676          259 TGEQI  263 (264)
Q Consensus       259 ~g~~i  263 (264)
                      +|+.+
T Consensus       238 ~g~~~  242 (267)
T 1npe_A          238 ISKEM  242 (267)
T ss_dssp             TTEEE
T ss_pred             CCCce
Confidence            88754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.07  E-value=6.1e-08  Score=80.41  Aligned_cols=198  Identities=11%  Similarity=0.021  Sum_probs=124.8

Q ss_pred             CCEEEEEECCCCcEEEEec--CCCeEEEEeCCCCcEEEEee--------cCCeEEEEEECCCCCEEEEeeC-----CCcE
Q 024676           62 GAVWSCCLDANALFSASGS--ADFTAKLWDALTGDEKHSFE--------HKHIVRACAFSEDTHLLLTGGF-----EKIL  126 (264)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~-----d~~i  126 (264)
                      .....++++++++.+++..  .++.++||.+.++. +..+.        +-..+..++++++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5788999999999888853  23436667665443 33221        2346899999999876665433     5789


Q ss_pred             EEeeCCCCCCCCeEecc-----CCCCeEEEEEecCCCeEEEEee---CCCeEEEEECCCCceeEEecCC-----------
Q 024676          127 RIFDLNRPDAPPREVGN-----SSGSIRTVAWLHSDQTILSSCT---DSGGVRLWDARSGKIVQTLETK-----------  187 (264)
Q Consensus       127 ~~~d~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~---~d~~v~iwd~~~~~~~~~~~~~-----------  187 (264)
                      .+||+.+++........     .......+++.++++.++++..   .++.|.+||+.+++....+..+           
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99998866532221111     1223567787766667767665   5689999999988765544220           


Q ss_pred             -------------------CCEEEEEEcCCCcEEEEe-C-CCcEEEEECC---Cc-----ee---eeEEecCCCCceeeE
Q 024676          188 -------------------SPVTSAEVSRDGRYITTA-D-GSSVKFWDAN---HF-----GL---VKGYNMPCNTESASL  235 (264)
Q Consensus       188 -------------------~~v~~~~~s~~~~~l~~~-~-~~~i~iwd~~---~~-----~~---~~~~~~~~~~~~~~~  235 (264)
                                         ..++.++++|+|+.|..+ . +..+..++..   ..     +.   +........+..+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                               125889999999765443 3 3344444431   10     00   111111223445667


Q ss_pred             cCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          236 EPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       236 ~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .++ |.++++...++.|.+||..+|+
T Consensus       256 d~~-G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          256 DKD-HNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             CTT-CCEEEEEGGGTEEEEEETTTTE
T ss_pred             CCC-CCEEEEccCCCeEEEEECCCCC
Confidence            764 8999999999999999985565

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.05  E-value=1.2e-07  Score=75.53  Aligned_cols=192  Identities=10%  Similarity=0.028  Sum_probs=128.4

Q ss_pred             CeeeeEeccCCCCCeEEEEEeC--CCCcEEEeCCCCceEEeeeC-CcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc
Q 024676           18 PVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~--d~~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~   94 (264)
                      ...+|+|+|   ++.+.++.+.  ++.+++.|..+++.++.+.- .......+++..+ ...++.-.++.+-++|..+.+
T Consensus        22 f~~Gl~~~~---dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~-~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           22 FTQGLVYAE---NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE-KLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             CEEEEEECS---TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT-EEEEEETTCSEEEEEETTTTE
T ss_pred             CcccEEEeC---CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC-EEEEEEecCCEEEEEECCCCc
Confidence            357899985   6665555543  57899999999998887642 1122234566533 344556788999999999998


Q ss_pred             EEEEeecC-CeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-ccC---CCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           95 EKHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNS---SGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        95 ~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~---~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      .+.+++.. ..  ...+.++++.++.+..++.+.++|..+.+...... +..   ....+.+.+.  ++.+.+....++.
T Consensus        98 v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~  173 (266)
T 2iwa_A           98 NIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSE
T ss_pred             EEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCe
Confidence            88888644 22  22345567777776678899999987655432222 111   1135667766  3466666666789


Q ss_pred             EEEEECCCCceeEEecCC--------------CCEEEEEEcCCCcE-EEEeC-CCcEEEEECCC
Q 024676          170 VRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGRY-ITTAD-GSSVKFWDANH  217 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~-l~~~~-~~~i~iwd~~~  217 (264)
                      |.+.|.++++++..+...              ...+.++++|+++. ++++. ...+...++..
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            999999999998877542              24689999999854 45543 45666666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.05  E-value=7.1e-08  Score=76.15  Aligned_cols=194  Identities=14%  Similarity=0.147  Sum_probs=128.6

Q ss_pred             eEEeeeCC--cCCEEEEEECCCCcEEEEecCCC--eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEee-CCCcEE
Q 024676           53 WIGTFEGH--KGAVWSCCLDANALFSASGSADF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILR  127 (264)
Q Consensus        53 ~~~~~~~H--~~~V~~v~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~  127 (264)
                      .++++ .|  +.....+.|+ ++.+..+.+.++  .|+.+|..+++.+...............+.++.|+... .++.+.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            34555 34  3445888898 666667777766  99999999999888876544433322233344555554 578999


Q ss_pred             EeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC------CCEEEEEEcCCCcE
Q 024676          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDGRY  201 (264)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~~~  201 (264)
                      +||..+.+...+......+  +.+  +++++.++++.. .++|.++|.++.+.+..+...      ..++.+.+. +|++
T Consensus       111 v~D~~t~~~~~ti~~~~eG--~gl--t~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGEG--WGL--THNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             EEETTTCCEEEEEECSSCC--CCE--EECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEECccCcEEEEEECCCCc--eEE--ecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence            9999876654333322222  233  345666666644 578999999999988776431      235667776 7777


Q ss_pred             EEEeC-CCcEEEEECCCceeeeEEecCC-------------CCceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          202 ITTAD-GSSVKFWDANHFGLVKGYNMPC-------------NTESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       202 l~~~~-~~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      .+... ++.|.+.|.++++.+..+....             .++-+++.+..+++|++|=  .+=++|.
T Consensus       185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK--~Wp~~~e  251 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK--LWPKVFE  251 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET--TCSEEEE
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC--CCCceEE
Confidence            66664 6799999999999999888641             1245778887677777773  3334443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.04  E-value=3.4e-08  Score=89.59  Aligned_cols=190  Identities=11%  Similarity=0.057  Sum_probs=123.4

Q ss_pred             CCCcEEEeCCCCceEEeeeC--Cc----------------------------CCE-EEEEECCCCcEEEEecCCCe----
Q 024676           40 DSSPMLRNGETGDWIGTFEG--HK----------------------------GAV-WSCCLDANALFSASGSADFT----   84 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~--H~----------------------------~~V-~~v~~~~~~~~l~s~s~D~~----   84 (264)
                      ++.+..+|..+|+.+=.+..  +.                            +.+ ..++++++..+++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            78899999999986544431  00                            011 24678888888888877764    


Q ss_pred             ---------------EEEEeCCCCcEEEEeecC----------CeEEEEEECCCCC---EEEEeeCCCcEEEeeCCCCCC
Q 024676           85 ---------------AKLWDALTGDEKHSFEHK----------HIVRACAFSEDTH---LLLTGGFEKILRIFDLNRPDA  136 (264)
Q Consensus        85 ---------------v~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~s~~~d~~i~~~d~~~~~~  136 (264)
                                     |..||..+|+.+..++..          .+........+++   .++.++.++.++++|.++++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           999999999988877521          1222222223454   788899999999999988875


Q ss_pred             CCeEeccC-------------------------------------CC-CeEEEEEecCCCeEEEEeeC------------
Q 024676          137 PPREVGNS-------------------------------------SG-SIRTVAWLHSDQTILSSCTD------------  166 (264)
Q Consensus       137 ~~~~~~~~-------------------------------------~~-~i~~~~~~~~~~~~~~~~~~------------  166 (264)
                      ........                                     .+ ....+++.|..+.+++...+            
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            42111000                                     00 01124566655554443211            


Q ss_pred             --------------------------------CCeEEEEECCCCceeEEecCCCCEEEEEEcC-CCcEEEEeCCCcEEEE
Q 024676          167 --------------------------------SGGVRLWDARSGKIVQTLETKSPVTSAEVSR-DGRYITTADGSSVKFW  213 (264)
Q Consensus       167 --------------------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~i~iw  213 (264)
                                                      ++.|..||++|++.+.......++..-.++. ++..+.++.|+.++.|
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~  501 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAY  501 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEE
Confidence                                            3789999999999988876655544333443 4455556668999999


Q ss_pred             ECCCceeeeEEecCCC
Q 024676          214 DANHFGLVKGYNMPCN  229 (264)
Q Consensus       214 d~~~~~~~~~~~~~~~  229 (264)
                      |.++++.+-.++.+..
T Consensus       502 D~~tG~~lw~~~~~~~  517 (689)
T 1yiq_A          502 AADTGEKLWEQPAASG  517 (689)
T ss_dssp             ETTTCCEEEEEECSSC
T ss_pred             ECCCCccceeeeCCCC
Confidence            9999999988887543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.04  E-value=9.1e-08  Score=84.90  Aligned_cols=230  Identities=13%  Similarity=0.065  Sum_probs=139.6

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeee--CCcC--CEEE-EEECCCCcEEEEecC-----CCeEEEEeCCCCcEEEEee
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWS-CCLDANALFSASGSA-----DFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~--~V~~-v~~~~~~~~l~s~s~-----D~~v~iwd~~~~~~~~~~~  100 (264)
                      +..|+.++.|+.+..+|..+|+.+-.+.  .+..  .+.+ -.+ .++..++..+.     ++.|..+|..+++.+..+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            4467788889999999999998654332  2211  1111 001 14544443332     7999999999999887765


Q ss_pred             cCCeE---------------------------------------EEEEECCCCCEEEEeeCC----------------Cc
Q 024676          101 HKHIV---------------------------------------RACAFSEDTHLLLTGGFE----------------KI  125 (264)
Q Consensus       101 ~~~~v---------------------------------------~~~~~~~~~~~l~s~~~d----------------~~  125 (264)
                      ...+.                                       ....+++...+++.++.+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32211                                       124566766677665532                25


Q ss_pred             EEEeeCCCCCCCCeEeccC---------CCCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCceeEEecCCC------
Q 024676          126 LRIFDLNRPDAPPREVGNS---------SGSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS------  188 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------  188 (264)
                      +..+|.++++........+         ..++. +....++.  .+++.+..+|.+.++|.++|+.+.......      
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            8888988887665543221         11221 11112332  355666778999999999999887654221      


Q ss_pred             --------CE--------------------------EEEEEcCCCcEE-EEe----------------------------
Q 024676          189 --------PV--------------------------TSAEVSRDGRYI-TTA----------------------------  205 (264)
Q Consensus       189 --------~v--------------------------~~~~~s~~~~~l-~~~----------------------------  205 (264)
                              ++                          ..++++|+..++ +..                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                    11                          234567765433 322                            


Q ss_pred             ---------CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          206 ---------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       206 ---------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                               ..+.+..||..+++.+-.+..........+.. .+..+..++.|+.++.||.++|+++
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEE
Confidence                     23578899999988776665543322222222 2455666899999999999999975

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.01  E-value=8.6e-08  Score=78.07  Aligned_cols=186  Identities=10%  Similarity=0.045  Sum_probs=116.3

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee---eCC-cCCEEEEEECCCCcEEEE----ecC---
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGH-KGAVWSCCLDANALFSAS----GSA---   81 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~---~~H-~~~V~~v~~~~~~~~l~s----~s~---   81 (264)
                      ..+...+.+++++|   +|+++++...++.|.+|+.. ++.....   .+. ...+..+++++++.+.+|    |..   
T Consensus        82 ~~~~~~~~gl~~d~---dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           82 LDATAFTNGNAVDA---QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             EESCSCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred             eCCCCccceeeECC---CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence            34556678899885   88877766666788889876 6532211   121 234667999999998886    432   


Q ss_pred             ----------CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC------CcEEEeeCCCCCCCCe-Ee-cc
Q 024676           82 ----------DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPR-EV-GN  143 (264)
Q Consensus        82 ----------D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~~-~~-~~  143 (264)
                                .+.|..+|..+++..... .....+.++|+|+++.|+.+...      +.|..|++........ .. ..
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~  236 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV  236 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred             cccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence                      245777777666543333 33456789999999988776654      6899999764321101 11 11


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EEeCC
Q 024676          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADG  207 (264)
Q Consensus       144 ~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~  207 (264)
                      ..+....+++.+++. +.++. . +.|.+||. .++.+..+.....+.+++|+|+++.| +++.+
T Consensus       237 ~~~~pdgi~~d~~G~-lwv~~-~-~gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          237 PDGLPDGFCVDRGGW-LWSSS-G-TGVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             SSSCCCSEEECTTSC-EEECC-S-SEEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             CCCCCCeEEECCCCC-EEEec-C-CcEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence            122333455555544 44443 4 46999998 46666666554467889999988654 44443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.00  E-value=2.1e-07  Score=73.51  Aligned_cols=187  Identities=11%  Similarity=0.040  Sum_probs=127.2

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      ...+|.|+    ++.+.++.+.++.++++|..+++.++.+-...-.-..+++..+..+++ .-.++.+.++|..+.+.+.
T Consensus        56 ftqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~l-tw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           56 FTQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQL-TWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CEEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEE-ESSSCEEEEEETTTTEEEE
T ss_pred             ccceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEE-EccCCEEEEEECCcCcEEE
Confidence            34678887    467778888999999999999998776621111223466665554544 5678999999999999998


Q ss_pred             EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cC---CCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676           98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NS---SGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~---~~~i~~~~~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      +++....-..++  ++++.|+.+..++.|.++|..+.+....... ..   -..++.+.|.  ++.+.+.....+.|.+.
T Consensus       131 ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          131 TTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred             EEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEE
Confidence            887554334444  4577777776789999999877654322211 11   1234666766  34577776667899999


Q ss_pred             ECCCCceeEEecCC--------------CCEEEEEEcCCC-cEEEEeCCCcEEEEE
Q 024676          174 DARSGKIVQTLETK--------------SPVTSAEVSRDG-RYITTADGSSVKFWD  214 (264)
Q Consensus       174 d~~~~~~~~~~~~~--------------~~v~~~~~s~~~-~~l~~~~~~~i~iwd  214 (264)
                      |.++++++..+...              .-.+.|+++|++ ++++++- ..=++|.
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK-~Wp~~~e  261 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK-LWPRLFE  261 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET-TCSEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC-CCCceEE
Confidence            99999998777432              246899999976 5566653 3334443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.00  E-value=1.6e-07  Score=74.17  Aligned_cols=187  Identities=13%  Similarity=0.157  Sum_probs=124.4

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCC--CcEEEeCCCCceEEeeeCCcCC-EEEEEECCCCcEEEEecCCCeEEEEeCCCCcE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~--~v~i~~~~~~~~~~~~~~H~~~-V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      ..+|.|+    ++.+..+++.++  .++++|..+++.++.+...... -..+++..+..+ +..-.++.+.++|..+.+.
T Consensus        45 tqGL~~~----~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly-~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           45 TEGFFYR----NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIV-GLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             EEEEEEE----TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEE-EEESSSSEEEEEETTTCCE
T ss_pred             cceEEEE----CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEE-EEEeeCCEEEEEECccCcE
Confidence            4678887    567777777766  8999999999988877543222 233555444333 4456788999999999999


Q ss_pred             EEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-c---CCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-N---SSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~---~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      +.+++....-..++  ++++.|+.+..++.|.++|..+.+....... .   .-..++.+.|.  ++.+.+....++.|.
T Consensus       120 ~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~  195 (262)
T 3nol_A          120 VRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIV  195 (262)
T ss_dssp             EEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEE
T ss_pred             EEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEE
Confidence            98887644323443  4566666665578899999876554322211 1   11234556665  446777766778999


Q ss_pred             EEECCCCceeEEecCC-------------CCEEEEEEcCCCcE-EEEeCCCcEEEEEC
Q 024676          172 LWDARSGKIVQTLETK-------------SPVTSAEVSRDGRY-ITTADGSSVKFWDA  215 (264)
Q Consensus       172 iwd~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~-l~~~~~~~i~iwd~  215 (264)
                      +.|.++++++..+...             ...+.++++|+++. ++++ ...=++|.+
T Consensus       196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG-K~Wp~~~ev  252 (262)
T 3nol_A          196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG-KLWPKVFEI  252 (262)
T ss_dssp             EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE-TTCSEEEEE
T ss_pred             EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC-CCCCceEEE
Confidence            9999999998877542             24689999998754 4555 344445443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.99  E-value=5.6e-07  Score=74.04  Aligned_cols=180  Identities=14%  Similarity=0.081  Sum_probs=112.9

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee---CC-cCCEEEEEECCCCcEEEEecCC----CeEEE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GH-KGAVWSCCLDANALFSASGSAD----FTAKL   87 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~---~H-~~~V~~v~~~~~~~~l~s~s~D----~~v~i   87 (264)
                      ...+.+++|.|   +|+++++. .+ .+.+|+..+++......   ++ ...+..+++++++.+.++...+    ....|
T Consensus        89 ~~~v~~i~~~~---dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           89 PFMGSALAKIS---DSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             SSCEEEEEEEE---TTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CCcceEEEEeC---CCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence            45688899886   88877654 44 48889988887543221   11 2468899999999877654322    23444


Q ss_pred             EeCCCCcEEEEeecCCeEEEEEECCCCCEEEEe-eCCCcEEEeeCC--CC-CCCC-eEe---ccCCCCeEEEEEecCCCe
Q 024676           88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDLN--RP-DAPP-REV---GNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        88 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~~~d~~--~~-~~~~-~~~---~~~~~~i~~~~~~~~~~~  159 (264)
                      |.+.++............+.++|+|+++.++.+ +.++.|.+|+++  ++ .... ...   ....+....+++.+++ .
T Consensus       164 ~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~  242 (326)
T 2ghs_A          164 YHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-H  242 (326)
T ss_dssp             EEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-C
T ss_pred             EEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-C
Confidence            444344433333333456789999999876554 457889999985  44 3211 111   1123345666666555 4


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEc-CCCcEE
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVS-RDGRYI  202 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s-~~~~~l  202 (264)
                      +.++...++.|..||. +++.+..+... ..+.+++|+ |++..|
T Consensus       243 lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          243 IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRL  286 (326)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEE
Confidence            5555555589999998 56666666543 358899998 887543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.98  E-value=3.4e-07  Score=71.62  Aligned_cols=186  Identities=12%  Similarity=0.055  Sum_probs=123.7

Q ss_pred             EEeeeCC--cCCEEEEEECCCCcEEEEecCC--CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEe-eCCCcEEE
Q 024676           54 IGTFEGH--KGAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKILRI  128 (264)
Q Consensus        54 ~~~~~~H--~~~V~~v~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~~  128 (264)
                      ++++ .|  .+.+..+.|+. +.+..|.+.+  ..|+.+|+.+++.+...............+.++.|+.. -.++.+.+
T Consensus        12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence            4455 35  34577899987 4455565554  49999999999988887654433322222234445544 45799999


Q ss_pred             eeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC------CCEEEEEEcCCCcEE
Q 024676          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDGRYI  202 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~~~l  202 (264)
                      ||..+.+...+.....  .-+.++  ++++.++++-. +++|.++|.++.+.+..++..      ..++.+.+. +|+++
T Consensus        90 ~D~~tl~~~~ti~~~~--~Gwglt--~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly  163 (243)
T 3mbr_X           90 YDLATLTPRARFRYPG--EGWALT--SDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL  163 (243)
T ss_dssp             EETTTTEEEEEEECSS--CCCEEE--ECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EECCcCcEEEEEeCCC--CceEEe--eCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence            9998765443333222  223443  45667777654 589999999999988777532      345667766 67766


Q ss_pred             EEe-CCCcEEEEECCCceeeeEEecCC--------------CCceeeEcCCCCCEEEEec
Q 024676          203 TTA-DGSSVKFWDANHFGLVKGYNMPC--------------NTESASLEPKLGNIFIAGG  247 (264)
Q Consensus       203 ~~~-~~~~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~gs  247 (264)
                      +.. .+..|.+.|.++++.+..+....              -.+-+++.+..+++|+||=
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            665 46789999999999998887531              1234677887778888874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.98  E-value=1.4e-07  Score=85.37  Aligned_cols=189  Identities=13%  Similarity=0.088  Sum_probs=125.5

Q ss_pred             CCCcEEEeCCCCceEEeeeCCcC--------------------------------CEEEEEECCCCcEEEEecCCC----
Q 024676           40 DSSPMLRNGETGDWIGTFEGHKG--------------------------------AVWSCCLDANALFSASGSADF----   83 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~H~~--------------------------------~V~~v~~~~~~~~l~s~s~D~----   83 (264)
                      ++.++.+|..+|+.+-.+.....                                ....+++++++..++.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            68899999999987655432111                                012467788887777766554    


Q ss_pred             ---------------eEEEEeCCCCcEEEEeecC----------CeEEEEEECCCC---CEEEEeeCCCcEEEeeCCCCC
Q 024676           84 ---------------TAKLWDALTGDEKHSFEHK----------HIVRACAFSEDT---HLLLTGGFEKILRIFDLNRPD  135 (264)
Q Consensus        84 ---------------~v~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~---~~l~s~~~d~~i~~~d~~~~~  135 (264)
                                     +|..+|..+++.+..++..          .....+....++   +.++.++.++.+.++|.++++
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           5999999999988877521          111222333356   678889999999999998887


Q ss_pred             CCCeEeccC---------CCC-e------------------------EEEEEecCCCeEEEEee----------------
Q 024676          136 APPREVGNS---------SGS-I------------------------RTVAWLHSDQTILSSCT----------------  165 (264)
Q Consensus       136 ~~~~~~~~~---------~~~-i------------------------~~~~~~~~~~~~~~~~~----------------  165 (264)
                      .........         .+. +                        ..+++.|+.+.+++...                
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            543322110         000 0                        13456666665554322                


Q ss_pred             --------------------------CCCeEEEEECCCCceeEEecCCCCEEEEEEcCCC-cEEEEeCCCcEEEEECCCc
Q 024676          166 --------------------------DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDANHF  218 (264)
Q Consensus       166 --------------------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iwd~~~~  218 (264)
                                                ..+.|..||+++++.+..+....++....++..+ .+++++.++.++.||.+++
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG  508 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence                                      1278999999999998887665554444455444 4455566899999999999


Q ss_pred             eeeeEEecCC
Q 024676          219 GLVKGYNMPC  228 (264)
Q Consensus       219 ~~~~~~~~~~  228 (264)
                      +.+..+..+.
T Consensus       509 ~~lw~~~~~~  518 (677)
T 1kb0_A          509 EKLWEAPTGT  518 (677)
T ss_dssp             CEEEEEECSS
T ss_pred             ceeeeeeCCC
Confidence            9999998764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.96  E-value=1.4e-07  Score=74.45  Aligned_cols=185  Identities=14%  Similarity=0.077  Sum_probs=125.4

Q ss_pred             eEEeeeCC--cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeE--EEEEECCCCCEEEEeeCCCcEEE
Q 024676           53 WIGTFEGH--KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKILRI  128 (264)
Q Consensus        53 ~~~~~~~H--~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~~i~~  128 (264)
                      .++++ .|  +.....+.|+. +.+..+.+.++.|+.+|..+++.+... .....  ..+.... +++..+.-.++.+.+
T Consensus        45 Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEE
T ss_pred             EEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEE
Confidence            34555 24  34567888874 556678888889999999999877766 33333  3344432 344444456899999


Q ss_pred             eeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC------CCEEEEEEcCCCcEE
Q 024676          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDGRYI  202 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~v~~~~~s~~~~~l  202 (264)
                      ||..+.+...+....  +.-+.++  ++++.++++.. +++|.++|.++.+.+..+...      ..++.+.+. +|++.
T Consensus       121 ~D~~Tl~~~~ti~~~--~eGwGLt--~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          121 WSGMPPQRERTTRYS--GEGWGLC--YWNGKLVRSDG-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             EETTTTEEEEEEECS--SCCCCEE--EETTEEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EECCcCcEEEEEeCC--CceeEEe--cCCCEEEEECC-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            999876654333322  2223343  45666666654 689999999999988776531      245677777 77776


Q ss_pred             EEeC-CCcEEEEECCCceeeeEEecC--------------CCCceeeEcCCCCCEEEEec
Q 024676          203 TTAD-GSSVKFWDANHFGLVKGYNMP--------------CNTESASLEPKLGNIFIAGG  247 (264)
Q Consensus       203 ~~~~-~~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~gs  247 (264)
                      +... ++.|.+.|.++++.+..+...              ...+-+++.+..+++|+||=
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            6664 679999999999999888763              12245788887788888884

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.95  E-value=3.8e-06  Score=68.75  Aligned_cols=235  Identities=10%  Similarity=0.055  Sum_probs=142.9

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC--------------------CcCCEEEEEECC-C
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--------------------HKGAVWSCCLDA-N   72 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~--------------------H~~~V~~v~~~~-~   72 (264)
                      |......++++.|   +|+++.++..++.|..|+..+++.. .+..                    .......+++.+ +
T Consensus        16 g~~~~p~~i~~d~---~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           16 APSYAPNSFTFDS---TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             CSSSCCCCEECCT---TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CccCCceEEEEcC---CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            3333345677875   7887788888899999988766543 2210                    113578899997 6


Q ss_pred             CcEEEEecCCCeEEEEeCCCCcEEEEee-----cCCeEEEEEECC-CCCEEEEeeC-----------------CCcEEEe
Q 024676           73 ALFSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSE-DTHLLLTGGF-----------------EKILRIF  129 (264)
Q Consensus        73 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~s~~~-----------------d~~i~~~  129 (264)
                      +.+.++.. .+.+..+|..++.......     .....+.+++++ ++++.++-..                 ++.+..+
T Consensus        92 g~l~v~d~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           92 NQLYIVDC-YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             TEEEEEET-TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             CcEEEEEC-CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            66555433 3447888876553221111     113467899999 8987776432                 2567777


Q ss_pred             eCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc--eeEEe-cCCCCEEEEEEcCCCcEEEEeC
Q 024676          130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTL-ETKSPVTSAEVSRDGRYITTAD  206 (264)
Q Consensus       130 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~  206 (264)
                      |..+++... .... ......+++.+++..++++....+.|..||+.+..  ....+ .... ...+++.++|++.++..
T Consensus       171 d~~~~~~~~-~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          171 DPSTKETTL-LLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             ETTTTEEEE-EEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             eCCCCEEEE-eccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            765443211 1111 12234578888777677666666899999987531  11111 1223 77899999998766543


Q ss_pred             -----------CCcEEEEECCCceeeeEEecCC-----CCceeeEcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          207 -----------GSSVKFWDANHFGLVKGYNMPC-----NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       207 -----------~~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                                 .+.|..+|. .++.+..+..+.     .+..+.+  ..++++++...++.|..+++..
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE--HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE--ETTEEEEECSSCSEEEEEEC--
T ss_pred             CcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE--eCCEEEEeecCCCceEEEeccc
Confidence                       245777886 466677776542     1223333  2578888888889999998764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.92  E-value=6.7e-07  Score=80.84  Aligned_cols=232  Identities=14%  Similarity=0.127  Sum_probs=142.8

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCc----CCEEEEEECCCCcEEEEec-----CCCeEEEEeCCCCcEEEEeec
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHK----GAVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEH  101 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~----~~V~~v~~~~~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~  101 (264)
                      +..|+.++.|+.+..+|..+|+.+-.+....    ..+.+.-.-.++..++..+     .++.|..+|..+|+.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            4467888899999999999998664443210    1111000001444433322     268999999999998877642


Q ss_pred             C--Ce------------------------------EEEEEECCCCCEEEEeeCCC-------------------cEEEee
Q 024676          102 K--HI------------------------------VRACAFSEDTHLLLTGGFEK-------------------ILRIFD  130 (264)
Q Consensus       102 ~--~~------------------------------v~~~~~~~~~~~l~s~~~d~-------------------~i~~~d  130 (264)
                      .  .+                              ....+++|...+++.++.++                   .+..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            1  00                              11357888888888887665                   388899


Q ss_pred             CCCCCCCCeEecc-CC-------CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCceeEEecCCC------------
Q 024676          131 LNRPDAPPREVGN-SS-------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS------------  188 (264)
Q Consensus       131 ~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------------  188 (264)
                      .++++........ +.       .+........++.  ..++.++.+|.+.++|.++|+.+.......            
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            9888876655432 11       2222222222332  256677888999999999999874332110            


Q ss_pred             -CE------------------------EEEEEcCCCcEE-EEe------------------------------------C
Q 024676          189 -PV------------------------TSAEVSRDGRYI-TTA------------------------------------D  206 (264)
Q Consensus       189 -~v------------------------~~~~~s~~~~~l-~~~------------------------------------~  206 (264)
                       ++                        ..++++|+..++ +..                                    .
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence             01                        124566664332 210                                    1


Q ss_pred             CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       207 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++.|.-||+.+++.+=.+..........+.. .+.+++.|+.|+.++.||.++|+++
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEe-CCCEEEEECCcccchhhhhhcChhh
Confidence            2678899999998876665543332222332 3667778899999999999999875

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.91  E-value=2.5e-07  Score=78.53  Aligned_cols=177  Identities=14%  Similarity=0.146  Sum_probs=120.1

Q ss_pred             CCCeEEEEEeCC------CCcEEEeCCCCceEEeeeC--CcC-CEEEEEECCCCcEEEEec-------------------
Q 024676           29 PDGFFLVSASKD------SSPMLRNGETGDWIGTFEG--HKG-AVWSCCLDANALFSASGS-------------------   80 (264)
Q Consensus        29 ~~g~~l~t~s~d------~~v~i~~~~~~~~~~~~~~--H~~-~V~~v~~~~~~~~l~s~s-------------------   80 (264)
                      |+| .++++..+      +.+.+.|..+++.++++..  ... .-+.+.|+|+++.++|..                   
T Consensus       147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~  225 (462)
T 2ece_A          147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR  225 (462)
T ss_dssp             SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred             CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence            588 66677666      7899999999999888862  221 224477899999988874                   


Q ss_pred             CCCeEEEEeCCCCcEEEEeecC---CeEEEEEE--CCCCCEEEEee------CCCcEEEeeCCCCCCCCeEe---cc---
Q 024676           81 ADFTAKLWDALTGDEKHSFEHK---HIVRACAF--SEDTHLLLTGG------FEKILRIFDLNRPDAPPREV---GN---  143 (264)
Q Consensus        81 ~D~~v~iwd~~~~~~~~~~~~~---~~v~~~~~--~~~~~~l~s~~------~d~~i~~~d~~~~~~~~~~~---~~---  143 (264)
                      .+.+|.+||+.+++.+.++...   .....+.+  +|++++++.++      .+++|.+|..+.+.....+.   ..   
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v  305 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL  305 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred             cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence            4689999999998877777653   23445555  99999988877      45677654432221100000   00   


Q ss_pred             -------------CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC---CceeEEecCC-----------C----CEEE
Q 024676          144 -------------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---GKIVQTLETK-----------S----PVTS  192 (264)
Q Consensus       144 -------------~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~~~~~~~-----------~----~v~~  192 (264)
                                   .......+.++++++.+.++.-..+.|.+||+..   .+.+..+...           .    ....
T Consensus       306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~  385 (462)
T 2ece_A          306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM  385 (462)
T ss_dssp             CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred             cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence                         0123566778999999998888889999999852   3444444332           1    2577


Q ss_pred             EEEcCCCcEEEEeC
Q 024676          193 AEVSRDGRYITTAD  206 (264)
Q Consensus       193 ~~~s~~~~~l~~~~  206 (264)
                      ++++|||++|..++
T Consensus       386 ~~lSpDGk~LyVaN  399 (462)
T 2ece_A          386 LEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSSEEEEEC
T ss_pred             EEEcCCCCEEEEEc
Confidence            89999998876554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.90  E-value=1.6e-07  Score=82.33  Aligned_cols=185  Identities=12%  Similarity=0.163  Sum_probs=130.1

Q ss_pred             CCcEE-EEecCCCeEEEEeCCCCcEEE--EeecCCeEEEEEE-C-CCCCEEEEee------------------CCCcEEE
Q 024676           72 NALFS-ASGSADFTAKLWDALTGDEKH--SFEHKHIVRACAF-S-EDTHLLLTGG------------------FEKILRI  128 (264)
Q Consensus        72 ~~~~l-~s~s~D~~v~iwd~~~~~~~~--~~~~~~~v~~~~~-~-~~~~~l~s~~------------------~d~~i~~  128 (264)
                      ||+++ ++...+..|.+-|+.+.++..  .++.......+++ . |+++++++++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            77765 566777889999999998777  4444456778887 5 8999998884                  2456888


Q ss_pred             eeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC-------------------------------------CeEE
Q 024676          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-------------------------------------GGVR  171 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-------------------------------------~~v~  171 (264)
                      .|.++.+...+...  .+....++.++++.+.++++...                                     +.|.
T Consensus       180 ID~~t~~v~~qI~V--gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEe--CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            89886554333221  12334456677777777666432                                     2488


Q ss_pred             EEECCC--Cce-eEEecCCCCEEEEEEcCCCcEEEEeC--CCcEEEEECCCce------------eeeEEecCCCCceee
Q 024676          172 LWDARS--GKI-VQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFG------------LVKGYNMPCNTESAS  234 (264)
Q Consensus       172 iwd~~~--~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~------------~~~~~~~~~~~~~~~  234 (264)
                      +.|.++  ++. +..+........+.++|||+++..++  +.+|.++|+.+.+            .+........+.-..
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            888887  555 55555444567789999999876654  5799999998763            344444555666778


Q ss_pred             EcCCCCCEEEEecCCCeEEEEEcCc
Q 024676          235 LEPKLGNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       235 ~~~~~~~~~~~gs~d~~v~vwd~~~  259 (264)
                      |+++ |..+++--.|++|-+||.++
T Consensus       338 F~~d-G~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          338 FDGR-GNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECTT-SEEEEEETTTTEEEEEEHHH
T ss_pred             ECCC-CeEEEEEecCCcEEEEEhhH
Confidence            8886 57777888999999999876

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.88  E-value=8.1e-07  Score=79.06  Aligned_cols=228  Identities=14%  Similarity=0.083  Sum_probs=136.4

Q ss_pred             EEEEeCCCCcEEEeCCCCceEEeee--CCcC--CEEE-EEECCCCcEEEEec-----CCCeEEEEeCCCCcEEEEeecCC
Q 024676           34 LVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWS-CCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEHKH  103 (264)
Q Consensus        34 l~t~s~d~~v~i~~~~~~~~~~~~~--~H~~--~V~~-v~~~~~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~~  103 (264)
                      |+.++.|+.+.-.|..+|+.+=...  .+..  .+.+ -.+ .++..++.++     .++.|+-+|..+|+.+..+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            7788889999889999998653332  2110  1111 011 1444443332     48999999999999887765332


Q ss_pred             eE---------------------------------------EEEEECCCCCEEEEeeCC----------------CcEEE
Q 024676          104 IV---------------------------------------RACAFSEDTHLLLTGGFE----------------KILRI  128 (264)
Q Consensus       104 ~v---------------------------------------~~~~~~~~~~~l~s~~~d----------------~~i~~  128 (264)
                      +.                                       ....+++...+++.++.+                +.+..
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            21                                       123566777777776654                37888


Q ss_pred             eeCCCCCCCCeEeccCCC--------CeEEEEEe-cCCC--eEEEEeeCCCeEEEEECCCCceeEEecCC----------
Q 024676          129 FDLNRPDAPPREVGNSSG--------SIRTVAWL-HSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETK----------  187 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~--------~i~~~~~~-~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----------  187 (264)
                      +|.++++........+..        ....+... .++.  .+++.++.+|.+.++|.++|+.+......          
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~  362 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD  362 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence            899888776654433211        11112221 2232  45666778899999999999987655321          


Q ss_pred             ----CCE--------------------------EEEEEcCCCcEEEE---------------------------------
Q 024676          188 ----SPV--------------------------TSAEVSRDGRYITT---------------------------------  204 (264)
Q Consensus       188 ----~~v--------------------------~~~~~s~~~~~l~~---------------------------------  204 (264)
                          .++                          ..++++|+..++..                                 
T Consensus       363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p  442 (599)
T 1w6s_A          363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP  442 (599)
T ss_dssp             TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence                111                          13445555433211                                 


Q ss_pred             -e------CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          205 -A------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       205 -~------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                       +      ..+.+.-||+.+++.+=.+..........+.. .+.++..++.|+.++.||.++|+++
T Consensus       443 ~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          443 KGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             TSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe-cCCEEEEECCCCeEEEEECCCCCEE
Confidence             0      22568888998888765554332221111211 2556666899999999999999975

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.86  E-value=3.6e-06  Score=65.79  Aligned_cols=191  Identities=15%  Similarity=0.124  Sum_probs=124.7

Q ss_pred             ccCC--CeeeeEeccCCCCCeEEEEEeCCC--CcEEEeCCCCceEEeeeCCcCC-EEEEEECCCCcEEEEecCCCeEEEE
Q 024676           14 GHSR--PVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        14 ~h~~--~v~~~~~~~~~~~g~~l~t~s~d~--~v~i~~~~~~~~~~~~~~H~~~-V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      .|..  ...+|.|++    +.+..+.+.+|  .++.+|..+++.++.+...... -..+++..+..+ +..-.++.+.++
T Consensus        16 phd~~~ftqGL~~~~----~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly-~ltw~~~~v~v~   90 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR----GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLI-QLTWRNHEGFVY   90 (243)
T ss_dssp             ECCTTCCEEEEEEET----TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEE-EEESSSSEEEEE
T ss_pred             CCCCccccccEEEEC----CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEE-EEEeeCCEEEEE
Confidence            4544  456899983    66667777654  7899999999988877543221 133455443333 446778999999


Q ss_pred             eCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cC---CCCeEEEEEecCCCeEEEEe
Q 024676           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NS---SGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        89 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~---~~~i~~~~~~~~~~~~~~~~  164 (264)
                      |..+.+.+.+++....-..++  ++++.|+.+..++.+.++|..+.+....... ..   -..++.+.|.  ++.+.+..
T Consensus        91 D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanv  166 (243)
T 3mbr_X           91 DLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANV  166 (243)
T ss_dssp             ETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEE
T ss_pred             ECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEE
Confidence            999999998887654334444  4455666555688899999876543322211 11   1245566655  45566666


Q ss_pred             eCCCeEEEEECCCCceeEEecCC--------------CCEEEEEEcCCCc-EEEEeCCCcEEEEE
Q 024676          165 TDSGGVRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGR-YITTADGSSVKFWD  214 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~-~l~~~~~~~i~iwd  214 (264)
                      ..+..|.+.|.++++++..+...              ...+.++++|+++ +++++- ..=++|.
T Consensus       167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK-~wp~~~~  230 (243)
T 3mbr_X          167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK-RWPMLYE  230 (243)
T ss_dssp             TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET-TCSEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC-CCCcEEE
Confidence            66679999999999998776421              2468999999865 455553 3444444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.84  E-value=1.3e-06  Score=71.28  Aligned_cols=212  Identities=12%  Similarity=0.035  Sum_probs=134.4

Q ss_pred             EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeec-CCeEEEEEEC
Q 024676           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFS  111 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~  111 (264)
                      .|..++.++.+..++.. ++.+..+..+...+.++...+++... .++.++.+..+|.. +.....+.. ...+..+...
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d  185 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG  185 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence            46678888889999988 77665555555556666777777654 46678899999988 776665543 3345556677


Q ss_pred             CCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC-CE
Q 024676          112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PV  190 (264)
Q Consensus       112 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v  190 (264)
                      +++.+.+++   +.+..+| .+++...... .....+.++...++ +.+.++ +.++.|..+|. +++.+..+.... .+
T Consensus       186 ~~g~l~v~t---~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~-g~l~v~-t~~~gl~~~~~-~g~~~~~~~~~~~~~  257 (330)
T 3hxj_A          186 KDGTIYFGS---DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISED-GTIYVT-SLDGHLYAINP-DGTEKWRFKTGKRIE  257 (330)
T ss_dssp             TTCCEEEES---SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTT-SCEEEE-ETTTEEEEECT-TSCEEEEEECSSCCC
T ss_pred             CCCEEEEEe---CEEEEEC-CCCcEEEEEc-cCCcceeceEECCC-CeEEEE-cCCCeEEEECC-CCCEeEEeeCCCCcc
Confidence            778765544   7788888 5444322222 22233444554443 344443 45578888884 566655554332 23


Q ss_pred             EEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCc-eeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          191 TSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       191 ~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      .++.+.+++.+.+++.++.+..+|. +++.+..+..+.... +..... .+. +..|+.+|.+++....
T Consensus       258 ~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          258 SSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             SCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TCC-EEEECTTSCEEEEEC-
T ss_pred             ccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcC-CCE-EEEEcCCCeEEEEecc
Confidence            4456677888888877778999996 666666666654433 333323 354 6668889999988754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.79  E-value=4.7e-06  Score=74.05  Aligned_cols=229  Identities=17%  Similarity=0.145  Sum_probs=137.9

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeee--CC-------cCCEEEEEEC-CCCc-EEEEec------CCCeEEEEeCCCC
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFE--GH-------KGAVWSCCLD-ANAL-FSASGS------ADFTAKLWDALTG   93 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~H-------~~~V~~v~~~-~~~~-~l~s~s------~D~~v~iwd~~~~   93 (264)
                      +..|+.++.|+.+.-.|..+|+.+=.+.  .+       ..++  +.=. .+++ .++.++      .++.|.-+|..+|
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG  194 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG  194 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence            3467788889999999999998653332  22       1222  1111 1222 555554      3789999999999


Q ss_pred             cEEEEeecCC-eE-----------------------------------------EEEEECCCCCEEEEeeC---------
Q 024676           94 DEKHSFEHKH-IV-----------------------------------------RACAFSEDTHLLLTGGF---------  122 (264)
Q Consensus        94 ~~~~~~~~~~-~v-----------------------------------------~~~~~~~~~~~l~s~~~---------  122 (264)
                      +.+....... .+                                         ...+++|...+++.+..         
T Consensus       195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~  274 (582)
T 1flg_A          195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA  274 (582)
T ss_dssp             CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred             CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence            8877654321 00                                         12355666677776652         


Q ss_pred             -----------C----CcEEEeeCCCCCCCCeEecc-CC--------CCeEEEEEe-cCCC--eEEEEeeCCCeEEEEEC
Q 024676          123 -----------E----KILRIFDLNRPDAPPREVGN-SS--------GSIRTVAWL-HSDQ--TILSSCTDSGGVRLWDA  175 (264)
Q Consensus       123 -----------d----~~i~~~d~~~~~~~~~~~~~-~~--------~~i~~~~~~-~~~~--~~~~~~~~d~~v~iwd~  175 (264)
                                 |    +.+..+|..+++........ +.        .++. +... .++.  .+++.++.+|.+.++|.
T Consensus       275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~  353 (582)
T 1flg_A          275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDR  353 (582)
T ss_dssp             GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred             cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEEC
Confidence                       2    57888999888876655432 21        1221 1111 2333  35667778899999999


Q ss_pred             CCCceeEEecCCC--------------CE--------------------------------EEEEEcCCC-cEEEEe---
Q 024676          176 RSGKIVQTLETKS--------------PV--------------------------------TSAEVSRDG-RYITTA---  205 (264)
Q Consensus       176 ~~~~~~~~~~~~~--------------~v--------------------------------~~~~~s~~~-~~l~~~---  205 (264)
                      ++|+.+..+....              ++                                ..++++|+. .+++..   
T Consensus       354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~  433 (582)
T 1flg_A          354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW  433 (582)
T ss_dssp             TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred             CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence            9999886654321              00                                123455543 333322   


Q ss_pred             ------------------------------CCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676          206 ------------------------------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       206 ------------------------------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                                                    ..+.|.-||+.+++.+=.+..........+.. .+.+++.|+.|+.++.|
T Consensus       434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~  512 (582)
T 1flg_A          434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAF  512 (582)
T ss_dssp             EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEE
T ss_pred             ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEE
Confidence                                          13578889999988765554432222111211 25567779999999999


Q ss_pred             EcCcceee
Q 024676          256 DFHTGEQI  263 (264)
Q Consensus       256 d~~~g~~i  263 (264)
                      |.++|+++
T Consensus       513 D~~tG~~l  520 (582)
T 1flg_A          513 DAKSGKEL  520 (582)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCCEE
Confidence            99999976

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.70  E-value=6.4e-07  Score=73.17  Aligned_cols=214  Identities=17%  Similarity=0.090  Sum_probs=125.7

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecC-CeEEEE
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRAC  108 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~v~~~  108 (264)
                      +|. |..++.+  +..+|. +++.+..+...........+. ++ .+..++.++.+..+|.. +.....+... ..+..+
T Consensus        70 ~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  142 (330)
T 3hxj_A           70 DGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-ED-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP  142 (330)
T ss_dssp             TTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TT-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             CCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CC-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee
Confidence            555 4445544  777775 555433333222222222233 34 45567778899999988 7665555433 334455


Q ss_pred             EECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-
Q 024676          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-  187 (264)
Q Consensus       109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-  187 (264)
                      ...+++. +..++.++.+..+|.. ++...... .....+..+...+ ++.+.++.   +.|..+| .+++.+...... 
T Consensus       143 ~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~-~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~  214 (330)
T 3hxj_A          143 IVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGK-DGTIYFGS---DKVYAIN-PDGTEKWNFYAGY  214 (330)
T ss_dssp             EECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECT-TCCEEEES---SSEEEEC-TTSCEEEEECCSS
T ss_pred             EEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcC-CCEEEEEe---CEEEEEC-CCCcEEEEEccCC
Confidence            6676776 5557778899999986 54332222 1222333333333 44455443   7899999 777776665533 


Q ss_pred             CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCC-ceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       188 ~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ..+.++...++|.+.+++.++.+..+|. +++.+..+...... ......+  +..+..++.++.++.+|. +|+.
T Consensus       215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN--TDTIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT--TSCEEEECTTCEEEEECT-TSCE
T ss_pred             cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC--CCeEEEecCCCCEEEECC-CCcE
Confidence            4577788899988888877778888874 55555555543332 2233332  335667777888999996 5664

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.65  E-value=7.8e-06  Score=74.90  Aligned_cols=237  Identities=10%  Similarity=-0.022  Sum_probs=127.0

Q ss_pred             CeeeeEeccCCCCCeEEEEEeC-CC----CcEEEeCCCC-ceEE-eeeCCcCCEEEEEECCCCcEEEEecCC-----CeE
Q 024676           18 PVVDLFYSPITPDGFFLVSASK-DS----SPMLRNGETG-DWIG-TFEGHKGAVWSCCLDANALFSASGSAD-----FTA   85 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~-d~----~v~i~~~~~~-~~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~D-----~~v   85 (264)
                      .+....|+|  |||++||-+.. +|    +++++|+.++ +.+. .+..   ....++|+||++.|+..+.|     ..|
T Consensus       175 ~~~~~~~S~--PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAP--PEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECT--TTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecC--CCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            466677772  49988774432 33    4888999988 6321 1221   12357899999877665554     357


Q ss_pred             EEEeCCCCc--EEEEee--cCCeEEEEEECCCCCEEEEee---CCCcEEEeeCCCCCCCC--eEec-cCCCCeEEEEEec
Q 024676           86 KLWDALTGD--EKHSFE--HKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPP--REVG-NSSGSIRTVAWLH  155 (264)
Q Consensus        86 ~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~~--~~~~-~~~~~i~~~~~~~  155 (264)
                      .++++.++.  ....+.  .......+.|+|++++|+..+   ....+.++|+.++....  ..+. ...+......|. 
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-  328 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-  328 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-
Confidence            778887764  223332  233456788999999888655   23468888987653222  3222 223344555543 


Q ss_pred             CCCeEEEEeeCC----CeEEEEECCCC-ceeE-EecCCC--CEEEEEEcCCCcEEE-EeCCC--cEEEEEC-------CC
Q 024676          156 SDQTILSSCTDS----GGVRLWDARSG-KIVQ-TLETKS--PVTSAEVSRDGRYIT-TADGS--SVKFWDA-------NH  217 (264)
Q Consensus       156 ~~~~~~~~~~~d----~~v~iwd~~~~-~~~~-~~~~~~--~v~~~~~s~~~~~l~-~~~~~--~i~iwd~-------~~  217 (264)
                      .++.++.....+    ..|..+|+.++ +... .+....  .+..+.+..+ .+++ ...++  .|.++|+       ..
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~-~lv~~~~~~g~~~l~~~dl~~~~~~~~~  407 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSN-YLVVAGRRAGLTRIWTMMADSQDGVFKA  407 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSS-EEEEEEEETTEEEEEEEECCTTTSCCCT
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECC-EEEEEEEeCCEEEEEEEecccccccccC
Confidence            355555444332    36777787652 2222 233322  3445555432 3333 33455  4666775       23


Q ss_pred             ceeeeEEecCCCCceeeE------cCCCCCEEEEecCC---CeEEEEEcCcce
Q 024676          218 FGLVKGYNMPCNTESASL------EPKLGNIFIAGGED---MWVHVFDFHTGE  261 (264)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~gs~d---~~v~vwd~~~g~  261 (264)
                      ++..+.+..+.......+      ..+.+.++++.+..   ..++.+|+.+|+
T Consensus       408 g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          408 GTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             CccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            221333433332222233      23334555554443   356677776664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.64  E-value=3.6e-05  Score=62.48  Aligned_cols=222  Identities=11%  Similarity=0.060  Sum_probs=128.8

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC-CC-eEEEEeCCCCcE
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DF-TAKLWDALTGDE   95 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~-D~-~v~iwd~~~~~~   95 (264)
                      ....++|+|   +|+.+++-..++.|..++... +....+.. .+....+++++++.++++... ++ .|..+|..++..
T Consensus        33 ~pegia~~~---~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           33 FLENLASAP---DGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CEEEEEECT---TSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcceEEECC---CCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            345788885   788777766788888888765 33333322 245788999999987665433 22 465667677765


Q ss_pred             EEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeE--------e-ccCCCCeEEEEEecCCCeEEEEe
Q 024676           96 KHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--------V-GNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        96 ~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~--------~-~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      .....  .......++..+.+..+++-..++.+..+|...+......        . ...-.....+  .++++.++++.
T Consensus       108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d  185 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN  185 (306)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred             EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence            43332  2223455555555554554445788888887542110000        0 0001123344  56667777777


Q ss_pred             eCCCeEEEEECCC-Cce--eEEecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeee--EEecC-CCCceeeEc-
Q 024676          165 TDSGGVRLWDARS-GKI--VQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVK--GYNMP-CNTESASLE-  236 (264)
Q Consensus       165 ~~d~~v~iwd~~~-~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~--~~~~~-~~~~~~~~~-  236 (264)
                      ...+.|..+|+.. ++.  ...+........++++++|+++++.. .+.|..+|.. ++...  .+..+ ..+..+++. 
T Consensus       186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g  264 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ  264 (306)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence            7778999999875 331  11121112345688999998776654 5789999975 44322  23333 345566676 


Q ss_pred             --CCCCCEEEEec
Q 024676          237 --PKLGNIFIAGG  247 (264)
Q Consensus       237 --~~~~~~~~~gs  247 (264)
                        ++.+.++++.+
T Consensus       265 ~~~d~~~LyVt~~  277 (306)
T 2p4o_A          265 TEGDCTAIYVVTN  277 (306)
T ss_dssp             STTTTTEEEEEEC
T ss_pred             ccCCCCEEEEECC
Confidence              54455666544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.55  E-value=6.7e-06  Score=74.33  Aligned_cols=189  Identities=11%  Similarity=0.104  Sum_probs=119.4

Q ss_pred             CCCcEEEeCCCCceEEeeeC---Cc---------------------------CC-EEEEEECCCCcEEEEecCCC-----
Q 024676           40 DSSPMLRNGETGDWIGTFEG---HK---------------------------GA-VWSCCLDANALFSASGSADF-----   83 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~---H~---------------------------~~-V~~v~~~~~~~~l~s~s~D~-----   83 (264)
                      ++.+..+|..+|+.+-.+..   ..                           +. ...++++++...++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            57899999999987644431   00                           00 11357777777777776665     


Q ss_pred             --------------eEEEEeCCCCcEEEEeecC----------CeEEEEEECCCCC---EEEEeeCCCcEEEeeCCCCCC
Q 024676           84 --------------TAKLWDALTGDEKHSFEHK----------HIVRACAFSEDTH---LLLTGGFEKILRIFDLNRPDA  136 (264)
Q Consensus        84 --------------~v~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~s~~~d~~i~~~d~~~~~~  136 (264)
                                    .|.-+|..+++.+..++..          .+.....+..+++   .++.++.++.+.++|..+++.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          4999999999988877632          2332223333554   688889999999999988775


Q ss_pred             CCeEeccC----------CCC-------------------------eEEEEEecCCCeEEEE------------------
Q 024676          137 PPREVGNS----------SGS-------------------------IRTVAWLHSDQTILSS------------------  163 (264)
Q Consensus       137 ~~~~~~~~----------~~~-------------------------i~~~~~~~~~~~~~~~------------------  163 (264)
                      ........          .+.                         ...+++.|..+.+++.                  
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            42111000          000                         0113445544443331                  


Q ss_pred             -----------------eeCCCeEEEEECCCCceeEEecCCCCEEEEEEc-CCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676          164 -----------------CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVS-RDGRYITTADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       164 -----------------~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  225 (264)
                                       ...++.|..||+++++.+.......+.....+. .++..+++..++.++.||.++++.+..+.
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence                             112378999999999998777654444332233 34455566668999999999999998887


Q ss_pred             cCC
Q 024676          226 MPC  228 (264)
Q Consensus       226 ~~~  228 (264)
                      .+.
T Consensus       497 ~~~  499 (668)
T 1kv9_A          497 AQS  499 (668)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            754

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.49  E-value=0.00023  Score=56.20  Aligned_cols=197  Identities=11%  Similarity=0.131  Sum_probs=132.9

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee--eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~--~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .|=.+.+.+|+|+|.  ++.+.++...++.|...|.. ++.++.+  .+. .....+++.+++.++++.-.++.+.++++
T Consensus        23 ~g~~~~lSGla~~~~--~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           23 AGITNNISSLTWSAQ--SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             TTCCSCEEEEEEETT--TTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CCcccCcceeEEeCC--CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            455567999999972  34555556777778778887 8777765  333 45678899999988777667788888887


Q ss_pred             CCCcE---EEEee-------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCC--CCCCCeEec-------cCCCCeEEE
Q 024676           91 LTGDE---KHSFE-------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPREVG-------NSSGSIRTV  151 (264)
Q Consensus        91 ~~~~~---~~~~~-------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~--~~~~~~~~~-------~~~~~i~~~  151 (264)
                      .....   .....       .......++|+|.++.|+++.......+|.+..  .........       ........+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   12221       223468999999998888777665556665531  000111110       122356788


Q ss_pred             EEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC----------CCEEEEEEcCCCcEEEEeCCCcEEEEE
Q 024676          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSSVKFWD  214 (264)
Q Consensus       152 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~~~i~iwd  214 (264)
                      ++.|..+.+++.+...+.|-++|.. ++.+..+...          .....+++.++|++.++++.+.+..+.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence            8888888888887888899999976 5565554322          257899999999988888877555554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.48  E-value=0.0004  Score=59.36  Aligned_cols=236  Identities=11%  Similarity=0.057  Sum_probs=132.9

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC---Ce-EEEEeCCCC
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FT-AKLWDALTG   93 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D---~~-v~iwd~~~~   93 (264)
                      ...+|+++|.+.+|+..++ ...+.|+.++..+++... +.+.......+++++++.+.++....   .. +...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            3457888862113554444 333788889988776543 33344567899999999855554321   22 222222221


Q ss_pred             cE-EEEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEec-cCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           94 DE-KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        94 ~~-~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      .. ...+..-.....++++| ++.+.++-..++.|+.++..++........ ........+++.+++..++++....+.|
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            11 11222223345678899 666655555677899998865543111111 1122234688888877677776777899


Q ss_pred             EEEECC--CCce--eEEecC----------------CCCEEEEEE---------cCCCcEEEEeC-CCcEEEEECCCcee
Q 024676          171 RLWDAR--SGKI--VQTLET----------------KSPVTSAEV---------SRDGRYITTAD-GSSVKFWDANHFGL  220 (264)
Q Consensus       171 ~iwd~~--~~~~--~~~~~~----------------~~~v~~~~~---------s~~~~~l~~~~-~~~i~iwd~~~~~~  220 (264)
                      ..+|+.  +++.  ...+..                -.....+++         .++|.++++-. ...|+.++. .+. 
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-  375 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-  375 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-
Confidence            998865  3321  111110                123567888         77777766644 568988885 443 


Q ss_pred             eeEEecC-------------------CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          221 VKGYNMP-------------------CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       221 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      +.++...                   ..+..+++.+..+.++++=..+..|+.+++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            3333211                   012344555445677777666777777765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.46  E-value=0.00045  Score=58.05  Aligned_cols=204  Identities=7%  Similarity=-0.116  Sum_probs=122.7

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      ..+|+|++  .++....+-...+.|..++...+.....+.........+++++. +.+.++-...+.|.+.+........
T Consensus       118 ~~gl~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          118 AIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             EEEEEEET--TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             cEEEEEec--CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            45677875  24555555556667777777655433333222233456788864 4455666677889888876554333


Q ss_pred             Eee-cCCeEEEEEECCCCCEEEEeeC-C-CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676           98 SFE-HKHIVRACAFSEDTHLLLTGGF-E-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (264)
Q Consensus        98 ~~~-~~~~v~~~~~~~~~~~l~s~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd  174 (264)
                      ... .-.....++++|.+..|+.+.. . +.|..++++... ........-.....+++.+.++.+..+-...+.|..+|
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            332 2245688999997776665543 3 678888876432 22222222334678899887888888877778999999


Q ss_pred             CCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676          175 ARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       175 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  225 (264)
                      +........+. .......+++..+..|++-...+.|..+|..+++.++.+.
T Consensus       275 ~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          275 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            87543322222 2234667777444334444445788888866655444443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.44  E-value=0.00077  Score=62.04  Aligned_cols=232  Identities=9%  Similarity=0.124  Sum_probs=139.8

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee-eCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~-~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      |.++...+   +|++.+ |+.++-+..++..++++.... ..+...|.++...+++.+.+....+| +..||..++....
T Consensus       175 i~~i~~d~---~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~  249 (795)
T 4a2l_A          175 IASTLYRQ---GDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKN  249 (795)
T ss_dssp             CEEEEEEE---TTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEE
T ss_pred             eEEEEECC---CCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEE
Confidence            66666653   565544 565555778888777654322 12456788888888887666544445 7788977664332


Q ss_pred             Eee--------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe------ccCCCCeEEEEEecCCCeEEEE
Q 024676           98 SFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV------GNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        98 ~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      ...        ....|.++..++++.+.+. +.+ -+.+||..+........      .-....|.++..-++ +.+- .
T Consensus       250 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~lW-i  325 (795)
T 4a2l_A          250 YLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ-GGMW-L  325 (795)
T ss_dssp             ECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT-SCEE-E
T ss_pred             eecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC-cCEE-E
Confidence            211        1346899999998887664 444 57888875442211100      012245777765443 3333 3


Q ss_pred             eeCCCeEEEEECCCCceeEEec-------CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecC---------
Q 024676          164 CTDSGGVRLWDARSGKIVQTLE-------TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP---------  227 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~---------  227 (264)
                      ++.++.|..|+..+++......       ....|.++...++|.+.++..++.|..||..+... +.+...         
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF-TSYTLQEDESARGIG  404 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE-EEECCC------CCS
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE-EEEecCCCCcccCCC
Confidence            4566789999987665322111       13459999999999988888777899999876543 223211         


Q ss_pred             CC-CceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          228 CN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       228 ~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .. ..++...+ .+..+..|..++-+..||..+++
T Consensus       405 ~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          405 SNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             CSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCC
T ss_pred             CccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCc
Confidence            11 12333333 35646667776779999987664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.39  E-value=0.0005  Score=55.66  Aligned_cols=203  Identities=11%  Similarity=-0.009  Sum_probs=119.6

Q ss_pred             eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCC--cEEEee
Q 024676           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK--ILRIFD  130 (264)
Q Consensus        53 ~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--~i~~~d  130 (264)
                      .+..|... .....++|++++.++++-..++.|..||.... ....+........++++++++++++.....  .+..++
T Consensus        24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence            34455332 34578999999987777778899999997654 344444556788999999999766554332  355566


Q ss_pred             CCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce-eEEe-------c---CCCCEEEEEEcCCC
Q 024676          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTL-------E---TKSPVTSAEVSRDG  199 (264)
Q Consensus       131 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~-------~---~~~~v~~~~~s~~~  199 (264)
                      ..+++...............++.. .+..++++...++.|..+|..+++. +...       .   .-...+.+  +|++
T Consensus       102 ~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg  178 (306)
T 2p4o_A          102 KSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG  178 (306)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred             CCCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence            655543211111111223334433 3445555555568899999876531 1110       0   11234555  7887


Q ss_pred             cEE-EEe-CCCcEEEEECCC-cee--eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          200 RYI-TTA-DGSSVKFWDANH-FGL--VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       200 ~~l-~~~-~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .++ ++. ..+.|..+|+.. +..  ...+.....+..+++.++ |.++++-...+.|.++|.. |+.
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE-GNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT-CCEEEECBTTCCEEEECTT-CCE
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCC-CCEEEEeCCCCeEEEECCC-CCE
Confidence            654 343 357899999864 221  222221233455666664 7888887778889999864 543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.39  E-value=4.8e-05  Score=67.41  Aligned_cols=145  Identities=17%  Similarity=0.128  Sum_probs=92.6

Q ss_pred             eEEEEeCCCCcEEEEeecC-----------CeEEEEEECCCCC---EEEEeeCCCcEEEeeCCCCCCCCeEeccC-----
Q 024676           84 TAKLWDALTGDEKHSFEHK-----------HIVRACAFSEDTH---LLLTGGFEKILRIFDLNRPDAPPREVGNS-----  144 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~-----------~~v~~~~~~~~~~---~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-----  144 (264)
                      .|..+|..+++.+..++..           .++. +...++++   .++.++.++.+.++|..+++.........     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            6899999999988877522           2222 22224563   56778889999999988876543322111     


Q ss_pred             ------C-CCe--------------------------EEEEEecCCCeEEEEee--------------------------
Q 024676          145 ------S-GSI--------------------------RTVAWLHSDQTILSSCT--------------------------  165 (264)
Q Consensus       145 ------~-~~i--------------------------~~~~~~~~~~~~~~~~~--------------------------  165 (264)
                            . .++                          ..+++.|..+.+++...                          
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                  0 000                          12345555555444321                          


Q ss_pred             ----------CCCeEEEEECCCCceeEEecCCCCEEEEE-EcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676          166 ----------DSGGVRLWDARSGKIVQTLETKSPVTSAE-VSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN  229 (264)
Q Consensus       166 ----------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~  229 (264)
                                .++.|..||+++++.+..+....++.... ...++..++++.++.++.+|.++++.+-.+.....
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  506 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence                      34789999999999888776543332222 22356666666789999999999999988887543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.35  E-value=0.0016  Score=59.82  Aligned_cols=233  Identities=12%  Similarity=0.125  Sum_probs=139.1

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC-------CcCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-------HKGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~-------H~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      ...|.+|...+   +|.+.+ |+.++-+..++..+++.......       ....|+++...+++.+.+.. .+| +.+|
T Consensus       214 ~~~i~~i~~d~---~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G-l~~~  287 (795)
T 4a2l_A          214 TKQIQAILQQS---PTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FND-LNIY  287 (795)
T ss_dssp             CCCEEEEEEEE---TTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SSC-EEEE
T ss_pred             CCeeEEEEEcC---CCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CCh-hheE
Confidence            34566666653   566554 44444477888877765432211       24679999999888765543 344 7888


Q ss_pred             eCCCCcEEEEee--------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-----ccCCCCeEEEEEec
Q 024676           89 DALTGDEKHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-----GNSSGSIRTVAWLH  155 (264)
Q Consensus        89 d~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~  155 (264)
                      |..++.......        ....|.++..++++.+.+ |+.++-+..++...........     .-....|.++...+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred             cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence            977665333221        124699999999987654 6677778888764332111000     01233577776544


Q ss_pred             CCCeEEEEeeCCCeEEEEECCCCceeEEec---------CCCCEEEEEEcCCCc-EEEEeCCCcEEEEECCCceeeeEEe
Q 024676          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE---------TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~s~~~~-~l~~~~~~~i~iwd~~~~~~~~~~~  225 (264)
                      + +.+- .++.++.|..||..+++...-..         ....|.++...++++ +.++..++.+..||..+++. ..+.
T Consensus       367 ~-g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~  443 (795)
T 4a2l_A          367 D-KNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFN  443 (795)
T ss_dssp             T-SCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEEC
T ss_pred             C-CCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEee
Confidence            3 3333 34566789999998876543221         134688999999998 77777777899999877653 3343


Q ss_pred             c-----CC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          226 M-----PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       226 ~-----~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .     +. ...++...+ .+.+.+ |+.+| +.+||..+++
T Consensus       444 ~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~G-l~~~~~~~~~  482 (795)
T 4a2l_A          444 QRNSQLVNENVYAILPDG-EGNLWL-GTLSA-LVRFNPEQRS  482 (795)
T ss_dssp             TTTSCCSCSCEEEEEECS-SSCEEE-EESSC-EEEEETTTTE
T ss_pred             cCCCCcCCCeeEEEEECC-CCCEEE-EecCc-eeEEeCCCCe
Confidence            2     11 122333333 355444 44444 8888877654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.35  E-value=0.00021  Score=58.23  Aligned_cols=193  Identities=12%  Similarity=0.062  Sum_probs=111.7

Q ss_pred             EEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeec---------------------CCeEEEEEECC-CCCEEEEee
Q 024676           64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH---------------------KHIVRACAFSE-DTHLLLTGG  121 (264)
Q Consensus        64 V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---------------------~~~v~~~~~~~-~~~~l~s~~  121 (264)
                      -.++++++++.++.++..++.|..||..++... .+..                     ...+..+++++ +++ |+.+.
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d   98 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD   98 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence            356778888886677778889999988765432 2211                     12467889998 555 45554


Q ss_pred             CCCcEEEeeCCCCCCCCeE--ec-cCCCCeEEEEEec-CCCeEEEEeeC-----------------CCeEEEEECCCCce
Q 024676          122 FEKILRIFDLNRPDAPPRE--VG-NSSGSIRTVAWLH-SDQTILSSCTD-----------------SGGVRLWDARSGKI  180 (264)
Q Consensus       122 ~d~~i~~~d~~~~~~~~~~--~~-~~~~~i~~~~~~~-~~~~~~~~~~~-----------------d~~v~iwd~~~~~~  180 (264)
                      ..+.+..+|..+++.....  .. ........++..+ ++ .+.++...                 ++.|..||..+++.
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            4555788886544321110  00 0112356677666 55 44444322                 36788899887765


Q ss_pred             eEEecCCCCEEEEEEcCCCcEE-EEe-CCCcEEEEECCCce--eeeEE-ecCCCCceeeEcCCCCCEEEEecC-------
Q 024676          181 VQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFG--LVKGY-NMPCNTESASLEPKLGNIFIAGGE-------  248 (264)
Q Consensus       181 ~~~~~~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~gs~-------  248 (264)
                      ..........+.++++|+++++ ++. ..+.|..|++....  ....+ ..+. +..+.+.++ |.++++...       
T Consensus       178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~-G~l~va~~~~~~~~~~  255 (322)
T 2fp8_A          178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD-GHFWVSSSEELDGNMH  255 (322)
T ss_dssp             EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT-SCEEEEEEEETTSSTT
T ss_pred             EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC-CCEEEEecCccccccc
Confidence            3322222345678999999754 443 34789999986421  11222 2222 455666664 676666544       


Q ss_pred             ---CCeEEEEEcCccee
Q 024676          249 ---DMWVHVFDFHTGEQ  262 (264)
Q Consensus       249 ---d~~v~vwd~~~g~~  262 (264)
                         .+.|..+|.+ |+.
T Consensus       256 ~~~~~~v~~~d~~-G~~  271 (322)
T 2fp8_A          256 GRVDPKGIKFDEF-GNI  271 (322)
T ss_dssp             SCEEEEEEEECTT-SCE
T ss_pred             CCCccEEEEECCC-CCE
Confidence               4667777753 543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=0.001  Score=56.71  Aligned_cols=235  Identities=10%  Similarity=0.026  Sum_probs=128.6

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCC----eEEEEeCCCC
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADF----TAKLWDALTG   93 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~----~v~iwd~~~~   93 (264)
                      ...|+++|.  ++..|..+...+.|+.++..++... .+.........++|++++.++ ++...++    .+...+....
T Consensus       139 P~~lavdp~--~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          139 AVWLSFDPK--NHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             CCEEEEETT--EEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCEEEECCC--CCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            356777741  2334555544477888888776543 333344557889999999855 4443222    2333332221


Q ss_pred             cE-EEEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           94 DE-KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        94 ~~-~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      .. ...+........++++| ++.++++-...+.|..++...+................+++.+++..++++....+.|.
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            11 12222223345678999 66666655567889999986543211111111234567888888876777766778999


Q ss_pred             EEECCC--Cce--eEEecC----------------CCCEE-EEEEc--------CCCcEEEEeC-CCcEEEEECCCceee
Q 024676          172 LWDARS--GKI--VQTLET----------------KSPVT-SAEVS--------RDGRYITTAD-GSSVKFWDANHFGLV  221 (264)
Q Consensus       172 iwd~~~--~~~--~~~~~~----------------~~~v~-~~~~s--------~~~~~l~~~~-~~~i~iwd~~~~~~~  221 (264)
                      .+|...  ++.  ...+..                ..... .+++.        ++|.++++-. ...|+.++. .+...
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~  374 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT  374 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE
Confidence            988653  221  111110                01123 45553        4466655543 467888884 44332


Q ss_pred             eEEecC------------------CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          222 KGYNMP------------------CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       222 ~~~~~~------------------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      ......                  ..+..+++.+..+.++++-..+..|+.++.
T Consensus       375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            222110                  023345555544677777777777777764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.33  E-value=1.7e-05  Score=71.50  Aligned_cols=228  Identities=12%  Similarity=0.097  Sum_probs=123.1

Q ss_pred             CCeEEEEEeCCC-----------CcEEEeCCCCceEE--eee-CCcCCEEEEEECCCCcEEEEec-CCCeEEEEeCCCCc
Q 024676           30 DGFFLVSASKDS-----------SPMLRNGETGDWIG--TFE-GHKGAVWSCCLDANALFSASGS-ADFTAKLWDALTGD   94 (264)
Q Consensus        30 ~g~~l~t~s~d~-----------~v~i~~~~~~~~~~--~~~-~H~~~V~~v~~~~~~~~l~s~s-~D~~v~iwd~~~~~   94 (264)
                      +|+.++.|+.+.           .+.+||..++++..  .+. .+.....++++..+++.++.|+ .+..+.+||..+..
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            788888887654           47789999987643  232 2333334567778888888887 45689999987663


Q ss_pred             EEEEee--cCCeEEEEEECCCCCEEEEee-CC-----CcEEEeeCCCCCCCCeEecc------CCCCeEEEEEecCCCeE
Q 024676           95 EKHSFE--HKHIVRACAFSEDTHLLLTGG-FE-----KILRIFDLNRPDAPPREVGN------SSGSIRTVAWLHSDQTI  160 (264)
Q Consensus        95 ~~~~~~--~~~~v~~~~~~~~~~~l~s~~-~d-----~~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~  160 (264)
                      -.....  ....-..++..+++++++.|+ .+     ..+.+||..+.+.  .....      ....-. ..+..++..+
T Consensus       277 W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W--~~~~~~~~~p~~~~~~~-~~~~~~~~iy  353 (656)
T 1k3i_A          277 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW--TSLPNAKVNPMLTADKQ-GLYRSDNHAW  353 (656)
T ss_dssp             EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE--EEETTSCSGGGCCCCTT-GGGTTTCSCC
T ss_pred             eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc--eeCCCcccccccccccc-ceeecCCceE
Confidence            211111  111113445667899999888 34     5688899865432  22100      000000 0001122222


Q ss_pred             EEEee--------CCCeEEEEECCCCceeEEecCC----------CCEEEEEEc-CCCcEEEEeC-CC-----------c
Q 024676          161 LSSCT--------DSGGVRLWDARSGKIVQTLETK----------SPVTSAEVS-RDGRYITTAD-GS-----------S  209 (264)
Q Consensus       161 ~~~~~--------~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~s-~~~~~l~~~~-~~-----------~  209 (264)
                      +..+.        ....+..||.++..........          ..-..+.+. .++++++.+. +.           .
T Consensus       354 v~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~  433 (656)
T 1k3i_A          354 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI  433 (656)
T ss_dssp             EEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred             EEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceE
Confidence            32221        1246788999877643322111          012233333 3666665542 11           5


Q ss_pred             EEEEECCCceeeeEE--ecCCCC--ceeeEcCCCCCEEEEecCC-----------CeEEEEEcCcce
Q 024676          210 VKFWDANHFGLVKGY--NMPCNT--ESASLEPKLGNIFIAGGED-----------MWVHVFDFHTGE  261 (264)
Q Consensus       210 i~iwd~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~gs~d-----------~~v~vwd~~~g~  261 (264)
                      +.+||..+..-...-  .++...  ......+ ++++++.||.+           ..+.+||..+++
T Consensus       434 v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          434 ITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             EECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             EEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence            778887665432221  222221  1223344 58999999865           568999987654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.28  E-value=4.6e-05  Score=69.82  Aligned_cols=196  Identities=9%  Similarity=0.003  Sum_probs=109.2

Q ss_pred             CCcC-CEEEEEEC-CCCcEEEEe-cC----CCeEEEEeCCCC-cEEEEeecCCeEEEEEECCCCCEEEEeeCC-----Cc
Q 024676           59 GHKG-AVWSCCLD-ANALFSASG-SA----DFTAKLWDALTG-DEKHSFEHKHIVRACAFSEDTHLLLTGGFE-----KI  125 (264)
Q Consensus        59 ~H~~-~V~~v~~~-~~~~~l~s~-s~----D~~v~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~  125 (264)
                      +|.- .+...+|+ ||+++++-+ +.    ..+|+++|+.++ +.+... .......+.|+|+++.|+....|     ..
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            3443 57788999 999987632 22    236999999988 632110 01112357899999888877665     25


Q ss_pred             EEEeeCCCCCCCCeEec--cCCCCeEEEEEecCCCeEEEEeeC--CCeEEEEECCCCc-ee--EEecC--CCCEEEEEEc
Q 024676          126 LRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGK-IV--QTLET--KSPVTSAEVS  196 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~-~~--~~~~~--~~~v~~~~~s  196 (264)
                      |..+++.++........  ........+.|++++..++.+...  ...|.++|+.++. ..  ..+..  .....++.++
T Consensus       249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred             EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence            77788866532222221  122345567899988887766543  3468888998762 12  33322  2344555555


Q ss_pred             CCCcEEEEeC-C--C--cEEEEECCCceeeeE--EecCCCCceeeEcCCCCCEEEEecCCCeEEEE
Q 024676          197 RDGRYITTAD-G--S--SVKFWDANHFGLVKG--YNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (264)
Q Consensus       197 ~~~~~l~~~~-~--~--~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vw  255 (264)
                      .++.++..++ +  +  .|..+|+.+....+.  +..........+....+.++++...|+..++|
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence            5555544443 2  2  466667654211111  22221111122222245677788888876655

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.27  E-value=0.00054  Score=60.80  Aligned_cols=146  Identities=14%  Similarity=0.135  Sum_probs=91.7

Q ss_pred             CeEEEEeCCCCcEEEEeecC-----------CeEEEEEEC-CCCC---EEEEeeCCCcEEEeeCCCCCCCCeEeccCC--
Q 024676           83 FTAKLWDALTGDEKHSFEHK-----------HIVRACAFS-EDTH---LLLTGGFEKILRIFDLNRPDAPPREVGNSS--  145 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~-----------~~v~~~~~~-~~~~---~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~--  145 (264)
                      +.|.-+|..+++.+..++..           .++. +... .+++   .++.++.++.+.++|.++++..........  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            68999999999988887532           1222 1221 4563   678889999999999887765433221100  


Q ss_pred             ---------CC---------------------------------eEEEEEecCCCeEEEEe-------------------
Q 024676          146 ---------GS---------------------------------IRTVAWLHSDQTILSSC-------------------  164 (264)
Q Consensus       146 ---------~~---------------------------------i~~~~~~~~~~~~~~~~-------------------  164 (264)
                               +.                                 ...+++.|..+.+++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                     00                                 00123333333333321                   


Q ss_pred             -------------eCCCeEEEEECCCCceeEEecCCCCEEE-EEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC
Q 024676          165 -------------TDSGGVRLWDARSGKIVQTLETKSPVTS-AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN  229 (264)
Q Consensus       165 -------------~~d~~v~iwd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~  229 (264)
                                   ..++.|.-||+++++.+.......+... .....++..++++.|+.++.||.++++.+-.++.+..
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g  528 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence                         1258899999999998877654433322 1123456666666789999999999999988887644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.25  E-value=0.0014  Score=54.97  Aligned_cols=219  Identities=7%  Similarity=-0.108  Sum_probs=134.4

Q ss_pred             CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCCcEEEEeec-CCeEEEEEECCCCCEE
Q 024676           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFSEDTHLL  117 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  117 (264)
                      ...|+..+...++....+.+. .....++|++. +.+..+-...+.|..++...+.....+.. ......+++++.+..|
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  173 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  173 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred             CccceeeccCCCcEEEEecCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence            356777787766544434433 34678999964 45556666778999999877654433322 2234678888755555


Q ss_pred             E-EeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC-CeEEEEECCCCceeEEec-CCCCEEEEE
Q 024676          118 L-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLE-TKSPVTSAE  194 (264)
Q Consensus       118 ~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~-~~~~v~~~~  194 (264)
                      + +-...+.|.+.+++... ..............++..|.++.++.+-... +.|...++.......... .-...+.++
T Consensus       174 Y~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence            4 44556788888876432 2222222224567788888788877776655 788888887544332222 234578999


Q ss_pred             EcCCCc-EEEEe-CCCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          195 VSRDGR-YITTA-DGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       195 ~s~~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ++|++. ++.+- ..+.|..+|+........+.. ...+..+++.  .+.++++-...+.|..+|..+|+.
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcc
Confidence            998654 43443 356888888764332222221 1233444452  467888888889999998656653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.21  E-value=0.0015  Score=53.24  Aligned_cols=204  Identities=13%  Similarity=-0.078  Sum_probs=120.8

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC---CceEE-eeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCC
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIG-TFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~---~~~~~-~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~   91 (264)
                      ....+++|++  .++...++-...+.|..++...   +.... .+.........+++++. +.+.++-...+.|.+.+..
T Consensus        30 ~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           30 RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            3456788886  2345555656667788888765   12222 23222234567888864 4455666778899999987


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCC--CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      ......... .......++++|.+..|+.+...  +.|...+++... ........-.....+++.++++.+..+-...+
T Consensus       108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence            654433333 23456889999977666655543  578878775322 11111122335678888888888888777778


Q ss_pred             eEEEEECCCCceeEEec---CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEE
Q 024676          169 GVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~  224 (264)
                      .|..+|+..........   .......+++.. +.++.+ ...+.|..+|..+++.+..+
T Consensus       187 ~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             eEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            99999997533221111   123356777754 444444 34578888887665544333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.19  E-value=0.0014  Score=53.91  Aligned_cols=201  Identities=14%  Similarity=0.274  Sum_probs=123.5

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC----Cc---EE-EEecC--CCeEEEEeC
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN----AL---FS-ASGSA--DFTAKLWDA   90 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~----~~---~l-~s~s~--D~~v~iwd~   90 (264)
                      ++--+|..|...++++....+-+.+||+ +|+.++.+..  +.++.|.+-|+    ++   ++ +|.-.  +.+|.+|++
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence            3444566667777888888889999999 7888888764  45666665542    22   33 44444  589999976


Q ss_pred             --CCCcEEEEee-------cC-CeEEEEEE--CCC-CC-EEEEeeCCCcEEEeeCC---CCCCC---CeEeccCCCCeEE
Q 024676           91 --LTGDEKHSFE-------HK-HIVRACAF--SED-TH-LLLTGGFEKILRIFDLN---RPDAP---PREVGNSSGSIRT  150 (264)
Q Consensus        91 --~~~~~~~~~~-------~~-~~v~~~~~--~~~-~~-~l~s~~~d~~i~~~d~~---~~~~~---~~~~~~~~~~i~~  150 (264)
                        .++. +..+.       .. ..+..+|+  +|. ++ +++....++.+..|++.   .+...   .+.+ ...+.+..
T Consensus       107 Dp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~Eg  184 (355)
T 3amr_A          107 DGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEG  184 (355)
T ss_dssp             CTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEE
T ss_pred             CCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcce
Confidence              3443 44331       11 44566777  774 44 57777788999998873   22111   1122 23345666


Q ss_pred             EEEecCCCeEEEEeeCCCeEEEEECC-----CCceeEEecCC---CCEEEEEE--cCCCc-E-EEEeC-CCcEEEEECC-
Q 024676          151 VAWLHSDQTILSSCTDSGGVRLWDAR-----SGKIVQTLETK---SPVTSAEV--SRDGR-Y-ITTAD-GSSVKFWDAN-  216 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~v~iwd~~-----~~~~~~~~~~~---~~v~~~~~--s~~~~-~-l~~~~-~~~i~iwd~~-  216 (264)
                      ++.-+..+.++++ -++..|-.+|.+     +++.+..+...   ..+..+++  .++++ + ++++. +.+..+||.+ 
T Consensus       185 cvvDd~~g~Lyv~-eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          185 MAADDEYGRLYIA-EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEETTTTEEEEE-ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEcCCCCeEEEe-cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            6666556665554 555556666654     34555554322   35777777  56655 4 45554 4689999997 


Q ss_pred             CceeeeEEecC
Q 024676          217 HFGLVKGYNMP  227 (264)
Q Consensus       217 ~~~~~~~~~~~  227 (264)
                      +++.+..|.+.
T Consensus       264 ~~~~vg~f~Ig  274 (355)
T 3amr_A          264 KNKYVADFRIT  274 (355)
T ss_dssp             TCCEEEEEEEC
T ss_pred             CCcEEEEEEec
Confidence            67788888653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.19  E-value=0.0018  Score=53.55  Aligned_cols=203  Identities=7%  Similarity=-0.117  Sum_probs=119.7

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCCcEEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKH   97 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~   97 (264)
                      ..+|+|++  .++....+-...+.|..++...+.....+.........+++++. +.+..+-...+.|.+.+........
T Consensus        75 ~~~l~~d~--~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           75 AIALDFHH--RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             EEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             eEEEEEec--cccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            45677775  24455555555666777777655433223222233467888864 4555666777889999987654333


Q ss_pred             Eee-cCCeEEEEEECCCCCEEEEeeC-C-CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676           98 SFE-HKHIVRACAFSEDTHLLLTGGF-E-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (264)
Q Consensus        98 ~~~-~~~~v~~~~~~~~~~~l~s~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd  174 (264)
                      ... .-...+.++++|.+..|+.+.. . +.|..++++.... .......-.....+++.+.++.+..+-...+.|..+|
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            332 2245688999996666665443 3 6788888764321 1111112234678899888888888877778999999


Q ss_pred             CCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEE
Q 024676          175 ARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       175 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  224 (264)
                      +........+. .......+++..+..|++-...+.|..+|..+++.+..+
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            87543322222 223466777743333333334567888885555443333

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.17  E-value=0.0018  Score=52.82  Aligned_cols=203  Identities=7%  Similarity=-0.079  Sum_probs=121.7

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-eeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeCCCCcEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      ..+|+|++  .+++...+-...+.|..++...+.... .+.........+++.+ .+.+..+-...+.|.+.+.......
T Consensus        37 ~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           37 AAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            44778876  234555555556677777776543211 1211123345688886 4555566667789999998765433


Q ss_pred             EEe-ecCCeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676           97 HSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus        97 ~~~-~~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      ... ........++++|.+..|+.+..  .+.|...+++... ........-.....+++.+.++.+..+-...+.|..+
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~  193 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  193 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence            332 22344688999997666665553  4678878875332 1122212223457889988888888887777899999


Q ss_pred             ECCCCceeEEec-CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEE
Q 024676          174 DARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       174 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  224 (264)
                      |+.......... .......+++..++.|.+-...+.|..+|..+++..+.+
T Consensus       194 d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          194 NLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             ETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             cCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            987543322222 223466777765544444344578888898766544444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.14  E-value=0.0026  Score=53.66  Aligned_cols=225  Identities=7%  Similarity=-0.098  Sum_probs=135.0

Q ss_pred             EEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCC----cEEEEee-cCCeEE
Q 024676           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTG----DEKHSFE-HKHIVR  106 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~----~~~~~~~-~~~~v~  106 (264)
                      +|+.+. ...|+..++........+. ....+.+++|++.+ ....+-...+.|+.+++...    ....... ......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444433 3567777877665443333 34567789999754 44566666788988887652    2222222 234567


Q ss_pred             EEEECCCCCEEE-EeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC-CCeEEEEECCCCceeEEe
Q 024676          107 ACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTL  184 (264)
Q Consensus       107 ~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~  184 (264)
                      .+++++.+..|+ +-...+.|.+.+++.... .............++..|.++.++.+-.. .+.|...++.........
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            889998544444 445568899988864332 22222223346778888777777776533 367888888754433333


Q ss_pred             c-CCCCEEEEEEcCCCcEE-EEe-CCCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          185 E-TKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       185 ~-~~~~v~~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      . .-...+.++++|++..| .+- ....|..+|+............   ..+..++..  .+.++++-...+.|..+|..
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence            2 23568899999876544 342 3468999998654322222221   223344442  46788888888899999977


Q ss_pred             ccee
Q 024676          259 TGEQ  262 (264)
Q Consensus       259 ~g~~  262 (264)
                      +|+.
T Consensus       320 ~G~~  323 (400)
T 3p5b_L          320 TGSD  323 (400)
T ss_dssp             SCCC
T ss_pred             CCCc
Confidence            7754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.14  E-value=0.00073  Score=55.57  Aligned_cols=187  Identities=9%  Similarity=0.146  Sum_probs=108.3

Q ss_pred             cEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCC----CC---EEEEeeC---CCcEEEeeCCCCCCCCeEecc
Q 024676           74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED----TH---LLLTGGF---EKILRIFDLNRPDAPPREVGN  143 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~s~~~---d~~i~~~d~~~~~~~~~~~~~  143 (264)
                      .++++....+-+.++|+ +|+.+..+.. ..++.+..-|.    ++   ++++...   ++.+.+|+++-..........
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            34555556678999999 7887777754 44555554442    22   2333333   578999977421112222211


Q ss_pred             ------CC-CCeEEEEE--ecCCC-eEEEEeeCCCeEEEEECC-------CCceeEEecCCCCEEEEEEcCCC-cEEEEe
Q 024676          144 ------SS-GSIRTVAW--LHSDQ-TILSSCTDSGGVRLWDAR-------SGKIVQTLETKSPVTSAEVSRDG-RYITTA  205 (264)
Q Consensus       144 ------~~-~~i~~~~~--~~~~~-~~~~~~~~d~~v~iwd~~-------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~  205 (264)
                            .. .....+++  .+..+ .++.....++.+..|++.       +.+.++++.....+..+.+.+.. +++++-
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~e  198 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAE  198 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEec
Confidence                  11 34444555  45333 345555666999999882       34567778777788888888764 555666


Q ss_pred             CCCcEEEEECC-----CceeeeEEecC---CCCceeeE--cCCC-CCEEEEecCCCeEEEEEcC-ccee
Q 024676          206 DGSSVKFWDAN-----HFGLVKGYNMP---CNTESASL--EPKL-GNIFIAGGEDMWVHVFDFH-TGEQ  262 (264)
Q Consensus       206 ~~~~i~iwd~~-----~~~~~~~~~~~---~~~~~~~~--~~~~-~~~~~~gs~d~~v~vwd~~-~g~~  262 (264)
                      ++..|..++.+     +...+..+...   ..+.-+.+  .++. +.+|++.-.+....+||.. +.+.
T Consensus       199 Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~  267 (355)
T 3amr_A          199 EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY  267 (355)
T ss_dssp             TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred             ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence            67667777754     34455544322   12233333  3322 2355556578899999986 4443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.11  E-value=0.00055  Score=60.89  Aligned_cols=188  Identities=11%  Similarity=0.036  Sum_probs=115.0

Q ss_pred             cEEEEecC-CCeEEEEeC-CCCcEEEEeecCCe------------EEEEEECCCCCE----EEEeeCCCcEEEeeCCCCC
Q 024676           74 LFSASGSA-DFTAKLWDA-LTGDEKHSFEHKHI------------VRACAFSEDTHL----LLTGGFEKILRIFDLNRPD  135 (264)
Q Consensus        74 ~~l~s~s~-D~~v~iwd~-~~~~~~~~~~~~~~------------v~~~~~~~~~~~----l~s~~~d~~i~~~d~~~~~  135 (264)
                      ..++.++. ++.|.-+|. .+|+.+..+.....            ...+.+.|.+..    ++.++.|+.+..+|..+++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            34455555 788999999 89998887754321            123455443434    7788889999999998887


Q ss_pred             CCCeEeccC-C-C-CeEE-EEEecCCCeEEEEee-----CCCeEEEEECCCCceeEEecCCCCE----------------
Q 024676          136 APPREVGNS-S-G-SIRT-VAWLHSDQTILSSCT-----DSGGVRLWDARSGKIVQTLETKSPV----------------  190 (264)
Q Consensus       136 ~~~~~~~~~-~-~-~i~~-~~~~~~~~~~~~~~~-----~d~~v~iwd~~~~~~~~~~~~~~~v----------------  190 (264)
                      ......... . + .+.+ -...  ++.+++.++     .++.|.-+|.++|+.+..+....+.                
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  220 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             EEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence            655433211 0 0 1110 0111  344555443     2689999999999998776543221                


Q ss_pred             -----------------------EEEEEcCCCcE-EEEeCC----------------CcEEEEECCCceeeeEEecCCC-
Q 024676          191 -----------------------TSAEVSRDGRY-ITTADG----------------SSVKFWDANHFGLVKGYNMPCN-  229 (264)
Q Consensus       191 -----------------------~~~~~s~~~~~-l~~~~~----------------~~i~iwd~~~~~~~~~~~~~~~-  229 (264)
                                             ...++.+...+ ++...+                ..|.-+|.++++.+=.|+...+ 
T Consensus       221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d  300 (599)
T 1w6s_A          221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  300 (599)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCc
Confidence                                   12345455433 333222                3688899999988766765322 


Q ss_pred             ---------CceeeEcCCCC---CEEEEecCCCeEEEEEcCcceee
Q 024676          230 ---------TESASLEPKLG---NIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       230 ---------~~~~~~~~~~~---~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                               +........+|   ..++.++.++.+++.|.++|+.+
T Consensus       301 ~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence                     11111110235   57888999999999999999875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.08  E-value=0.0027  Score=51.66  Aligned_cols=217  Identities=7%  Similarity=-0.098  Sum_probs=131.7

Q ss_pred             CCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCC----CcEEEEee-cCCeEEEEEECCCC
Q 024676           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALT----GDEKHSFE-HKHIVRACAFSEDT  114 (264)
Q Consensus        41 ~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~~  114 (264)
                      ..|+..++.+.+....+.. .....+++|++++ ....+-..++.|..++..+    ......+. .-.....+++++.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            4577888877665444432 3456789999765 4556667778999999876    22222222 11345778888755


Q ss_pred             CEEE-EeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC-CeEEEEECCCCceeEEe-cCCCCEE
Q 024676          115 HLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTL-ETKSPVT  191 (264)
Q Consensus       115 ~~l~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~-~~~~~v~  191 (264)
                      ..|+ +-...+.|.+.+++.... .............++..|.++.++.+.... +.|...++......... ..-...+
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~  167 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  167 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCce
Confidence            5454 445678899999864321 122222234567788877778777776543 68888888643322222 2234578


Q ss_pred             EEEEcCCCcEE-EEe-CCCcEEEEECCCceeeeEE-ec---CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          192 SAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGY-NM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       192 ~~~~s~~~~~l-~~~-~~~~i~iwd~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .++++|++..| .+- ..+.|..+|+.... .+.+ ..   ...+..+++.  .+.++++-...+.|..+|..+|+.
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcc
Confidence            99999876543 443 34689999986432 2222 21   1233444553  377888888889999999777764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.07  E-value=0.0036  Score=52.78  Aligned_cols=206  Identities=13%  Similarity=-0.051  Sum_probs=123.0

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeC
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDA   90 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~   90 (264)
                      ...+.+|+|++  .++....+-...+.|+.++....    .....+.........+++++ .+.+.++-...+.|.+.+.
T Consensus       111 ~~~~~~l~~d~--~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          111 LRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             CSCEEEEEEET--TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cCcceEEeeee--ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence            34456788875  23444445455566766776542    12222232334567888887 4555567677889999998


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      ........+. .-.....++++|.+..|+-+.+  .+.|...+++.... .......-.....+++.+.++.+..+-...
T Consensus       189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence            7665444443 2334788999997666665543  36788888764322 222222224567889888888888877777


Q ss_pred             CeEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEE
Q 024676          168 GGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  224 (264)
                      +.|..+|+...........   ......+++..+..|++-...+.|..+|..+++.+..+
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             TEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            8999999875443222221   23355677754433444444578888887665444333

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.04  E-value=0.0076  Score=55.36  Aligned_cols=220  Identities=6%  Similarity=-0.130  Sum_probs=132.5

Q ss_pred             CCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCC----cEEEEee-cCCeEEEEEECC
Q 024676           39 KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTG----DEKHSFE-HKHIVRACAFSE  112 (264)
Q Consensus        39 ~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~~  112 (264)
                      ....|+..++........+.+ ...+.+++|++. +.+.++-...+.|+.+++...    .....+. .......+++++
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             cccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence            345577777766554433333 345678999874 455566666788988887653    2222222 223456788988


Q ss_pred             CCCEEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC-CeEEEEECCCCceeEEecC-CCC
Q 024676          113 DTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLET-KSP  189 (264)
Q Consensus       113 ~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~-~~~  189 (264)
                      .++.|+.+ ...+.|.+.+++.... .............+++.+..+.++.+-... ..|...++........+.. -..
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~  559 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  559 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence            77555544 5568899999874332 222222334567888888777777775443 6799989875544333332 246


Q ss_pred             EEEEEEcCCCcE-EEEe-CCCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          190 VTSAEVSRDGRY-ITTA-DGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       190 v~~~~~s~~~~~-l~~~-~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .+.|++.+.+.. +.+- ....|...++............   ..+..+++.  .++++++-...+.|...|..+|+.
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcc
Confidence            889999976544 3442 3467888888654332222221   123344443  367888888888898888777754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=0.0079  Score=55.15  Aligned_cols=232  Identities=13%  Similarity=0.078  Sum_probs=136.5

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee---------eCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---------EGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~---------~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      ...|.+|...+   +|. |-.|+.++-+..++..++.+....         ......|.++...+++.+-+. ..++-+.
T Consensus       312 ~~~v~~i~~D~---~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~~~Gl~  386 (781)
T 3v9f_A          312 NASARYIFQDS---FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIG-TDGGGIN  386 (781)
T ss_dssp             SSCEEEEEECS---SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEE-EBSSCEE
T ss_pred             CCeEEEEEEeC---CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEE-eCCCcEE
Confidence            34577777664   555 445666667788887766543211         112357999999888766543 3334477


Q ss_pred             EEeCCCCcEEEEe----ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec---cCCCCeEEEEEecCCCe
Q 024676           87 LWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        87 iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~  159 (264)
                      .||..++......    .....|.++...+++.+.+ |+.++-+..++..+++.  ....   .....+.++...+ ++.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~-~g~  462 (781)
T 3v9f_A          387 VFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDK-NKK  462 (781)
T ss_dssp             EEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECT-TSE
T ss_pred             EEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECC-CCC
Confidence            7886554321110    1235688888888887665 66666788888754422  1111   1234577766544 344


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecC------CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCC----C
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC----N  229 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~----~  229 (264)
                      +.++ .. +.|..+|.++++.......      ...+.++...++|.+.++..++.+..||..+.+ ++.+....    .
T Consensus       463 lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~  539 (781)
T 3v9f_A          463 IWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSN  539 (781)
T ss_dssp             EEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCS
T ss_pred             EEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCC
Confidence            4433 44 6799999988765433221      356899999999998887765567788876654 33443211    1


Q ss_pred             -CceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          230 -TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       230 -~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                       ...+...+ .|.+. .|+.+|.+..||..+++
T Consensus       540 ~i~~i~~d~-~g~lW-i~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          540 TINQIYRSS-KGQMW-LATGEGLVCFPSARNFD  570 (781)
T ss_dssp             CEEEEEECT-TSCEE-EEETTEEEEESCTTTCC
T ss_pred             eeEEEEECC-CCCEE-EEECCCceEEECCCCCc
Confidence             12333333 35544 44447765888876553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.02  E-value=0.0041  Score=51.39  Aligned_cols=219  Identities=7%  Similarity=-0.112  Sum_probs=133.6

Q ss_pred             CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcEEEEeec-CCeEEEEEECCCCCEE
Q 024676           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFSEDTHLL  117 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  117 (264)
                      ...|+..+.........+.+. .....++|++.+ .+..+-...+.|..++...+........ ......+++++.+..|
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             ccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence            345777777655544334433 346789999654 4556666778899999877654333322 2335678888855555


Q ss_pred             -EEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC-CeEEEEECCCCceeEEec-CCCCEEEEE
Q 024676          118 -LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLE-TKSPVTSAE  194 (264)
Q Consensus       118 -~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~-~~~~v~~~~  194 (264)
                       .+-...+.|.+.+++.... .............++..|.++.++.+-... +.|...++.......... .-...+.++
T Consensus       131 y~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  209 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT  209 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEE
T ss_pred             EEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEE
Confidence             4445567899999864332 222222234567788888788877776665 788888887543322222 234578999


Q ss_pred             EcCCCcE-EEEe-CCCcEEEEECCCceeeeEEec-CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          195 VSRDGRY-ITTA-DGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       195 ~s~~~~~-l~~~-~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ++|++.. ..+- ..+.|..+|+........+.. ...+..+++.  .+.++++-...+.|..+|..+|+.
T Consensus       210 ~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          210 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCc
Confidence            9986544 3443 346899998764322211221 1233444552  467888888888898888656653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.02  E-value=0.00016  Score=65.63  Aligned_cols=204  Identities=13%  Similarity=-0.055  Sum_probs=115.1

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC----CceEEeeeCCcCCEEEEEECC-CCcEEEEecCCCeEEEEeCCCC
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~----~~~~~~~~~H~~~V~~v~~~~-~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      +.+|+|++  ..+.+.++-...+.|+.+++..    ......+.........+++.+ .+.+.++-...+.|.+.+....
T Consensus       408 p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          408 VVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             CCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             eEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            44677875  2334444444556788887764    121112211112234677875 3445556566788999998765


Q ss_pred             cEEEEeec-CCeEEEEEECCCCCEEEEeeC-C-CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676           94 DEKHSFEH-KHIVRACAFSEDTHLLLTGGF-E-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus        94 ~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                      .....+.. ......++++|.+..|+.+.. . +.|..+++..... .......-.....+++.+.++.++++-...+.|
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            54333322 234567889986655555443 2 6777777653322 122111122345678888777787777777899


Q ss_pred             EEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEe
Q 024676          171 RLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~  225 (264)
                      ..+|+........+..   ......+++..+..|++....+.|..+|..+++.+..+.
T Consensus       565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            9999975433222221   122345566555334444445789999988777665554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.96  E-value=0.0029  Score=53.99  Aligned_cols=195  Identities=11%  Similarity=0.055  Sum_probs=110.6

Q ss_pred             EEEEEECCC---CcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC---Cc-EEEeeCCCCCC
Q 024676           64 VWSCCLDAN---ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KI-LRIFDLNRPDA  136 (264)
Q Consensus        64 V~~v~~~~~---~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~-i~~~d~~~~~~  136 (264)
                      -..++++++   +.+.++-.. +.|+.+|..++..............++++++++++++-...   .. +...+......
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            467899984   554444333 88999998877665555445568899999999955443311   11 22233221111


Q ss_pred             CCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe-c--CCCCEEEEEEcCCCcE-EEEe-CCCcEE
Q 024676          137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E--TKSPVTSAEVSRDGRY-ITTA-DGSSVK  211 (264)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~--~~~~v~~~~~s~~~~~-l~~~-~~~~i~  211 (264)
                      ...... .......+++.+.++.+.++...++.|+.+|..+++....+ .  .......++++|++++ +++. ....|+
T Consensus       220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence            001111 11223445666646667766666789999999877652222 1  2222456999999974 4443 356888


Q ss_pred             EEECC--Ccee--eeEEecC----------------CCCceeeEc--------CCCCCEEEEecCCCeEEEEEcCcce
Q 024676          212 FWDAN--HFGL--VKGYNMP----------------CNTESASLE--------PKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       212 iwd~~--~~~~--~~~~~~~----------------~~~~~~~~~--------~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .++..  +...  ...+...                ..+..+++.        ...+.++++=..+..|+.++. +|+
T Consensus       299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            87754  2211  1112110                012234441        234778888888888998875 453

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.0014  Score=55.97  Aligned_cols=151  Identities=10%  Similarity=0.042  Sum_probs=93.1

Q ss_pred             EEEEEECC-CCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC-C----cEEEeeCCCCCCC
Q 024676           64 VWSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-K----ILRIFDLNRPDAP  137 (264)
Q Consensus        64 V~~v~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~----~i~~~d~~~~~~~  137 (264)
                      ...++++| ++..|..+...+.|+.+|..++..............++++++++.|+.+... +    .+.+++.. +...
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Ccee
Confidence            36788997 3444444443478999998877654444445568899999999966665541 2    23334432 2222


Q ss_pred             C-eEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE--EecCCCCEEEEEEcCCCcE-EEEe-CCCcEEE
Q 024676          138 P-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRY-ITTA-DGSSVKF  212 (264)
Q Consensus       138 ~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~-l~~~-~~~~i~i  212 (264)
                      . ..+.. ......+++.+.++.++++...++.|..+|..++....  ........+.++++|+|++ +++. ....|..
T Consensus       218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            1 12211 22345566777567777776677899999998776422  2222334678999999984 4443 3568888


Q ss_pred             EECC
Q 024676          213 WDAN  216 (264)
Q Consensus       213 wd~~  216 (264)
                      ++..
T Consensus       297 ~~~d  300 (430)
T 3tc9_A          297 SDYD  300 (430)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            7654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.89  E-value=0.015  Score=53.41  Aligned_cols=232  Identities=9%  Similarity=0.065  Sum_probs=132.3

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-------CCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-------~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..|.+|...+   +|++.+. +.. -+.+++..++++.....       .....|+++...+++.+.+....+| +.++|
T Consensus       211 ~~i~~i~~d~---~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~G-l~~~~  284 (781)
T 3v9f_A          211 NDVRCIYKDT---NGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNG-IMILD  284 (781)
T ss_dssp             SSEEEEEECT---TCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSC-EEEEE
T ss_pred             CceeEEEEcC---CCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCC-eEEEC
Confidence            3466776653   5655544 444 57788887766432211       1245799999988887655433244 77788


Q ss_pred             CCCCcEEEEee---------------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--------ccCCC
Q 024676           90 ALTGDEKHSFE---------------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--------GNSSG  146 (264)
Q Consensus        90 ~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--------~~~~~  146 (264)
                      ..++.......               ....|.++..++++.+.+ |+.++-+..++...........        .-...
T Consensus       285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  363 (781)
T 3v9f_A          285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK  363 (781)
T ss_dssp             TTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred             CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-EecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence            76654221111               234689999999887554 6667778888875433211100        01234


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe----cCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeee
Q 024676          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK  222 (264)
Q Consensus       147 ~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~  222 (264)
                      .+.++...++ +.+.+ ++.++.|..||..+++...-.    .....|.++...++|.+.++..++.+..+|.++++. +
T Consensus       364 ~v~~i~~d~~-g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~  440 (781)
T 3v9f_A          364 VVSSVCDDGQ-GKLWI-GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF-Q  440 (781)
T ss_dssp             CEEEEEECTT-SCEEE-EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE-E
T ss_pred             ceEEEEEcCC-CCEEE-EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE-E
Confidence            5777765443 33433 344567999998765432211    123568899999999888877667788899876543 3


Q ss_pred             EEec---CC-CCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          223 GYNM---PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       223 ~~~~---~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      .+..   .. ...++...+ .+. +..|.. +-+..||..+++
T Consensus       441 ~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLASKK  480 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSSSS
T ss_pred             EeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCCCe
Confidence            3322   11 122333333 344 455555 458888876653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.84  E-value=0.00057  Score=61.53  Aligned_cols=193  Identities=12%  Similarity=0.111  Sum_probs=101.1

Q ss_pred             EEEECC-CCcEEEEecCCC-----------eEEEEeCCCCcE--EEEee--cCCeEEEEEECCCCCEEEEeeC-CCcEEE
Q 024676           66 SCCLDA-NALFSASGSADF-----------TAKLWDALTGDE--KHSFE--HKHIVRACAFSEDTHLLLTGGF-EKILRI  128 (264)
Q Consensus        66 ~v~~~~-~~~~l~s~s~D~-----------~v~iwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~l~s~~~-d~~i~~  128 (264)
                      .+++.+ +++.++.|+.+.           .+.+||..++.-  +....  +......+++.+++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455666 788888776543           588899887752  22221  1222234567789999999885 467999


Q ss_pred             eeCCCCCCCCeEecc--CCCCeEEEEEecCCCeEEEEeeCC-----CeEEEEECCCCceeEEec-----CCCCEEEEEEc
Q 024676          129 FDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKIVQTLE-----TKSPVTSAEVS  196 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~s  196 (264)
                      ||..+.+.  .....  ..-.-..++..+++..+++++..+     ..+.+||..+++-...-.     ....-....+.
T Consensus       270 yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          270 YDSSSDSW--IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEGGGTEE--EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             ecCcCCce--eECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            99865432  12111  111112334455555555554233     469999998876433200     00000001122


Q ss_pred             CCCcE-EEEe---------CCCcEEEEECCCceeeeEEecC-C--------CCceee-EcCCCCCEEEEecCCC------
Q 024676          197 RDGRY-ITTA---------DGSSVKFWDANHFGLVKGYNMP-C--------NTESAS-LEPKLGNIFIAGGEDM------  250 (264)
Q Consensus       197 ~~~~~-l~~~---------~~~~i~iwd~~~~~~~~~~~~~-~--------~~~~~~-~~~~~~~~~~~gs~d~------  250 (264)
                      .+++. +.++         ....+..||..+..-....... .        ...... +....+++++.||.++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            33332 3332         2346788888765433222111 0        011222 2223578899998643      


Q ss_pred             -----eEEEEEcCcc
Q 024676          251 -----WVHVFDFHTG  260 (264)
Q Consensus       251 -----~v~vwd~~~g  260 (264)
                           .+.+||..+.
T Consensus       428 ~~~~~~v~~yd~~~~  442 (656)
T 1k3i_A          428 TTNAHIITLGEPGTS  442 (656)
T ss_dssp             CCCEEEEECCSTTSC
T ss_pred             CCcceEEEcCCCCCC
Confidence                 6778876654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.82  E-value=0.0041  Score=49.92  Aligned_cols=223  Identities=12%  Similarity=0.096  Sum_probs=107.7

Q ss_pred             CCeEEEEEe-CC-----CCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC-----CeEEEEeCCCCc--
Q 024676           30 DGFFLVSAS-KD-----SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGD--   94 (264)
Q Consensus        30 ~g~~l~t~s-~d-----~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iwd~~~~~--   94 (264)
                      ++..++.|+ .+     ..+.++|..++++...  +...+.. .+++ ..++..++.|+.+     ..+.+||..+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            455666666 33     3577889988876432  2111111 1112 2246666666654     368889987765  


Q ss_pred             -EEEEee--cCCe-EEEEEECCCCCEEEEeeCC-----CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           95 -EKHSFE--HKHI-VRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        95 -~~~~~~--~~~~-v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                       -.....  .... -..+.+  ++++++.|+.+     ..+.+||..+.+.......+..-.-..++..  ++.+++.++
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence             222211  1111 111222  56677777653     3477888765442211111111111122222  334444443


Q ss_pred             CC-----CeEEEEECCCCceeEEecCCCC--EEEEEEcCCCcEEEE-eCC-----CcEEEEECCCceeeeEEecCCCCc-
Q 024676          166 DS-----GGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYITT-ADG-----SSVKFWDANHFGLVKGYNMPCNTE-  231 (264)
Q Consensus       166 ~d-----~~v~iwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~-~~~-----~~i~iwd~~~~~~~~~~~~~~~~~-  231 (264)
                      .+     ..+.+||+.+.+-...-....+  -.++... ++++++. +.+     ..+.+||+.+.+-...-..+.... 
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  246 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY  246 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence            22     4588999988764332111111  1122222 4555444 332     468899998654222112222111 


Q ss_pred             -eeeEcCCCCCEEEEecCC-----CeEEEEEcCcce
Q 024676          232 -SASLEPKLGNIFIAGGED-----MWVHVFDFHTGE  261 (264)
Q Consensus       232 -~~~~~~~~~~~~~~gs~d-----~~v~vwd~~~g~  261 (264)
                       .....  .+++++.||.+     ..+.+||.++.+
T Consensus       247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             12222  47788888876     467888887643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.81  E-value=0.02  Score=52.61  Aligned_cols=202  Identities=13%  Similarity=-0.052  Sum_probs=119.0

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----ceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCC
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDAL   91 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~   91 (264)
                      ..+.+|+|.+  .+++..++-...+.|+.+++...    .....+.........|++++.+ .+.++-...+.|.+.++.
T Consensus       424 ~~~~gl~~d~--~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          424 RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceEEEeecc--cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            3455777775  23455555555566766776542    2222233233445678888766 445677778899999987


Q ss_pred             CCcEEEEee-cCCeEEEEEECCCCCEEEEeeCC--CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        92 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      .......+. .-.....++++|....|+.+.+.  ..|...+++.... .......-.....+++.+.++.++++-....
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~  580 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLH  580 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence            665444333 23457899999986666665432  6788888764322 2222222245678888877788877766667


Q ss_pred             eEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceee
Q 024676          169 GVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV  221 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~  221 (264)
                      .|...|+........+..   -.....+++..+..|++-...+.|...|..+++.+
T Consensus       581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             cEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcce
Confidence            899999876543333221   12345677654423333334567877776655443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.80  E-value=0.0094  Score=48.56  Aligned_cols=218  Identities=8%  Similarity=-0.104  Sum_probs=129.3

Q ss_pred             CCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCCcEE-EEe-ecCCeEEEEEECCCC
Q 024676           40 DSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEK-HSF-EHKHIVRACAFSEDT  114 (264)
Q Consensus        40 d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~-~~~-~~~~~v~~~~~~~~~  114 (264)
                      ...|+..++....  ....+.+ .....+++|++. +.+..+-...+.|..++...+... ... ..-.....+++++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            3457777776553  2222222 124567889875 455567677788999998765321 111 122345678888755


Q ss_pred             CEE-EEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee-CCCeEEEEECCCCceeEEe-cCCCCEE
Q 024676          115 HLL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTL-ETKSPVT  191 (264)
Q Consensus       115 ~~l-~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~-~~~~~v~  191 (264)
                      ..| .+-...+.|.+++++.... .............++..|.++.++.+.. ..+.|...++......... ..-...+
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pn  169 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN  169 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCcc
Confidence            444 4445567899999864322 2222223345677887777777776653 2478888888743322222 2234578


Q ss_pred             EEEEcCCCc-EEEEe-CCCcEEEEECCCceeeeEEec--CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          192 SAEVSRDGR-YITTA-DGSSVKFWDANHFGLVKGYNM--PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       192 ~~~~s~~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .++++|++. +..+- ..+.|..+|+..... +.+..  ...+..+++.  .+.++++-...+.|..++..+|+.
T Consensus       170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCc
Confidence            999998654 44443 356899999864322 22211  1233344443  367788888889999999877764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.79  E-value=0.0099  Score=48.54  Aligned_cols=225  Identities=7%  Similarity=-0.011  Sum_probs=117.7

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-eEEeee--CCcCCEEEEEECCCCcEEEEecCCCeE-EEEeCC
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFE--GHKGAVWSCCLDANALFSASGSADFTA-KLWDAL   91 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v-~iwd~~   91 (264)
                      ...+.+|.|.|    +..++. +.++.+.. ....|+ +.....  .+.+.+..+.+.+++..++.+. ++.+ +-.|- 
T Consensus        79 ~~~~~~i~~~~----~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~Dg-  150 (327)
T 2xbg_A           79 DYRFNSVSFQG----NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDS-  150 (327)
T ss_dssp             CCEEEEEEEET----TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESST-
T ss_pred             CccEEEEEecC----CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCC-
Confidence            34677888874    344444 44554332 333343 332221  2345577788777777666654 4433 33332 


Q ss_pred             CCcEEEE--eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-ccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           92 TGDEKHS--FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        92 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                       +.....  ......+..+.+.|++.+++.+......+..|-. + ...... ......+..+.+.+++. +++. ..+|
T Consensus       151 -G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G-~tW~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~G  225 (327)
T 2xbg_A          151 -GKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-Q-TAWEPHNRTTSRRLHNMGFTPDGR-LWMI-VNGG  225 (327)
T ss_dssp             -TSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-C-SSCEEEECCSSSCEEEEEECTTSC-EEEE-ETTT
T ss_pred             -CCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-C-CceeECCCCCCCccceeEECCCCC-EEEE-eCCc
Confidence             332222  2234568889999988877665444444444421 1 122222 22344667777766554 4443 3458


Q ss_pred             eEEEEECCCCceeEEec-----CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEe----cCCCCceeeEcCCC
Q 024676          169 GVRLWDARSGKIVQTLE-----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN----MPCNTESASLEPKL  239 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~  239 (264)
                      .+.+.+...++.-..+.     ....+..+.+.+++.+++++.++.+ ++....++.-....    .+.....+.+.+  
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--  302 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS--  302 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE--
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC--
Confidence            88776433233211111     1234788889988888887777666 33333332222222    122334454543  


Q ss_pred             CCEEEEecCCCeEEEEE
Q 024676          240 GNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       240 ~~~~~~gs~d~~v~vwd  256 (264)
                      +..+++++.+|.|.-++
T Consensus       303 ~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          303 PDQGFILGQKGILLRYV  319 (327)
T ss_dssp             TTEEEEECSTTEEEEEC
T ss_pred             CCceEEEcCCceEEEEc
Confidence            34466777889877665

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.015  Score=50.34  Aligned_cols=151  Identities=11%  Similarity=0.023  Sum_probs=92.5

Q ss_pred             EEEEEECCC-Cc-EEEEecCCCeEEEEeCCCCcEEEEeecC----CeEEEEEE-------CCCCCEEEEeeCCC------
Q 024676           64 VWSCCLDAN-AL-FSASGSADFTAKLWDALTGDEKHSFEHK----HIVRACAF-------SEDTHLLLTGGFEK------  124 (264)
Q Consensus        64 V~~v~~~~~-~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~v~~~~~-------~~~~~~l~s~~~d~------  124 (264)
                      -..|+|+|. +. ++++-...+.|++.|..++.........    .....++|       +++++.|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            467899983 44 4444444467888898887655444321    24788999       99999777665543      


Q ss_pred             -cEEEeeCCC-CCCCC----eEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-------CCce-----------
Q 024676          125 -ILRIFDLNR-PDAPP----REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-------SGKI-----------  180 (264)
Q Consensus       125 -~i~~~d~~~-~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~-------~~~~-----------  180 (264)
                       .+.+++... +....    ..... -.....++..+.++.++++...++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             255565332 12221    12211 12234556677678888887788899999987       5543           


Q ss_pred             ---eEEecCCCCEEEEEEcCCCcE-EEE-eCCCcEEEEEC
Q 024676          181 ---VQTLETKSPVTSAEVSRDGRY-ITT-ADGSSVKFWDA  215 (264)
Q Consensus       181 ---~~~~~~~~~v~~~~~s~~~~~-l~~-~~~~~i~iwd~  215 (264)
                         +...........++++|+|.+ +++ .....|+.++.
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence               122233344678999999984 344 33567887554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.69  E-value=0.026  Score=50.50  Aligned_cols=198  Identities=6%  Similarity=-0.103  Sum_probs=119.8

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCC-cEEEEecCCCeEEEEeCCCCcE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE   95 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~-~~l~s~s~D~~v~iwd~~~~~~   95 (264)
                      ....+|+|++  .+++...+-..++.|+.++.........+..-......+++++.+ .+..+-...+.|.+.+......
T Consensus        37 ~~~~~l~~d~--~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           37 KEASALDFDV--TDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred             CceEEEEEEC--CCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence            3455888886  245555565666777777776443322232222345678887654 4446666678899999866543


Q ss_pred             EEEe-ecCCeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676           96 KHSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus        96 ~~~~-~~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      .... ..-...+.++++|....|+-+.+  ...|...+++....  ..+...-.....+++.+.++.+..+-...+.|..
T Consensus       115 ~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~  192 (628)
T 4a0p_A          115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIES  192 (628)
T ss_dssp             EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--EEEECCCCCcceEEEccccCEEEEEECCCCEEEE
Confidence            3333 22334689999996666665543  45677777764432  2222333456788888877888888777789999


Q ss_pred             EECCCCceeEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCce
Q 024676          173 WDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG  219 (264)
Q Consensus       173 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~  219 (264)
                      .|+.................+++..+ .++.+. ..+.|...|..+++
T Consensus       193 ~d~dG~~~~v~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          193 SNMLGLNREVIADDLPHPFGLTQYQD-YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EETTSCSCEEEEECCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCC
T ss_pred             EcCCCCceEEeeccCCCceEEEEECC-EEEEecCCCCEEEEEECCCCC
Confidence            99976543211122233557777654 444443 35678888865543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.69  E-value=0.00051  Score=62.37  Aligned_cols=220  Identities=7%  Similarity=-0.103  Sum_probs=121.9

Q ss_pred             CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCC----CcEEEEee-cCCeEEEEEECCC
Q 024676           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALT----GDEKHSFE-HKHIVRACAFSED  113 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~  113 (264)
                      .+.|+..+..+.+....+..- ..+.+++|++.+..| ++-...+.|+.+++..    ......+. .......+++++.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            356777777766554443332 234578898765444 5555667898888765    22111111 1122356778764


Q ss_pred             C-CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC-CeEEEEECCCCceeEEec-CCCCE
Q 024676          114 T-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLE-TKSPV  190 (264)
Q Consensus       114 ~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~-~~~~v  190 (264)
                      + +++++-...+.|.+++++.... .............+++.|.++.++.+.... +.|..+++.......... .-...
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence            4 4444445567899998764321 112111122345566666666666654333 678887776433222221 22346


Q ss_pred             EEEEEcCCC-cEEEEe-CCCcEEEEECCCceeeeEEec---CCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          191 TSAEVSRDG-RYITTA-DGSSVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       191 ~~~~~s~~~-~~l~~~-~~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +.++++|++ +++.+- ..+.|..+|+........+..   ...+..+++..  +.++++....+.|..+|..+|+.+
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~  618 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDV  618 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEE
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCce
Confidence            789999875 444443 356899999864322211111   12333444443  578888888899999998777653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.67  E-value=0.022  Score=50.88  Aligned_cols=197  Identities=7%  Similarity=-0.096  Sum_probs=109.9

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce-EEeeeCCcCCEEEEEECCC-CcEEEEecCCCeEEEEeCCCCcEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEK   96 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~-~~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~   96 (264)
                      ..+|+|++  .++....+=...+.|..++...... ...+..-......+++++. +.+.++-...+.|.+.+.......
T Consensus        42 ~~~ld~~~--~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           42 AAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             EEEEEEET--TTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             eEEEEEEe--CCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            45677775  2344444444445566666654321 2223222245788999985 445566677889999998765433


Q ss_pred             EEe-ecCCeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676           97 HSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus        97 ~~~-~~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      ... ..-.....++++|.+..|+-+.+  ...|...+++... ........-.....+++.+.++.+..+-...+.|...
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            333 22334568899997666665554  3556666665322 2222222234567788888778887777777889999


Q ss_pred             ECCCCceeEEec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCce
Q 024676          174 DARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG  219 (264)
Q Consensus       174 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~  219 (264)
                      |+.......... .......+++.++ .++.+. ..+.|...|..+++
T Consensus       199 ~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          199 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             SSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             cCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            987644322222 1112345667666 333333 34678888876543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.64  E-value=0.018  Score=47.04  Aligned_cols=189  Identities=12%  Similarity=0.056  Sum_probs=105.9

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC-ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCC-CCc
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGD   94 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~-~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~-~~~   94 (264)
                      ..+..|.+.+   ++..++.+ .++.+. .....| .+.....++...+..+++.+++.+++.+...+..+-+|-. ..-
T Consensus       122 ~~~~~i~~~~---~~~~~~~~-~~g~v~-~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          122 GSPRLIKALG---NGSAEMIT-NVGAIY-RTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             SCEEEEEEEE---TTEEEEEE-TTCCEE-EESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC
T ss_pred             CCeEEEEEEC---CCCEEEEe-CCccEE-EEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce
Confidence            3456676653   45655554 455442 233334 3555555666788999999999888777665555555531 111


Q ss_pred             EEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCC-CCCeEec--cCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 024676           95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (264)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~d~~v~  171 (264)
                      ..........+..+.+.+++.+++ ++.++.++..+.+.++ .......  .....+..+.+.++ ..+++++. ++.| 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~-~~~~~~g~-~g~i-  272 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP-NEVWLAGG-AGAL-  272 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS-SCEEEEES-TTCE-
T ss_pred             eECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC-CEEEEEeC-CCeE-
Confidence            222223445678888899887654 5566777666322111 0000111  11224677777664 44555544 4666 


Q ss_pred             EEECCCCceeEEec----CCCCEEEEEEcCCCcEEEEeCCCcEEEEE
Q 024676          172 LWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (264)
Q Consensus       172 iwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~i~iwd  214 (264)
                      .+....|+.-..+.    ....+..+.+.+++++++.+.++.|.-++
T Consensus       273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            45555554333232    12457778887777888888888766554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.64  E-value=0.013  Score=47.85  Aligned_cols=153  Identities=10%  Similarity=0.070  Sum_probs=102.2

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEE-eeeC----Cc--CCEEEEEE---CCCCcEEEEec----------
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEG----HK--GAVWSCCL---DANALFSASGS----------   80 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~-~~~~----H~--~~V~~v~~---~~~~~~l~s~s----------   80 (264)
                      +++|++  .+|.++++.-..++|..|+...+.... .+.+    ..  ..+..+.|   .+++.+++...          
T Consensus        17 ~~~wd~--~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           17 DTIYDR--TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CEEEET--TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CccCcC--CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            678886  356666666689999999998664332 3332    11  13578999   68887776433          


Q ss_pred             ---CCCeEEEEeCC---CCcEEEEeec-------------C-CeEEEEEECCCCCEEEEeeCC-CcEEEeeCCCCCCCCe
Q 024676           81 ---ADFTAKLWDAL---TGDEKHSFEH-------------K-HIVRACAFSEDTHLLLTGGFE-KILRIFDLNRPDAPPR  139 (264)
Q Consensus        81 ---~D~~v~iwd~~---~~~~~~~~~~-------------~-~~v~~~~~~~~~~~l~s~~~d-~~i~~~d~~~~~~~~~  139 (264)
                         .+..|..+|+.   +++.+.....             . ...+.++.+++++..++++.- +.|...+.+...  ..
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~--~~  172 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT--VS  172 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC--EE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE--Ee
Confidence               26789999998   6765544331             1 247899999999999988887 777666654321  11


Q ss_pred             Eec------cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676          140 EVG------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (264)
Q Consensus       140 ~~~------~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~  178 (264)
                      ...      ......+.+++.|++..+++..+ .+.+..+|+++.
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p  216 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP  216 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence            111      11122557888988877777766 799999998854

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.56  E-value=0.014  Score=46.88  Aligned_cols=221  Identities=8%  Similarity=0.072  Sum_probs=106.7

Q ss_pred             CeEEEEEeCC--CCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC----CeEEEEeCCCCcEEEEeecC
Q 024676           31 GFFLVSASKD--SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALTGDEKHSFEHK  102 (264)
Q Consensus        31 g~~l~t~s~d--~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~  102 (264)
                      +..++.|+.+  ..+.+||..++++...  +...+..-.++.  .++..++.|+.+    ..+.++|..+..-.......
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3455566553  4678889988876532  211111111122  256666677655    56788888776422221111


Q ss_pred             Ce---EEEEEECCCCCEEEEeeCC------CcEEEeeCCCCCCCCeEeccCC--CCeEEEEEecCCCeEEEEeeC-----
Q 024676          103 HI---VRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVGNSS--GSIRTVAWLHSDQTILSSCTD-----  166 (264)
Q Consensus       103 ~~---v~~~~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~-----  166 (264)
                      .+   -..+.+  ++++++.|+.+      ..+.+||..+.+.  .......  -.-..++.. ++..+++++..     
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW--HTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVS  164 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTT
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce--EeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCc
Confidence            11   111122  56777777765      4577888765432  2221111  111122222 33333443321     


Q ss_pred             ---CCeEEEEECCCCceeEEecCCC--CEEEEEEcCCCcEEEE-eCC-----CcEEEEECCCce--eeeEEecCCCCcee
Q 024676          167 ---SGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYITT-ADG-----SSVKFWDANHFG--LVKGYNMPCNTESA  233 (264)
Q Consensus       167 ---d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~-~~~-----~~i~iwd~~~~~--~~~~~~~~~~~~~~  233 (264)
                         -..+.+||+.+.+-...-....  .-.++... ++++++. +.+     ..+.+||+.+.+  .+.....+......
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC  243 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence               2458899998876432211111  11122222 5555444 321     368889987653  22211111111112


Q ss_pred             eEcCCCCCEEEEecCC-----CeEEEEEcCcce
Q 024676          234 SLEPKLGNIFIAGGED-----MWVHVFDFHTGE  261 (264)
Q Consensus       234 ~~~~~~~~~~~~gs~d-----~~v~vwd~~~g~  261 (264)
                      ...  .+++++.||.+     ..+.+||..+.+
T Consensus       244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            222  47788888854     568888887653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.51  E-value=0.047  Score=48.81  Aligned_cols=220  Identities=8%  Similarity=-0.105  Sum_probs=135.9

Q ss_pred             CCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCc-EEEEecCCCeEEEEeCCCCcEEEEeecC-CeEEEEEECCCCC
Q 024676           39 KDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTH  115 (264)
Q Consensus        39 ~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~  115 (264)
                      ....|+..++++......+. ..-..+.+++|++.+. ...+-..++.|+.+++........+... .....+++++.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            44567778887654332221 1224567899998654 4566677889999988765443333322 3456788887665


Q ss_pred             EEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee-CCCeEEEEECCCCceeEEecCCCCEEEE
Q 024676          116 LLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTLETKSPVTSA  193 (264)
Q Consensus       116 ~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~  193 (264)
                      .|+.+ ...+.|.+.+++.... .......-.....++..|..+.++.+-. ....|...++...........-...+.+
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl  171 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL  171 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred             EEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence            55544 4567888888864332 1222122335678888877777777653 2467888888765443333444568899


Q ss_pred             EEcCCCcEE-EE-eCCCcEEEEECCCceeeeEEe-cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          194 EVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       194 ~~s~~~~~l-~~-~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ++++++..| .+ ...+.|...|+..... +.+. ....+..++++.  +.++++-...+.|...|..+|+.
T Consensus       172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          172 TIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCc
Confidence            999976543 44 3356899999865432 2222 122344455543  67888888889999999777753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.49  E-value=0.016  Score=46.40  Aligned_cols=222  Identities=14%  Similarity=0.165  Sum_probs=104.7

Q ss_pred             CCeEEEEEeCC----CCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC-----CeEEEEeCCCCcEEEE
Q 024676           30 DGFFLVSASKD----SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGDEKHS   98 (264)
Q Consensus        30 ~g~~l~t~s~d----~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~   98 (264)
                      ++..++.|+.+    ..+..+|..++++...  +......-..+.+  ++..++.|+.+     ..+.+||..+..=...
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            34555666643    3467788888876432  2111111111222  56666667654     3577888876642211


Q ss_pred             ee--cCC-eEEEEEECCCCCEEEEeeCCC-----cEEEeeCCCCCCCCeEeccCCC--CeEEEEEecCCCeEEEEeeC--
Q 024676           99 FE--HKH-IVRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPDAPPREVGNSSG--SIRTVAWLHSDQTILSSCTD--  166 (264)
Q Consensus        99 ~~--~~~-~v~~~~~~~~~~~l~s~~~d~-----~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~--  166 (264)
                      ..  ... .-..+.  .++++++.|+.++     .+.+||+.+.+.  ........  .-..++.. ++..+++++.+  
T Consensus        93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~  167 (302)
T 2xn4_A           93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEW--FHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVA  167 (302)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEE--EEECCCSSCCBSCEEEEE-TTEEEEECCEETT
T ss_pred             CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeE--eecCCCCCcccCceEEEE-CCEEEEEeCCCCC
Confidence            11  111 111122  2566777777553     366778765432  22211111  11122222 33333433321  


Q ss_pred             ----CCeEEEEECCCCceeEEe--cCCCCEEEEEEcCCCcEEEE-eCC-----CcEEEEECCCceeeeEEecCCCCc--e
Q 024676          167 ----SGGVRLWDARSGKIVQTL--ETKSPVTSAEVSRDGRYITT-ADG-----SSVKFWDANHFGLVKGYNMPCNTE--S  232 (264)
Q Consensus       167 ----d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~-~~~-----~~i~iwd~~~~~~~~~~~~~~~~~--~  232 (264)
                          -..+.+||+.+.+-...-  .....-.+++.. ++++++. +.+     ..+.+||..+.+=...-..+....  .
T Consensus       168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~  246 (302)
T 2xn4_A          168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG  246 (302)
T ss_dssp             TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence                235889999887643321  111111122222 4555444 332     368899987653221111221111  1


Q ss_pred             eeEcCCCCCEEEEecCCC-----eEEEEEcCcce
Q 024676          233 ASLEPKLGNIFIAGGEDM-----WVHVFDFHTGE  261 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~-----~v~vwd~~~g~  261 (264)
                      ....  .+++++.||.++     .+.+||..+.+
T Consensus       247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            2222  477888888764     48889887653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.043  Score=47.44  Aligned_cols=237  Identities=6%  Similarity=-0.044  Sum_probs=129.7

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC---CcCCEEEEEE-------CCCCcEEEEecCCC-----
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG---HKGAVWSCCL-------DANALFSASGSADF-----   83 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~---H~~~V~~v~~-------~~~~~~l~s~s~D~-----   83 (264)
                      ...|+|+|.. .+++.++-...+.+++.|..++.+...+..   .....+.++|       ++++.+|+.+...+     
T Consensus       141 p~~la~dp~~-~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLN-KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTE-EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCC-CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4578888621 234444444345678888887765433322   2234788999       99998555444332     


Q ss_pred             --eEEEEeCCC-CcEE-----EEeecCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCC-------CCCC------C----
Q 024676           84 --TAKLWDALT-GDEK-----HSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLN-------RPDA------P----  137 (264)
Q Consensus        84 --~v~iwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~-------~~~~------~----  137 (264)
                        .|.+.+... +...     ..+..-.....++.+|++..|+ +-..++.|..+|+.       ++..      .    
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              355665333 1111     1221111234667899554555 45566789999986       4443      0    


Q ss_pred             CeEe--ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC--CCCcee--EEecC----------------CCCEE-EEE
Q 024676          138 PREV--GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA--RSGKIV--QTLET----------------KSPVT-SAE  194 (264)
Q Consensus       138 ~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~--~~~~~~--~~~~~----------------~~~v~-~~~  194 (264)
                      ...+  .........+++.|++..++++-.....|+.+|.  .++...  ..+-.                -.... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            1111  1122345788999888766666666688998665  333210  11100                01233 455


Q ss_pred             Ec-------CCCcEEEEe-CCCcEEEEECCCceeeeEEecCC-------------------------CCceeeEcCCCCC
Q 024676          195 VS-------RDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-------------------------NTESASLEPKLGN  241 (264)
Q Consensus       195 ~s-------~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~  241 (264)
                      ..       +++.++++- ....|+.++. ++ .+.++....                         .+..+++.+..+.
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~  457 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM  457 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence            54       556666554 3578999984 44 344443210                         1123344443367


Q ss_pred             EEEEecCCCeEEEEEcC
Q 024676          242 IFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~  258 (264)
                      ++++=..+..||.+++.
T Consensus       458 lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          458 FYVHDQVGHTIRTISME  474 (496)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEECC
Confidence            77777778888888764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.47  E-value=0.0087  Score=48.25  Aligned_cols=222  Identities=15%  Similarity=0.158  Sum_probs=104.4

Q ss_pred             CCCeEEEEEeCC----CCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecC----C-----CeEEEEeCCCC
Q 024676           29 PDGFFLVSASKD----SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSA----D-----FTAKLWDALTG   93 (264)
Q Consensus        29 ~~g~~l~t~s~d----~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~----D-----~~v~iwd~~~~   93 (264)
                      -++..++.|+.+    ..+.++|..++++...  +..-+.. .+++.. ++..++.|+.    +     ..+.++|..+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            355666666632    3577889988876532  1111111 112222 4566666665    2     35777887765


Q ss_pred             cEEEEee--cCC-eEEEEEECCCCCEEEEeeCC-----CcEEEeeCCCCCCCCeEecc--CCCCeEEEEEecCCCeEEEE
Q 024676           94 DEKHSFE--HKH-IVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        94 ~~~~~~~--~~~-~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~  163 (264)
                      .-.....  ... .-..+.+  ++++++.|+.+     ..+..||..+.+.  .....  ..-.-.+++..  ++.+++.
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~iyv~  174 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW--HLVAPMLTRRIGVGVAVL--NRLLYAV  174 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE--eECCCCCccccceEEEEE--CCEEEEE
Confidence            4211111  110 1111222  56677776643     3467788765432  11111  11111122222  3344444


Q ss_pred             eeCC-----CeEEEEECCCCceeEE--ecCCCCEEEEEEcCCCcEEEE-eCC-----CcEEEEECCCceeeeEEecCCCC
Q 024676          164 CTDS-----GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYITT-ADG-----SSVKFWDANHFGLVKGYNMPCNT  230 (264)
Q Consensus       164 ~~~d-----~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~-~~~-----~~i~iwd~~~~~~~~~~~~~~~~  230 (264)
                      ++.+     ..+.+||+.+.+-...  +.....-.+++.. ++++++. +.+     ..+.+||+.+.+=...-..+...
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  253 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR  253 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence            4322     4588999988754321  1111111122222 5555444 332     46889998765322111222211


Q ss_pred             c--eeeEcCCCCCEEEEecCC-----CeEEEEEcCcce
Q 024676          231 E--SASLEPKLGNIFIAGGED-----MWVHVFDFHTGE  261 (264)
Q Consensus       231 ~--~~~~~~~~~~~~~~gs~d-----~~v~vwd~~~g~  261 (264)
                      .  .....  .+++++.||.+     ..+.+||..+.+
T Consensus       254 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          254 SALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1  22222  47788888854     457888877653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.43  E-value=0.028  Score=44.22  Aligned_cols=200  Identities=11%  Similarity=0.157  Sum_probs=123.8

Q ss_pred             eeeCCcCCEEEEEECCCCc-EEEEecCCCeEEEEeCCCCcEEEEeecC--CeEEEEEECCCCCEEEEeeCCCcEEEeeCC
Q 024676           56 TFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (264)
Q Consensus        56 ~~~~H~~~V~~v~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~  132 (264)
                      .+.|=.+.+..+++.|++. +.+....++.|...|.. ++.+..+...  .-...+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4445556789999998765 44556668888888987 7777776543  356788888888776665456778888775


Q ss_pred             CCCCC--CeEe------ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC---CCceeEEec--------CCCCEEEE
Q 024676          133 RPDAP--PREV------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR---SGKIVQTLE--------TKSPVTSA  193 (264)
Q Consensus       133 ~~~~~--~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~---~~~~~~~~~--------~~~~v~~~  193 (264)
                      .....  ....      ...+.....++|.+.+..++++.-.+ ...||.++   ....+....        .-.....+
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            43321  0111      12344568899999887777765543 34444443   111222221        11346789


Q ss_pred             EEcCCC-cEEEEe-CCCcEEEEECCCceeeeEEecCC----------CCceeeEcCCCCCEEEEecCCCeEEEEEcCcc
Q 024676          194 EVSRDG-RYITTA-DGSSVKFWDANHFGLVKGYNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       194 ~~s~~~-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g  260 (264)
                      +++|.. ++++.+ .++.+..+|.. ++.+..+....          ++.-+++.++ |.++++ |+-..++.|....+
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~~~~~  254 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFTPQSS  254 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEEC---
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC-CCEEEE-cCCceEEEEEecCC
Confidence            999875 444444 46788888965 44666666542          3455677774 776666 78778888765443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.02  E-value=0.091  Score=42.33  Aligned_cols=221  Identities=13%  Similarity=0.122  Sum_probs=99.9

Q ss_pred             EEEEEeCCCCcEEEeCCCCceEE-eeeCCcCCEEEEEECCCCcEEEEecC----CC-------eEEEEeCCCCcEEEE--
Q 024676           33 FLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA----DF-------TAKLWDALTGDEKHS--   98 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~----D~-------~v~iwd~~~~~~~~~--   98 (264)
                      .++.|+.  .+..||..++++.. .+......-.......++..++.|+.    ++       .+..+|..+..=...  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4445553  37889999988754 22211112222233445666666652    11       166778766532111  


Q ss_pred             eecCC-eEEEEEECCCCCEEEEeeCC-------CcEEEeeCCCCCCCCeEeccCCCCe--EEEEEecCCCeEEEEeeC--
Q 024676           99 FEHKH-IVRACAFSEDTHLLLTGGFE-------KILRIFDLNRPDAPPREVGNSSGSI--RTVAWLHSDQTILSSCTD--  166 (264)
Q Consensus        99 ~~~~~-~v~~~~~~~~~~~l~s~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~--  166 (264)
                      .+... .-..+.+  ++++++.|+.+       ..+.+||..+.+.  ........+.  .+++. .++..++.++..  
T Consensus        96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~  170 (318)
T 2woz_A           96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDD  170 (318)
T ss_dssp             BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEECCCSSCEESCEEEE-ETTEEEEECCEESS
T ss_pred             CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECCCCCCcccccEEEE-ECCEEEEEcCCCCC
Confidence            11111 0111222  56677777754       2366778765432  2221111111  11222 233333444331  


Q ss_pred             ---CCeEEEEECCCCceeEEecCCC--CEEEEEEcCCCcE-EEEeCC-----CcEEEEECCCceeeeEEecCCCCceeeE
Q 024676          167 ---SGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRY-ITTADG-----SSVKFWDANHFGLVKGYNMPCNTESASL  235 (264)
Q Consensus       167 ---d~~v~iwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~-l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~  235 (264)
                         -..+.+||+.+.+-...-....  .-.+++.. ++++ +.++.+     ..+.+||+.+.+=...-..+........
T Consensus       171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  249 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL  249 (318)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE
T ss_pred             CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE
Confidence               1358999998876433211111  11122232 4554 444422     2477888876532111112211111111


Q ss_pred             cCCCCCEEEEecCC--------------CeEEEEEcCcce
Q 024676          236 EPKLGNIFIAGGED--------------MWVHVFDFHTGE  261 (264)
Q Consensus       236 ~~~~~~~~~~gs~d--------------~~v~vwd~~~g~  261 (264)
                      ..-.+++++.||.+              ..+.+||..+.+
T Consensus       250 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          250 VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            11146788888764              357788877643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.00  E-value=0.098  Score=42.09  Aligned_cols=218  Identities=11%  Similarity=0.055  Sum_probs=100.7

Q ss_pred             EEEEEeCCCCcEEEeCCCCceEE-eeeCCcCCEEEEEECCCCcEEEEecC-------CC----eEEEEeCCCCcEEEEee
Q 024676           33 FLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA-------DF----TAKLWDALTGDEKHSFE  100 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~-------D~----~v~iwd~~~~~~~~~~~  100 (264)
                      +++.|+  ..+.+||..++++.. .+..............++..++.|+.       ..    .+..||..+..=.....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  468889999988753 22212122222233445666555552       11    26677877654211111


Q ss_pred             cCCeE--EEEEECCCCCEEEEeeCC--------CcEEEeeCCCCCCCCeEecc--CCCCeEEEEEecCCCeEEEEeeC-C
Q 024676          101 HKHIV--RACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILSSCTD-S  167 (264)
Q Consensus       101 ~~~~v--~~~~~~~~~~~l~s~~~d--------~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~-d  167 (264)
                      ...+-  ..++. -++++++.|+.+        ..+..||..+.+.  .....  ..-.-.+++.. ++ .+++.++. +
T Consensus        85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~  159 (315)
T 4asc_A           85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--GESDPLPYVVYGHTVLSH-MD-LVYVIGGKGS  159 (315)
T ss_dssp             BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE-TT-EEEEECCBCT
T ss_pred             CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcE--eECCCCCCcccceeEEEE-CC-EEEEEeCCCC
Confidence            11111  01111 156666777632        4477888765432  22111  11111122222 33 44444433 1


Q ss_pred             -----CeEEEEECCCCceeEE--ecCCCCEEEEEEcCCCcE-EEEeCCC-----cEEEEECCCceeeeEEecCCCCc--e
Q 024676          168 -----GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRY-ITTADGS-----SVKFWDANHFGLVKGYNMPCNTE--S  232 (264)
Q Consensus       168 -----~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~-l~~~~~~-----~i~iwd~~~~~~~~~~~~~~~~~--~  232 (264)
                           ..+.+||+.+.+-...  +.....-.+++.. ++++ +.++.++     .+..||+.+.+=...-..+....  .
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  238 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS  238 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence                 3588999988753321  1111111122222 4554 4444332     57888987653221111222111  1


Q ss_pred             eeEcCCCCCEEEEecCCC--------------eEEEEEcCcc
Q 024676          233 ASLEPKLGNIFIAGGEDM--------------WVHVFDFHTG  260 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~--------------~v~vwd~~~g  260 (264)
                      ....  .+++++.||.++              .+.+||..+.
T Consensus       239 ~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          239 LVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            2222  467888888643              4678887665

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.96  E-value=0.19  Score=44.83  Aligned_cols=220  Identities=6%  Similarity=-0.142  Sum_probs=122.8

Q ss_pred             CCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEEEEeCCCCcE-EEEeecC-CeEEEEEECCC
Q 024676           39 KDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGDE-KHSFEHK-HIVRACAFSED  113 (264)
Q Consensus        39 ~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~iwd~~~~~~-~~~~~~~-~~v~~~~~~~~  113 (264)
                      ..+.|+..++....  ...... .-....+++|++.+.. ..+-...+.|+.++...... ...+... .....+++++.
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             CSSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             ccccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            34556777766432  111122 2234678999975544 45656677888888765532 2222222 46789999996


Q ss_pred             CCEEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeC-CCeEEEEECCCCceeEEe-cCCCCE
Q 024676          114 THLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTL-ETKSPV  190 (264)
Q Consensus       114 ~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-d~~v~iwd~~~~~~~~~~-~~~~~v  190 (264)
                      ++.|+.+ ...+.|.+.+++.... .......-.....+++.|.++.++.+-.. ...|...++......... ..-...
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P  173 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP  173 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCC
Confidence            6555554 4568899999865332 12221222345567777777777766432 356777777644332222 233457


Q ss_pred             EEEEEcCCCcE-EEEe-CCCcEEEEECCCceeeeEEe-cCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          191 TSAEVSRDGRY-ITTA-DGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       191 ~~~~~s~~~~~-l~~~-~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      +.+++++++.. +.+- ....|...|+.......... ....+..++++.  +.++++-..++.|...|..+|+.
T Consensus       174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~--~~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS--SEEEEECTTTCSEEEEESSSCCC
T ss_pred             cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC--CEEEEecCCCCEEEEEECCCCcc
Confidence            89999987544 3443 34678888886543221111 112334455543  47777877888899999877753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.55  E-value=0.16  Score=40.33  Aligned_cols=181  Identities=16%  Similarity=0.141  Sum_probs=87.0

Q ss_pred             CCeEEEEEeCC-----CCcEEEeCCCCc---eEEeee--CCcCCEEEEEECCCCcEEEEecCC-----CeEEEEeCCCCc
Q 024676           30 DGFFLVSASKD-----SSPMLRNGETGD---WIGTFE--GHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGD   94 (264)
Q Consensus        30 ~g~~l~t~s~d-----~~v~i~~~~~~~---~~~~~~--~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iwd~~~~~   94 (264)
                      +++.++.|+.+     ..+.++|..+++   +...-.  .....-.++.+  +++.++.|+.+     ..+.++|..+..
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45666777655     357788988887   643221  11111111222  56666666654     357788887764


Q ss_pred             EEEE--eecCCeEEEEEECCCCCEEEEeeCC-----CcEEEeeCCCCCCCCeEeccC--CCCeEEEEEecCCCeEEEEee
Q 024676           95 EKHS--FEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        95 ~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      =...  ......-..++. .++++++.|+.+     ..+..||+.+.+.  ......  ...-..++..  ++.+++.++
T Consensus       140 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~i~v~GG  214 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHW--TNVTPMATKRSGAGVALL--NDHIYVVGG  214 (301)
T ss_dssp             EEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             EEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcE--EeCCCCCcccccceEEEE--CCEEEEEeC
Confidence            2221  111111111111 256777777654     4477888765432  222111  1111122222  344544444


Q ss_pred             CC-----CeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcEEEE-eCC-----CcEEEEECCCc
Q 024676          166 DS-----GGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITT-ADG-----SSVKFWDANHF  218 (264)
Q Consensus       166 ~d-----~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~-~~~-----~~i~iwd~~~~  218 (264)
                      .+     ..+.+||+++.+-...-...  ..-.++... ++++++. +.+     ..+.+||.++.
T Consensus       215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            32     46899999987643322111  111122222 5555444 332     34677887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.028  Score=46.12  Aligned_cols=111  Identities=11%  Similarity=0.020  Sum_probs=68.9

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCC-cCCEEEEEEC---CCCcEEEEe-cCCCeEEEEeCCCCcEEEEeec----
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLD---ANALFSASG-SADFTAKLWDALTGDEKHSFEH----  101 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H-~~~V~~v~~~---~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~----  101 (264)
                      +.+++.++.||.+.-.|..+|+.+=+++.- ..++....-.   .++..++.. ..||.+..++..+|..+..+..    
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            357889999999999999999765444322 1233221100   133344443 6899999999988865554432    


Q ss_pred             -CCeEEE----EEEC----CCCCEEEEeeCCCcEEEeeCCCCCCCCeEe
Q 024676          102 -KHIVRA----CAFS----EDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (264)
Q Consensus       102 -~~~v~~----~~~~----~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (264)
                       ..++..    +...    ..+..+++|+.++.+...|+++++......
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence             223321    0000    145678899999999999999888665543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.32  E-value=0.14  Score=41.95  Aligned_cols=53  Identities=9%  Similarity=-0.069  Sum_probs=26.3

Q ss_pred             cEEEEECCCc--eeeeEEecCCCCceeeEcCCCCCEEEEecCCC------eEEEEEcCcceee
Q 024676          209 SVKFWDANHF--GLVKGYNMPCNTESASLEPKLGNIFIAGGEDM------WVHVFDFHTGEQI  263 (264)
Q Consensus       209 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~------~v~vwd~~~g~~i  263 (264)
                      .+.+||+.+.  +.+.....+-..-.... . .+++++.||.++      .|.++++++++.+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLP-W-NNSLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEE-E-TTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEE-e-CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            4778888754  33332222111111222 2 478888888653      3555687776643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.31  E-value=0.34  Score=39.47  Aligned_cols=151  Identities=9%  Similarity=0.036  Sum_probs=91.1

Q ss_pred             EEEEECC-CCcEEEEecCCCeEEEEeCCCCcEEEE-eec-------CCeEEEEEE---CCCCCEEEEee-----------
Q 024676           65 WSCCLDA-NALFSASGSADFTAKLWDALTGDEKHS-FEH-------KHIVRACAF---SEDTHLLLTGG-----------  121 (264)
Q Consensus        65 ~~v~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~-------~~~v~~~~~---~~~~~~l~s~~-----------  121 (264)
                      .+.+|++ ++.+.++.-..++|..||...+..... ++.       ...+..+.+   +|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3567876 455556666899999999875543322 222       113578999   68877766432           


Q ss_pred             --CCCcEEEeeCC---CCCCCCeEecc------------CCCCeEEEEEecCCCeEEEEeeCC-CeEEEEECCCCceeEE
Q 024676          122 --FEKILRIFDLN---RPDAPPREVGN------------SSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQT  183 (264)
Q Consensus       122 --~d~~i~~~d~~---~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~  183 (264)
                        .++.+..||+.   +++........            .......++.-+.+. ..++++.. +.|...|..... +..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~-~~~  173 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKT-VST  173 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCC-EEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCE-Eee
Confidence              15778899998   66554333211            112345566555544 44445554 667777765432 222


Q ss_pred             e--cC-----CCCEEEEEEcCCCcEEEEe-CCCcEEEEECCC
Q 024676          184 L--ET-----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (264)
Q Consensus       184 ~--~~-----~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~  217 (264)
                      +  ..     ....+.++++|+|+.|+.. .++.+.-+|+.+
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            2  11     1125689999999776554 367888889874

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.98  E-value=1.2  Score=42.77  Aligned_cols=237  Identities=10%  Similarity=0.028  Sum_probs=129.8

Q ss_pred             CCCeeeeEeccCCC---CCeEEEEEeC-CCCcEEEeCCCCceEEe--eeCCcCCEEEEEEC--CCCcEEEEecCCCeEEE
Q 024676           16 SRPVVDLFYSPITP---DGFFLVSASK-DSSPMLRNGETGDWIGT--FEGHKGAVWSCCLD--ANALFSASGSADFTAKL   87 (264)
Q Consensus        16 ~~~v~~~~~~~~~~---~g~~l~t~s~-d~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~--~~~~~l~s~s~D~~v~i   87 (264)
                      ...|.|+++.|..+   .+++++.|.. |++++|+++.+.+.+..  +.+ .....++.+.  ....++..|-.||.+.-
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            45799999887432   2478999997 99999999987765432  322 1233444332  23467788888998755


Q ss_pred             Ee--CCCCcEEEE---eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEE-EEecCC--Ce
Q 024676           88 WD--ALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-AWLHSD--QT  159 (264)
Q Consensus        88 wd--~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~--~~  159 (264)
                      +.  ..++.....   +--..++....+...+..-+-+..++..-+|--+ +..  ....-.-..+..+ .|....  +.
T Consensus       632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l--~~s~l~~~~v~~~~~F~se~~~~g  708 (1158)
T 3ei3_A          632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKL--VFSNVNLKEVNYMCPLNSDGYPDS  708 (1158)
T ss_dssp             EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSE--EEEEBSSSCCCEEEEECCSSSTTE
T ss_pred             EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cce--EEeccChHHhceEeccCcccCCCc
Confidence            54  444543221   2233455544444433333333334555555432 211  1111111223333 333221  22


Q ss_pred             EEEEeeCCCeEEEEECCCCc--eeEEecCCCCEEEEEEcCCCcEEE--EeC-----------------------------
Q 024676          160 ILSSCTDSGGVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYIT--TAD-----------------------------  206 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~--~~~-----------------------------  206 (264)
                      ++. .+ ++.++|.-+.+.+  .++.+.....+..++++|+.+.++  ++.                             
T Consensus       709 ~v~-~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          709 LAL-AN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EEE-EC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             EEE-Ec-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            333 23 4679998876543  234555666788888888765322  110                             


Q ss_pred             -------------------CCcEEEEECCCceeeeEEecCCCCc--ee---eEcCCCCCEEEEec----------CCCeE
Q 024676          207 -------------------GSSVKFWDANHFGLVKGYNMPCNTE--SA---SLEPKLGNIFIAGG----------EDMWV  252 (264)
Q Consensus       207 -------------------~~~i~iwd~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~gs----------~d~~v  252 (264)
                                         ...|++.|..+++.+..+.+..+..  +.   .+..+...+|+.|.          .-|.|
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri  866 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI  866 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence                               0237788888888888887754432  22   12222246777765          35789


Q ss_pred             EEEEcC
Q 024676          253 HVFDFH  258 (264)
Q Consensus       253 ~vwd~~  258 (264)
                      ++|++.
T Consensus       867 ~vf~v~  872 (1158)
T 3ei3_A          867 VVFQYS  872 (1158)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999875

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.95  E-value=0.56  Score=38.68  Aligned_cols=135  Identities=16%  Similarity=0.190  Sum_probs=75.1

Q ss_pred             CCCcEEEeeCCCCCCCCeEec--c-----CCCCeEEEEEec--CCC-eEEEEeeC--CCeEEEEECCCC--ce--eEEec
Q 024676          122 FEKILRIFDLNRPDAPPREVG--N-----SSGSIRTVAWLH--SDQ-TILSSCTD--SGGVRLWDARSG--KI--VQTLE  185 (264)
Q Consensus       122 ~d~~i~~~d~~~~~~~~~~~~--~-----~~~~i~~~~~~~--~~~-~~~~~~~~--d~~v~iwd~~~~--~~--~~~~~  185 (264)
                      .+|.|.++|.++.......+.  .     .......+.+..  ++. .+++....  +.+|.+|++..+  ..  +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            678899999874322222211  1     123556666654  233 34444333  457888776543  22  22333


Q ss_pred             C--CCCEEEEEEcCCCcEEEEeC----C--------------CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEE
Q 024676          186 T--KSPVTSAEVSRDGRYITTAD----G--------------SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (264)
Q Consensus       186 ~--~~~v~~~~~s~~~~~l~~~~----~--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (264)
                      .  -...+.+.+.++|.+.++..    +              +.+..+|..  +.......-..++-++++|+...++++
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEE
Confidence            3  24589999999999877653    1              234444442  211111111234567888864456667


Q ss_pred             ecCCCeEEEEEcC
Q 024676          246 GGEDMWVHVFDFH  258 (264)
Q Consensus       246 gs~d~~v~vwd~~  258 (264)
                      -+..+.|+.|+++
T Consensus       239 dt~~~~I~~~~~~  251 (355)
T 3sre_A          239 ELLAHKIHVYEKH  251 (355)
T ss_dssp             EGGGTEEEEEEEC
T ss_pred             eCCCCeEEEEEEC
Confidence            7778899999975

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.86  E-value=0.28  Score=39.06  Aligned_cols=181  Identities=10%  Similarity=0.135  Sum_probs=85.9

Q ss_pred             CCeEEEEEeCC----CCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC------CeEEEEeCCCCcEEE
Q 024676           30 DGFFLVSASKD----SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDEKH   97 (264)
Q Consensus        30 ~g~~l~t~s~d----~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~   97 (264)
                      ++..++.|+.+    ..+.++|..++++...  +......-.++.+  +++.++.|+.+      ..+.+||..+..=..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            45666777655    4567789988876432  2111111111222  56666667655      468888887764222


Q ss_pred             Eee--cCCeEEEEEECCCCCEEEEeeC---------CCcEEEeeCCCCCCCCeEeccC--CCCeEEEEEecCCCeEEEEe
Q 024676           98 SFE--HKHIVRACAFSEDTHLLLTGGF---------EKILRIFDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        98 ~~~--~~~~v~~~~~~~~~~~l~s~~~---------d~~i~~~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ...  ....-..++ ..++++++.|+.         -..+..||+.+.+.  ......  .-.-..++.. ++..+++++
T Consensus       133 ~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~-~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW--TELCPMIEARKNHGLVFV-KDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             CCCCcCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeE--EECCCccchhhcceEEEE-CCEEEEEeC
Confidence            111  111111111 125666666653         34477888865432  222111  1111122222 333334433


Q ss_pred             eCC----CeEEEEECCCCceeEE--ecCC-CCEEEEEEcCCCcEE-EEeCC-----CcEEEEECCCc
Q 024676          165 TDS----GGVRLWDARSGKIVQT--LETK-SPVTSAEVSRDGRYI-TTADG-----SSVKFWDANHF  218 (264)
Q Consensus       165 ~~d----~~v~iwd~~~~~~~~~--~~~~-~~v~~~~~s~~~~~l-~~~~~-----~~i~iwd~~~~  218 (264)
                      .+.    ..+.+||+.+.+-...  +... .....+.+  +++++ .++.+     ..+..||+.+.
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            221    3588999988753321  1111 11222222  55554 44432     35788898764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.83  E-value=0.62  Score=38.23  Aligned_cols=98  Identities=18%  Similarity=0.150  Sum_probs=57.3

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEeee---CCcCCEEEEEECCC----CcEEEEecCC-----C
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFE---GHKGAVWSCCLDAN----ALFSASGSAD-----F   83 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~~~---~H~~~V~~v~~~~~----~~~l~s~s~D-----~   83 (264)
                      .-.+|+|.|   +|++++ +..++.|++++  +++.  +..+.   .-......++++|+    +.+.++-..+     .
T Consensus        32 ~P~~ia~~p---dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           32 VPWALAFLP---DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CEEEEEECT---TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CceEEEEcC---CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            345889986   888554 46678888887  4432  22221   12345688999998    4443443322     5


Q ss_pred             eEEEEeCCCCc-----EEEE-eec----CCeEEEEEECCCCCEEEEee
Q 024676           84 TAKLWDALTGD-----EKHS-FEH----KHIVRACAFSEDTHLLLTGG  121 (264)
Q Consensus        84 ~v~iwd~~~~~-----~~~~-~~~----~~~v~~~~~~~~~~~l~s~~  121 (264)
                      .|..++...+.     .+.. ++.    .+....+.+.|++.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            67677765431     1111 221    12346789999998777643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.75  E-value=0.38  Score=38.18  Aligned_cols=182  Identities=12%  Similarity=0.199  Sum_probs=84.4

Q ss_pred             CCeEEEEEeCCC-----CcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCCC-----eEEEEeCCCCcEEE
Q 024676           30 DGFFLVSASKDS-----SPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALTGDEKH   97 (264)
Q Consensus        30 ~g~~l~t~s~d~-----~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~   97 (264)
                      ++..++.|+.++     .+.++|..++++...  +...+..-.++.+  ++...+.|+.++     .+.+||..+..=..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            456666666543     467788888876432  2111111111222  455656665543     56778877654222


Q ss_pred             Eee--cCCeEEEEEECCCCCEEEEeeCC-------CcEEEeeCCCCCCCCeEecc--CCCCeEEEEEecCCCeEEEEeeC
Q 024676           98 SFE--HKHIVRACAFSEDTHLLLTGGFE-------KILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        98 ~~~--~~~~v~~~~~~~~~~~l~s~~~d-------~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      ...  ....-..++. .++++++.|+.+       ..+..||+.+.+.  .....  ....-.+++..  ++.+++.++.
T Consensus       139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  213 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW--TYIAEMSTRRSGAGVGVL--NNLLYAVGGH  213 (302)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE--EECCCCccccccccEEEE--CCEEEEECCC
Confidence            111  1111111111 256666666542       3477888765432  22211  11111122222  3345444443


Q ss_pred             C-----CeEEEEECCCCceeEEecCC--CCEEEEEEcCCCcEEE-EeCC-----CcEEEEECCCce
Q 024676          167 S-----GGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYIT-TADG-----SSVKFWDANHFG  219 (264)
Q Consensus       167 d-----~~v~iwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~-~~~~-----~~i~iwd~~~~~  219 (264)
                      +     ..+.+||+++.+-...-...  ..-..++.. ++++++ ++.+     ..+.+||+.+.+
T Consensus       214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            2     46889999887643321111  111122222 555544 4432     247888887653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.74  E-value=0.68  Score=37.99  Aligned_cols=138  Identities=7%  Similarity=0.019  Sum_probs=75.1

Q ss_pred             CEEEEEECCCCcEEEEecCCCeEEEEeCCCCcE--EEEee----cCCeEEEEEECCC---CCEEEEeeC-C-----CcEE
Q 024676           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDE--KHSFE----HKHIVRACAFSED---THLLLTGGF-E-----KILR  127 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~----~~~~v~~~~~~~~---~~~l~s~~~-d-----~~i~  127 (264)
                      .-+.++|.|++.++++ ..++.|++++  ++..  +..+.    .......++++|+   +..|+.+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4468999999987665 4568999998  4432  12221    1345789999998   555555433 2     5566


Q ss_pred             EeeCCCCCC-----CCeEec---cCCCCeEEEEEecCCCeEEEEeeC-------------CCeEEEEECCC---------
Q 024676          128 IFDLNRPDA-----PPREVG---NSSGSIRTVAWLHSDQTILSSCTD-------------SGGVRLWDARS---------  177 (264)
Q Consensus       128 ~~d~~~~~~-----~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~-------------d~~v~iwd~~~---------  177 (264)
                      .++......     ......   ........+++.+++ .+.++.++             .+.|.-+|...         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            677653211     111111   001123467777766 44444322             14565566543         


Q ss_pred             -----CceeEEecCCCCEEEEEEcC-CCcEEEEe
Q 024676          178 -----GKIVQTLETKSPVTSAEVSR-DGRYITTA  205 (264)
Q Consensus       178 -----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~  205 (264)
                           ...+..... .....++++| ++.++++-
T Consensus       188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred             CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence                 111222222 3456788999 67776654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.62  E-value=0.87  Score=38.46  Aligned_cols=133  Identities=11%  Similarity=0.114  Sum_probs=81.1

Q ss_pred             CCCcEEEeCCCCceEEeeeCC----cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc------------EEEEee---
Q 024676           40 DSSPMLRNGETGDWIGTFEGH----KGAVWSCCLDANALFSASGSADFTAKLWDALTGD------------EKHSFE---  100 (264)
Q Consensus        40 d~~v~i~~~~~~~~~~~~~~H----~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~------------~~~~~~---  100 (264)
                      ++.+|+-++......+.+.--    -..|..+..+|+|.++|-.+ ++.|.|-.+..+.            ..+.+.   
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            456777676644333333321    22567799999999987664 5678887765221            122333   


Q ss_pred             ----cCCeEEEEEECCC---CCEEEEeeCCCcEEEeeCCCCCCCCeEec---------cCCCCeEEEEEecCCCeEEE-E
Q 024676          101 ----HKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAPPREVG---------NSSGSIRTVAWLHSDQTILS-S  163 (264)
Q Consensus       101 ----~~~~v~~~~~~~~---~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~-~  163 (264)
                          ...+|..+.|||-   +..|++-..|++||+||+.........+.         .....+.+++|.+++-++.+ +
T Consensus       119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence                2457999999994   56888899999999999976332222111         11145677787764444333 3


Q ss_pred             eeCCCeEEEE
Q 024676          164 CTDSGGVRLW  173 (264)
Q Consensus       164 ~~~d~~v~iw  173 (264)
                      .++.|-|.-.
T Consensus       199 ~t~~GDIYAl  208 (452)
T 3pbp_A          199 TTEGGDIFAF  208 (452)
T ss_dssp             CTTSCEEEEE
T ss_pred             cCCCCCEEEE
Confidence            3355666543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.37  E-value=0.3  Score=39.01  Aligned_cols=181  Identities=15%  Similarity=0.193  Sum_probs=84.6

Q ss_pred             CCeEEEEEeC----C-----CCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCC-----CeEEEEeCCCC
Q 024676           30 DGFFLVSASK----D-----SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTG   93 (264)
Q Consensus        30 ~g~~l~t~s~----d-----~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D-----~~v~iwd~~~~   93 (264)
                      +++.++.|+.    +     ..+.++|..++++...  +...+..-.++.+  +++.++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4556666665    2     3577889888876432  2111111112222  55666666543     35778887765


Q ss_pred             cEEEE--eecCC-eEEEEEECCCCCEEEEeeCC-----CcEEEeeCCCCCCCCeEecc--CCCCeEEEEEecCCCeEEEE
Q 024676           94 DEKHS--FEHKH-IVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        94 ~~~~~--~~~~~-~v~~~~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~  163 (264)
                      .=...  .+... .-..+.+  ++++++.|+.+     ..+..||+.+.+.  .....  ....-.+++..  ++.+++.
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~iyv~  221 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW--RMITAMNTIRSGAGVCVL--HNCIYAA  221 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE--eeCCCCCCccccceEEEE--CCEEEEE
Confidence            32111  11111 1111222  56677777654     4477888765432  11111  11111122222  3345444


Q ss_pred             eeCC-----CeEEEEECCCCceeEE--ecCCCCEEEEEEcCCCcEEEE-eCC-----CcEEEEECCCce
Q 024676          164 CTDS-----GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYITT-ADG-----SSVKFWDANHFG  219 (264)
Q Consensus       164 ~~~d-----~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~-~~~-----~~i~iwd~~~~~  219 (264)
                      ++.+     ..+.+||+++.+-...  +.....-.++... ++++++. +.+     ..+.+||+.+.+
T Consensus       222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            4332     4689999988764321  1111111122222 4555444 322     357788887653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.07  Score=43.77  Aligned_cols=104  Identities=15%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecCC--CCEEEEEE--cC-CCcEEEE--eCCCcEEEEECCCceeeeEEecCCCCc-
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEV--SR-DGRYITT--ADGSSVKFWDANHFGLVKGYNMPCNTE-  231 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~--s~-~~~~l~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~-  231 (264)
                      ++..++.||.|.-+|.++|+.+..++..  .++....-  .+ ++..++.  ..++.+..+|..++...-.+..+.... 
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            4455677899999999999999888754  33322110  01 2334433  357888888887775443333321110 


Q ss_pred             -eeeEc-------C---CCCCEEEEecCCCeEEEEEcCcceee
Q 024676          232 -SASLE-------P---KLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       232 -~~~~~-------~---~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                       .....       +   ..+..+.+|+.++.++-.|+.+|+++
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred             cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence             11110       0   02567889999999999999999875

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.04  E-value=0.87  Score=38.48  Aligned_cols=93  Identities=12%  Similarity=0.168  Sum_probs=65.7

Q ss_pred             CCeEEEEECCCCceeEEecCC-----CCEEEEEEcCCCcEEEEeCCCcEEEEECCCce------------eeeEEecC--
Q 024676          167 SGGVRLWDARSGKIVQTLETK-----SPVTSAEVSRDGRYITTADGSSVKFWDANHFG------------LVKGYNMP--  227 (264)
Q Consensus       167 d~~v~iwd~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~------------~~~~~~~~--  227 (264)
                      ++.||.-++..+...+.+...     ..+..+..+|+|.+++...+..|.|-.+....            .++.|+..  
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            378998888754444444332     25778999999999998888899998886211            13456653  


Q ss_pred             -----CCCceeeEcCCC--CCEEEEecCCCeEEEEEcCc
Q 024676          228 -----CNTESASLEPKL--GNIFIAGGEDMWVHVFDFHT  259 (264)
Q Consensus       228 -----~~~~~~~~~~~~--~~~~~~gs~d~~v~vwd~~~  259 (264)
                           .......|+|-.  +..|++=-+|+.||+||+..
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                 224456677643  45888888899999999875

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.91  E-value=1.5  Score=37.19  Aligned_cols=212  Identities=10%  Similarity=0.118  Sum_probs=117.5

Q ss_pred             CcEEEeCCCCce--EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEE
Q 024676           42 SPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT  119 (264)
Q Consensus        42 ~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  119 (264)
                      ++-|.|+..+..  .+.+.+-     +.-.+|..+.+|-=+ ..+++|+|+++...+..+....+|..-.|-....+-+.
T Consensus        49 ~vvIiDl~~~~~~~rrpi~Ad-----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV  122 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIRRPISAD-----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV  122 (494)
T ss_dssp             EEEEEETTSTTSCEEEECCCS-----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE
T ss_pred             eEEEEECCCCCcceecccccc-----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE
Confidence            566667766432  2233321     122466665544322 67999999999998888887778888778665544333


Q ss_pred             eeCCCcEEEeeCCCCCCCCeEeccC----CCCeEEEEEecCCCeEEEEee------CCCeEEEEECCCCceeEEecCCCC
Q 024676          120 GGFEKILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCT------DSGGVRLWDARSGKIVQTLETKSP  189 (264)
Q Consensus       120 ~~~d~~i~~~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~------~d~~v~iwd~~~~~~~~~~~~~~~  189 (264)
                        .+..+.-|+++....+...+.-+    ...|......++..++++.|-      -.|.+.+|..+.+.. +.++++..
T Consensus       123 --T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa  199 (494)
T 1bpo_A          123 --TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAA  199 (494)
T ss_dssp             --CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEE
T ss_pred             --cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeee
Confidence              34678899987543332222211    234555555666777665443      226788888875543 34555432


Q ss_pred             E-EEEEEcCCC---cEEEEe----CCCcEEEEECCCc---ee---eeEEe--cCC-----CCceeeEcCCCCCEEEEecC
Q 024676          190 V-TSAEVSRDG---RYITTA----DGSSVKFWDANHF---GL---VKGYN--MPC-----NTESASLEPKLGNIFIAGGE  248 (264)
Q Consensus       190 v-~~~~~s~~~---~~l~~~----~~~~i~iwd~~~~---~~---~~~~~--~~~-----~~~~~~~~~~~~~~~~~gs~  248 (264)
                      . .++.+..+.   ++++.+    .++.++|-++...   ..   -+...  ++.     .+.....++++| ++..-..
T Consensus       200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK  278 (494)
T 1bpo_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITK  278 (494)
T ss_dssp             EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEET
T ss_pred             eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEec
Confidence            2 122222111   233322    2368889888532   10   11111  111     123344455544 4445556


Q ss_pred             CCeEEEEEcCcceee
Q 024676          249 DMWVHVFDFHTGEQI  263 (264)
Q Consensus       249 d~~v~vwd~~~g~~i  263 (264)
                      -|.+++||+.||..|
T Consensus       279 ~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          279 YGYIHLYDLETGTCI  293 (494)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CceEEEEecccceee
Confidence            799999999998754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.00  E-value=3.1  Score=37.57  Aligned_cols=148  Identities=8%  Similarity=0.032  Sum_probs=74.3

Q ss_pred             CCeEEEEEeCC----CCcEEEeCCCCceEEee-e-----CCcCCE-EEEEECC-CCcEEEEecCCC------eEEEEeCC
Q 024676           30 DGFFLVSASKD----SSPMLRNGETGDWIGTF-E-----GHKGAV-WSCCLDA-NALFSASGSADF------TAKLWDAL   91 (264)
Q Consensus        30 ~g~~l~t~s~d----~~v~i~~~~~~~~~~~~-~-----~H~~~V-~~v~~~~-~~~~l~s~s~D~------~v~iwd~~   91 (264)
                      ++..++.|+.+    ..+.++|..++++...- .     ...... .+++..+ ++..++.|+.++      .+.+||..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            45566666643    35677888888765322 1     111111 2223332 666666666543      46778877


Q ss_pred             CCcEEEE--eecCCeEEEEEECCCCCEEEEeeCCC--cEEEeeCCCCCCCCeEecc------CCCCeEEEEEecCCCeEE
Q 024676           92 TGDEKHS--FEHKHIVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPREVGN------SSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        92 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~--~i~~~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~  161 (264)
                      +..=...  ......-..++.-.++++++.|+.++  .+.+||..+...  .....      ....-..+.+....+.++
T Consensus       477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W--~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF--KDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE--EECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce--EEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            6531111  11111112233324788888887654  688888876432  22111      111112233343324454


Q ss_pred             EEeeC--C-----CeEEEEECCCCc
Q 024676          162 SSCTD--S-----GGVRLWDARSGK  179 (264)
Q Consensus       162 ~~~~~--d-----~~v~iwd~~~~~  179 (264)
                      +.|+.  +     ..+.+||+.+.+
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCc
Confidence            44433  1     458899998877

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.88  E-value=1  Score=36.67  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=27.3

Q ss_pred             CCeEEEEEeC-C---------CCcEEEeCCCCceEEeeeCC-cCCE-EEEEECCCCcEEEEecCC
Q 024676           30 DGFFLVSASK-D---------SSPMLRNGETGDWIGTFEGH-KGAV-WSCCLDANALFSASGSAD   82 (264)
Q Consensus        30 ~g~~l~t~s~-d---------~~v~i~~~~~~~~~~~~~~H-~~~V-~~v~~~~~~~~l~s~s~D   82 (264)
                      +++..+.|+. +         ..+.+||..++++...-... ...- .+++. .++++.+.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            4556666665 2         35788899888765321111 1111 12222 456666677654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.85  E-value=5.4  Score=39.18  Aligned_cols=212  Identities=10%  Similarity=0.112  Sum_probs=111.7

Q ss_pred             CcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEE
Q 024676           42 SPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT  119 (264)
Q Consensus        42 ~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  119 (264)
                      +|.|.|...+..+  +.+.+-     +.-.+|..+.+|-= ...+++|+|+.+...+..+....+|..-.|-....+-+.
T Consensus        49 ~vvIidl~~~~~~~rrpi~Ad-----sAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV  122 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIRRPISAD-----SAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV  122 (1630)
T ss_pred             eEEEEECCCCCCcccccccch-----hhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE
Confidence            5666676654321  222221     12245666554432 367899999999888888777788888888766655443


Q ss_pred             eeCCCcEEEeeCCCCCCCCeEeccC----CCCeEEEEEecCCCeEEEEee------CCCeEEEEECCCCceeEEecCCCC
Q 024676          120 GGFEKILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCT------DSGGVRLWDARSGKIVQTLETKSP  189 (264)
Q Consensus       120 ~~~d~~i~~~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~------~d~~v~iwd~~~~~~~~~~~~~~~  189 (264)
                        .+..+.-|++.....+...+..+    ...|....-.++..++++.|-      -.|.+.+|..+.+.. +.++++..
T Consensus       123 --T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~  199 (1630)
T 1xi4_A          123 --TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAA  199 (1630)
T ss_pred             --cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHh
Confidence              23678999986433222211111    234555555666677665443      236778887765432 22332211


Q ss_pred             -EEEEEEc---CCCcEEEEe----CCCcEEEEECCCc-eeeeEE-------ecCC-----CCceeeEcCCCCCEEEEecC
Q 024676          190 -VTSAEVS---RDGRYITTA----DGSSVKFWDANHF-GLVKGY-------NMPC-----NTESASLEPKLGNIFIAGGE  248 (264)
Q Consensus       190 -v~~~~~s---~~~~~l~~~----~~~~i~iwd~~~~-~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~gs~  248 (264)
                       ...+...   +...+++.+    .++.++|-++... .....|       .++.     .+.....+++.| ++..-..
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk  278 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITK  278 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEec
Confidence             1111111   111233222    2467888887442 101111       1111     122333444433 3445556


Q ss_pred             CCeEEEEEcCcceee
Q 024676          249 DMWVHVFDFHTGEQI  263 (264)
Q Consensus       249 d~~v~vwd~~~g~~i  263 (264)
                      -|.+++||+.||..|
T Consensus       279 ~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          279 YGYIHLYDLETGTCI  293 (1630)
T ss_pred             CceEEEEecccchhh
Confidence            789999999988654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.58  E-value=2.2  Score=33.90  Aligned_cols=176  Identities=13%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             EEEecCCCeEEEEeCCCCcEE-EEeecC-CeEEEEEECCCCCEEEEeeC-----C------CcEEEeeCCCCCCCCeEec
Q 024676           76 SASGSADFTAKLWDALTGDEK-HSFEHK-HIVRACAFSEDTHLLLTGGF-----E------KILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        76 l~s~s~D~~v~iwd~~~~~~~-~~~~~~-~~v~~~~~~~~~~~l~s~~~-----d------~~i~~~d~~~~~~~~~~~~  142 (264)
                      ++.|+  ..+..||..++.=. ...+.. ..........++++++.|+.     .      ..+..||..+.+.  ....
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~   83 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGMP   83 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EECC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EECC
Confidence            34454  46888998876522 122111 11122233457788888873     1      1256778765432  2221


Q ss_pred             cCCCCe--EEEEEecCCCeEEEEeeC--------CCeEEEEECCCCceeEE--ecCCCCEEEEEEcCCCcEEE-EeC-C-
Q 024676          143 NSSGSI--RTVAWLHSDQTILSSCTD--------SGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYIT-TAD-G-  207 (264)
Q Consensus       143 ~~~~~i--~~~~~~~~~~~~~~~~~~--------d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~-~~~-~-  207 (264)
                      ....+.  ..++..  ++.+++.++.        -..+.+||+.+.+-...  +.....-.+++. -++++++ ++. + 
T Consensus        84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTT
T ss_pred             CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCC
Confidence            111111  112222  3344444331        14588999988753221  111111112222 3455544 443 1 


Q ss_pred             ----CcEEEEECCCceeeeEEecCCCC--ceeeEcCCCCCEEEEecCCC-----eEEEEEcCcc
Q 024676          208 ----SSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGNIFIAGGEDM-----WVHVFDFHTG  260 (264)
Q Consensus       208 ----~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gs~d~-----~v~vwd~~~g  260 (264)
                          ..+.+||..+.+=...-..+...  ......  .+++++.||.++     .+.+||..+.
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence                35888998765321111122111  112222  467888888654     5788887765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.50  E-value=5.7  Score=38.24  Aligned_cols=208  Identities=13%  Similarity=0.079  Sum_probs=109.6

Q ss_pred             EEEEEeCCCCcEEEeCCCCceE--EeeeCCcCCEEEEEECCC------CcEEEEecC-CCeEEEEeCCCCcEEEEeec--
Q 024676           33 FLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDAN------ALFSASGSA-DFTAKLWDALTGDEKHSFEH--  101 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~------~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~--  101 (264)
                      +++.++ .+.+.++.+..+++.  .... -.+.|.|+++.+.      +.+++.|.. |++++|+.+.+.+.+.....  
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~  602 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG  602 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC
Confidence            455554 456666666555432  1111 2457999998753      468888886 99999999987766554332  


Q ss_pred             CCeEEEEEEC--CCCCEEEEeeCCCcEEEeeCC--CCCCCCe--EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 024676          102 KHIVRACAFS--EDTHLLLTGGFEKILRIFDLN--RPDAPPR--EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (264)
Q Consensus       102 ~~~v~~~~~~--~~~~~l~s~~~d~~i~~~d~~--~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~  175 (264)
                      ......+.+.  ....+|..|..||.+..+.++  +++....  ...+ ..++.-..+...+..-+..+++ +-..++-.
T Consensus       603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~-rp~liy~~  680 (1158)
T 3ei3_A          603 EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD-RPTVIYSS  680 (1158)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS-SCEEEEES
T ss_pred             CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC-CCEEEEEc
Confidence            2233333322  233567788889987666554  2222111  1111 1233333333333333333333 55555554


Q ss_pred             CCCceeEEecCCCCEEEEEEcCCC--cEEEEeCCCcEEEEECCCc--eeeeEEecCCCCceeeEcCCCCCEEE
Q 024676          176 RSGKIVQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHF--GLVKGYNMPCNTESASLEPKLGNIFI  244 (264)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (264)
                      ++.-....+....--....|+...  .-++..+++.++|..+.+.  -.+++++..+.+..++.++..+.+++
T Consensus       681 ~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v  753 (1158)
T 3ei3_A          681 NHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGV  753 (1158)
T ss_dssp             SSSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEE
T ss_pred             CCceEEeccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEE
Confidence            432222333332222333454322  2344555567888876543  34677777788888888876444433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.66  E-value=3.7  Score=33.78  Aligned_cols=165  Identities=10%  Similarity=0.049  Sum_probs=94.2

Q ss_pred             CCCCcEEEeCCC--CceE-EeeeC-----CcCCEEEEEECC--CC--cEEEEec--CCCeEEEEeCCCCc----EEEEee
Q 024676           39 KDSSPMLRNGET--GDWI-GTFEG-----HKGAVWSCCLDA--NA--LFSASGS--ADFTAKLWDALTGD----EKHSFE  100 (264)
Q Consensus        39 ~d~~v~i~~~~~--~~~~-~~~~~-----H~~~V~~v~~~~--~~--~~l~s~s--~D~~v~iwd~~~~~----~~~~~~  100 (264)
                      .+|.|.++|..+  ++.. -.+.+     ..-.-+.+.+.+  ++  .+++.-.  .+.++.+|++....    .+..++
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            688899999874  2321 12222     223456666644  34  2334422  25788898875532    222333


Q ss_pred             cC--CeEEEEEECCCCCEEEEee---CC------------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676          101 HK--HIVRACAFSEDTHLLLTGG---FE------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus       101 ~~--~~v~~~~~~~~~~~l~s~~---~d------------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      +.  ...+.+.+.+++.+.++..   .|            ..-++|-+..++  .......-...+.++|+|++..+.++
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--~~~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--CEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe--EEEeecCCcccCcceECCCCCEEEEE
Confidence            32  3478899999998766643   11            122333332222  22221222346789999988888887


Q ss_pred             eeCCCeEEEEECCC-Cce--eEEecCCCCEEEEEEcC-CCcEEEEe
Q 024676          164 CTDSGGVRLWDARS-GKI--VQTLETKSPVTSAEVSR-DGRYITTA  205 (264)
Q Consensus       164 ~~~d~~v~iwd~~~-~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~  205 (264)
                      -+..+.|..||+.. ++.  ...+......-.+++.+ +|.+.+++
T Consensus       239 dt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          239 ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence            77778999999863 332  22333345577899999 58876643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.76  E-value=5.5  Score=33.86  Aligned_cols=58  Identities=10%  Similarity=0.016  Sum_probs=38.1

Q ss_pred             CEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE--Eee-------cCCeEEEEEECCC---CCEEEEe
Q 024676           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFE-------HKHIVRACAFSED---THLLLTG  120 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~-------~~~~v~~~~~~~~---~~~l~s~  120 (264)
                      .-+.++|.|++.++++-...+.|++++..++....  .+.       .......++++|+   +..|+.+
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            45789999999988876554578888765554322  221       1345678999995   5555544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.21  E-value=2.7  Score=36.85  Aligned_cols=116  Identities=10%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             cCCeEEEEEECCCCCEEEEee-CCCcEEEeeCCCC------CC-----CCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676          101 HKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRP------DA-----PPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~------~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      ..+....+..+|++++++.++ .+.++.++|.++-      +.     .........-.....+|.+++ ...++..-|.
T Consensus       321 ~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidS  399 (638)
T 3sbq_A          321 VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDS  399 (638)
T ss_dssp             ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTT
T ss_pred             CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecc
Confidence            334456788999999988765 5788999998631      11     001011111223455666544 6777888889


Q ss_pred             eEEEEECCCC----------ceeEEecCCCCEEEEEE------cCCCcEEEEe----CCCc----------EEEEECCC
Q 024676          169 GVRLWDARSG----------KIVQTLETKSPVTSAEV------SRDGRYITTA----DGSS----------VKFWDANH  217 (264)
Q Consensus       169 ~v~iwd~~~~----------~~~~~~~~~~~v~~~~~------s~~~~~l~~~----~~~~----------i~iwd~~~  217 (264)
                      +|--|++.+.          ..+..+..+..+--+..      .|+|++|++.    -|+.          -++.|+..
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            9999998753          34555555555554544      4788888764    2443          36778754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.18  E-value=4.1  Score=31.20  Aligned_cols=137  Identities=9%  Similarity=-0.046  Sum_probs=68.8

Q ss_pred             CCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCe--------EEEEEECCCCCEEEEeeCCCcEEEeeCCC
Q 024676           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI--------VRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (264)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~s~~~d~~i~~~d~~~  133 (264)
                      ..+..++|+|++.+-+.  .++.+.--+..+.....=+.....        ...+-++|++.+.++  .|+.|.-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            36678999999886554  566544334333111000001112        257889999987666  668887776533


Q ss_pred             CCCC-C----eEeccCC-CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCcee------EEec-CC-CCEEEEEEcCCC
Q 024676          134 PDAP-P----REVGNSS-GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV------QTLE-TK-SPVTSAEVSRDG  199 (264)
Q Consensus       134 ~~~~-~----~~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~------~~~~-~~-~~v~~~~~s~~~  199 (264)
                      .... .    ..++... ..+..+.+.| ++.+.+..  |+.+.-+...++...      ..+. .. ..-.-+.++|++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             CCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            2211 0    1111111 2456666555 44555544  466543333322210      1111 11 223446688888


Q ss_pred             cEEEEe
Q 024676          200 RYITTA  205 (264)
Q Consensus       200 ~~l~~~  205 (264)
                      .+.+..
T Consensus       194 ~l~~v~  199 (236)
T 1tl2_A          194 TLFGVQ  199 (236)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            877666

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.00  E-value=5.6  Score=32.53  Aligned_cols=145  Identities=12%  Similarity=0.061  Sum_probs=79.2

Q ss_pred             cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEE--Ee-----ecCCeEEEEEECCC---CCEEEEe---eCCCcEE
Q 024676           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SF-----EHKHIVRACAFSED---THLLLTG---GFEKILR  127 (264)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~-----~~~~~v~~~~~~~~---~~~l~s~---~~d~~i~  127 (264)
                      -..-+.++|.||+.++++-...|.|++++..++....  .+     ........++++|+   +..|+..   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            3456899999999988887668999999866554322  12     12345789999995   4455442   2334455


Q ss_pred             EeeCCCCC-----C-CCe----Eecc-CCCCeEEEEEecCCCeEEEEee------------CCCeEEEEECCCC------
Q 024676          128 IFDLNRPD-----A-PPR----EVGN-SSGSIRTVAWLHSDQTILSSCT------------DSGGVRLWDARSG------  178 (264)
Q Consensus       128 ~~d~~~~~-----~-~~~----~~~~-~~~~i~~~~~~~~~~~~~~~~~------------~d~~v~iwd~~~~------  178 (264)
                      -|.+....     . ..+    .+.. .......+.|.+++..+++.+.            ..+.|.=.+....      
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP  190 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP  190 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence            55554311     1 011    1111 1112334677776654444332            1234444454422      


Q ss_pred             ---ceeEEecCCCCEEEEEEcCCCcEEEEeC
Q 024676          179 ---KIVQTLETKSPVTSAEVSRDGRYITTAD  206 (264)
Q Consensus       179 ---~~~~~~~~~~~v~~~~~s~~~~~l~~~~  206 (264)
                         ..+....+ .....++|+|+|.+.++-.
T Consensus       191 f~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          191 FPGSPVYSYGH-RNVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             STTCCEEEBCC-SBCCEEEECTTCCEEEEEC
T ss_pred             CCCCeEEeeCC-CCcceEEECCCCCEEEEec
Confidence               12333333 3455789999988877643

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.87  E-value=11  Score=34.12  Aligned_cols=227  Identities=9%  Similarity=-0.003  Sum_probs=108.4

Q ss_pred             CCCeEEEEE-eCCC----CcEEEeCCCCceEE-eeeC-CcC------CEEEEEECCCCcEEEEe----------cCCCeE
Q 024676           29 PDGFFLVSA-SKDS----SPMLRNGETGDWIG-TFEG-HKG------AVWSCCLDANALFSASG----------SADFTA   85 (264)
Q Consensus        29 ~~g~~l~t~-s~d~----~v~i~~~~~~~~~~-~~~~-H~~------~V~~v~~~~~~~~l~s~----------s~D~~v   85 (264)
                      |++++++.+ |..|    .++++|+.+++++. .|.. -+.      .-..++|..+..++++.          +....|
T Consensus       139 ~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v  218 (711)
T 4hvt_A          139 QNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSL  218 (711)
T ss_dssp             SSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEE
T ss_pred             CCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEE
Confidence            577655444 3333    47889999998763 2330 001      00223666444454432          223689


Q ss_pred             EEEeCCCCc--EEEEee--cCCeEEEEEECCCCC-----EEEEeeC---CCcEEEeeCCCCCCCCeEeccCCCCeEEEEE
Q 024676           86 KLWDALTGD--EKHSFE--HKHIVRACAFSEDTH-----LLLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (264)
Q Consensus        86 ~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~-----~l~s~~~---d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  153 (264)
                      +.|...+..  -...++  ....-.....+++++     .+++.+.   ...+.+.++..+......+...... . +..
T Consensus       219 ~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~  296 (711)
T 4hvt_A          219 YIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-T-LQG  296 (711)
T ss_dssp             EEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC-E-EEE
T ss_pred             EEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc-e-Eee
Confidence            999887653  223333  222223444566665     3444432   2445555654322211222111111 1 122


Q ss_pred             ecCCCeEEE-Ee---------eCCCeEEEEECCCCc-------eeEE-ecC--CCCEEEEEEcCCCcEEEEeCCC--cEE
Q 024676          154 LHSDQTILS-SC---------TDSGGVRLWDARSGK-------IVQT-LET--KSPVTSAEVSRDGRYITTADGS--SVK  211 (264)
Q Consensus       154 ~~~~~~~~~-~~---------~~d~~v~iwd~~~~~-------~~~~-~~~--~~~v~~~~~s~~~~~l~~~~~~--~i~  211 (264)
                      .+. +.+++ +.         ...+.|-..|+.++.       .... +..  ...+..+.+.++..+++...++  .+.
T Consensus       297 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~  375 (711)
T 4hvt_A          297 SFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVV  375 (711)
T ss_dssp             EET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEE
T ss_pred             eEC-CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEE
Confidence            333 34433 21         134678888887642       1122 322  3357788888875555555454  577


Q ss_pred             EEECCCce-eeeE-EecCCC-Cc-eeeEcCCCCCEEEEecC---CCeEEEEEcC
Q 024676          212 FWDANHFG-LVKG-YNMPCN-TE-SASLEPKLGNIFIAGGE---DMWVHVFDFH  258 (264)
Q Consensus       212 iwd~~~~~-~~~~-~~~~~~-~~-~~~~~~~~~~~~~~gs~---d~~v~vwd~~  258 (264)
                      ++|+.+++ .++. +..+.. .. .....+..+.++++.+.   =..++.+|+.
T Consensus       376 ~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          376 TFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            78876553 2333 434321 11 12223333455555443   3456666654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.76  E-value=11  Score=33.95  Aligned_cols=188  Identities=12%  Similarity=0.077  Sum_probs=88.8

Q ss_pred             CCCcEEEEecCC----CeEEEEeCCCCcEEEEe-e-------cCCeEEEEEECC-CCCEEEEeeCCC------cEEEeeC
Q 024676           71 ANALFSASGSAD----FTAKLWDALTGDEKHSF-E-------HKHIVRACAFSE-DTHLLLTGGFEK------ILRIFDL  131 (264)
Q Consensus        71 ~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~-~-------~~~~v~~~~~~~-~~~~l~s~~~d~------~i~~~d~  131 (264)
                      .++..++.|+.+    ..+.++|..++.-.... .       ....-.+++..+ ++++++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            345555666643    35777887766422111 1       111112223333 677777777543      3667887


Q ss_pred             CCCCCCCeEeccC--CCCeEEEEEecCCCeEEEEeeCCC-eEEEEECCCCceeEEec------CCCCEEEEEEcCC-CcE
Q 024676          132 NRPDAPPREVGNS--SGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLE------TKSPVTSAEVSRD-GRY  201 (264)
Q Consensus       132 ~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~------~~~~v~~~~~s~~-~~~  201 (264)
                      .+.+.  ......  .-.-.+.+...++..++.+|.... .+.+||..+.+-...-.      .......+.+..+ +++
T Consensus       476 ~t~~W--~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREW--SMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEE--EECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcE--EECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            65432  221111  111122222234444444433222 68999998876432111      1111222444544 555


Q ss_pred             EEE-eC--C-----CcEEEEECCCcee-----eeEE-ecC-CC-C-ceeeEcCCCCCEEEEecCC--------CeEEEEE
Q 024676          202 ITT-AD--G-----SSVKFWDANHFGL-----VKGY-NMP-CN-T-ESASLEPKLGNIFIAGGED--------MWVHVFD  256 (264)
Q Consensus       202 l~~-~~--~-----~~i~iwd~~~~~~-----~~~~-~~~-~~-~-~~~~~~~~~~~~~~~gs~d--------~~v~vwd  256 (264)
                      ++. +.  +     ..+..||+.+..-     .... ..+ .. . ....... ++.+++.||.+        ..+.+||
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT-PRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE-TTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC-CCEEEEECCccCCCCCCCCCeEEEEE
Confidence            444 32  1     3588899877651     1111 111 11 1 1122221 26788888853        4588999


Q ss_pred             cCcce
Q 024676          257 FHTGE  261 (264)
Q Consensus       257 ~~~g~  261 (264)
                      ..+.+
T Consensus       633 ~~t~~  637 (695)
T 2zwa_A          633 PLSET  637 (695)
T ss_dssp             TTTTE
T ss_pred             CCCCe
Confidence            87653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.67  E-value=7.8  Score=30.71  Aligned_cols=177  Identities=15%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             EEEecCCCeEEEEeCCCCcEEE-EeecCC-eEEEEEECCCCCEEEEeeC----CC-------cEEEeeCCCCCCCCeEec
Q 024676           76 SASGSADFTAKLWDALTGDEKH-SFEHKH-IVRACAFSEDTHLLLTGGF----EK-------ILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        76 l~s~s~D~~v~iwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~l~s~~~----d~-------~i~~~d~~~~~~~~~~~~  142 (264)
                      ++.|+.  .+..||..+++-.. ...... .........++++++.|+.    ++       .+..||..+.+.  ....
T Consensus        19 ~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~   94 (318)
T 2woz_A           19 LLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGLP   94 (318)
T ss_dssp             EEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE--EECS
T ss_pred             hhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE--EECC
Confidence            344443  37788887765222 111111 1122233556778887773    11       156777765432  2211


Q ss_pred             c--CCCCeEEEEEecCCCeEEEEeeCC------CeEEEEECCCCceeEEecCCCCE--EEEEEcCCCcEEEE-eC--C--
Q 024676          143 N--SSGSIRTVAWLHSDQTILSSCTDS------GGVRLWDARSGKIVQTLETKSPV--TSAEVSRDGRYITT-AD--G--  207 (264)
Q Consensus       143 ~--~~~~i~~~~~~~~~~~~~~~~~~d------~~v~iwd~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~-~~--~--  207 (264)
                      .  ..-.-.+++.. ++..+++++...      ..+.+||+.+.+-...-....+.  .+++. .++++++. +.  +  
T Consensus        95 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           95 PLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred             CCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence            1  11111122222 344444444331      24788899887643322211111  12222 35555443 32  1  


Q ss_pred             --CcEEEEECCCceeeeEEecCCCCc--eeeEcCCCCCEEEEecCC-----CeEEEEEcCcc
Q 024676          208 --SSVKFWDANHFGLVKGYNMPCNTE--SASLEPKLGNIFIAGGED-----MWVHVFDFHTG  260 (264)
Q Consensus       208 --~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gs~d-----~~v~vwd~~~g  260 (264)
                        ..+.+||..+.+=...-..+....  .....  .+++++.||.+     ..+.+||..+.
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence              358899987753211111221111  12222  46788888754     34677887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.58  E-value=8.9  Score=31.28  Aligned_cols=223  Identities=12%  Similarity=0.073  Sum_probs=114.2

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc-eEEeee---CCcCCEEEEEECCC----CcEEEEecC---C---
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFE---GHKGAVWSCCLDAN----ALFSASGSA---D---   82 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~-~~~~~~---~H~~~V~~v~~~~~----~~~l~s~s~---D---   82 (264)
                      ..-.+|+|.|   +|++++ +..++.|++++ .+++ .+..+.   .-......++++|+    +.+.++-+.   +   
T Consensus        29 ~~P~~ia~~p---dG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLG---GGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEE---TTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcC---CCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            3456899996   888554 56668888886 3454 222221   12345788999997    444444332   3   


Q ss_pred             -CeEEEEeCCCC--c-----EE-EEee--cCCeEEEEEECCCCCEEEEeeC-------------CCcEEEeeCCCCCCC-
Q 024676           83 -FTAKLWDALTG--D-----EK-HSFE--HKHIVRACAFSEDTHLLLTGGF-------------EKILRIFDLNRPDAP-  137 (264)
Q Consensus        83 -~~v~iwd~~~~--~-----~~-~~~~--~~~~v~~~~~~~~~~~l~s~~~-------------d~~i~~~d~~~~~~~-  137 (264)
                       ..|..|+....  .     .+ ..+.  ..+....+.|.|++.+.++.+.             .+.|.-++.+. +.. 
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~  182 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPA  182 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCT
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCC
Confidence             45666665543  1     11 1122  1223467899999987776432             13455555432 110 


Q ss_pred             ------CeE-eccCCCCeEEEEEecCCCeEEEEeeCCC---eEEEEECCC----------------CceeEEe-cCCCCE
Q 024676          138 ------PRE-VGNSSGSIRTVAWLHSDQTILSSCTDSG---GVRLWDARS----------------GKIVQTL-ETKSPV  190 (264)
Q Consensus       138 ------~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~d~---~v~iwd~~~----------------~~~~~~~-~~~~~v  190 (264)
                            ... ...+. ....++|.+.++.+.++-...+   .|.+...-.                ..++..+ ..+...
T Consensus       183 ~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap  261 (354)
T 3a9g_A          183 DNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP  261 (354)
T ss_dssp             TSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred             CCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence                  011 11111 2345677774455555433211   244432111                0123333 234457


Q ss_pred             EEEEEc-------CCCcEEEEeC-CCcEEEEECCCc-eee--eEEec--CCCCceeeEcCCCCCEEEEec
Q 024676          191 TSAEVS-------RDGRYITTAD-GSSVKFWDANHF-GLV--KGYNM--PCNTESASLEPKLGNIFIAGG  247 (264)
Q Consensus       191 ~~~~~s-------~~~~~l~~~~-~~~i~iwd~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~~~gs  247 (264)
                      ..+++.       .+|.++++.- ++.|...++... +..  ..+-.  ...+..+.+.++ |.++++..
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD-G~lyv~~~  330 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD-GGILISTS  330 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT-SCEEEEEC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC-CcEEEEEe
Confidence            778873       4667766654 567888887753 222  22211  123455666664 67666653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.93  E-value=6.4  Score=37.00  Aligned_cols=38  Identities=18%  Similarity=0.088  Sum_probs=32.4

Q ss_pred             CEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee
Q 024676           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  100 (264)
                      .+.+++..++..++.|-+.|+++|||++.++.++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677777888899999999999999999998877653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.60  E-value=16  Score=33.06  Aligned_cols=222  Identities=11%  Similarity=0.073  Sum_probs=114.3

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee--eC----CcCCEEEEEECCCCcEEEEecCCCeEEEEeCC
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EG----HKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~--~~----H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~   91 (264)
                      .|.++.-.+   +|+.-+ |+ ++-+..++..++++....  ..    ....|.++...+++.+-+.....| +..+|..
T Consensus       374 ~v~~i~~d~---~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~G-l~~~~~~  447 (758)
T 3ott_A          374 RIRHIYEDK---EQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGG-IFVVDKH  447 (758)
T ss_dssp             CEEEEEECT---TSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSC-EEEEEHH
T ss_pred             ceEEEEECC---CCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCc-eEEEccc
Confidence            366665542   555433 34 345778888877654321  11    234688888888876655333334 5666643


Q ss_pred             C-----CcEE---EEee-----cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc----CCCCeEEEEEe
Q 024676           92 T-----GDEK---HSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN----SSGSIRTVAWL  154 (264)
Q Consensus        92 ~-----~~~~---~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~----~~~~i~~~~~~  154 (264)
                      +     ....   ..+.     ....|..+..++++.+.+.++..+-+..+|..+.+.  .....    ....+.++...
T Consensus       448 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~--~~~~~~~~~~~~~~~~i~~d  525 (758)
T 3ott_A          448 KLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV--TKLFADELTGEKSPNYLLCD  525 (758)
T ss_dssp             HHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE--EEECTTTSCGGGCEEEEEEC
T ss_pred             cccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce--EEecCCCcCCCcccceEEEC
Confidence            2     1111   1111     123588898899998877434445577788764432  11111    12345555443


Q ss_pred             cCCCeEEEEeeCCCeEEEEECCCCceeEE-ec--CCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCC-C
Q 024676          155 HSDQTILSSCTDSGGVRLWDARSGKIVQT-LE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-T  230 (264)
Q Consensus       155 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~--~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~-~  230 (264)
                      . ++.+-++ +. +.+..+|.++++...- ..  ....+.++... +|.+.+++.. .+..+|..+.+. ..|..+.. .
T Consensus       526 ~-~g~lWig-t~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi~t~~-Gl~~~~~~~~~~-~~~~~~~~~~  599 (758)
T 3ott_A          526 E-DGLLWVG-FH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWVSTTN-GLWIIDRKTMDA-RQQNMTNKRF  599 (758)
T ss_dssp             T-TSCEEEE-ET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEEEESS-CEEEEETTTCCE-EEC--CCCCC
T ss_pred             C-CCCEEEE-ec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEEECCC-CeEEEcCCCcee-EEecCCCCce
Confidence            3 3444333 34 4688899876653221 11  12457777664 6776666644 577778876543 33333222 2


Q ss_pred             ceeeEcCCCCCEEEEecCCCeEEE
Q 024676          231 ESASLEPKLGNIFIAGGEDMWVHV  254 (264)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d~~v~v  254 (264)
                      ....+...+| .+.-|+.+|.+++
T Consensus       600 ~~~~~~~~~G-~l~fG~~~Gl~~f  622 (758)
T 3ott_A          600 TSLLFDPKED-CVYLGGADGFGIS  622 (758)
T ss_dssp             SEEEEETTTT-EEEEECBSEEEEE
T ss_pred             eeeEEECCCC-cEEEecCCceEEE
Confidence            2233333334 4566667775544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=87.48  E-value=10  Score=30.85  Aligned_cols=141  Identities=9%  Similarity=0.027  Sum_probs=75.3

Q ss_pred             CEEEEEECCCCcEEEEecCCCeEEEEeCCCCc-EEEEee----cCCeEEEEEECCC---CCEEEEeeC----C----CcE
Q 024676           63 AVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFE----HKHIVRACAFSED---THLLLTGGF----E----KIL  126 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~----~~~~v~~~~~~~~---~~~l~s~~~----d----~~i  126 (264)
                      .-+.++|.+++.++++ ..++.|+++| .++. .+..+.    .......++++|+   +..|+.+..    +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4578999999986665 4458899887 3443 222211    1245789999997   555554432    2    456


Q ss_pred             EEeeCCCCC--C-----CCeEecc-CCCCeEEEEEecCCCeEEEEeeC------------CCeEEEEECCCC--------
Q 024676          127 RIFDLNRPD--A-----PPREVGN-SSGSIRTVAWLHSDQTILSSCTD------------SGGVRLWDARSG--------  178 (264)
Q Consensus       127 ~~~d~~~~~--~-----~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~------------d~~v~iwd~~~~--------  178 (264)
                      ..|+.....  .     ....... .......+++.+++..+++.+..            .+.|.-+|....        
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            666654331  0     0111111 11123457777766534433321            135555555432        


Q ss_pred             -ceeEEecCCCCEEEEEEcC-CCcEEEEeC
Q 024676          179 -KIVQTLETKSPVTSAEVSR-DGRYITTAD  206 (264)
Q Consensus       179 -~~~~~~~~~~~v~~~~~s~-~~~~l~~~~  206 (264)
                       ..+..... .....++++| ++.++++-.
T Consensus       188 ~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          188 NSPIWSYGH-RNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             TCCEEEECC-SCCCEEEECTTTCCEEEEEC
T ss_pred             CCcEEEEcc-CCcceEEEeCCCCCEEEEec
Confidence             12333333 3355789999 677776643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.14  E-value=10  Score=33.32  Aligned_cols=84  Identities=11%  Similarity=-0.012  Sum_probs=57.2

Q ss_pred             CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce-------------eEEecCCCCEEEEEEcCCCcEEEEe-CCCcEEE
Q 024676          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-------------VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKF  212 (264)
Q Consensus       147 ~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-------------~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~i  212 (264)
                      +...+...|++.++++++--+.++.++|.++...             ....+..-...-.+|.++|...++- -|..|--
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            3455677899999999888888999999985211             2223333345667899999555555 4789999


Q ss_pred             EECCCc----------eeeeEEecCCCC
Q 024676          213 WDANHF----------GLVKGYNMPCNT  230 (264)
Q Consensus       213 wd~~~~----------~~~~~~~~~~~~  230 (264)
                      |++..-          ..+.....+.++
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~Yqp  431 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQP  431 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred             EeccHHHHHhcCccCCeeeeccccccCC
Confidence            998652          345666655444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=84.72  E-value=12  Score=28.72  Aligned_cols=102  Identities=14%  Similarity=0.009  Sum_probs=59.6

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce---E---Eeee--CCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---I---GTFE--GHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~---~---~~~~--~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      -..+..++|+|   +|.+-+.  .++.+.-.+..+...   .   ..+.  +-.. -.++.|.+++.+-++  .|+.|.-
T Consensus        40 w~~~~~laf~P---~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           40 WSNFKFLFLSP---GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYK  111 (236)
T ss_dssp             CTTCSEEEECT---TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEE
T ss_pred             cccceeEEECC---CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEE
Confidence            34677999997   7875444  666655555544211   1   1111  1111 367889999987666  5788877


Q ss_pred             EeCCCCcEE-----EEeecC---CeEEEEEECCCCCEEEEeeCCCcEE
Q 024676           88 WDALTGDEK-----HSFEHK---HIVRACAFSEDTHLLLTGGFEKILR  127 (264)
Q Consensus        88 wd~~~~~~~-----~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~  127 (264)
                      ++-.+....     .+.-..   +.+..+.+.|++.+.+..  |+.+.
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            775332110     011011   357889999999866655  77654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=82.09  E-value=19  Score=29.24  Aligned_cols=230  Identities=10%  Similarity=0.044  Sum_probs=113.7

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce---EEee----eCCcCCEEEEEECCC----CcEEEEecC-----
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---IGTF----EGHKGAVWSCCLDAN----ALFSASGSA-----   81 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~---~~~~----~~H~~~V~~v~~~~~----~~~l~s~s~-----   81 (264)
                      .-++|+|.|   +|++|..+...+.|++++.. +..   +..+    ..-.+....++++|+    +.+.++-+.     
T Consensus        19 ~P~~i~~~p---dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           19 HPWALAFLP---DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SEEEEEECS---TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CcEEEEEcC---CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            346899986   88834455677888888753 332   1111    112345688999995    444444322     


Q ss_pred             --CCeEEEEeCCCC--c---EEEEe---e----cCCeEEEEEECCCCCEEEEeeC-------------CCcEEEeeCCCC
Q 024676           82 --DFTAKLWDALTG--D---EKHSF---E----HKHIVRACAFSEDTHLLLTGGF-------------EKILRIFDLNRP  134 (264)
Q Consensus        82 --D~~v~iwd~~~~--~---~~~~~---~----~~~~v~~~~~~~~~~~l~s~~~-------------d~~i~~~d~~~~  134 (264)
                        ...|..|+....  .   ....+   .    ..+.-..+.|.|++.+.++.+.             .+.|.-++.+..
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              124544555432  1   11111   1    1122457899999976665433             235655665422


Q ss_pred             CC-----------CCeEe-ccCCCCeEEEEEecCCCeEEEEeeC-CC--eEEEEECCCC---------------------
Q 024676          135 DA-----------PPREV-GNSSGSIRTVAWLHSDQTILSSCTD-SG--GVRLWDARSG---------------------  178 (264)
Q Consensus       135 ~~-----------~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~-d~--~v~iwd~~~~---------------------  178 (264)
                      -.           ..+.. ..+ .....++|.+..+.+.++-.. ++  .|.+.  ..+                     
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i--~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIP--QKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECC--CTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEe--ccCCcCCCCCccCCCCCCCCccCc
Confidence            00           01111 111 235667787755555554322 11  23221  111                     


Q ss_pred             ----------ceeEEecCCCCEEEEEEcC-------CCcEEEEeC-CCcEEEEECCCceeeeEEec----CCCCceeeEc
Q 024676          179 ----------KIVQTLETKSPVTSAEVSR-------DGRYITTAD-GSSVKFWDANHFGLVKGYNM----PCNTESASLE  236 (264)
Q Consensus       179 ----------~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~  236 (264)
                                ..+..+..+..+..+.+.+       +|.++++.. .+.|...++...+.+....+    ...+..+.+.
T Consensus       252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~  331 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG  331 (353)
T ss_dssp             CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred             ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence                      1122333344566677753       466666653 56777777765544333221    1244556666


Q ss_pred             CCCCCEEEE-ecCCCeEEEEEc
Q 024676          237 PKLGNIFIA-GGEDMWVHVFDF  257 (264)
Q Consensus       237 ~~~~~~~~~-gs~d~~v~vwd~  257 (264)
                      ++ |.++++ -..++  +||.+
T Consensus       332 pd-G~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          332 PD-GYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             TT-SCEEEEECSTTE--EEEEE
T ss_pred             CC-CcEEEEEeCCCC--EEEEE
Confidence            64 666664 33444  44443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (220), Expect = 2e-21
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 3/178 (1%)

Query: 40  DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99
           D++  L + ETG    TF GH G V S  L  +     SG+ D +AKLWD   G  + +F
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 100 E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158
             H+  + A  F  + +   TG  +   R+FDL           ++     T        
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 159 TILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG-SSVKFWD 214
            +L +  D     +WDA        L    + V+   V+ DG  + T    S +K W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 5e-18
 Identities = 42/258 (16%), Positives = 84/258 (32%), Gaps = 11/258 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH   +  + +     D   LVSAS+D   ++ +  T + +         V +C    + 
Sbjct: 53  GHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHK---HIVRACAFSEDTHLLLTGGFEKILRIFD 130
            + A G  D    +++  T +       +   H              +            
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSP 189
                         +G + +++     +  +S   D+   +LWD R G   QT    +S 
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-SAKLWDVREGMCRQTFTGHESD 228

Query: 190 VTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPCNTESASLE-PKLGNIFIAG 246
           + +     +G    T   D +   F       L+   +        S+   K G + +AG
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 247 GEDMWVHVFDFHTGEQIG 264
            +D   +V+D    ++ G
Sbjct: 289 YDDFNCNVWDALKADRAG 306

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 2e-16
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 5/166 (3%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
               +    D+    + PD    VS + D+S  L +   G    TF GH+  + + C   
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRI 128
           N    A+GS D T +L+D     E  ++ H +I   + + +FS+   LLL G  +    +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +D  + D     +      +  +     D   +++ +    +++W+
Sbjct: 297 WDALKAD-RAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (202), Expect = 5e-19
 Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 25/215 (11%)

Query: 23  FYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD 82
               I P+G  +VSAS+D +  +   +TG  + TF GH+  V     + +    AS S D
Sbjct: 105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164

Query: 83  FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDT--------------------HLLLTGG 121
            T ++W   T + K    EH+H+V   +++ ++                      LL+G 
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
            +K ++++D          +      +R V +    + ILS   D   +R+WD ++ + +
Sbjct: 225 RDKTIKMWD-VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-KTLRVWDYKNKRCM 282

Query: 182 QTLET-KSPVTSAEVSRDGRYITTADG-SSVKFWD 214
           +TL   +  VTS +  +   Y+ T     +VK W+
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 2e-17
 Identities = 54/309 (17%), Positives = 101/309 (32%), Gaps = 72/309 (23%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-- 71
           GH  PV  + + P       +VSAS+D++  + + ETGD+  T +GH  +V     D   
Sbjct: 15  GHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 72  ----------------------------------------NALFSASGSADFTAKLWDAL 91
                                                   N     S S D T K+W+  
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 92  TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG---- 146
           TG    +F  H+  VR    ++D  L+ +   ++ +R++ +   +       +       
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 147 --------------SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVT 191
                         +             L S +    +++WD  +G  + TL    + V 
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251

Query: 192 SAEVSRDGRYI-TTADGSSVKFWDANHFGLV---KGYNMPCNTESASLEPKLGNIFIAGG 247
                  G++I + AD  +++ WD  +   +     +       S           + G 
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT--SLDFHKT-APYVVTGS 308

Query: 248 EDMWVHVFD 256
            D  V V++
Sbjct: 309 VDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 35/273 (12%), Positives = 82/273 (30%), Gaps = 67/273 (24%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRA------- 107
              GH+  V             S S D T K+WD  TGD + + + H   V+        
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 108 -----------------------------------CAFSEDTHLLLTGGFEKILRIFDLN 132
                                               +   +   +++   +K ++++++ 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE------- 185
                    G+       +   + D T+++SC++   VR+W   + +    L        
Sbjct: 132 TGYCVKTFTGHR--EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 186 --------------TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT 230
                           +   + +  + G ++ +     ++K WD +    +       N 
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
               L    G   ++  +D  + V+D+     +
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 1e-17
 Identities = 62/301 (20%), Positives = 105/301 (34%), Gaps = 48/301 (15%)

Query: 2   DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK 61
            + ++  P V  GH   V+          G  +VS S D++  + +  TG  + T  GH 
Sbjct: 2   RRGELKSPKVLKGHDDHVITCL----QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 62  GAVWSCCLDANA--------------------------------------LFSASGSADF 83
           G VWS  +  N                                           SGS D 
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 84  TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
           T ++WD  TG   H          C   +    +++G ++ +++++D          +  
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-VVSGAYDFMVKVWDPE----TETCLHT 172

Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT 203
             G    V  L  D   + S +    +R+WD  +G  + TL     +TS    +D   ++
Sbjct: 173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 232

Query: 204 TADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262
               S+VK WD      ++    P     + +      N  I   +D  V ++D  TGE 
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292

Query: 263 I 263
           I
Sbjct: 293 I 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 7e-14
 Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 15/193 (7%)

Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
            +VS + D    + + ET   + T +GH   V+S   D   +   SGS D + ++WD  T
Sbjct: 149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV--VSGSLDTSIRVWDVET 206

Query: 93  GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA 152
           G+  H+      +         ++L++G  +  ++I+D+          G +        
Sbjct: 207 GNCIHTLTGHQSL-TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 265

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEVSRDGRYITTA- 205
              +   +++S  D G V+LWD ++G+ ++ L T         V     S          
Sbjct: 266 LQFNKNFVITSSDD-GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 206 -DGS---SVKFWD 214
            +G+    +   D
Sbjct: 325 RNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-----EGHKGAVW 65
           +             + +  +  F++++S D +  L + +TG++I         G  G VW
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309

Query: 66  SCCLDANALFSASGSADFTA----KLWD 89
                   L  A GS + T      + D
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 6e-14
 Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 28/191 (14%)

Query: 51  GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--------HK 102
           G    T     G         +  + A+GS D   ++WD+ TG      +        HK
Sbjct: 195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254

Query: 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-----------NSSGSIRTV 151
             V +  F+ D   +++G  ++ +++++L   +                       + +V
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSR------DGRYITT 204
           A   +D+ ILS   D  GV  WD +SG  +  L+  ++ V S  V+       +     T
Sbjct: 315 ATTQNDEYILSGSKD-RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 205 ADG-SSVKFWD 214
             G    + W 
Sbjct: 374 GSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 5e-13
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 26/173 (15%)

Query: 29  PDGFFLVSASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSCCLDANALFSASGSA 81
            DG ++ + S D +  + + ETG  +   +       GHK +V+S     +     SGS 
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 82  DFTAKLWDALTGDEK-------------HSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           D + KLW+    + K                 HK  V + A +++   +L+G  ++ +  
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAW-----LHSDQTILSSCTDSGGVRLWDAR 176
           +D  +   P   +     S+ +VA      L  +  + ++ +     R+W  +
Sbjct: 335 WDK-KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 4e-12
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------------WIGTFEGHK 61
           GH   V  + ++    DG  +VS S D S  L N +  +               T+ GHK
Sbjct: 252 GHKDSVYSVVFTR---DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 62  GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA------FSEDT 114
             V S     N  +  SGS D     WD  +G+     + H++ V + A         + 
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 115 HLLLTGGFEKILRIFDLNR 133
           ++  TG  +   RI+   +
Sbjct: 369 NVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 5e-10
 Identities = 47/301 (15%), Positives = 94/301 (31%), Gaps = 45/301 (14%)

Query: 3   KRKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-- 59
            R++ V L     H+  V  + +S    DG +L +   + +  +     G  +       
Sbjct: 48  PREIDVELHKSLDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDS 103

Query: 60  ----------------HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH 103
                               + S C   +  F A+G+ D   ++WD          +   
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163
                     +   L  G      +   +          +    + TVA    D   +++
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDR-TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 164 CTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTA-DGSSVKFWD 214
            +    VR+WD+ +G +V+ L++        K  V S   +RDG+ + +     SVK W+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 215 ANHFGLVKGYNMPCNTESASLEPKL------------GNIFIAGGEDMWVHVFDFHTGEQ 262
             +         P +                          ++G +D  V  +D  +G  
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

Query: 263 I 263
           +
Sbjct: 343 L 343

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
             GH   V+ +  +    +  +++S SKD   +  + ++G+ +   +GH+ +V S  +  
Sbjct: 304 YIGHKDFVLSVATTQ---NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

Query: 72  NALFS------ASGSADFTAKLWD 89
            +         A+GS D  A++W 
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 43/265 (16%), Positives = 76/265 (28%), Gaps = 43/265 (16%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL 74
           H     +   +   P   FL+     S P     +T D+   +           L     
Sbjct: 1   HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVEL----- 55

Query: 75  FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-----------FE 123
                                  S +H  +V    FS D   L TG              
Sbjct: 56  ---------------------HKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGS 94

Query: 124 KILRIFDLNRPDAPPREVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178
            + R+ D +  +  P  +  SS       IR+V +    + + +   D            
Sbjct: 95  LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 154

Query: 179 KIVQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMPCNTESASLEP 237
            ++     +  + S +    G  + +  G  +V+ WD          ++     + ++ P
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214

Query: 238 KLGNIFIAGGEDMWVHVFDFHTGEQ 262
             G    AG  D  V V+D  TG  
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFL 239

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-12
 Identities = 34/255 (13%), Positives = 83/255 (32%), Gaps = 12/255 (4%)

Query: 10  LVCH-GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           + C    S+ V  L       D   +VS  +D++  + +  T +      GH G+V    
Sbjct: 8   IHCRSETSKGVYCL-----QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
            D   + +    +  +      +   E  +    H         +  +++T   ++ + +
Sbjct: 63  YDERVIIT---GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +D               G    V  +  D   + S +    +++W+  + + V+TL    
Sbjct: 120 WD-MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              +    RD   ++ +  ++++ WD      ++                     ++G  
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAY 236

Query: 249 DMWVHVFDFHTGEQI 263
           D  + V+D       
Sbjct: 237 DGKIKVWDLVAALDP 251

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 5e-08
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 18/172 (10%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFS 111
                 GH+ AV     D   + SASG  D T K+W+  T +   +   HK  +    + 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187

Query: 112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           +   L+++G  +  +R++D+         +    G    V  +  D   + S    G ++
Sbjct: 188 D--RLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

Query: 172 LWDARSGKIVQTLETKSPVTSAE--------VSRDGRYI-TTADGSSVKFWD 214
           +WD  +    +       + +          +  D   I +++   ++  WD
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 40  DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
            ++   R       + T   H G V+    D   +   S S D T  +WD
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI--VSSSHDDTILIWD 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 3/138 (2%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
           T  GH  +V + CL     +  +G+ D   +++D++          H   V A  ++   
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG- 64

Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
            +L++G  ++ +R++D+ +        G++S         + +   + + +    + +W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 175 ARSGKIVQTLETKSPVTS 192
                 V     +     
Sbjct: 125 LPKESSVPDHGEEHDYPL 142

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 8/163 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH   V+    + +  +  ++++ + D    + +     ++    GH G VW+       
Sbjct: 10  GHMTSVI----TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH---LLLTGGFEKILRIFD 130
           +   SGS D T ++WD   G   H FE  +    C    +      ++TG  +  L ++ 
Sbjct: 66  IL-VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
           L +  + P         +       +   +         VR  
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 7/186 (3%)

Query: 31  GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90
           G  +VS S D++ ++ +      +    GH   ++S   D       S S D T ++WD 
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

Query: 91  LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150
             G+  ++ +    +       D  L+       I      +          N    +  
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN----LSA 286

Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGS 208
           +   +    IL S ++     +++ RSGK+V          + S                
Sbjct: 287 ITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDG 345

Query: 209 SVKFWD 214
                 
Sbjct: 346 QSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT 203
             S+ T   L  +   + +  D   +R++D+ + K +  L      V + + +  G  ++
Sbjct: 12  MTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 204 TADGSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261
            +   +V+ WD         +    +T      +E K     + G  D  +HV+      
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 262 QI 263
            +
Sbjct: 130 SV 131

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 59.1 bits (141), Expect = 9e-11
 Identities = 21/190 (11%), Positives = 48/190 (25%), Gaps = 21/190 (11%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-------IGTFEGHKGAV 64
               +      +      D   L   S  S     +    ++               G+ 
Sbjct: 171 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 230

Query: 65  WSCCLDANALFSASGSADFTAKLWDALTGDEKHS--------FEHKHIVRACAFSEDTHL 116
               L   ++ S +G  D       +   +                 I       E    
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290

Query: 117 LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176
                 + +L  +D+       R+V     ++  +      +T++    D G +  +   
Sbjct: 291 YQGAPEKGVLLKYDVKT-----RKVTEVKNNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 344

Query: 177 SGKIVQTLET 186
             +  +T+ET
Sbjct: 345 KPEDERTVET 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 17/219 (7%), Positives = 50/219 (22%), Gaps = 18/219 (8%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
               +      F +   P            +  + + E               ++   DA
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA 188

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFE--------HKHIVRACAFSEDTHLLLTGGFE 123
           ++      S        D +  +                           +     G ++
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 124 KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-----DQTILSSCTDSGGVRLWDARSG 178
                   +  +  P +         ++                   + G +  +D ++ 
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308

Query: 179 KIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDAN 216
           K+ +    K+ +T   +S D + +    D   +  +   
Sbjct: 309 KVTE---VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-10
 Identities = 14/79 (17%), Positives = 25/79 (31%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
                  H+  V S        +  S   D     W    G      +    V +C  S 
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316

Query: 113 DTHLLLTGGFEKILRIFDL 131
           D   ++TG  +K   ++++
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 5e-09
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 4/163 (2%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
            +  F+GH        +  +     +G  D T + WD   G +    +    + +  +  
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234

Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172
               L  G     + +  +N+PD            + ++ + +  +  +S+  D   +  
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKD-NLLNA 291

Query: 173 WDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWD 214
           W    G  +   +  S V S ++S D +YI T  G      ++
Sbjct: 292 WRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
            H H   V+ L ++     G + VS  KD+         G  I        +V SC +  
Sbjct: 261 LHLHESCVLSLKFAY---CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV 316

Query: 72  NALFSASGSADFTAKLWD 89
           +  +  +GS D  A +++
Sbjct: 317 DDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 32/256 (12%), Positives = 63/256 (24%), Gaps = 10/256 (3%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-----FEGHKGAVWSCC 68
            H   V  +  S        + +        + +                     + SC 
Sbjct: 49  NHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L  +      G    T  +WD      +   E      AC     +              
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS-SCTDSGGVRLWDARSGKIVQTLETK 187
             +               +        S+      +      VR WD R G+ +Q  +  
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S + S      G ++     SS       +       ++  +   +      G  F++ G
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 248 EDMWVHVFDFHTGEQI 263
           +D  ++ +    G  I
Sbjct: 285 KDNLLNAWRTPYGASI 300

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
             +       D            + ++  H  +V A   S  T  + TGG +  ++++D+
Sbjct: 21  GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79

Query: 132 NRPDAP----PREVGNSSGSIRTVAWLHSDQTILSSC 164
           + P         +  N    IR+   L    T++   
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH 217
           +     R  + + TL     V +  +S   R++ T     VK WD +H
Sbjct: 34  IGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISH 81

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.3 bits (134), Expect = 6e-10
 Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 25/228 (10%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
                 A P+      R V  +  +    DG   V+        ++ G+    +     +
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAAD---DGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           +    +                     W   +   + S     +     F +D     T 
Sbjct: 186 RKGYSAPD---------------VLYFWPHQSPRHEFS----MLYTIARFKDDKQDPATA 226

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
                    DL       +E  + +    T      D   +        +  +D +  K+
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284

Query: 181 VQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMP 227
           ++              + G  +      + +  ++ +    VK   +P
Sbjct: 285 IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 32/276 (11%), Positives = 69/276 (25%), Gaps = 33/276 (11%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG- 59
            +     +  V     R +     SP         + +               +  F   
Sbjct: 73  KNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130

Query: 60  --HKGAVWSCCLDANALFSASGSADFTA-------KLWDALTGDEKHSFEHKHIVRACAF 110
              +            ++    + D +           D  TG    +   ++  R    
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS 190

Query: 111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170
           + D                       P +   +    + T+A    D+   ++     G 
Sbjct: 191 APDVLYFW------------------PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228
              D ++GK              +   S           + +  +D     L+K  N+  
Sbjct: 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH 292

Query: 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG 264
                + + K G+    GG    + VF+  T E++ 
Sbjct: 293 TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 18/234 (7%), Positives = 47/234 (20%), Gaps = 18/234 (7%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDAN-ALFSASGSADFT 84
           +     +++  +  ++  + +  +     +     K    +  +  +        +    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 85  AKLWDALTGDEKHSF-------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137
               D  T              E    + + A S D   +                    
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---------WDARSGKIVQTLETKS 188
                 + G              +     +    L          D ++GK    L  ++
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI 242
                  + D  Y         +F         K       T          ++
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.0 bits (133), Expect = 9e-10
 Identities = 32/276 (11%), Positives = 74/276 (26%), Gaps = 31/276 (11%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDAN 72
              P+    ++    D   +     +    +       W  +   + H G V       +
Sbjct: 6   LVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVR---ACAFSEDTHLLLTGGFEKILRIF 129
           +    +   D  A +W       K +     I R      ++ +      G   +++ I 
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 130 DLNRPDAPPREVGNSSGSIRTV--AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET- 186
              + +              TV     H +  +L++ +     R++ A   ++ +     
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

Query: 187 ------------------KSPVTS-AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP 227
                                V      +   R    +  S+V   DA+    V      
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242

Query: 228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
                A       ++ +A G D +  +F + +    
Sbjct: 243 TLPLLAVTFITESSL-VAAGHDCFPVLFTYDSAAGK 277

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 17/168 (10%), Positives = 36/168 (21%), Gaps = 41/168 (24%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
               +   + L       +   + +   D  P+L   ++     +F G            
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
                   + D  A    +          HK+ V   +                      
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK---------------- 338

Query: 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179
                                   +  +   +    GG+ +WD RS +
Sbjct: 339 ------------------------AKCSQFCTTGMDGGMSIWDVRSLE 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 3e-09
 Identities = 28/219 (12%), Positives = 60/219 (27%), Gaps = 48/219 (21%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH------------ 103
             + H   ++S     +     S S D   K+WD    D ++  +  +            
Sbjct: 9   AGKAHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 104 --IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------SGSIRTVA 152
             +      + +  L+ T  F   L  + + R D   + +              S   + 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 153 WLHSDQT----ILSSCTDSGGVRLWDARS-------------------GKIVQTLETKSP 189
           W  S+       L +    G   +W                       G +   +     
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228
            TS ++S  G   T  +  +V+  + +    +  +    
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH 225

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 47/247 (19%)

Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------------------GETGDWI 54
             HS   +    S        LV+     +  +                     E    +
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 55  GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH-------IVRA 107
            +         S  +    L  A+G  + T ++ +  T    ++FE +H        +R+
Sbjct: 178 ESPMTPSQFATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 108 CAFSEDTHLLLTGG---------------FEKILRIFDLNRPDAPPREVGNSSGSIRTVA 152
             FS    LL                    E+I  +                S  + +++
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTADG 207
           +  S +T+ S+  D G +R WD ++ + + TL       +       V   G  +     
Sbjct: 297 FNDSGETLCSAGWD-GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355

Query: 208 SSVKFWD 214
             VKF  
Sbjct: 356 FDVKFLK 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 41/320 (12%), Positives = 89/320 (27%), Gaps = 77/320 (24%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------GHKGAVWSC 67
            H   +  +          F VS S D    + + +  D     +       HK  +   
Sbjct: 12  AHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 68  CLDANALFS-------ASGSADFTAKLWDALTGDEKHSF-----------EHKHIVRACA 109
            +              A+ S       +     DE                 KH   A  
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 110 FSEDT-----HLLLTGGFEKILRIFDLNRP-----------------DAPPREVGNSSGS 147
           +         H L+    +    I+  +                             S  
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-------SPVTSAEVSRDGR 200
             +V    S++ ++++  ++G V++ +  + + +   E++       + + S + S  G 
Sbjct: 187 ATSVDI--SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 201 YITTADGSSV----KFWDANHFGLVKGYNMPCNTESASLEPKL-------------GNIF 243
            +  A  S+       ++      +   ++P ++  ASL                 G   
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 244 IAGGEDMWVHVFDFHTGEQI 263
            + G D  +  +D  T E+I
Sbjct: 305 CSAGWDGKLRFWDVKTKERI 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 7/114 (6%)

Query: 47  NGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIV 105
              +         H   V S   + +     S   D   + WD  T +   +   H   +
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 334

Query: 106 R----ACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPREVGNSSGSIRTVAW 153
                  A  E    L   G   +  +    R    A   E        R++ W
Sbjct: 335 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 9e-09
 Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 16/226 (7%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE----KHSFEHKHIVRACA 109
           +   +  K  +    +  +       S D +  ++      +      S  +KH +  C 
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
           F ++T L +  G  +   +          + + N+  ++            L + +  G 
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 170 VRLWDARSGKIVQTLETKSPVTSAE--------VSRDGRYITTADGSSVKFWDANHFGLV 221
           + + D R+              + +         +   R I   + S V+++        
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 222 KGYNMPCNTE----SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            G       +      +L PK    +     D  V V  F      
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 7e-06
 Identities = 10/155 (6%), Positives = 43/155 (27%), Gaps = 21/155 (13%)

Query: 81  ADFTAKLWDALTGDEKHSFEHKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLN--- 132
            +   + +     ++ +    +      I       ++         +  + +   +   
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 133 -----------RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
                      R      +  N +  + ++ +       L +    G +  W+ ++ K +
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-SPRHKFLYTAGSDGIISCWNLQTRKKI 286

Query: 182 QTLETKSPVTSAEVSRDGRYITTADGS-SVKFWDA 215
           +     +  +  +++     +  A    + K   A
Sbjct: 287 KNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 8/69 (11%), Positives = 17/69 (24%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
                      V S        F  +  +D     W+  T  +  +F   +       + 
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC 302

Query: 113 DTHLLLTGG 121
             ++L    
Sbjct: 303 SDNILCLAT 311

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 26/210 (12%), Positives = 56/210 (26%), Gaps = 20/210 (9%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
              +  F V+        L +G T +     +    AV    L A+  +      D    
Sbjct: 28  WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVN 86

Query: 87  LWDALTGDE------KHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDL-------- 131
           + D    +       K   E + I  +     +  + +    +     I D         
Sbjct: 87  MIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 146

Query: 132 --NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTLETK 187
              R      +  +    +  +   H     + +  ++G + L D           +  +
Sbjct: 147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 206

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANH 217
             +    +    RY  TA  +  K    + 
Sbjct: 207 RFLHDGGLDGSHRYFITAANARNKLVVIDT 236

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 16/140 (11%)

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190
              P+  P +  N             +     +  D+G + L D  + +I   L+T   V
Sbjct: 14  HVAPEDRPTQQMND---------WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV 64

Query: 191 TSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLE------PKLGNIF 243
             + +S  GRY+        V   D           +   +E+ S+E       +     
Sbjct: 65  HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124

Query: 244 IAGGEDMWVHVFDFHTGEQI 263
                     + D  T E  
Sbjct: 125 AGAYWPPQYVIMDGETLEPK 144

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.1 bits (121), Expect = 4e-08
 Identities = 20/217 (9%), Positives = 45/217 (20%), Gaps = 31/217 (14%)

Query: 27  ITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85
                   L      S+    +          +              A     GS   + 
Sbjct: 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASL 187

Query: 86  KLWDALTGDEKHS-------FEHKHIVRACAFSEDTHLLLTG---------GFEKILRIF 129
              D                       +A   +    L+                     
Sbjct: 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA 247

Query: 130 DLNRPDAPPREVGNSSGSIRTVA--------WLHSDQTILSSCTDSGGVRLWDARSGKIV 181
            ++  ++  +     S   + VA         + + +   S    +       A  G+  
Sbjct: 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307

Query: 182 QTLETKSPVTSAEVSRDGR---YITTADGSSVKFWDA 215
             +       +   ++DG    Y  +A    +  +DA
Sbjct: 308 GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 14/150 (9%), Positives = 29/150 (19%), Gaps = 17/150 (11%)

Query: 75  FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL----------LTGGFEK 124
             A  +      +  A  G           +                        G    
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLG-AFLSLAVAGHSGSDFALASTSFARSAKGKRTD 96

Query: 125 ILRIFDL------NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178
            + +FD          + P     +    +  +    S   +L     S           
Sbjct: 97  YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156

Query: 179 KIVQTLETKSPVTSAEVSRDGRYITTADGS 208
              Q  ++ S       +    Y+ +   S
Sbjct: 157 SDDQLTKSASCFHIHPGAAATHYLGSCPAS 186

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 6e-08
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 2/120 (1%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSED 113
              GH  A+ +    A+     S  A+     WD  TG     F   H  ++     +  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
             L      + +  +          + V N   S      + +D  I  +          
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 30/256 (11%), Positives = 60/256 (23%), Gaps = 6/256 (2%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCL 69
           V +GH++ +  L  S    DG  L SA  +      +  TG     F + H   +     
Sbjct: 7   VRYGHNKAITALSSSA---DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 70  DANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRA--CAFSEDTHLLLTGGFEKILR 127
            +          D    +    +G +        +              +      K + 
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           I+   +    P    +S  ++       +     S            +    IV   E  
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S   S   +       +         +         +       +             G 
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243

Query: 248 EDMWVHVFDFHTGEQI 263
            D  V V++ +     
Sbjct: 244 LDNSVIVWNMNKPSDH 259

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 5e-04
 Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 43  PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--- 99
             + N        ++  H   V       + +  A+GS D +  +W+     +       
Sbjct: 206 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 265

Query: 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
            H           +   +++ G +  ++ +++
Sbjct: 266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.5 bits (111), Expect = 7e-07
 Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 4/141 (2%)

Query: 88  WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS 147
            D L    +H              +D        +   L   DL   +   REV      
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTAD 206
             + A   +             +  +D      ++ +       S  VS DG  +     
Sbjct: 243 YFSTAVNPAKTRA---FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA 299

Query: 207 GSSVKFWDANHFGLVKGYNMP 227
              +  +DA         ++P
Sbjct: 300 LGDLAAYDAETLEKKGQVDLP 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 1/119 (0%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
             S  V+   +     D       +  +  +  + ETG+            +      N 
Sbjct: 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST-AVNP 250

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
             + +  A    + +D             H   +   S D   +  GG    L  +D  
Sbjct: 251 AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 35/292 (11%), Positives = 77/292 (26%), Gaps = 43/292 (14%)

Query: 15  HSRPVVDLFYSP----ITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGA------ 63
               + D   +P    + P G     + +K  S +  +  TG+ +G  +           
Sbjct: 25  KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84

Query: 64  -----------VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
                      +           +          L+DA T   + +FE    +   A++ 
Sbjct: 85  FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144

Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-------------------AW 153
           D   L   G +  +   +              + +                         
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204

Query: 154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS-VKF 212
              D           G+   D  +G++         V     + +          + ++ 
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLES 264

Query: 213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG 264
           +D      +K   +P +  S ++    G+    GG    +  +D  T E+ G
Sbjct: 265 FDLEKNASIKRVPLPHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKG 315

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.2 bits (110), Expect = 7e-07
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITTADGSSVKFWDANHFGL 220
           + ++S  + + D  S K+  T+   S    A +S DG   Y+  A  + V   D     +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG 264
           +       + +  ++ P    +++       + V D  +    G
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 5/41 (12%), Positives = 13/41 (31%)

Query: 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
                +A     + +  + +    V + D  +  I  T+  
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 27/211 (12%)

Query: 32  FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWD- 89
                 S   +  + + E   +    +                     GS    A   + 
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179

Query: 90  --ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--------- 138
              +T  E    E + ++   A+S+    L+   +   +   DL+  DA           
Sbjct: 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 239

Query: 139 --REVGNSSGSIRTVA---------WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
             R  G   G  + VA          L   +      T S  V + DA++G+ +   E  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG 299

Query: 188 SPVTSAEVSRDGR---YITTADGSSVKFWDA 215
             + S  VS+D +   Y  +    ++   DA
Sbjct: 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 17/179 (9%), Positives = 43/179 (24%), Gaps = 29/179 (16%)

Query: 26  PITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADF 83
             +     LV  +        +  +GD  ++   E    A  +           +     
Sbjct: 201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 84  TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
                                 R     +           + + + D             
Sbjct: 261 D---------------------RIYLLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFE 297

Query: 144 SSGSIRTVAWLHSDQTIL-SSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDG 199
               I ++     ++ +L +  T    + + DA SG+ ++++      P      +  G
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGP-QVITTADMG 355

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLV 221
           +  D+G + L D  S KIV+ ++T   V  + +S  GRY+      + +   D       
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 96

Query: 222 KGYNMPCNTESASLE------PKLGNIFIAGGEDMWVHVFDFHT 259
           K   +    E+ S+E       +               + D  T
Sbjct: 97  KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 5/156 (3%)

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           LD   LFS +        L D  +       +  + V     S     LL  G +  + +
Sbjct: 28  LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDM 87

Query: 129 FDLNRPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184
            DL   +    A  +    +     +    + D+  ++         + D  + +  Q +
Sbjct: 88  IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 185 ETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFG 219
            T+   V +     + R            +  N   
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 26/235 (11%)

Query: 2   DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK 61
           +  KV V        RP   L    +     F V+        L +G++   +   +   
Sbjct: 9   ESWKVLVKP----EDRPKKQLN--DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY 62

Query: 62  GAVWSCCLDANALFSASGSADFTAKLWDALTGDE------KHSFEHKHIVRACAFSEDTH 115
            AV    + A+  +      D    + D    +       K   E + +  +     +  
Sbjct: 63  -AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121

Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT-----------VAWLHSDQTILSSC 164
             + G +              P + V     ++ T           +   H     + + 
Sbjct: 122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181

Query: 165 TDSGGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH 217
            ++G V L + +    +   ++     +         RY  TA  +S K    + 
Sbjct: 182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS 236

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAF 110
                  H G+V+      +    AS SAD T K+W+  T   + +     +   +    
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 111 SEDTHLLLTGGFEKILRIFDL 131
                 L++      +   + 
Sbjct: 290 IWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 7/65 (10%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAE--VSRDGRYITTADGS-S 209
               D T ++S +    +++W+  + K+ +T+   + +   +  +    + + +   +  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 210 VKFWD 214
           + F +
Sbjct: 305 INFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 25/250 (10%), Positives = 46/250 (18%), Gaps = 14/250 (5%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
            TP G  +   +  +S       +      +  H           +  + ASG      +
Sbjct: 25  NTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 83

Query: 87  LW-------------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133
           +W                +G  K         R  A  E                     
Sbjct: 84  IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 143

Query: 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA 193
             A      +   S        SD   ++                         +P  S 
Sbjct: 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203

Query: 194 EVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVH 253
             S  G                              +         G    +   D  + 
Sbjct: 204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 263

Query: 254 VFDFHTGEQI 263
           +++  T +  
Sbjct: 264 IWNVATLKVE 273

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 30/260 (11%), Positives = 68/260 (26%), Gaps = 17/260 (6%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCC 68
           +   HS        S   P G++  S     +  + +          T     G V    
Sbjct: 53  IYTEHSHQTTVAKTS---PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109

Query: 69  LDA--NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
            D+    + +     +    ++   TG    +   +         + +            
Sbjct: 110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169

Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE- 185
            +     P    +               + D ++ +S    G + L++   G      E 
Sbjct: 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229

Query: 186 -------TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEP 237
                      V     S DG  I +A    ++K W+     + K   +    E   L  
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 238 KL-GNIFIAGGEDMWVHVFD 256
                  ++   + +++  +
Sbjct: 290 IWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 58  EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHL 116
                 V       + +   +G+   +       +  +   + EH H       S   + 
Sbjct: 16  ARGTAVVLGNTPAGDKIQYCNGT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 117 LLTGGFEKILRIF 129
             +G     +RI+
Sbjct: 73  CASGDVHGNVRIW 85

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED 113
           + T  GH   +    L  N L   SGS D     W + +  + HS    +++ +   S+ 
Sbjct: 6   LKTISGHNKGIT--ALTVNPL--ISGSYDGRIMEWSSSSMHQDHS----NLIVSLDNSKA 57

Query: 114 THL 116
              
Sbjct: 58  QEY 60

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 9e-05
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 3/80 (3%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAF 110
            I           +   +      A+GS D    ++      +       HK  V    +
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266

Query: 111 SEDTHLLLTGGFEKILRIFD 130
                 L++ G +  ++ ++
Sbjct: 267 ETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLD 70
            +  S    +   +    +   + + S D++  + + +     I     HK  V +   +
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267

Query: 71  ANALFSASGSADFTAKLWD 89
             +    S  AD   K W+
Sbjct: 268 TPSTL-VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 3e-04
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 97  HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156
                     A     +  L+ TG  +  + I+ + RP    + +      +  + W  +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ET 268

Query: 157 DQTILSSCTDSGGVRLWD 174
             T++SS  D   ++ W+
Sbjct: 269 PSTLVSSGAD-ACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 7/67 (10%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 150 TVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLET-KSPVTSAEVSRDGRYITTADG 207
                  ++ ++++ +    + ++  +   KI++ L   K  V +         +++   
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278

Query: 208 SSVKFWD 214
           + +K W+
Sbjct: 279 ACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 27/255 (10%), Positives = 64/255 (25%), Gaps = 14/255 (5%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70
              GH++ +  L  +P       L+S S D   M  +  +       + H   + S    
Sbjct: 8   TISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKILRI 128
               +S+    D                              + D  LL+   F   +  
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
                       +  +  ++            LS    S  ++         +    +++
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            + + +V                   A     +   +     + A+ E    ++   G  
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 249 DMWVHVFDFHTGEQI 263
           D  + ++      +I
Sbjct: 236 DTNIFIYSVKRPMKI 250

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 5/82 (6%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV----WSC 67
                 PV    ++    D     +   D++  + +  T   +  +   K  +       
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303

Query: 68  CLDANALFSASGSADFTAKLWD 89
               N     S S D T   ++
Sbjct: 304 VATGNGRI-ISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP-----VTSAEVSRDGRYITTADG 207
               D    ++      +R+WD  + K VQ                  + +GR I+ +  
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 208 SSVKFWD 214
            ++ F++
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 77  ASGSADFTAKLWDALTGDEKHSFE-HKHIVR----ACAFSEDTHLLLTGGFEKILRIFDL 131
           A+  AD T ++WD  T      +   K  +         + +   +++   +  L  ++L
Sbjct: 267 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 25/264 (9%), Positives = 68/264 (25%), Gaps = 23/264 (8%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--------EGHKGAVWS 66
            S  V  + +SP      +L S  +    ++          +         +   G +  
Sbjct: 62  GSSVVTTVKFSP-IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120

Query: 67  CCLDANALFSASGSA--DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH----LLLTG 120
              D             D         +G+                 + +     + +  
Sbjct: 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 180

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
               +       +  A  R        +R V +       + +      +  +D +SG+ 
Sbjct: 181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 240

Query: 181 VQTLETKSPVTSAEV----SRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE---S 232
           ++ +E         +      D +   T    ++++ WD      V+ + +         
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 233 ASLEPKLGNIFIAGGEDMWVHVFD 256
             +        I+   D  ++ ++
Sbjct: 301 VGVVATGNGRIISLSLDGTLNFYE 324

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.47
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.28
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.14
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.12
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.04
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.03
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.84
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.58
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.58
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.5
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.46
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.35
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.27
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.22
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.89
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.75
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.69
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.67
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.39
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.03
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.86
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.83
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.32
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.22
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.1
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.08
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.9
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.87
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.04
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.62
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.34
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.12
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.65
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.55
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.86
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.38
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.6
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.46
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.92
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	83.39

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-38  Score=253.39  Aligned_cols=245  Identities=23%  Similarity=0.387  Sum_probs=204.1

Q ss_pred             ecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCC--------------
Q 024676            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--------------   72 (264)
Q Consensus         7 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~--------------   72 (264)
                      +...++.||+++|.+|+|+|   ++++|+||+.|++|++||+.+++.+.++.+|.+.|.+++|+++              
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp---~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             CccEEEcCCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            34457899999999999996   8899999999999999999999988888888888888877765              


Q ss_pred             ----------------------------CcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCC
Q 024676           73 ----------------------------ALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFE  123 (264)
Q Consensus        73 ----------------------------~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d  123 (264)
                                                  +..+++++.|+.+++||+.++.....+. |...+..++++|+++++++++.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence                                        4456777888899999998888777665 77789999999999999999999


Q ss_pred             CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCC-------------------CeEEEEeeCCCeEEEEECCCCceeEEe
Q 024676          124 KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-------------------QTILSSCTDSGGVRLWDARSGKIVQTL  184 (264)
Q Consensus       124 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~~~~~~d~~v~iwd~~~~~~~~~~  184 (264)
                      +.+++|+++..+.. ..+..+...+..+++.+..                   ..++.+++.|+.|++||+++++++..+
T Consensus       165 ~~v~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         165 QTVRVWVVATKECK-AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             SCEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeeccceee-EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            99999999876543 3344566777777776543                   235777888999999999999998887


Q ss_pred             cC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          185 ET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       185 ~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      .. ..++.+++++|++++|++ +.|+.|++||+++++++..+..+.. ...+++++ ++.+|++||.|++|++||
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence            64 567999999999987654 6689999999999999999886544 45567776 588999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-38  Score=258.14  Aligned_cols=245  Identities=13%  Similarity=0.200  Sum_probs=201.6

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--EEeeeCCcCCEEEEEECCCCcEEEEecC--CC
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGSA--DF   83 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--~~~~~~H~~~V~~v~~~~~~~~l~s~s~--D~   83 (264)
                      ...++.+|+++|.+++|+|   +|++||+|+.|++|++|+..+++.  ...+.+|.++|.+++|++++.++++++.  ++
T Consensus        50 ~~~~~~~H~~~v~~~~~sp---~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~  126 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSP---SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER  126 (311)
T ss_dssp             CCEEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred             eeEEEcCCCCCEEEEEEeC---CCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccc
Confidence            3345679999999999996   899999999999999999988763  4568899999999999999999988875  56


Q ss_pred             eEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCE-EEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEE
Q 024676           84 TAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      .+++|+..+++....+. |...|++++|+|++++ +++|+.|+.|++||+++.+. ......+...+.++.++|++. ++
T Consensus       127 ~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-~~~~~~~~~~i~~v~~~p~~~-~l  204 (311)
T d1nr0a1         127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGS-LF  204 (311)
T ss_dssp             SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECTTSS-EE
T ss_pred             cccccccccccccccccccccccccccccccceeeeccccccccccccccccccc-ccccccccccccccccCcccc-cc
Confidence            79999999887766654 7789999999998875 77899999999999987653 344456788999999998655 56


Q ss_pred             EEeeCCCeEEEEECCCCceeEEec--------CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCc-
Q 024676          162 SSCTDSGGVRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTE-  231 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~-  231 (264)
                      ++++.|+.|++||+++++.+..++        +..+|.+++|+|++++|++ +.|+.|+|||++++++++.+..+.... 
T Consensus       205 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc
Confidence            677788999999999998877664        2357999999999988765 468999999999999999887654322 


Q ss_pred             -eeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          232 -SASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       232 -~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                       ...+.+ .++.++++|.||.|++||.+
T Consensus       285 ~~~~~~~-~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         285 QQLGIIW-TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEE-CSSCEEEEETTCCEEEEETT
T ss_pred             eEEEEEe-cCCEEEEEECCCEEEEEeCC
Confidence             233433 36679999999999999964

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-37  Score=253.51  Aligned_cols=243  Identities=18%  Similarity=0.296  Sum_probs=202.6

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      ...+++||+++|.+|+|+|   ++++||+|+.||.|+|||..+++.+..+.+|.++|.+++|+|++.++++|+.|+++++
T Consensus        47 ~~~tL~GH~~~I~~l~~s~---~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             EEEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             eeEEECCCCCCEEEEEECC---CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            4566889999999999996   8999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCc----EEEEe------------------------------------------ecCCeEEEEEECCCCCEEEEee
Q 024676           88 WDALTGD----EKHSF------------------------------------------EHKHIVRACAFSEDTHLLLTGG  121 (264)
Q Consensus        88 wd~~~~~----~~~~~------------------------------------------~~~~~v~~~~~~~~~~~l~s~~  121 (264)
                      |+.....    ....+                                          .+...+....+.+...++++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            9964431    11000                                          0233467788888999999999


Q ss_pred             CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec---CCCCEEEEEEcCC
Q 024676          122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRD  198 (264)
Q Consensus       122 ~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~s~~  198 (264)
                      .|+.+++||+++++.. ..+..|.+.+.+++|+|++. ++++++.|+.|++||++..+.+..+.   ...++.+++|+|+
T Consensus       204 ~d~~v~i~d~~~~~~~-~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
T d1tbga_         204 CDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             TTTEEEEEETTTTEEE-EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred             cCceEEEEECCCCcEE-EEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence            9999999999876543 34456788999999988655 56677888999999999988776653   3456999999999


Q ss_pred             CcEEEE-eCCCcEEEEECCCceeeeEEecCCC-CceeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          199 GRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       199 ~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      +++|++ +.|+.|++||+.+++++..+..+.. ...+++.| ++.+|++||.|+.|++||
T Consensus       282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence            988765 5689999999999999998876544 45667777 588999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-37  Score=252.07  Aligned_cols=244  Identities=16%  Similarity=0.169  Sum_probs=203.4

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce-----EEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-----IGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~-----~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      .+|..+|.+|+|+|   +|++|++|+ |+.|+|||+.++..     .....+|.+.|.+++|+|++.+|++|+.|++|++
T Consensus        48 ~~H~~~V~~v~fs~---~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          48 LNHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSSCCCEEEECS---SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCCcEEEEEECC---CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            38999999999996   999999998 89999999876532     2234579999999999999999999999999999


Q ss_pred             EeCCCCc--EEEEe-ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           88 WDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        88 wd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ||+....  ....+ .|...+..+.++|++.++++++.|+.+++|++++++.. .....+...+.+++|.+++. .++++
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~-~~~~~  201 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV-RQFQGHTDGASCIDISNDGT-KLWTG  201 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc-ccccc
Confidence            9987654  33333 36778999999999999999999999999999876532 34445778899999987665 55566


Q ss_pred             eCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEE
Q 024676          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (264)
                      +.|+.|++||+++++.+..+.+..++.+++++|+++++++ +.++.+++||++..+....+........+.+.| ++++|
T Consensus       202 ~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~-~g~~l  280 (337)
T d1gxra_         202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWF  280 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             cccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECC-CCCEE
Confidence            7789999999999999988888889999999999988765 568999999999887765554445556677777 58899


Q ss_pred             EEecCCCeEEEEEcCcceee
Q 024676          244 IAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       244 ~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++|+.|+.|++||+.+++.+
T Consensus       281 ~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         281 VSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEE
T ss_pred             EEEeCCCeEEEEECCCCCEE
Confidence            99999999999999988765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-36  Score=247.89  Aligned_cols=244  Identities=12%  Similarity=0.145  Sum_probs=203.0

Q ss_pred             ccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC
Q 024676           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~   93 (264)
                      .+.+.+..++++|   +|+.|+.++ ++.+.+|++.+++....|.+|++.|.+++|+|++.++++|+.|++|+|||+.++
T Consensus        15 ~~r~~~~~~a~~~---~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTP---AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECT---TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCCeEEEEEcC---CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence            3444556788885   888988876 556899999999888889999999999999999999999999999999999887


Q ss_pred             cEE--EEe-ecCCeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 024676           94 DEK--HSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (264)
Q Consensus        94 ~~~--~~~-~~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~  168 (264)
                      ...  ..+ .|..+|.+++|+|+++++++++.  ++.+++|++++++.. ..+..|...+.+++|.|+++.++++++.|+
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~-~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~  169 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN-GNLTGQARAMNSVDFKPSRPFRIISGSDDN  169 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC-BCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             ccccccccccccCcccccccccccccccccccccccccccccccccccc-ccccccccccccccccccceeeeccccccc
Confidence            533  333 37889999999999999999875  466999999876544 334457788999999998888888899999


Q ss_pred             eEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC--------CCceeeEcCC
Q 024676          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPK  238 (264)
Q Consensus       169 ~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~  238 (264)
                      .|++||+++++....+.. ..+|.++.++|+++++++ +.|+.|++||.+..+.+..+....        ....++++| 
T Consensus       170 ~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-  248 (311)
T d1nr0a1         170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-  248 (311)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-
Confidence            999999999998887754 567999999999988765 568999999999988777765321        234567777 


Q ss_pred             CCCEEEEecCCCeEEEEEcCcceee
Q 024676          239 LGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       239 ~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++++|++||.|+.|++||+.+++.+
T Consensus       249 ~~~~l~tgs~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         249 DGTKIASASADKTIKIWNVATLKVE  273 (311)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            5899999999999999999998764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=247.88  Aligned_cols=238  Identities=15%  Similarity=0.192  Sum_probs=206.6

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC--ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~--~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~   90 (264)
                      .+|+++|.+|+|+|   +|++|++|+.|+.|++||....  +....+.+|...|..++|++++.++++++.|+.+++|++
T Consensus        94 ~~h~~~I~~v~~s~---dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          94 LNRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             SCTTSBEEEEEECT---TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCCCCcEEEEEEcC---CCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            58999999999996   8999999999999999998754  456778899999999999999999999999999999999


Q ss_pred             CCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        91 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      .+++...... |..++.+++|+++++.+++++.|+.+++||+++++..  ....+.+.+.+++|.|.+. ++++++.|+.
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~--~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~  247 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL--QQHDFTSQIFSLGYCPTGE-WLAVGMESSN  247 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceee--cccccccceEEEEEccccc-ccceeccccc
Confidence            9987666554 7889999999999999999999999999999876532  2234678899999988665 5566778899


Q ss_pred             EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecC
Q 024676          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~  248 (264)
                      +++||+++++......+..+|.+++|+|++++|++ +.|+.|++||+.+++.+..+.......+..++| ++++|++||.
T Consensus       248 i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~t~s~  326 (337)
T d1gxra_         248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-DDKYIVTGSG  326 (337)
T ss_dssp             EEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEET
T ss_pred             cccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeC-CCCEEEEEeC
Confidence            99999999988777777788999999999987765 568999999999999888887766667778887 4889999999


Q ss_pred             CCeEEEEEc
Q 024676          249 DMWVHVFDF  257 (264)
Q Consensus       249 d~~v~vwd~  257 (264)
                      |++|++||+
T Consensus       327 D~~I~vWdl  335 (337)
T d1gxra_         327 DKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-36  Score=245.03  Aligned_cols=243  Identities=16%  Similarity=0.133  Sum_probs=188.1

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      -.++.||+++|.+|+|+|   +|++|++|+.|+.|++||+++++.++.+. +|.+.|.+++|+|++.++ +++.|+.+++
T Consensus         5 ~~~~~GH~~~V~~l~~s~---dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~   80 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSA---DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKV   80 (299)
T ss_dssp             EEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred             ceEcCCCCCCcEEEEECC---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEE
Confidence            356789999999999996   89999999999999999999999888874 799999999999999764 5667999999


Q ss_pred             EeCCCCcE---------------------------------EEEe--------ecCCeEEEEEECCCCCEEEEeeCCCcE
Q 024676           88 WDALTGDE---------------------------------KHSF--------EHKHIVRACAFSEDTHLLLTGGFEKIL  126 (264)
Q Consensus        88 wd~~~~~~---------------------------------~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~i  126 (264)
                      |+......                                 +..+        .....+..++++|+++++++++.|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98643210                                 0000        123356788999999999999999999


Q ss_pred             EEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe---c-CCCCEEEEEEcCCCcEE
Q 024676          127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL---E-TKSPVTSAEVSRDGRYI  202 (264)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~---~-~~~~v~~~~~s~~~~~l  202 (264)
                      ++||+++++........+...+.+++|+|++. ++++++.|+.|++||++++......   . +..+|.+++|+|++.+|
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccce
Confidence            99999766543333445778999999998665 5666778899999999887654322   2 34679999999999987


Q ss_pred             EE-eCCCcEEEEECCCceeeeEEec---CCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          203 TT-ADGSSVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       203 ~~-~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      ++ +.|+.|++||+++.........   +.......+.++ +.+|++||.|+.|++||+
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TTEEEEEETTSCEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-CCEEEEEeCCCEEEEEec
Confidence            65 5689999999987654333322   222334444453 789999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-35  Score=245.60  Aligned_cols=244  Identities=20%  Similarity=0.336  Sum_probs=196.1

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee------------------CCcCCEEEEEECCCCc
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------------------GHKGAVWSCCLDANAL   74 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~------------------~H~~~V~~v~~~~~~~   74 (264)
                      .+|+++|.+|+|+|   ||++||+|+ |+.|++|++.+++.+..+.                  +|...|.+++|+|++.
T Consensus        59 ~~H~~~V~~l~fs~---dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          59 LDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             EECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCCcEEEEEECC---CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            47999999999996   899999987 9999999999988766553                  4667799999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEE
Q 024676           75 FSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (264)
Q Consensus        75 ~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~  153 (264)
                      +|++|+.|++|++||...++...... |...|..+.+++++..+++++.++.+++||.++.....  ..........+.+
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~  212 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL--TLSIEDGVTTVAV  212 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEECSSCEEEEEE
T ss_pred             cceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccc--ccccccccccccc
Confidence            99999999999999999988777664 78899999999999999999999999999997654322  2234455667778


Q ss_pred             ecCCCeEEEEeeCCCeEEEEECCCCceeEEec--------CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeee--
Q 024676          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK--  222 (264)
Q Consensus       154 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~--  222 (264)
                      .+.++.++++++.|+.|++||.++++....+.        +..+|.+++++|++++|++ +.|+.|++||+++.....  
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  292 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  292 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence            88788888889999999999999988776553        2457999999999988765 568999999997654322  


Q ss_pred             ----------EEecC-CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          223 ----------GYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       223 ----------~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                                .+..+ .....+.+.+ ++++|++|+.|+.|++||+.+++.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         293 KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             ------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEE
Confidence                      12222 2334566766 5899999999999999999998875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-35  Score=244.91  Aligned_cols=238  Identities=12%  Similarity=0.130  Sum_probs=190.1

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCc--eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~--~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      +-+||.|++|+|   ||++||+|+.|+.|++|+..+++  .+..|++|+++|.+++|+|++.+|+||+.|++|+|||+.+
T Consensus         6 ~~~pIt~~~~s~---dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECC---CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            347899999996   99999999999999999998775  5678899999999999999999999999999999999987


Q ss_pred             CcEEEEe---ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCC---eEeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676           93 GDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus        93 ~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      +......   .|...|.+++|+|+++.+++++.|+++++|+++......   .....+...+.+++|.|++. ++++++.
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~  161 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSC  161 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceecccc
Confidence            7644433   367789999999999999999999999999987654322   22234677899999988655 5677888


Q ss_pred             CCeEEEEECCCCc------------------eeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEec
Q 024676          167 SGGVRLWDARSGK------------------IVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       167 d~~v~iwd~~~~~------------------~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~  226 (264)
                      |++|++||.....                  .+.... +...+.+++|+|+++++++ +.|+.|++||+++...+..+..
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence            9999999986532                  222222 3456999999999987765 5689999999999988888876


Q ss_pred             CCC-CceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          227 PCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       227 ~~~-~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      +.. ..++.|.+ ++++|++|+ |+.+++|...
T Consensus       242 ~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         242 ETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             SSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEE
T ss_pred             ccccceeeeecC-CCCEEEEEc-CCceEEEEee
Confidence            554 44667776 477776655 7777776543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.8e-35  Score=243.50  Aligned_cols=207  Identities=15%  Similarity=0.131  Sum_probs=169.8

Q ss_pred             eeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE--EeeeCCcCCEEEEEECCCCcEEEEecCC
Q 024676            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSAD   82 (264)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~--~~~~~H~~~V~~v~~~~~~~~l~s~s~D   82 (264)
                      .+.....+.||.++|.+|+|+|   ++++|++|+.|++|++|+..+++..  ..+.+|...|.+++|+|++.++++|+.|
T Consensus        40 ~~~~~~~l~gH~~~V~~l~fsp---~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d  116 (371)
T d1k8kc_          40 KWVQVHELKEHNGQVTGVDWAP---DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS  116 (371)
T ss_dssp             EEEEEEEEECCSSCEEEEEEET---TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEecCCCCCEEEEEECC---CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeeccc
Confidence            4455566789999999999996   8899999999999999999887654  4567899999999999999999999999


Q ss_pred             CeEEEEeCCCCcEEEEe-----ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC-----------------CeE
Q 024676           83 FTAKLWDALTGDEKHSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-----------------PRE  140 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-----------------~~~  140 (264)
                      +++++|+..........     .|...|.+++|+|++++|++|+.|+++++|++......                 ...
T Consensus       117 ~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (371)
T d1k8kc_         117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE  196 (371)
T ss_dssp             SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred             CcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeee
Confidence            99999998765433222     26778999999999999999999999999998643211                 112


Q ss_pred             eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676          141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (264)
Q Consensus       141 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  215 (264)
                      ...+.+.+.+++|+|++. ++++++.|+.|++||+++++++..+.. ..++.+++|+|++++++++.|+.+++|..
T Consensus       197 ~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~  271 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY  271 (371)
T ss_dssp             CCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred             ccCccCcEEEEEeecccc-cccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEe
Confidence            234567789999998665 566778889999999999998887764 45799999999999999988877666543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=232.62  Aligned_cols=245  Identities=14%  Similarity=0.204  Sum_probs=191.8

Q ss_pred             Eeecc-CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce--------EEeeeCCcCCEEEEEECCCCcEEEEec-
Q 024676           11 VCHGH-SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--------IGTFEGHKGAVWSCCLDANALFSASGS-   80 (264)
Q Consensus        11 ~~~~h-~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~--------~~~~~~H~~~V~~v~~~~~~~~l~s~s-   80 (264)
                      .+.|| ..+|.+++|+|. .+|++|++|+.|++|++|+...++.        ...+..|.++|.+++|++++.++++++ 
T Consensus        57 ~~~gh~~~~v~~v~fsP~-~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPI-KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE  135 (325)
T ss_dssp             EECTTTTSCEEEEEECSS-TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             EEeCCCCCCEEEEEEeeC-CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence            44677 568999999974 3678999999999999999876432        234567899999999999999886654 


Q ss_pred             -CCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCE-EEEeeCCCcEEEeeCCCCCCCCeEe--ccCCCCeEEEEEec
Q 024676           81 -ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLH  155 (264)
Q Consensus        81 -~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~  155 (264)
                       .++.+++|+..++..+..+. |...|.+++|+|+++. +++++.|+.+++||++..+......  ..+...+.+++|+|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~p  215 (325)
T d1pgua1         136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP  215 (325)
T ss_dssp             CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred             cccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecc
Confidence             57889999999998887775 7889999999998765 6789999999999987554322221  23566799999999


Q ss_pred             CCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCE----EEEEEcCCCcEE-EEeCCCcEEEEECCCceeeeEEecCCC
Q 024676          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPV----TSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCN  229 (264)
Q Consensus       156 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v----~~~~~s~~~~~l-~~~~~~~i~iwd~~~~~~~~~~~~~~~  229 (264)
                      +.+.++++++.|+.|++||+++++++..+..+ .++    .++.+ |++++| +++.|+.|+|||++++++++.+..+..
T Consensus       216 d~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         216 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             ccceeccccccccceeeeeeccccccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            87788888899999999999999998888643 233    34444 566555 557789999999999999999886544


Q ss_pred             C---ceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          230 T---ESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       230 ~---~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      .   ....+.+..+.++++||.|+.|++||+
T Consensus       295 ~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            2   223344434568999999999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-33  Score=234.38  Aligned_cols=241  Identities=22%  Similarity=0.329  Sum_probs=193.7

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      .+|...|.+|+|+|   +|++|++|+.|+.|++|+...++.+..+.+|.+.|.++++++++..+++++.++.+++||..+
T Consensus       118 ~~~~~~V~~l~~s~---~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         118 PSSDLYIRSVCFSP---DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             -CCCCBEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cCCCCCEEEEEECC---CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence            47889999999996   899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeecCCeEEEEEECC-CCCEEEEeeCCCcEEEeeCCCCCCCCe------EeccCCCCeEEEEEecCCCeEEEEee
Q 024676           93 GDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPR------EVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      ........+......+.+.+ ++++|++++.|+.+++|+++++.....      ....|.+.+.+++|++++. ++++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~  273 (388)
T d1erja_         195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS  273 (388)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEE
Confidence            88777777666666666655 788999999999999999986543221      1234677899999988655 566778


Q ss_pred             CCCeEEEEECCCCceeE------------E-ecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCc
Q 024676          166 DSGGVRLWDARSGKIVQ------------T-LETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTE  231 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~------------~-~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~  231 (264)
                      .|+.|++||+++++...            . ..+...+.+++++|++++|++ +.|+.|++||+++++++..+..+....
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V  353 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV  353 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCE
Confidence            88999999998754321            1 123467999999999988765 568999999999999999888755432


Q ss_pred             -eee------EcCCCCCEEEEecCCCeEEEEEcC
Q 024676          232 -SAS------LEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       232 -~~~------~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                       ...      ++| ++.+|++||.|++|++||++
T Consensus       354 ~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         354 ISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence             232      233 58899999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-32  Score=223.14  Aligned_cols=243  Identities=17%  Similarity=0.277  Sum_probs=185.6

Q ss_pred             cceEeeccCCCe-eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEE
Q 024676            8 VPLVCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (264)
Q Consensus         8 ~~~~~~~h~~~v-~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~   86 (264)
                      +...++||...| .|+.|     ++++|+||+.|++|++||..+++.+.+|.+|+++|.+++|++++ +++||+.|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~-----~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~   77 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR   77 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE-----ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEE
T ss_pred             CcEEECCcCCCcEEEEEE-----CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecccccc
Confidence            345689998875 67766     46799999999999999999999999999999999999999865 789999999999


Q ss_pred             EEeCCCCcEEEEeec---CCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe----------------------
Q 024676           87 LWDALTGDEKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----------------------  141 (264)
Q Consensus        87 iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~----------------------  141 (264)
                      +|+............   ........+.++++.+++++.|+.+++||+++........                      
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            999998876665542   2345566778899999999999999999987643221110                      


Q ss_pred             ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec-CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCce
Q 024676          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG  219 (264)
Q Consensus       142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~  219 (264)
                      ..+...+.  .+.+ ++.+++.+..|+.|++||+++++.+.... ....+.++.++|++.++++ +.|+.|++||++++.
T Consensus       158 ~~~~~~v~--~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  234 (355)
T d1nexb2         158 RGHMASVR--TVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  234 (355)
T ss_dssp             ECCSSCEE--EEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC
T ss_pred             eecccccc--cccc-ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc
Confidence            00111122  1222 34466777888999999999999887775 4456889999999987654 668999999999999


Q ss_pred             eeeEEecCCCC-ceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          220 LVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       220 ~~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      .+..+..+... ..+.+.   +++|++|+.|+.|++||+.++++
T Consensus       235 ~~~~~~~h~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~  275 (355)
T d1nexb2         235 LMYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSR  275 (355)
T ss_dssp             EEEEECCCSSCCCEEEEC---SSEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccccccccccc---cceeeeeecccccccccccccce
Confidence            88888765443 334442   57899999999999999887754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-32  Score=220.41  Aligned_cols=247  Identities=25%  Similarity=0.414  Sum_probs=179.1

Q ss_pred             eeecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCe
Q 024676            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (264)
Q Consensus         5 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~   84 (264)
                      .+..+.+++||+++|..+ +++   +|++|||||.|++|++||..++++++++.+|++.|.+++|+++  ++++|+.|++
T Consensus         5 ~~~~~~~l~GH~~~V~s~-~~~---~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVITC-LQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             CCCCCEEEECSTTSCEEE-EEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             CCCcCEEECCcCCceEEE-EEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccc
Confidence            456778899999988542 343   6789999999999999999999999999999999999999874  8899999999


Q ss_pred             EEEEeCCCCcEEEEee-cCCeE--------------------------------------EEEEECCCCCEEEEeeCCCc
Q 024676           85 AKLWDALTGDEKHSFE-HKHIV--------------------------------------RACAFSEDTHLLLTGGFEKI  125 (264)
Q Consensus        85 v~iwd~~~~~~~~~~~-~~~~v--------------------------------------~~~~~~~~~~~l~s~~~d~~  125 (264)
                      +++|+........... +...+                                      ......+....+++++.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence            9999986654322211 00000                                      01122334556788889999


Q ss_pred             EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEE
Q 024676          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT  204 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~  204 (264)
                      +++||.+..... .....+........  + ++..+++++.|+.|++||+++++++..+..+ ..+.++.++++ .++++
T Consensus       159 i~~~d~~~~~~~-~~~~~~~~~~~~~~--~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~  233 (342)
T d2ovrb2         159 VKVWDPETETCL-HTLQGHTNRVYSLQ--F-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN-ILVSG  233 (342)
T ss_dssp             EEEEEGGGTEEE-EEECCCSSCEEEEE--E-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT-EEEEE
T ss_pred             EEEeecccceee-EEEcCccccccccc--C-CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCC-EEEEE
Confidence            999998654432 22333444444433  3 3456778888999999999999988877654 45777777653 34455


Q ss_pred             eCCCcEEEEECCCceeeeEEecCC-CCc-eeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          205 ADGSSVKFWDANHFGLVKGYNMPC-NTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       205 ~~~~~i~iwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +.|+.|++||+...+....+..+. +.. ...+.+ .++++++|+.|+.|++||+.+|+.+
T Consensus       234 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCEEEEEecccccccccccccceeeeceeeccc-CCCeeEEEcCCCEEEEEECCCCCEE
Confidence            678999999999988777775432 222 222333 4679999999999999999999865

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-31  Score=215.58  Aligned_cols=241  Identities=16%  Similarity=0.156  Sum_probs=185.6

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCC-cEEEeCCCC--ceEEeeeCC-cCCEEEEEECC--CCcEEEEecCCCeEEEEeCCC
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSS-PMLRNGETG--DWIGTFEGH-KGAVWSCCLDA--NALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~-v~i~~~~~~--~~~~~~~~H-~~~V~~v~~~~--~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      +.+|+|+|   +|+.|+.++.+.. ++.|+....  ..+..+.+| ...|.+++|+|  ++.+++||+.||+|+|||+..
T Consensus        20 ~t~l~~~~---~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          20 TTHLSYDP---TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             CCCCEEET---TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             eEEEEECC---CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            46889996   7888888776553 456665443  346778888 56899999997  568999999999999999865


Q ss_pred             CcEEE--------E-eecCCeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEE
Q 024676           93 GDEKH--------S-FEHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus        93 ~~~~~--------~-~~~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  161 (264)
                      +....        . ..|..+|..++|+++++++++++.  ++.+++|+.++++. ...+..|...+.+++|.+.+..++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCEE
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc-ceeeeecccccccccccccccceE
Confidence            43211        1 136778999999999999988764  67899999876653 234455788999999999888888


Q ss_pred             EEeeCCCeEEEEECCCCceeEEec----CCCCEEEEEEcCC-CcEEE-EeCCCcEEEEECCCceeeeEEecCCCCc---e
Q 024676          162 SSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRD-GRYIT-TADGSSVKFWDANHFGLVKGYNMPCNTE---S  232 (264)
Q Consensus       162 ~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~s~~-~~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~---~  232 (264)
                      ++++.|+.+++||.++++......    +...|.+++|+|+ +.+++ ++.|+.|++||+++++.++.+..+....   .
T Consensus       176 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~  255 (325)
T d1pgua1         176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI  255 (325)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred             EEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccce
Confidence            888999999999999888766553    2356999999997 56665 4678999999999999888886543322   2


Q ss_pred             eeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       233 ~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+...+++++|+++|.|+.|+|||+.+++.+
T Consensus       256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         256 FALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             EEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            2222235889999999999999999988864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-30  Score=209.00  Aligned_cols=210  Identities=20%  Similarity=0.380  Sum_probs=168.8

Q ss_pred             ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEee
Q 024676           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (264)
Q Consensus        52 ~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d  130 (264)
                      +..++|+||+++|.+++|+|++.+|+||+.||+|+|||+.+++.+..+. |..+|.+++|+|+++++++|+.|+.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            4568899999999999999999999999999999999999998888775 788999999999999999999999999999


Q ss_pred             CCCCCCCCeE---eccCC-----------------------------------------CCeEEEEEecCCCeEEEEeeC
Q 024676          131 LNRPDAPPRE---VGNSS-----------------------------------------GSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus       131 ~~~~~~~~~~---~~~~~-----------------------------------------~~i~~~~~~~~~~~~~~~~~~  166 (264)
                      ..........   ...+.                                         ..+....+.+ ...+++++..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  204 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC  204 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEET
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeec
Confidence            7543322111   11111                                         1233333333 4456777788


Q ss_pred             CCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC---CCceeeEcCCCCC
Q 024676          167 SGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLGN  241 (264)
Q Consensus       167 d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~  241 (264)
                      |+.|++||+++++++..+.. ..+|.+++++|++.+|++ +.|+.|++||++....+..+....   ....+.+.+ .+.
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~  283 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGR  283 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SSC
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-CCC
Confidence            89999999999999888864 567999999999988765 568999999999998887775433   234566666 589


Q ss_pred             EEEEecCCCeEEEEEcCcceee
Q 024676          242 IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       242 ~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +|++|+.|+.|++||+.+++.+
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~  305 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEECCCEEEEEECCCCcEE
Confidence            9999999999999999988765

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-29  Score=201.73  Aligned_cols=241  Identities=15%  Similarity=0.257  Sum_probs=183.9

Q ss_pred             eecceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         6 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      +.......+|+..|.|+.|     ||++||||+.|++|++||..+++.+++|.+|++.|.+++|  ++.+|+||+.|++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~-----d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             EEEEeccCCCCCCEEEEEE-----cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccc
Confidence            3444445689999999865     6789999999999999999999999999999999999887  56799999999999


Q ss_pred             EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe--EeccCCCCeEEEEEecCCCeEEEE
Q 024676           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      ++|++..+............. ....+....++++..++.+++|+.........  ....+...+....+.+   ..+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~  153 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVS  153 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEE
T ss_pred             ccccccccccccccccccccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceecc---ccccc
Confidence            999999988766665433332 23455666788999999999999876543322  2344566676665543   34556


Q ss_pred             eeCCCeEEEEECCCCceeEEecCC-CCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCE
Q 024676          164 CTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI  242 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (264)
                      ++.|+.|++||+++++.+..+... ..+..+.++++ .+++++.|+.|++||+++...+..+........ .+.+ .+.+
T Consensus       154 ~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~-~~~~  230 (293)
T d1p22a2         154 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRF-DNKR  230 (293)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEC-CSSE
T ss_pred             ccCCCceeeecCCCCcEEEEEcccccccccccCCCC-eEEEecCCCEEEEEecccceeeeeecccceeee-eccc-cceE
Confidence            778899999999999988877643 45666666543 344556789999999999988887765544433 2333 4789


Q ss_pred             EEEecCCCeEEEEEcCcc
Q 024676          243 FIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~~g  260 (264)
                      |++|+.|+.|++||+.++
T Consensus       231 l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EEEEETTSCEEEEEHHHH
T ss_pred             EEEEcCCCEEEEEECCCC
Confidence            999999999999997543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.3e-30  Score=217.05  Aligned_cols=247  Identities=17%  Similarity=0.169  Sum_probs=175.8

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCce------EEeeeCCcCCEEEEE------ECC-CCcE
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------IGTFEGHKGAVWSCC------LDA-NALF   75 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~------~~~~~~H~~~V~~v~------~~~-~~~~   75 (264)
                      .-+.+||..+|.+|++.+     ++|+|||.|++|++|+..+.+.      ......|+..+..+.      ... +..+
T Consensus         7 ~~~~~~H~~~I~~v~~~~-----~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN-----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             EEESSCSSSCEEEEEECS-----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             eecCCcccCccEEEEEeC-----CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcE
Confidence            345589999999998763     5899999999999999766532      222334555443322      222 2356


Q ss_pred             EEEecCCCeEEEEeCCCCcE---EEE--e------ecCCeEEEEEECCC-----CCEEEEeeCCCcEEEeeCCCCCC---
Q 024676           76 SASGSADFTAKLWDALTGDE---KHS--F------EHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNRPDA---  136 (264)
Q Consensus        76 l~s~s~D~~v~iwd~~~~~~---~~~--~------~~~~~v~~~~~~~~-----~~~l~s~~~d~~i~~~d~~~~~~---  136 (264)
                      +++++.|+.|++|++.....   ...  .      .+...+..+++.++     +.++++++.|+.+++|++.....   
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            78999999999999754321   111  1      13445777777665     46788999999999999742210   


Q ss_pred             ------CC-----e---EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEec-------CCCCEEEEEE
Q 024676          137 ------PP-----R---EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-------TKSPVTSAEV  195 (264)
Q Consensus       137 ------~~-----~---~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~  195 (264)
                            ..     .   ....+...+.+++++|++  ++++++.|++|+|||+++++++..++       +..+|++++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                  00     0   011223447788888754  67888999999999999998876553       3467999999


Q ss_pred             cCCCcEEEEe-CCC---cEEEEECCCceeeeEEec-------------C-CCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          196 SRDGRYITTA-DGS---SVKFWDANHFGLVKGYNM-------------P-CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       196 s~~~~~l~~~-~~~---~i~iwd~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      +|+|++|+++ .|+   .|++||+++++.+..+..             + ....+++|.| ++++|++||.|++|++||+
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEET
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEEC
Confidence            9999988765 454   489999999888777642             1 2234567777 5899999999999999999


Q ss_pred             Ccceee
Q 024676          258 HTGEQI  263 (264)
Q Consensus       258 ~~g~~i  263 (264)
                      ++|+.+
T Consensus       319 ~~g~~~  324 (393)
T d1sq9a_         319 KTKERI  324 (393)
T ss_dssp             TTTEEE
T ss_pred             CCCCEE
Confidence            999865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.5e-30  Score=205.27  Aligned_cols=232  Identities=15%  Similarity=0.158  Sum_probs=169.3

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      ...++.||.++|.+|+|+|       |+||+.||+|++|+..++     ..+|++.|.+++++++. .+++++.|+++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~-------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~   71 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKV   71 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT-------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred             eeEEECCCCCceEEEEECc-------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence            3457799999999999986       799999999999998754     46799999999998765 5689999999999


Q ss_pred             EeCCCCc----E------------------------------EEEeecCCeEEEEEECCCCCEEEEeeCC-CcEEEeeCC
Q 024676           88 WDALTGD----E------------------------------KHSFEHKHIVRACAFSEDTHLLLTGGFE-KILRIFDLN  132 (264)
Q Consensus        88 wd~~~~~----~------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~i~~~d~~  132 (264)
                      |++....    .                              ...+....+  ..+++|++..+++++.+ +.+++|++.
T Consensus        72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred             ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeecc
Confidence            9864311    0                              011111122  23456677788877776 579999986


Q ss_pred             CCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEE-ec-CCCCEEEEEEcCCC----------c
Q 024676          133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-LE-TKSPVTSAEVSRDG----------R  200 (264)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~s~~~----------~  200 (264)
                      ..+........+.+.+.+++|+|++. ++++++.|+.|++||+++++.... +. +..+|.+++|+|++          .
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         150 DLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             EEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             ccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence            54433333345677899999988765 566777889999999999886543 33 35679999998754          4


Q ss_pred             EEE-EeCCCcEEEEECCC-ceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          201 YIT-TADGSSVKFWDANH-FGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       201 ~l~-~~~~~~i~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                      +++ ++.|+.|++||+++ .+.+..+..+. ....+.+.+  +..|+++|.|+.|++||+
T Consensus       229 ~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~--~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE--TTEEEEEETTSCEEEEEE
T ss_pred             eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC--CCEEEEEECCCeEEEEEE
Confidence            555 46689999999977 44555554433 345566665  346899999999999995

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.4e-30  Score=208.07  Aligned_cols=243  Identities=15%  Similarity=0.089  Sum_probs=177.3

Q ss_pred             EeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE---EeeeCCcCCEEEEEECCC-CcEEEEecCCCeEE
Q 024676           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHKGAVWSCCLDAN-ALFSASGSADFTAK   86 (264)
Q Consensus        11 ~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~---~~~~~H~~~V~~v~~~~~-~~~l~s~s~D~~v~   86 (264)
                      +..+|++.|.+|+|+|   ++++||+||.|++|++||+.++...   ....+|.++|.+++|+++ +.++++|+.|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp---~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             cCCCCCCCEEEEEEeC---CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            4479999999999997   8999999999999999998766432   233469999999999976 56889999999999


Q ss_pred             EEeCCCCcEEEEeec--------------------------------------------------CCeEEEEEECCCCCE
Q 024676           87 LWDALTGDEKHSFEH--------------------------------------------------KHIVRACAFSEDTHL  116 (264)
Q Consensus        87 iwd~~~~~~~~~~~~--------------------------------------------------~~~v~~~~~~~~~~~  116 (264)
                      +|+...+........                                                  ........+.+.+..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            999866543222110                                                  000112234556677


Q ss_pred             EEEeeCCCcEEEeeCCCCCCCCe--EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCcee------EEe----
Q 024676          117 LLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV------QTL----  184 (264)
Q Consensus       117 l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~------~~~----  184 (264)
                      +++++.|+.+++|+++..+....  .............+.+.+...+++++.||.+.+|+.......      ..+    
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            88888899999999876554332  223334456666777777777888888999999998643211      111    


Q ss_pred             ------cCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          185 ------ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       185 ------~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                            .+...+++++|+|++.+|++ +.|+.|++||+++++.+..+.........++.+ .++++++|+.|.++++|..
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEE-CSSEEEEEEECTHHHHCSS
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEe-CCCEEEEEEcCCcEEEeee
Confidence                  12346899999999987655 678999999999999888776544444566666 4788999999988888754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=8.6e-29  Score=200.03  Aligned_cols=208  Identities=15%  Similarity=0.192  Sum_probs=158.9

Q ss_pred             CceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEE
Q 024676           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRI  128 (264)
Q Consensus        51 ~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~  128 (264)
                      |+..+.+.||+++|.+++|+|++++|+||+.|++|++||+.+++....+.  |...|.+++|+|+++ +++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence            56778999999999999999999999999999999999999998887764  778999999999987 556788999999


Q ss_pred             eeCCCCCCCC--eEeccC-------------------------------------CCCeEEEEEecCCCeEEEEeeCCCe
Q 024676          129 FDLNRPDAPP--REVGNS-------------------------------------SGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus       129 ~d~~~~~~~~--~~~~~~-------------------------------------~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      |+........  .....+                                     .....++++.|+ +.++++++.|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~  159 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND-KQFVAVGGQDSK  159 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT-SCEEEEEETTSE
T ss_pred             eccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            9975432110  000001                                     123455566654 446677788899


Q ss_pred             EEEEECCCCcee--EEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeE---EecCCC-CceeeEcCCCCCE
Q 024676          170 VRLWDARSGKIV--QTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKG---YNMPCN-TESASLEPKLGNI  242 (264)
Q Consensus       170 v~iwd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~  242 (264)
                      |++||+++++..  ....+..+|.+++++|+++++++ +.++.|++||+.+...+..   +..+.. ...+.+.| .+.+
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~  238 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVR  238 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            999999988754  34456778999999999988765 5678999999987654432   222333 34566777 5899


Q ss_pred             EEEecCCCeEEEEEcCcce
Q 024676          243 FIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~~g~  261 (264)
                      |++|+.|+.|++||+.+++
T Consensus       239 l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         239 LATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             EEEEETTSCEEEEETTCTT
T ss_pred             eEEEcCCCEEEEEECCCCC
Confidence            9999999999999998764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-27  Score=194.12  Aligned_cols=245  Identities=20%  Similarity=0.316  Sum_probs=176.8

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC--CcCCEEEEEECCCCcEEEEecCCCeE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTA   85 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~--H~~~V~~v~~~~~~~~l~s~s~D~~v   85 (264)
                      ....+.+|+++|.+|+|+|   + .+|++|+.|+.+++|+....+.......  +........+.+++.++++++.|++|
T Consensus        45 ~~~~l~~H~~~V~~l~~s~---~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  120 (355)
T d1nexb2          45 FLLQLSGHDGGVWALKYAH---G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL  120 (355)
T ss_dssp             EEEEEECCSSCEEEEEEET---T-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred             EEEEEECCCCCEEEEEEcC---C-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcE
Confidence            3455689999999999985   3 4799999999999999998876655543  33444556778899999999999999


Q ss_pred             EEEeCCCCcEEEEee------------------------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe
Q 024676           86 KLWDALTGDEKHSFE------------------------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~  141 (264)
                      ++||+.+........                        |...+  ..+.+++++++++..|+.+++||+++++.. ...
T Consensus       121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~  197 (355)
T d1nexb2         121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCL-YIL  197 (355)
T ss_dssp             EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEE-EEE
T ss_pred             EEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccce-eee
Confidence            999987764332211                        11122  234567889999999999999999876533 233


Q ss_pred             ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCcee
Q 024676          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL  220 (264)
Q Consensus       142 ~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~  220 (264)
                      ..+...+.++.+.+.+. .+++++.|+.|++||+++++.+..+.. ..+|.++.++++ .+++++.|+.|++||+++...
T Consensus       198 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~  275 (355)
T d1nexb2         198 SGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSR  275 (355)
T ss_dssp             CCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCE
T ss_pred             eccccccccccccccce-eeecccccceEEeeeccccccccccccccccccccccccc-eeeeeecccccccccccccce
Confidence            34566778888887665 455667789999999999999888865 456888888753 334456689999999998865


Q ss_pred             eeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ...+... ......+.++.+.++++| .|+.|++||+++|+.+
T Consensus       276 ~~~~~~~-~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         276 KFSYHHT-NLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             EEEEECT-TCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBC
T ss_pred             ecccccC-CceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            5444332 233334444456666665 5899999999999865

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-27  Score=192.97  Aligned_cols=200  Identities=26%  Similarity=0.463  Sum_probs=172.5

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEe
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd   89 (264)
                      ..+.+|...+.++.|+|   +++++++++.|+.+++|+..+++.+..+.+|...+.+++|++++.++++++.|+.|++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~  171 (317)
T d1vyhc1          95 RTMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  171 (317)
T ss_dssp             ECCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccceeeeccC---CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence            33468999999999996   888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEee-cCCeEEEEEECCCC--------------------CEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCe
Q 024676           90 ALTGDEKHSFE-HKHIVRACAFSEDT--------------------HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI  148 (264)
Q Consensus        90 ~~~~~~~~~~~-~~~~v~~~~~~~~~--------------------~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i  148 (264)
                      ..++.....+. +...+..+.++|+.                    .++++++.|+.+++||+++++.. ..+..|...+
T Consensus       172 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~v  250 (317)
T d1vyhc1         172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWV  250 (317)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCE
T ss_pred             eccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE-EEEeCCCCCE
Confidence            99988777764 67788888888763                    57889999999999999876543 3344577899


Q ss_pred             EEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCcEEEE-eCCCcEEEEE
Q 024676          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWD  214 (264)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~~~~i~iwd  214 (264)
                      .++++.|++. ++++++.||.|++||+++++++..+.. ..+|++++|+|++++|++ +.|++|+|||
T Consensus       251 ~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         251 RGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCC-EEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999988665 556677889999999999999988864 568999999999977654 6789999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-25  Score=181.10  Aligned_cols=237  Identities=23%  Similarity=0.344  Sum_probs=168.5

Q ss_pred             ceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEE--------------------
Q 024676            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC--------------------   68 (264)
Q Consensus         9 ~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~--------------------   68 (264)
                      ...+.+|+.+|.++.|+|     ++|++|+.|+.+++|+............+...+....                    
T Consensus        50 ~~~~~~h~~~V~~v~~~~-----~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  124 (342)
T d2ovrb2          50 LRTLVGHTGGVWSSQMRD-----NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI  124 (342)
T ss_dssp             EEECCCCSSCEEEEEEET-----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred             EEEEeCCCCCEEEEEeCC-----CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeec
Confidence            345679999999999985     3899999999999999876654333333322222211                    


Q ss_pred             ------------------ECCCCcEEEEecCCCeEEEEeCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeCCCcEEEe
Q 024676           69 ------------------LDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (264)
Q Consensus        69 ------------------~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  129 (264)
                                        ..+....+++++.|+.+++||......+..+. |...+..  +.+++..+++++.|+.|++|
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~  202 (342)
T d2ovrb2         125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVW  202 (342)
T ss_dssp             SSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEE
T ss_pred             ccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEe
Confidence                              12233455677777788888877766555553 4444444  45578899999999999999


Q ss_pred             eCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC----CCCEEEEEEcCCCcEEEEe
Q 024676          130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTA  205 (264)
Q Consensus       130 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~  205 (264)
                      |++.++.. .....+...+.++++.+   .++++++.|+.|++||....+....+..    ...+.++.++++ .+++++
T Consensus       203 d~~~~~~~-~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~s  277 (342)
T d2ovrb2         203 DVETGNCI-HTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSS  277 (342)
T ss_dssp             ETTTCCEE-EEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEE
T ss_pred             ecccceee-eEecccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC-eeEEEc
Confidence            99876543 34455677788777653   3677888899999999999887776643    345666666653 334566


Q ss_pred             CCCcEEEEECCCceeeeEEecC------CCCceeeEcCCCCCEEEEecCCCe----EEEEEcC
Q 024676          206 DGSSVKFWDANHFGLVKGYNMP------CNTESASLEPKLGNIFIAGGEDMW----VHVFDFH  258 (264)
Q Consensus       206 ~~~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~gs~d~~----v~vwd~~  258 (264)
                      .|+.|++||+++++.++.+...      .....+++.| ++.+|++|+.||+    +++||++
T Consensus       278 ~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence            7899999999999998887532      1234566766 5889999999885    9999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-26  Score=195.55  Aligned_cols=228  Identities=14%  Similarity=0.127  Sum_probs=164.2

Q ss_pred             ccCCCeeeeEeccCC--CCCeEEEEEeCCCCcEEEeCCCCc---------------eEE---eeeCCcCCEEEEEECCCC
Q 024676           14 GHSRPVVDLFYSPIT--PDGFFLVSASKDSSPMLRNGETGD---------------WIG---TFEGHKGAVWSCCLDANA   73 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~--~~g~~l~t~s~d~~v~i~~~~~~~---------------~~~---~~~~H~~~V~~v~~~~~~   73 (264)
                      .+...+..+.|.+..  +.+.++++++.|+.+++|++....               ...   ....+...+.+++|+|++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG  196 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC
Confidence            355667777777532  346899999999999999864211               111   122356678999999998


Q ss_pred             cEEEEecCCCeEEEEeCCCCcEEEEee-------cCCeEEEEEECCCCCEEEEeeCCCc---EEEeeCCCCCCCCeE---
Q 024676           74 LFSASGSADFTAKLWDALTGDEKHSFE-------HKHIVRACAFSEDTHLLLTGGFEKI---LRIFDLNRPDAPPRE---  140 (264)
Q Consensus        74 ~~l~s~s~D~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~d~~---i~~~d~~~~~~~~~~---  140 (264)
                       +++||+.|++|+|||+.+++++..++       |..+|++++|+|++++|++|+.|++   |++||+++++.....   
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence             78999999999999999988776653       6789999999999999999999874   899999876432211   


Q ss_pred             ---------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCC-CEE----EEEEcCCCcEEEEeC
Q 024676          141 ---------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVT----SAEVSRDGRYITTAD  206 (264)
Q Consensus       141 ---------~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~----~~~~s~~~~~l~~~~  206 (264)
                               ...|.+.|.+++|+|++. +|++++.|++|+|||+++++++..+..+. +|.    .++++|++..++.+.
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             cccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence                     124778899999998654 67788899999999999999999987543 343    467899987765332


Q ss_pred             CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       207 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                           +|++.      -++-..  . ........+.|++++.|+.||+|+.
T Consensus       355 -----~~~~~------~~~~~~--~-~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         355 -----VFDVK------FLKKGW--R-SGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             -----EEEEE------EECTTT--S-BSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             -----cceEE------ECccCc--e-eccccCCCCEEEEEEcCCeEEEEeC
Confidence                 23321      011000  0 0111123567999999999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.7e-25  Score=184.17  Aligned_cols=189  Identities=12%  Similarity=0.028  Sum_probs=153.4

Q ss_pred             eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC--eEEEEeCCCCcEEEEe
Q 024676           22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF--TAKLWDALTGDEKHSF   99 (264)
Q Consensus        22 ~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~   99 (264)
                      -.|+|  .||+++|+++. +.+.+|+..+++.++.  +|.+.|.+++|+||+++|++++.|.  .|++||..+++.....
T Consensus         8 ~~fSP--~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3           8 EDFSP--LDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             EEEEE--CGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             ccccC--CCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee
Confidence            46775  48999998875 6899999998876653  6999999999999999988766553  8999999999888877


Q ss_pred             ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe---------eCCCeE
Q 024676          100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC---------TDSGGV  170 (264)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------~~d~~v  170 (264)
                      .|...+..++|+|++++|++++.++.+++|++.+++.. .....+...+..++|+|++..++.+.         ..++.+
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT-VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             CCCceEEeeeecccccccceecccccccccccccccee-eeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            89999999999999999999999999999999876532 34445667788899999887766543         233569


Q ss_pred             EEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECC
Q 024676          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDAN  216 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~  216 (264)
                      ++||+++++......+...+..+.++|+|++|+. +.++.+++||..
T Consensus       162 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             eeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            9999999987766667778889999999988765 556778888753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.9e-23  Score=167.73  Aligned_cols=240  Identities=15%  Similarity=0.152  Sum_probs=194.6

Q ss_pred             CCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcE-EEEecCCCeEEEEeCCCCc
Q 024676           17 RPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGD   94 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~-l~s~s~D~~v~iwd~~~~~   94 (264)
                      ..+..++|+|   ||++| ++++.++.|++||..+++.++++..|.. +..++|++++.+ ++++..++.+++|+..+++
T Consensus        32 ~~p~~va~sp---dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISP---DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECT---TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeC---CCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccce
Confidence            3457899986   99877 5778899999999999999999988764 578999999875 4677888999999999998


Q ss_pred             EEEEeecCCeEEEEEECCCCCEEEE-eeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676           95 EKHSFEHKHIVRACAFSEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      ....+.+......+.++|+++.++. +..++.+.+|+..+..... .. ........+++.+++..++++..+.+.+.+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (301)
T d1l0qa2         108 VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVI  185 (301)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceee-ec-ccCCCceEEEeeccccceeeecccccccccc
Confidence            8888888888899999999988765 4567889999987654322 22 2344577888888888888777777889999


Q ss_pred             ECCCCceeEEecCCCCEEEEEEcCCCcEEE-E-eC--CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCC-EEEEecC
Q 024676          174 DARSGKIVQTLETKSPVTSAEVSRDGRYIT-T-AD--GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGGE  248 (264)
Q Consensus       174 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~-~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gs~  248 (264)
                      +....+..........+..+.+++++..+. + .+  ++.|++||+.+++.+..+.....+..++++|+ |+ ++++++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spd-g~~l~va~~~  264 (301)
T d1l0qa2         186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPD-GKKVYVALSF  264 (301)
T ss_dssp             ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTT-SSEEEEEETT
T ss_pred             cccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCC-CCEEEEEECC
Confidence            999888877777777788999999997653 2 22  35799999999999988887777778888886 55 5578999


Q ss_pred             CCeEEEEEcCcceee
Q 024676          249 DMWVHVFDFHTGEQI  263 (264)
Q Consensus       249 d~~v~vwd~~~g~~i  263 (264)
                      |+.|++||+++|+.+
T Consensus       265 ~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         265 CNTVSVIDTATNTIT  279 (301)
T ss_dssp             TTEEEEEETTTTEEE
T ss_pred             CCeEEEEECCCCeEE
Confidence            999999999999875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.7e-24  Score=168.39  Aligned_cols=231  Identities=18%  Similarity=0.287  Sum_probs=167.6

Q ss_pred             cceEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus         8 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      ....+.+|+.+|.+|.|+     +++|++|+.|+.+++|+...+........+.....  .+.+....++++..++.+++
T Consensus        47 ~~~~l~~H~~~V~~v~~~-----~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  119 (293)
T d1p22a2          47 CKRILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAV  119 (293)
T ss_dssp             EEEEECCCSSCEEEEECC-----SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEE
T ss_pred             EEEEEecCCCCEeeeecc-----cceeecccccccccccccccccccccccccccccc--cccccccceeecccccceeE
Confidence            445668999999999874     57999999999999999999887766655544443  34455667889999999999


Q ss_pred             EeCCCCcEEEE----eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           88 WDALTGDEKHS----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        88 wd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      ||..+......    ..|...+..+.+.  ...+++++.|+.+++||+++++... ....+...+..+.+.  + ..+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~--~-~~l~~  193 (293)
T d1p22a2         120 WDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVR-TLNGHKRGIACLQYR--D-RLVVS  193 (293)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEEE--T-TEEEE
T ss_pred             eeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEE-EEcccccccccccCC--C-CeEEE
Confidence            99887653222    2366677776655  4568889999999999998766433 333455566666554  2 35677


Q ss_pred             eeCCCeEEEEECCCCceeEEecCCCC-EEEEEEcCCCcEEE-EeCCCcEEEEECCCc---------eeeeEEecCCC-Cc
Q 024676          164 CTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYIT-TADGSSVKFWDANHF---------GLVKGYNMPCN-TE  231 (264)
Q Consensus       164 ~~~d~~v~iwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~-~~~~~~i~iwd~~~~---------~~~~~~~~~~~-~~  231 (264)
                      +..|+.|++||+++.+.+........ +.  .+++++.+++ ++.|+.|++||++..         .+++.+..+.. ..
T Consensus       194 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~  271 (293)
T d1p22a2         194 GSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF  271 (293)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC
T ss_pred             ecCCCEEEEEecccceeeeeecccceeee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEE
Confidence            78889999999999998887765544 44  3556666655 567899999997532         34555544433 34


Q ss_pred             eeeEcCCCCCEEEEecCCCeEEEEE
Q 024676          232 SASLEPKLGNIFIAGGEDMWVHVFD  256 (264)
Q Consensus       232 ~~~~~~~~~~~~~~gs~d~~v~vwd  256 (264)
                      .+.+   ++.+|++||.|++|++||
T Consensus       272 ~v~~---d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         272 RLQF---DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEE---CSSCEEECCSSSEEEEEC
T ss_pred             EEEE---cCCEEEEEecCCEEEEeC
Confidence            4555   356899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.5e-25  Score=180.58  Aligned_cols=210  Identities=12%  Similarity=0.073  Sum_probs=142.6

Q ss_pred             ceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCc----EEEEeecCCeEEEEEECCC-CCEEEEeeCCCcE
Q 024676           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD----EKHSFEHKHIVRACAFSED-THLLLTGGFEKIL  126 (264)
Q Consensus        52 ~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i  126 (264)
                      +.++..++|++.|.+|+|+|++.+|+|||.|++|||||+.++.    ....+.|..+|.+++|+|+ +.++++|+.|+.+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            3456678999999999999999999999999999999987653    2344568999999999986 4578999999999


Q ss_pred             EEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCcee----EEecC---CCCEEEEEEcCCC
Q 024676          127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV----QTLET---KSPVTSAEVSRDG  199 (264)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----~~~~~---~~~v~~~~~s~~~  199 (264)
                      ++|++.....................+. .+...+++++.++.+++||++++...    .....   ........+.+++
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            9999976554333222222233333333 44556777788899999998764422    11111   1223344455555


Q ss_pred             cEE-EEeCCCcEEEEECCCceee-----------------------------------eEEecC----------------
Q 024676          200 RYI-TTADGSSVKFWDANHFGLV-----------------------------------KGYNMP----------------  227 (264)
Q Consensus       200 ~~l-~~~~~~~i~iwd~~~~~~~-----------------------------------~~~~~~----------------  227 (264)
                      ..+ .++.++.|++||++.....                                   ..+...                
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            444 4556788888887532210                                   000000                


Q ss_pred             -----------CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          228 -----------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       228 -----------~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                                 .....++++| .+.+|++||.||.|++||+.+++.+
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             eeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEE
Confidence                       0012345666 4789999999999999999998765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=2.9e-23  Score=169.59  Aligned_cols=230  Identities=11%  Similarity=0.022  Sum_probs=163.2

Q ss_pred             CCCeEEEEEeCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCC---
Q 024676           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKH---  103 (264)
Q Consensus        29 ~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~---  103 (264)
                      +++++|++++.|++|.+||+.+++.++++. .|...+.+++|+||++++ ++++.++.|++||+.+++....+....   
T Consensus         6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~   85 (346)
T d1jmxb_           6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   85 (346)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc
Confidence            599999999999999999999999999887 456677899999999876 778899999999999998777664321   


Q ss_pred             ----eEEEEEECCCCCEEEEee------------CCCcEEEeeCCCCCCCCe-EeccCCCCeEEEEEecCCCeEEEEeeC
Q 024676          104 ----IVRACAFSEDTHLLLTGG------------FEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTD  166 (264)
Q Consensus       104 ----~v~~~~~~~~~~~l~s~~------------~d~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~  166 (264)
                          .+..+.++|+++++++++            .+..+.+|+..+++.... ........+..+.+. ++..+++.+  
T Consensus        86 ~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--  162 (346)
T d1jmxb_          86 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA-DDGSLYVAG--  162 (346)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC-TTSCEEEES--
T ss_pred             ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec-CCCEEEEeC--
Confidence                245788999999988765            467788888765432211 111111122222222 233333221  


Q ss_pred             CCeEEEEECCCCceeEEe--------------------------------------------------------------
Q 024676          167 SGGVRLWDARSGKIVQTL--------------------------------------------------------------  184 (264)
Q Consensus       167 d~~v~iwd~~~~~~~~~~--------------------------------------------------------------  184 (264)
                       +.+.+||+.+++.+..+                                                              
T Consensus       163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         163 -PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             -SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             -CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence             23455554444333222                                                              


Q ss_pred             -------cCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEc
Q 024676          185 -------ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (264)
Q Consensus       185 -------~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~  257 (264)
                             .....+..+.+++++.+++...++.+.+||..+++.++.+.....+..++++++ |+++++++.|+.|++||+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~D-G~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSS-SSCEEEESBSSEEEEEET
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEC
Confidence                   122234556667777666655556899999999999998888777788889884 888999999999999999


Q ss_pred             Ccceee
Q 024676          258 HTGEQI  263 (264)
Q Consensus       258 ~~g~~i  263 (264)
                      .++|.+
T Consensus       321 ~t~~~i  326 (346)
T d1jmxb_         321 DTLEKV  326 (346)
T ss_dssp             TTTEEE
T ss_pred             ccCCEE
Confidence            999986

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.7e-22  Score=164.32  Aligned_cols=225  Identities=13%  Similarity=0.103  Sum_probs=170.9

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeeeC--CcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCC-----
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKH-----  103 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~--H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~-----  103 (264)
                      .||++++.|+.|.+||..+++.++++..  +...+..++|+||++++ ++++.|+.|.+||+.+++.+.......     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            5899999999999999999999988865  34557889999999886 678899999999999999887765321     


Q ss_pred             -eEEEEEECCCCCEEEEee------------CCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676          104 -IVRACAFSEDTHLLLTGG------------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus       104 -~v~~~~~~~~~~~l~s~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                       .+..++++|+++.++++.            .+..+.+||..+++.....  .....+..+++++++..++++ +  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~-~--~~~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF--EAPRQITMLAWARDGSKLYGL-G--RDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE--ECCSSCCCEEECTTSSCEEEE-S--SSE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec--cccCCceEEEEcCCCCEEEEE-c--CCc
Confidence             234689999999998776            3567888888765432222  234456678888877766554 3  457


Q ss_pred             EEEECCCCceeEEecC----------------------------------------------------------------
Q 024676          171 RLWDARSGKIVQTLET----------------------------------------------------------------  186 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~----------------------------------------------------------------  186 (264)
                      .+||..+++....+..                                                                
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            7888877665443311                                                                


Q ss_pred             ---CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          187 ---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       187 ---~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                         ...+..+.++|++.++.+. ++.|++||+++++.+..+.....+..+.++|+ |++|++++.|+.|++||+.++|++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~d-G~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTT-SCEEEEESBSSEEEEEETTTCCEE
T ss_pred             cCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEE
Confidence               0123344556777666554 47899999999999999988777788888884 889999999999999999999876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-22  Score=162.47  Aligned_cols=197  Identities=13%  Similarity=0.200  Sum_probs=145.8

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCC----------------------------------ceEEee
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----------------------------------DWIGTF   57 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~----------------------------------~~~~~~   57 (264)
                      ..+|+..|.++.+++    +..+++++.|+++++|+....                                  +.+..+
T Consensus        42 ~~~h~~~V~~~~~~~----~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (287)
T d1pgua2          42 HQDHSNLIVSLDNSK----AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV  117 (287)
T ss_dssp             ECCCCSCEEEEECCS----TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCCCEEEEEecC----CCeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeec
Confidence            367999999998874    345788999999888865321                                  111122


Q ss_pred             eCCcCCEEEEEECCCCcEEEEecCC-CeEEEEeCCCCcEEEEe--ecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCC
Q 024676           58 EGHKGAVWSCCLDANALFSASGSAD-FTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (264)
Q Consensus        58 ~~H~~~V~~v~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~  134 (264)
                      .. ...+  .++++++..++.++.| +.+++|++.........  .+..++.+++|+|++++|++|+.|+.+++||+.++
T Consensus       118 ~~-~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  194 (287)
T d1pgua2         118 RL-NSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR  194 (287)
T ss_dssp             EC-SSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cc-ccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc
Confidence            21 1222  3455566666555555 68999998766544443  36678999999999999999999999999999766


Q ss_pred             CCCCeEeccCCCCeEEEEEecCC---------CeEEEEeeCCCeEEEEECCCC-ceeEEec-CCCCEEEEEEcCCCcEEE
Q 024676          135 DAPPREVGNSSGSIRTVAWLHSD---------QTILSSCTDSGGVRLWDARSG-KIVQTLE-TKSPVTSAEVSRDGRYIT  203 (264)
Q Consensus       135 ~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~  203 (264)
                      +........|.+.+.+++|+|.+         ..++++++.|++|+|||++++ +.+..+. +...|.++.|+|++++++
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         195 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEE
T ss_pred             ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEE
Confidence            54333345678889999998643         457888899999999999874 4555554 456799999999998888


Q ss_pred             EeCCCcEEEEEC
Q 024676          204 TADGSSVKFWDA  215 (264)
Q Consensus       204 ~~~~~~i~iwd~  215 (264)
                      ++.|+.|++||+
T Consensus       275 ~g~D~~v~iW~i  286 (287)
T d1pgua2         275 SGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EECCCeEEEEEE
Confidence            899999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.9e-22  Score=171.06  Aligned_cols=249  Identities=11%  Similarity=0.027  Sum_probs=174.3

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceE--Ee---eeCCcCCEEEEEECCCCcEE-EEecCCC
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GT---FEGHKGAVWSCCLDANALFS-ASGSADF   83 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~--~~---~~~H~~~V~~v~~~~~~~~l-~s~s~D~   83 (264)
                      ..+.+|. .+.+|+|+|   ||++|++++.|+++++||+.+++..  .+   ..+|.+.+.+++|+||++++ +++..++
T Consensus        56 ~~l~~g~-~~~~vafSP---DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~  131 (426)
T d1hzua2          56 KVIDTGY-AVHISRMSA---SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP  131 (426)
T ss_dssp             EEEECCS-SEEEEEECT---TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             EEEeCCC-CeeEEEECC---CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCC
Confidence            3445554 588999996   9999999999999999999988743  23   34688888889999999986 5667899


Q ss_pred             eEEEEeCCCCcEEEEee------------cCCeEEEEEECCCCCEEEEeeCC-CcEEEeeCCCCCCCCeEeccCCCCeEE
Q 024676           84 TAKLWDALTGDEKHSFE------------HKHIVRACAFSEDTHLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRT  150 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~s~~~d-~~i~~~d~~~~~~~~~~~~~~~~~i~~  150 (264)
                      ++++||..++..+....            +......+..++++..++....+ +.+.+++.............+...+..
T Consensus       132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  211 (426)
T d1hzua2         132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD  211 (426)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEE
T ss_pred             eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEe
Confidence            99999999988766553            22335566777877777765543 556666655444333333345567788


Q ss_pred             EEEecCCCeEEEEeeCCCeEEEEECCCCceeEEe----------------------------------------------
Q 024676          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----------------------------------------------  184 (264)
Q Consensus       151 ~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----------------------------------------------  184 (264)
                      +.+.+++..++++...+..+.++|..+++.+...                                              
T Consensus       212 ~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~  291 (426)
T d1hzua2         212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY  291 (426)
T ss_dssp             EEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT
T ss_pred             eeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccc
Confidence            8888888877777777777888887765543221                                              


Q ss_pred             --------cC-CCCEEEEEEcCCCcEEEEe--------CCCcEEEEECCCceeeeEEe-------c---CCCCceeeEcC
Q 024676          185 --------ET-KSPVTSAEVSRDGRYITTA--------DGSSVKFWDANHFGLVKGYN-------M---PCNTESASLEP  237 (264)
Q Consensus       185 --------~~-~~~v~~~~~s~~~~~l~~~--------~~~~i~iwd~~~~~~~~~~~-------~---~~~~~~~~~~~  237 (264)
                              .. ...+.+++++|++++++..        .+++|++||+.+++.+.++.       .   ........|+|
T Consensus       292 ~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp  371 (426)
T d1hzua2         292 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  371 (426)
T ss_dssp             BTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred             cceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC
Confidence                    11 1236778899999998752        25789999999887765542       1   11123445777


Q ss_pred             CCCCEE-EE----ecCCCeEEEEEcCcceee
Q 024676          238 KLGNIF-IA----GGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       238 ~~~~~~-~~----gs~d~~v~vwd~~~g~~i  263 (264)
                      + |+++ ++    +++|+.|+|||.+|++.+
T Consensus       372 D-Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         372 R-GDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             S-SSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             C-CCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            5 6644 44    357899999999999853

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=9.4e-21  Score=151.76  Aligned_cols=226  Identities=10%  Similarity=0.091  Sum_probs=180.0

Q ss_pred             EEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCC
Q 024676           35 VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED  113 (264)
Q Consensus        35 ~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  113 (264)
                      ++++.|++|.+||..+++.++++... +....++|+||++++ ++++.++.|++||+.+++.+..++....+..+.++++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~   84 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD   84 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccc
Confidence            57789999999999999999988754 456889999999876 6888999999999999999888877677889999999


Q ss_pred             CCEEEE-eeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEE
Q 024676          114 THLLLT-GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTS  192 (264)
Q Consensus       114 ~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~  192 (264)
                      ++.++. +..++.+.+|+..+++.. ... ........+.+.+++..+++++..++.+.+|+..+++.+..+.....+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVA-GTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG  162 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEE-EEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred             cccccccccccceeeecccccceee-eec-cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceE
Confidence            987665 456788999998765432 222 33456778889998888888888889999999999999888887778899


Q ss_pred             EEEcCCCcEEEE-eC-CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe--cCCCeEEEEEcCcceee
Q 024676          193 AEVSRDGRYITT-AD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG--GEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       193 ~~~s~~~~~l~~-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--s~d~~v~vwd~~~g~~i  263 (264)
                      +.++|++..+.. .. +..+.+|+....+....+.....+....+.++....++++  +.++.|++||..+++.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             EEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            999999976544 33 4678889988888887777776666777877533333332  44578999999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=3.7e-21  Score=163.52  Aligned_cols=196  Identities=13%  Similarity=0.101  Sum_probs=152.2

Q ss_pred             CCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEE--EEee----cCC
Q 024676           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK--HSFE----HKH  103 (264)
Q Consensus        30 ~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--~~~~----~~~  103 (264)
                      +..++++.+.|++|.+||..+++.++.+..|. .++.++|+|||++++++++|+++++||+.+++..  ..++    |..
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            44567999999999999999999999998774 6899999999999999999999999999887633  3333    333


Q ss_pred             eEEEEEECCCCCEE-EEeeCCCcEEEeeCCCCCCCCeEec----------cCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676          104 IVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVG----------NSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus       104 ~v~~~~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      .+....|+|++++| +++..++.+++||..+++.......          ...+....+.+++++..++++..++++|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            44555667899986 5677899999999987664322211          123455667788888888888888899999


Q ss_pred             EECCCCcee--EEecCCCCEEEEEEcCCCcEEEE-eC-CCcEEEEECCCceeeeEEec
Q 024676          173 WDARSGKIV--QTLETKSPVTSAEVSRDGRYITT-AD-GSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       173 wd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~-~~-~~~i~iwd~~~~~~~~~~~~  226 (264)
                      ||..+++..  ..+.....+..++++|+|+++++ +. +..+.++|..+++.+..+..
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence            999987744  34555567889999999987644 33 56899999998887766654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=2.5e-21  Score=164.08  Aligned_cols=190  Identities=13%  Similarity=0.154  Sum_probs=135.9

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE--ee----cCCe
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS--FE----HKHI  104 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~----~~~~  104 (264)
                      ..++++.+.|++|++||..+++.+.+|..|. .+..++|+|||+++++++.|+++++||+.+++....  ++    |...
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            4467899999999999999999999999874 589999999999999999999999999998875443  32    3344


Q ss_pred             EEEEEECCCCCEEEEe-eCCCcEEEeeCCCCCCCCeEec----------cCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676          105 VRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPPREVG----------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus       105 v~~~~~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      +..+.|+|++++++++ ..++.+++||..+.+.......          .+.+....+..++++..++.+..+.+.+.++
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            5666778899987655 5789999999887654322211          1223334455556555555555555677777


Q ss_pred             ECCCCce--eEEecCCCCEEEEEEcCCCcEEEEe--CCCcEEEEECCCceee
Q 024676          174 DARSGKI--VQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLV  221 (264)
Q Consensus       174 d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~~~~  221 (264)
                      +......  +........+..+.++|+++++..+  .+..+.+++..+++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~  242 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  242 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE
Confidence            7665543  2334455668889999999876443  3457778887765543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=6.2e-22  Score=162.55  Aligned_cols=214  Identities=14%  Similarity=0.083  Sum_probs=160.8

Q ss_pred             eEeeccCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEE----------e
Q 024676           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSAS----------G   79 (264)
Q Consensus        10 ~~~~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s----------~   79 (264)
                      ....+|...|.+++|+|   ||++|++++.++.+++|+..+++....+..|...+.+++|+|++++++.          +
T Consensus        79 ~~~~~~~~~v~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDR---NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  155 (360)
T ss_dssp             EECCCCCCSEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             EEeeCCCceEEeeeecc---cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence            34468999999999996   9999999999999999999999988899999999999999999999874          3


Q ss_pred             cCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCC----C--eEe------------
Q 024676           80 SADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP----P--REV------------  141 (264)
Q Consensus        80 s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~----~--~~~------------  141 (264)
                      ..++.+++||..+++......+...+..+.|+|+++.|++++.|+.+++|+.......    .  ...            
T Consensus       156 ~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL  235 (360)
T ss_dssp             CCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred             ccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceE
Confidence            4556799999999887777778888999999999999999999999999985422100    0  000            


Q ss_pred             ------------------------ccCCCCeEEEEEecCCC------------eEEEEeeCCCeEEEEECCCCceeEEec
Q 024676          142 ------------------------GNSSGSIRTVAWLHSDQ------------TILSSCTDSGGVRLWDARSGKIVQTLE  185 (264)
Q Consensus       142 ------------------------~~~~~~i~~~~~~~~~~------------~~~~~~~~d~~v~iwd~~~~~~~~~~~  185 (264)
                                              ....+....+...+.+.            .++++++.++.|++||+++++..... 
T Consensus       236 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-  314 (360)
T d1k32a3         236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-  314 (360)
T ss_dssp             CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-
T ss_pred             CCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec-
Confidence                                    00011122222221111            12334556789999999988754322 


Q ss_pred             CCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC
Q 024676          186 TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN  229 (264)
Q Consensus       186 ~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~  229 (264)
                        ..+..++|||||++|++ +.|+.|++||+++++...++.....
T Consensus       315 --~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~  357 (360)
T d1k32a3         315 --NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKR  357 (360)
T ss_dssp             --EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSS
T ss_pred             --CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccc
Confidence              35889999999988765 5689999999999887766655433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.3e-20  Score=148.91  Aligned_cols=207  Identities=16%  Similarity=0.136  Sum_probs=154.5

Q ss_pred             ccCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCCcC-----CEEEEEECCCCcEEEEec-------
Q 024676           14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKG-----AVWSCCLDANALFSASGS-------   80 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H~~-----~V~~v~~~~~~~~l~s~s-------   80 (264)
                      .+...+.+++|+|   ||++| ++++.++.|.+||..+++.+..+..+..     .+..++|+|++++++.++       
T Consensus        31 ~~~~~~~~i~~sp---Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~  107 (337)
T d1pbyb_          31 DAGPTPMVPMVAP---GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL  107 (337)
T ss_dssp             TCTTCCCCEEECT---TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred             CCCCCccEEEECC---CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCccee
Confidence            3455678899996   99887 5778899999999999998888766543     345689999999987765       


Q ss_pred             -----CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe----------------
Q 024676           81 -----ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR----------------  139 (264)
Q Consensus        81 -----~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~----------------  139 (264)
                           .+..+.+||..++..+..+.....+..++++|+++++++++.+  +.+||..+++....                
T Consensus       108 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  185 (337)
T d1pbyb_         108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDV  185 (337)
T ss_dssp             SCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred             eeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCc
Confidence                 4678999999999988888888888899999999999988754  56677653211000                


Q ss_pred             -------------------------------------------------EeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 024676          140 -------------------------------------------------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (264)
Q Consensus       140 -------------------------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v  170 (264)
                                                                       ...++........+.+++. ++.+.  ++.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i  262 (337)
T d1pbyb_         186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEE
T ss_pred             ceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccE
Confidence                                                             0001111223333333333 33332  4789


Q ss_pred             EEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCC
Q 024676          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC  228 (264)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~  228 (264)
                      ++||+++++.+..+.....+.+++|+|||+++.. +.++.|++||.++.+.++.++.+.
T Consensus       263 ~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         263 ESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence            9999999999988887778899999999987755 457899999999999999988753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=2.5e-18  Score=142.07  Aligned_cols=240  Identities=13%  Similarity=0.031  Sum_probs=166.5

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEE-----eCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEec-------
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSA-----SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-------   80 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~-----s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s-------   80 (264)
                      .+|..++..++++|   ||+.++..     +.++.+.+||..+++.+.++.++..+  .++|+|||+++++++       
T Consensus        17 ~~~~~p~~~~a~sp---dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGA---DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCC---CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccc
Confidence            46889999999885   99887664     23456888999999999998877654  689999999987764       


Q ss_pred             ---CCCeEEEEeCCCCcEEEEeecCC-e-------EEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCC
Q 024676           81 ---ADFTAKLWDALTGDEKHSFEHKH-I-------VRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGS  147 (264)
Q Consensus        81 ---~D~~v~iwd~~~~~~~~~~~~~~-~-------v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~  147 (264)
                         .++.|++||..+++....+.... .       ...+.++++++.++....  ++.+.+|+....+..     .+...
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~  166 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD-----QLLSS  166 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE-----EEecc
Confidence               56889999999998877664222 1       245678888887766543  467788887543321     11223


Q ss_pred             eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC---------------------------C-------------
Q 024676          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---------------------------K-------------  187 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---------------------------~-------------  187 (264)
                      ..++.+.+++...+++.+.|+.+.+||..+++.......                           .             
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA  246 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE
Confidence            456677777777777777788898888766543321100                           0             


Q ss_pred             --------------------CCEEEEEEcCCCcEEE-----------EeCCCcEEEEECCCceeeeEEecCCCCceeeEc
Q 024676          188 --------------------SPVTSAEVSRDGRYIT-----------TADGSSVKFWDANHFGLVKGYNMPCNTESASLE  236 (264)
Q Consensus       188 --------------------~~v~~~~~s~~~~~l~-----------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  236 (264)
                                          .....+.++|++..+.           ...++.+.+||..+++.+..+.....+....++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~s  326 (373)
T d2madh_         247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVA  326 (373)
T ss_pred             EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEEC
Confidence                                0011223444443221           223456888999888888888776677777888


Q ss_pred             CCCCC--EEEEecCCCeEEEEEcCcceee
Q 024676          237 PKLGN--IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       237 ~~~~~--~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++ |+  ++++++.|+.|++||+.+|+++
T Consensus       327 pD-G~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         327 QD-GGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CC-CCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            75 55  4678999999999999999986

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3e-18  Score=145.40  Aligned_cols=193  Identities=14%  Similarity=0.084  Sum_probs=144.3

Q ss_pred             CCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-Eec---cCC
Q 024676           70 DANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVG---NSS  145 (264)
Q Consensus        70 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~---~~~  145 (264)
                      +.+..++++.+.|++|.|||..+++.+..++....+..++|+|+++++++++.|+.+++||+++++.... .+.   .+.
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            3445667999999999999999999999998777899999999999999999999999999987664332 221   122


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC------------CCCEEEEEEcCCCcEE-EEe-CCCcEE
Q 024676          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------------KSPVTSAEVSRDGRYI-TTA-DGSSVK  211 (264)
Q Consensus       146 ~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l-~~~-~~~~i~  211 (264)
                      +.+....|+|++..+++++..+++|++||.++++++..+..            ......+.++|+|..+ ++. .++.|.
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            22333344567777888888899999999999998766532            2346678899999765 333 468999


Q ss_pred             EEECCCceeee--EEecCCCCceeeEcCCCCCE-EEEecCCCeEEEEEcCcceee
Q 024676          212 FWDANHFGLVK--GYNMPCNTESASLEPKLGNI-FIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       212 iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      +||..+.+..+  .+.....+....++|+ |++ +++...+..+.++|.++++.+
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spd-g~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EEEccCCCcceEEEEcccCccccceECCC-CCEEEEeccccceEEEeecccceEE
Confidence            99998766443  4444444556778875 664 555566778999999887764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.5e-16  Score=128.71  Aligned_cols=245  Identities=16%  Similarity=0.153  Sum_probs=164.3

Q ss_pred             eccCCCeeeeEeccCCCCCeEEE-EEeCCCCcEEEeCCCCceEEeee---CCcCCEEEEEECCCCcEEEEec-CCCeEEE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLV-SASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSASGS-ADFTAKL   87 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~-t~s~d~~v~i~~~~~~~~~~~~~---~H~~~V~~v~~~~~~~~l~s~s-~D~~v~i   87 (264)
                      ..|.+.+..|+|+|   ||++|+ ++..|+.|++|++.......++.   .+...+..++|+||++++++++ .++++++
T Consensus        33 ~~~~~~v~~la~sp---DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          33 VDVPGQVQPMVVSP---DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV  109 (333)
T ss_dssp             EECSSCCCCEEECT---TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EcCCCCEeEEEEeC---CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceee
Confidence            46888999999996   999885 45558999999987664332322   2334566799999999987776 5779999


Q ss_pred             EeCCCCcEEEEe---ecCCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCeE-----eccCCCCeEEEEEecCCC
Q 024676           88 WDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE-----VGNSSGSIRTVAWLHSDQ  158 (264)
Q Consensus        88 wd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~  158 (264)
                      |+..........   .+...+..+.++|++++++.++. +..+.+|+..........     ..........+++.+++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         110 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             eccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence            998776543332   34556778899999999888775 467899997654332211     112234456788888777


Q ss_pred             eEEEEeeCCCeEEEEECCCCce----eEEe-------cCCCCEEEEEEcCCCcEEEE-e-CCCcEEEEECCCceee----
Q 024676          159 TILSSCTDSGGVRLWDARSGKI----VQTL-------ETKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFGLV----  221 (264)
Q Consensus       159 ~~~~~~~~d~~v~iwd~~~~~~----~~~~-------~~~~~v~~~~~s~~~~~l~~-~-~~~~i~iwd~~~~~~~----  221 (264)
                      ..+.+....+...+|+......    ....       ........+.++++++++.. . .++.+.+|++......    
T Consensus       190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (333)
T d1ri6a_         190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  269 (333)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE
Confidence            7777777778888988754321    1121       11234677889999987543 3 3578999988654322    


Q ss_pred             eEEecCCCCceeeEcCCCCCEE-EEecCCCeEEEE--EcCcce
Q 024676          222 KGYNMPCNTESASLEPKLGNIF-IAGGEDMWVHVF--DFHTGE  261 (264)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~-~~gs~d~~v~vw--d~~~g~  261 (264)
                      ........+..++++|+ |++| ++++.++.|++|  |..+|+
T Consensus       270 ~~~~~~~~p~~~a~spD-Gk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         270 GFQPTETQPRGFNVDHS-GKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             EEEECSSSCCCEEECTT-SSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             EEeCCCCCeeEEEEeCC-CCEEEEEECCCCeEEEEEEECCCCc
Confidence            22222344567788885 6655 455667999999  555664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=2.5e-17  Score=133.82  Aligned_cols=213  Identities=10%  Similarity=0.024  Sum_probs=142.7

Q ss_pred             ccCCCeeeeEeccCCCCCeEE-EEEeCCCCcEEEeCCCCceEEeeeCC------cCCEEEEEECCCCcEEEEec------
Q 024676           14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGH------KGAVWSCCLDANALFSASGS------   80 (264)
Q Consensus        14 ~h~~~v~~~~~~~~~~~g~~l-~t~s~d~~v~i~~~~~~~~~~~~~~H------~~~V~~v~~~~~~~~l~s~s------   80 (264)
                      .|...+.+|.|+|   ||++| ++++.++.|.+||..+++.+..+...      ...+..++|+||+++++.++      
T Consensus        37 ~~~~~p~~l~~sp---DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~  113 (346)
T d1jmxb_          37 PDKFGPGTAMMAP---DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL  113 (346)
T ss_dssp             SSCCSSCEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             CCCCCcceEEECC---CCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcce
Confidence            4556678999996   99876 66678999999999999887766432      22345789999998886554      


Q ss_pred             ------CCCeEEEEeCCCCcEEEEe---ecCCeEEEE--------------------------------------EECCC
Q 024676           81 ------ADFTAKLWDALTGDEKHSF---EHKHIVRAC--------------------------------------AFSED  113 (264)
Q Consensus        81 ------~D~~v~iwd~~~~~~~~~~---~~~~~v~~~--------------------------------------~~~~~  113 (264)
                            .+..+.+|+..++.....+   .....+..+                                      .++|+
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPD  193 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred             eeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEecc
Confidence                  4677888877654321111   011111111                                      12222


Q ss_pred             CCEE--------------------------EEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676          114 THLL--------------------------LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus       114 ~~~l--------------------------~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      +..+                          .++..+..+.+||+.++.........+...+....+++++..++.. .. 
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  271 (346)
T d1jmxb_         194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG-VL-  271 (346)
T ss_dssp             CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE-EE-
T ss_pred             ccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEe-cC-
Confidence            2111                          1222233455666655544333344455567777788877776544 33 


Q ss_pred             CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCCCc
Q 024676          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTE  231 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~  231 (264)
                      +.|++||+.+++.+..+.....+.+++|+|||+++.. +.++.|++||.++++.++.++.+....
T Consensus       272 ~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~~  336 (346)
T d1jmxb_         272 NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM  336 (346)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSCC
T ss_pred             CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCCc
Confidence            6899999999999888877778999999999987655 558899999999999999998866543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=4.5e-16  Score=127.22  Aligned_cols=232  Identities=15%  Similarity=0.058  Sum_probs=155.2

Q ss_pred             eeEeccCCCCCeEEEEE----------eCCCCcEEEeCCCCceEEeeeCCcC-------CEEEEEECCCCcEEEEe--cC
Q 024676           21 DLFYSPITPDGFFLVSA----------SKDSSPMLRNGETGDWIGTFEGHKG-------AVWSCCLDANALFSASG--SA   81 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~----------s~d~~v~i~~~~~~~~~~~~~~H~~-------~V~~v~~~~~~~~l~s~--s~   81 (264)
                      .++|+|   ||++|+.+          +.|+.|++||..+++.+..+..+..       ....++|++++.+++.+  +.
T Consensus        51 ~~a~Sp---Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          51 NPVVAD---DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             EEEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             ceEEcC---CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence            678885   99988764          4578999999999998877654322       22457899999876554  56


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCeE--------EEEEECCCCCEEEEee-CCCcEEEeeCCCCCCCCeEeccCCCCeEEEE
Q 024676           82 DFTAKLWDALTGDEKHSFEHKHIV--------RACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~  152 (264)
                      +..+.+|+..+++....+......        ..+.++++++.++... .++.+.+++.......      +...+....
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  201 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE------DEFLINHPA  201 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT------TSCBCSCCE
T ss_pred             CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce------ecceeeecc
Confidence            789999999999877776543322        2345666666655433 3344555554332221      111223345


Q ss_pred             EecCCCeEEEEeeCCCeEEEEECCCCceeE--EecCC-----------CCEEEEEEcCCCcEEEE-e-CC---------C
Q 024676          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETK-----------SPVTSAEVSRDGRYITT-A-DG---------S  208 (264)
Q Consensus       153 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--~~~~~-----------~~v~~~~~s~~~~~l~~-~-~~---------~  208 (264)
                      +.+++..++ .++.++.+.+|++.+++...  .....           .....++++|++..+.. . .+         .
T Consensus       202 ~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         202 YSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             EETTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             ccCCCCeEE-EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence            566555544 55677999999999876432  11110           12335788999876532 2 11         3


Q ss_pred             cEEEEECCCceeeeEEecCCCCceeeEcCCCCC--EEEEecCCCeEEEEEcCcceee
Q 024676          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGN--IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .|.+||..+++.+..+.....+..+.++|+ |+  ++++++.|+.|++||..+|+++
T Consensus       281 ~v~v~d~~t~~~~~~~~~~~~~~~~a~spD-G~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMGHEIDSINVSQD-EKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEEEEECEEEECCS-SSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eEEEEeCCCCcEEEEecCCCCEEEEEEcCC-CCeEEEEEECCCCEEEEEECCCCCEE
Confidence            689999999998888876666667888885 54  5678888999999999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.8e-15  Score=122.23  Aligned_cols=227  Identities=10%  Similarity=0.120  Sum_probs=152.8

Q ss_pred             EEEEEeCCCCcEEEeCCCCce---EEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEE----EeecCCe
Q 024676           33 FLVSASKDSSPMLRNGETGDW---IGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKH----SFEHKHI  104 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~---~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~----~~~~~~~  104 (264)
                      .+++++.|++|++|++.....   ++.+ .|.+.|..++|+||+++| +++..|+.|++|++.......    ...+...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            457888999999999865432   3333 478899999999999988 566679999999987654222    2234455


Q ss_pred             EEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCC-eEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeE
Q 024676          105 VRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ  182 (264)
Q Consensus       105 v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~  182 (264)
                      +..++++|++++|++++. ++.+.+|+........ .....+...+..+.+++++..++.....+..|.+|+..+.....
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            678999999999998875 6788988875443221 12233445567778888888777777777889999987754322


Q ss_pred             -------EecCCCCEEEEEEcCCCcEEEEe--CCCcEEEEECCCc----eeeeEEec-C------CCCceeeEcCCCCCE
Q 024676          183 -------TLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHF----GLVKGYNM-P------CNTESASLEPKLGNI  242 (264)
Q Consensus       183 -------~~~~~~~v~~~~~s~~~~~l~~~--~~~~i~iwd~~~~----~~~~~~~~-~------~~~~~~~~~~~~~~~  242 (264)
                             ..........+++++++.++...  ..+...+|+....    ........ +      ..+....+.++...+
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence                   11233457889999999876543  3457777776432    11222211 1      112234566654456


Q ss_pred             EEEecCCCeEEEEEcCcc
Q 024676          243 FIAGGEDMWVHVFDFHTG  260 (264)
Q Consensus       243 ~~~gs~d~~v~vwd~~~g  260 (264)
                      ++++..++.+.+|++...
T Consensus       245 ~~~~~~~~~~~~~~~~~~  262 (333)
T d1ri6a_         245 YACDRTASLITVFSVSED  262 (333)
T ss_dssp             EEEETTTTEEEEEEECTT
T ss_pred             eeecccCCeEEEEEEcCC
Confidence            677888899999987643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=9e-14  Score=114.24  Aligned_cols=209  Identities=15%  Similarity=0.012  Sum_probs=137.5

Q ss_pred             eeEeccCCCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeCCcCCE-------EEEEECCCCcEEEE--ecC
Q 024676           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHKGAV-------WSCCLDANALFSAS--GSA   81 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~H~~~V-------~~v~~~~~~~~l~s--~s~   81 (264)
                      .++|+|   ||++|++++          .++.+.+||..+++.+..+..+....       ..+.|+++++.++.  ...
T Consensus        70 ~~a~Sp---DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          70 NPVAAH---SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             cEEEcC---CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            688885   999998875          46789999999999988887765554       34677788776543  345


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEE-EEeeCCCcEEEeeCCCCCCCCeEec------------------
Q 024676           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVG------------------  142 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~~~~~------------------  142 (264)
                      ++.+.+|+..+.......   .....+.++|+++.+ ++.+.|+.+.+|+....+.......                  
T Consensus       147 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             CCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC
Confidence            667888887776543332   234556677776554 4566778888887643321110000                  


Q ss_pred             -------cCC---------------------------------CCeEEEEEecCCC---------eEEEEeeCCCeEEEE
Q 024676          143 -------NSS---------------------------------GSIRTVAWLHSDQ---------TILSSCTDSGGVRLW  173 (264)
Q Consensus       143 -------~~~---------------------------------~~i~~~~~~~~~~---------~~~~~~~~d~~v~iw  173 (264)
                             ...                                 .....+++.+++.         ..++....++.+.+|
T Consensus       224 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence                   000                                 0001112222222         222344455789999


Q ss_pred             ECCCCceeEEecCCCCEEEEEEcCCCcE--EEE-eCCCcEEEEECCCceeeeEEec-CCCCceeeE
Q 024676          174 DARSGKIVQTLETKSPVTSAEVSRDGRY--ITT-ADGSSVKFWDANHFGLVKGYNM-PCNTESASL  235 (264)
Q Consensus       174 d~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~-~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~  235 (264)
                      |..+++.+..+.....+..++|+|||+.  +++ +.+++|++||+.+++.++.+.. ...+..+++
T Consensus       304 d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         304 TGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             ECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence            9999999988888888999999999973  344 4578999999999999998864 445555544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=6.4e-15  Score=121.64  Aligned_cols=235  Identities=9%  Similarity=-0.062  Sum_probs=148.3

Q ss_pred             eeEeccCCCCCeEEEEEe----------CCCCcEEEeCCCCceEEeeeCCcCC-------EEEEEECCCCcEEEEec-CC
Q 024676           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHKGA-------VWSCCLDANALFSASGS-AD   82 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s----------~d~~v~i~~~~~~~~~~~~~~H~~~-------V~~v~~~~~~~~l~s~s-~D   82 (264)
                      .++|+|   ||++|+.++          .|+.|++||..+++.++.+..|...       ...++|+||+++++.++ .+
T Consensus        69 ~~a~sp---Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~  145 (368)
T d1mdah_          69 LAVAGH---SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             EEEECT---TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             cceECC---CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC
Confidence            477775   999888754          4778999999999988877644322       23589999999887664 67


Q ss_pred             CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe-----ccCCCCeEEEEEecCC
Q 024676           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-----GNSSGSIRTVAWLHSD  157 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~  157 (264)
                      +.+.+||+.+++.............  .......+++.+.|+.+.++++..........     ..+........+.+ +
T Consensus       146 ~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  222 (368)
T d1mdah_         146 SAAAGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-P  222 (368)
T ss_dssp             SCEEEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-T
T ss_pred             CeEEEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-C
Confidence            9999999999987776653322110  11123455566677777777765433221111     11122223333333 3


Q ss_pred             CeEEEEeeCCCeEEEEECCCCceeEEecCC-------------CCEEEEEEcCCCcEEE--EeCC--------CcEEEEE
Q 024676          158 QTILSSCTDSGGVRLWDARSGKIVQTLETK-------------SPVTSAEVSRDGRYIT--TADG--------SSVKFWD  214 (264)
Q Consensus       158 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~--~~~~--------~~i~iwd  214 (264)
                      ...+.+  ..+.+.++++..++........             .....++++|++..+.  ...+        ..|.+||
T Consensus       223 g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         223 GMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             TEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             cEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence            333332  2366777777665543322110             1123477888876542  2211        2588999


Q ss_pred             CCCceeeeEEecCCCCceeeEcCCCCC-EEEEecCCCeEEEEEcCcceee
Q 024676          215 ANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ..+++.+..+.....+..+.++++... ++++++.|+.|++||..+|+.+
T Consensus       301 ~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         301 ASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            999988887766555666788885333 5678889999999999999976

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.47  E-value=4.3e-14  Score=118.22  Aligned_cols=231  Identities=9%  Similarity=-0.003  Sum_probs=156.1

Q ss_pred             CCCeE-EEEEeCCCCcEEEeCCCCceEEeee------------------------------CCcCCEEEEEECCCCcEE-
Q 024676           29 PDGFF-LVSASKDSSPMLRNGETGDWIGTFE------------------------------GHKGAVWSCCLDANALFS-   76 (264)
Q Consensus        29 ~~g~~-l~t~s~d~~v~i~~~~~~~~~~~~~------------------------------~H~~~V~~v~~~~~~~~l-   76 (264)
                      .|+.| +++++.+|+|++|++.+++.++++-                              .|.-......++|||+++ 
T Consensus         8 ~De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lf   87 (441)
T d1qnia2           8 LDEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLF   87 (441)
T ss_dssp             CCSEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEE
Confidence            34444 5788899999999998887665541                              122223344457899887 


Q ss_pred             EEecCCCeEEEEeCCCCcEEEEe--ecCCeEEEEEECCCCCEE--EEeeCCC-----------------cEEEeeCCCCC
Q 024676           77 ASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLL--LTGGFEK-----------------ILRIFDLNRPD  135 (264)
Q Consensus        77 ~s~s~D~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l--~s~~~d~-----------------~i~~~d~~~~~  135 (264)
                      ++...+..|.++|+.+++.....  +.......++++|+++.+  +..+.+.                 .+..+|..+.+
T Consensus        88 V~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~  167 (441)
T d1qnia2          88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD  167 (441)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred             EEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence            66778899999999999876654  456789999999998844  3333322                 13446665544


Q ss_pred             CCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEEC
Q 024676          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (264)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~  215 (264)
                      ...+..  ..+....+.+.|++++.++++.....+..+|..+.+.+..+........+.++|+|+++..+.++.+.+++.
T Consensus       168 v~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~  245 (441)
T d1qnia2         168 VAWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR  245 (441)
T ss_dssp             EEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred             eeEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc
Confidence            332222  234566778889888888777665555555655555443332212222345678999887776778888887


Q ss_pred             CCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          216 NHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ...+.+..+..+..+--+.++|++..+++++..|++|.+||+++.+
T Consensus       246 ~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         246 GESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             SSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred             cCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence            7777777777766676778888644456789999999999987654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=1.2e-11  Score=100.37  Aligned_cols=200  Identities=16%  Similarity=0.103  Sum_probs=129.2

Q ss_pred             eeeEeccCCCCCeEEEEEe--CCCCcEEEeCCCCceEEeeeCCcCC-------EEEEEECCCCcEEE-EecCCCeEEEEe
Q 024676           20 VDLFYSPITPDGFFLVSAS--KDSSPMLRNGETGDWIGTFEGHKGA-------VWSCCLDANALFSA-SGSADFTAKLWD   89 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s--~d~~v~i~~~~~~~~~~~~~~H~~~-------V~~v~~~~~~~~l~-s~s~D~~v~iwd   89 (264)
                      ..+.|+|   +|++++.++  .+..+.+|+..+++.+..+..+...       ...+.+++|+..++ ....++.+.+++
T Consensus       109 ~~~~~s~---dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~  185 (355)
T d2bbkh_         109 WMTSLTP---DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH  185 (355)
T ss_dssp             GGEEECT---TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             ceEEEec---CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEe
Confidence            4567775   888877765  4557888999999888777654322       22344555544432 233334444444


Q ss_pred             CCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccC----------CCCeEEEEEecCCC
Q 024676           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNS----------SGSIRTVAWLHSDQ  158 (264)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~----------~~~i~~~~~~~~~~  158 (264)
                      ......    .+...+....+.+++..++.++.++.+.+|++..++.... ....+          ......+++.+++.
T Consensus       186 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         186 TEVFHP----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             CCCCSC----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             cccccc----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence            332221    1222344456777888888899999999999876543111 00000          01123456677766


Q ss_pred             eEEEEeeCC---------CeEEEEECCCCceeEEecCCCCEEEEEEcCCCc--EEEEe-CCCcEEEEECCCceeeeEEec
Q 024676          159 TILSSCTDS---------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITTA-DGSSVKFWDANHFGLVKGYNM  226 (264)
Q Consensus       159 ~~~~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~-~~~~i~iwd~~~~~~~~~~~~  226 (264)
                      .+++.....         +.|.+||..+++.+..+.....+.+++++|||+  +++++ .++.|++||+++++.++++..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            665544332         379999999999888887766788999999996  34444 468999999999999998864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=6.9e-12  Score=103.07  Aligned_cols=208  Identities=12%  Similarity=-0.013  Sum_probs=132.9

Q ss_pred             eeEeccCCCCCeEEEEEe-CCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe
Q 024676           21 DLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s-~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~   99 (264)
                      .++|+|   ||++|+.+. .++.+.+||+.+++.+..+..+......   ......++..+.|+++..|+..........
T Consensus       128 ~~a~Sp---DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~  201 (368)
T d1mdah_         128 IIGNCA---SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             SEEECT---TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             ceEECC---CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc---cCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence            577875   999888776 5789999999999988888766544311   112345566778888888887654322221


Q ss_pred             e-------cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec-----------cCCCCeEEEEEecCCCeEE
Q 024676          100 E-------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-----------NSSGSIRTVAWLHSDQTIL  161 (264)
Q Consensus       100 ~-------~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~~~  161 (264)
                      .       +...+....+.+++..+.+.  .+.+.++++...........           ...+....+++.+++..++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~  279 (368)
T d1mdah_         202 VGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             eecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEE
Confidence            1       12223455667777655543  34455555543322110000           0001123356677666655


Q ss_pred             EEeeCC--------CeEEEEECCCCceeEEecCCCCEEEEEEcCCCc-E-EEE-eCCCcEEEEECCCceeeeEEecCCCC
Q 024676          162 SSCTDS--------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-Y-ITT-ADGSSVKFWDANHFGLVKGYNMPCNT  230 (264)
Q Consensus       162 ~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~-l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~  230 (264)
                      +....+        ..|.+||..+++.+..+.....+..++++|||+ + +++ ..++.|++||..+++.++.+.....+
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P  359 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP  359 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCC
Confidence            543322        359999999999888777666788999999996 3 344 34689999999999999999887666


Q ss_pred             ceeeEc
Q 024676          231 ESASLE  236 (264)
Q Consensus       231 ~~~~~~  236 (264)
                      ..+.+.
T Consensus       360 ~~l~~~  365 (368)
T d1mdah_         360 ESLSVQ  365 (368)
T ss_dssp             CEEECC
T ss_pred             CEEEEe
Confidence            666553

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.32  E-value=3.7e-10  Score=94.13  Aligned_cols=222  Identities=10%  Similarity=-0.028  Sum_probs=145.4

Q ss_pred             CCCCCeEEEEE-eCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCc--EEEEecCCC-----------------eE
Q 024676           27 ITPDGFFLVSA-SKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANAL--FSASGSADF-----------------TA   85 (264)
Q Consensus        27 ~~~~g~~l~t~-s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~--~l~s~s~D~-----------------~v   85 (264)
                      .+|||++|... ..+..|.++|+.+++..+.+. .+....+.++|+++++  +++..+.+.                 .+
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            44699998554 577789999999998877765 4667899999999988  444444332                 23


Q ss_pred             EEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCC-----------------------------------------
Q 024676           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-----------------------------------------  124 (264)
Q Consensus        86 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----------------------------------------  124 (264)
                      ..+|..+.+....+........+.++|+++++++.+.+.                                         
T Consensus       159 ~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         159 TAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             EEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            457888887777776666677889999999998876542                                         


Q ss_pred             cEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce-----------eE-EecCCCCEEE
Q 024676          125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-----------VQ-TLETKSPVTS  192 (264)
Q Consensus       125 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-----------~~-~~~~~~~v~~  192 (264)
                      .+.+++....+ ....+.. ......+..+|++.++++++..+++|.+||+++.+.           +. ..+..-...-
T Consensus       239 v~vvd~~~~~~-v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh  316 (441)
T d1qnia2         239 VPVVDGRGESE-FTRYIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH  316 (441)
T ss_dssp             CCEEECSSSCS-SEEEECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEE
T ss_pred             cEEEEcccCCc-eEEEEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccc
Confidence            22222222111 1122222 233466788999999999999999999999876332           11 1111112445


Q ss_pred             EEEcCCCcEEEEe-CCCcEEEEECCC----------ceeeeEEecCCCC------ceeeEcCCCCCEEEEe---cCCCe
Q 024676          193 AEVSRDGRYITTA-DGSSVKFWDANH----------FGLVKGYNMPCNT------ESASLEPKLGNIFIAG---GEDMW  251 (264)
Q Consensus       193 ~~~s~~~~~l~~~-~~~~i~iwd~~~----------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g---s~d~~  251 (264)
                      .+|.++|..+++. .|..|..|++..          ...+.....+.++      ...++.| +|++|+++   |.|+.
T Consensus       317 ~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p-dGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         317 TTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA-DGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CCCEEEEEESCCGGGS
T ss_pred             ceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC-CCcEEEecCccccccC
Confidence            6899999777664 478999999742          1234444433222      2233445 69999999   66653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.28  E-value=4.2e-10  Score=95.22  Aligned_cols=106  Identities=13%  Similarity=-0.065  Sum_probs=82.2

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeC---------CCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCC
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASK---------DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~---------d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~   83 (264)
                      ..|...|..+.|+|   ||++|+.++.         ++.+.+||+.+++. ..+..|.+.+..+.|+|||+++|.. .|+
T Consensus        58 ~~~~~~i~~~~~Sp---Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~  132 (470)
T d2bgra1          58 DEFGHSINDYSISP---DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNN  132 (470)
T ss_dssp             TTSSSCCCEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETT
T ss_pred             hhccCccceeEECC---CCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecc
Confidence            34567899999996   9999998854         45678999998874 5678888999999999999999885 577


Q ss_pred             eEEEEeCCCCcEEEEee-------------------cCCeEEEEEECCCCCEEEEeeCC
Q 024676           84 TAKLWDALTGDEKHSFE-------------------HKHIVRACAFSEDTHLLLTGGFE  123 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~l~s~~~d  123 (264)
                      .+.+|+..++...+...                   .......+.|+|+++.|+....|
T Consensus       133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            89999998886554321                   11123457899999999987654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.14  E-value=3.5e-10  Score=95.66  Aligned_cols=148  Identities=9%  Similarity=0.027  Sum_probs=106.3

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee-----eCCcCCEEEEEECCCCcEEEEec---------CCCeEE
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-----EGHKGAVWSCCLDANALFSASGS---------ADFTAK   86 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~-----~~H~~~V~~v~~~~~~~~l~s~s---------~D~~v~   86 (264)
                      .+.|.|   |++++..  .|+.+.+||..+++....+     ..|...|.++.|+||+++++.++         .++.+.
T Consensus        21 ~~~W~~---d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          21 SLRWIS---DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCEECS---SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CCEeCC---CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            467774   8887754  5788999999999865544     45668899999999999988774         356788


Q ss_pred             EEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc-----------------CCCCeE
Q 024676           87 LWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-----------------SSGSIR  149 (264)
Q Consensus        87 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-----------------~~~~i~  149 (264)
                      +||+.+++......+...+....|+|+++.++.. .++.+.+|+..+++........                 ..+...
T Consensus        96 l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            9999998765555577789999999999999885 5678999998766432111111                 112234


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEE
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWD  174 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd  174 (264)
                      .+.|+|++..++....++..++.|+
T Consensus       175 ~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             ccEECCCCCccceeEecCCcCceEE
Confidence            5679998887766655545455443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=5.1e-07  Score=70.65  Aligned_cols=236  Identities=11%  Similarity=0.147  Sum_probs=153.6

Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC------CcCCEEEEEECCC-CcEEE-EecCCCeEEEE
Q 024676           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG------HKGAVWSCCLDAN-ALFSA-SGSADFTAKLW   88 (264)
Q Consensus        17 ~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~------H~~~V~~v~~~~~-~~~l~-s~s~D~~v~iw   88 (264)
                      ..-..|+.+|   +|+.+++-...+.|++||.+ |+++..+..      ....-..+++..+ +..++ ..+.++.|..+
T Consensus        23 ~~P~gvavd~---dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          23 TEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             SCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCccEEEEcC---CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            3456788875   88888887777889999865 777666632      1112244555443 44443 45566778877


Q ss_pred             eCCCCcEEEEee--cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEe--ccCCCCeEEEEEecCCCeEEEEe
Q 024676           89 DALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        89 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      +. .+.....+.  .......+++.+++.++++....+.+.+++.+. +.. ...  ..+......++..++ +.++++.
T Consensus        99 ~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~-~~~g~~~~~~~~~~i~~d~~-g~i~v~d  174 (279)
T d1q7fa_          99 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVL-HKFGCSKHLEFPNGVVVNDK-QEIFISD  174 (279)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-EEEECTTTCSSEEEEEECSS-SEEEEEE
T ss_pred             cc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-cee-ecccccccccccceeeeccc-eeEEeee
Confidence            75 455555553  234567888999999888877777788887543 221 222  223345566666554 4567677


Q ss_pred             eCCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeC--CCcEEEEECCCceeeeEEecCC---CCceeeEc
Q 024676          165 TDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNMPC---NTESASLE  236 (264)
Q Consensus       165 ~~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~  236 (264)
                      ...+.|++||.. ++.+.++..   ......+++.|+|+++++..  +..|.+++. +++.+..+....   .+..+++.
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe
Confidence            777899999975 566666642   23477899999998877643  346899884 566666664432   34455666


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCcceeeC
Q 024676          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIG  264 (264)
Q Consensus       237 ~~~~~~~~~gs~d~~v~vwd~~~g~~i~  264 (264)
                      ++ |.++++ +.+..|++|+..+..++|
T Consensus       253 ~d-G~l~V~-~~n~~v~~fr~~~~~~~~  278 (279)
T d1q7fa_         253 DD-GSVVLA-SKDYRLYIYRYVQLAPVG  278 (279)
T ss_dssp             TT-TEEEEE-ETTTEEEEEECSCCCCTT
T ss_pred             CC-CcEEEE-eCCCeEEEEEeeeecCCC
Confidence            64 766655 568999999988877664

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.08  E-value=6.9e-08  Score=78.90  Aligned_cols=240  Identities=8%  Similarity=0.074  Sum_probs=137.0

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCC-CceEEee-eCCcCCEEEEEECCCCcE--EEEec-CCCeEEEEe
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTF-EGHKGAVWSCCLDANALF--SASGS-ADFTAKLWD   89 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~-~~~~~~~-~~H~~~V~~v~~~~~~~~--l~s~s-~D~~v~iwd   89 (264)
                      +..++.-|+|+|   ++++|.++..+ .+..|.+.. +...... .........++++++++.  ++++. ..++|..+.
T Consensus        38 ~~~~~s~la~s~---d~~~ly~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~  113 (365)
T d1jofa_          38 QDEPISWMTFDH---ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECT---TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCCEEEEcC---CCCEEEEEeCC-cEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeE
Confidence            444556688885   89888877654 455665432 2222111 111122334667888873  44432 234554443


Q ss_pred             CCC-C------------cE---EEEe--ecCCeEEEEEECCCCCEEEEeeC-CCcEEEeeCCCCCCCCe----EeccCCC
Q 024676           90 ALT-G------------DE---KHSF--EHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPR----EVGNSSG  146 (264)
Q Consensus        90 ~~~-~------------~~---~~~~--~~~~~v~~~~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~----~~~~~~~  146 (264)
                      +.. +            ..   ....  +....+..+.++|++++++++.. ...|.+|+.........    .......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            321 1            10   0111  11224678999999999888764 45788887653322111    1112234


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCcee--E---EecC---------------CCCEEEEEEcCCCcEEEEeC
Q 024676          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV--Q---TLET---------------KSPVTSAEVSRDGRYITTAD  206 (264)
Q Consensus       147 ~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~--~---~~~~---------------~~~v~~~~~s~~~~~l~~~~  206 (264)
                      ....+++.|++..+.++.-.+++|.+||+.+++..  .   ....               ......+.++|||+++..+.
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            57788999988888788878899999998765422  1   1110               01245788999999875542


Q ss_pred             ---C----CcEEEEECCCceeeeE----Ee---cCCCCceeeEcCCCCCE-EEEecCCCeEEEEEcC
Q 024676          207 ---G----SSVKFWDANHFGLVKG----YN---MPCNTESASLEPKLGNI-FIAGGEDMWVHVFDFH  258 (264)
Q Consensus       207 ---~----~~i~iwd~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~-~~~gs~d~~v~vwd~~  258 (264)
                         +    ..|..|++.....+..    ..   ....+..+.+.|..|++ +++...++.|.+|+++
T Consensus       274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence               1    1366677654322211    11   12345567777755775 4566788999999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=5e-07  Score=69.74  Aligned_cols=201  Identities=12%  Similarity=0.122  Sum_probs=120.8

Q ss_pred             eccCCCeeeeEeccCCCCCeEEEEEeCCCC---cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecC-CCe--EE
Q 024676           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSS---PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DFT--AK   86 (264)
Q Consensus        13 ~~h~~~v~~~~~~~~~~~g~~l~t~s~d~~---v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~-D~~--v~   86 (264)
                      ..+...+..-+|+|   ||++||-.+....   +.+.+...+.. ..+..+.+......|+|+++.++..+. ++.  +.
T Consensus        35 ~~~~~~~~sP~wSP---DGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          35 HRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             EEESSCEEEEEECT---TSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             ecCCCceeeeEECC---CCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            34566677788885   9999986654442   34445555543 344557778888999999988765433 322  22


Q ss_pred             EEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEee-CCCc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEE
Q 024676           87 LWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (264)
Q Consensus        87 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  163 (264)
                      .+.....................++++++.++..+ .++.  +...++....  ...............|+|++..++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~  188 (269)
T d2hqsa1         111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMV  188 (269)
T ss_dssp             EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             ecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc--ceeeecccccccccccccccceeEEE
Confidence            33333333333333444445556777766555443 4454  4444554432  33333445566677899988888877


Q ss_pred             eeCCCeEEEE--ECCCCceeEEecCCCCEEEEEEcCCCcEEEEeC--C--CcEEEEECCCcee
Q 024676          164 CTDSGGVRLW--DARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--G--SSVKFWDANHFGL  220 (264)
Q Consensus       164 ~~~d~~v~iw--d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~--~~i~iwd~~~~~~  220 (264)
                      ....+...+|  |..++.. .............|||||+.|+...  +  ..|.++++.....
T Consensus       189 ~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             eecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            7766655555  5554443 3334444566788999998775422  2  3688889876654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=1.8e-07  Score=72.57  Aligned_cols=235  Identities=10%  Similarity=0.009  Sum_probs=143.3

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEE-eCCCCcEEEeCCCCc-eEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSA-SKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~-s~d~~v~i~~~~~~~-~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~   92 (264)
                      |...-.+|++.+   +|+..++. +..+.+..++..+.. ....+.+. .....+++++++...++....+.+++++-.+
T Consensus        12 ~~~~P~~vavd~---dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          12 FRLSPSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             SCCCEEEEEECT---TCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCS
T ss_pred             CcCCCCEEEEcC---CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeecc
Confidence            344456888885   78755554 445566666554332 22233332 2346788999999888888888888887666


Q ss_pred             CcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                      ...............++++++++++++-.....+..++............ .......+++.+++. ++++...++.|..
T Consensus        88 ~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~-~~v~~~~~~~i~~  165 (260)
T d1rwia_          88 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGN-VYVTDTDNNRVVK  165 (260)
T ss_dssp             CCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEECTTCC-EEEEEGGGTEEEE
T ss_pred             ceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeec-ccCCcceeeecCCCC-Eeeeccccccccc
Confidence            55444443345678899999998877665566676666543322111111 122345677766554 5666666688999


Q ss_pred             EECCCCceeEE-ecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEECCCceeeeEEecC--CCCceeeEcCCCCCEEEEecC
Q 024676          173 WDARSGKIVQT-LETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGE  248 (264)
Q Consensus       173 wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~  248 (264)
                      +|.++...... .........+++.++|.++++.. .+.|..++..... ...+...  ..+..+++.+ +|.++++-..
T Consensus       166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~-~g~l~vad~~  243 (260)
T d1rwia_         166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDS-DRTVYVADRG  243 (260)
T ss_dssp             ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECT-TCCEEEEEGG
T ss_pred             cccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeC-CCCEEEEECC
Confidence            99876543322 22334578899999998877765 4677777765432 2222221  2345566776 4788888777


Q ss_pred             CCeEEEEEc
Q 024676          249 DMWVHVFDF  257 (264)
Q Consensus       249 d~~v~vwd~  257 (264)
                      +..|+-++.
T Consensus       244 ~~rI~~i~~  252 (260)
T d1rwia_         244 NDRVVKLTS  252 (260)
T ss_dssp             GTEEEEECC
T ss_pred             CCEEEEEeC
Confidence            787776653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.2e-06  Score=67.53  Aligned_cols=217  Identities=16%  Similarity=0.138  Sum_probs=126.6

Q ss_pred             cEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC-C--eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEE
Q 024676           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-F--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT  119 (264)
Q Consensus        43 v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D-~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  119 (264)
                      +.|.|.. |...+.+..+...+.+-+|+|||+.||-.+.. +  .+.+.+..++.......+........|+|+++.++.
T Consensus        21 l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          21 LRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            5555655 33333443455778889999999998754332 2  455567777776666667777888899999998887


Q ss_pred             eeC-CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe--EEEEECCCCceeEEecCCCCEEEEEEc
Q 024676          120 GGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEVS  196 (264)
Q Consensus       120 ~~~-d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~s  196 (264)
                      ... ++...++.......................+.+.+..++.+...++.  |.+.++.++................++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVS  179 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEEC
T ss_pred             eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccc
Confidence            654 33333333222222222222233344445566666666666655554  555566666544434444556778999


Q ss_pred             CCCcEEEEe--CCCc--EEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe---cCCCeEEEEEcCccee
Q 024676          197 RDGRYITTA--DGSS--VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG---GEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       197 ~~~~~l~~~--~~~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---s~d~~v~vwd~~~g~~  262 (264)
                      |+++.++..  .++.  +.+.+...... +............++|+ |+.|+-.   +....+++++++.++.
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPD-G~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPN-GTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTT-SSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             cccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCC-CCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            999887643  2343  44555554432 22222223345567775 7766532   3345788899876643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=2.1e-07  Score=73.76  Aligned_cols=192  Identities=11%  Similarity=0.097  Sum_probs=128.2

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCC--cEE
Q 024676           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG--DEK   96 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~   96 (264)
                      +..+++.|   ||+++++...++.|..++.. ++. ..+....+.+.+++|++++.++++...++.+..|+....  ...
T Consensus        30 ~e~iAv~p---dG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          30 LENLASAP---DGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             EEEEEECT---TSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             cCCEEECC---CCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            55788885   99999999999988888865 432 234445577899999999999888888888887775443  222


Q ss_pred             E--EeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec---------cCCCCeEEEEEecCCCeEEEEee
Q 024676           97 H--SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---------NSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        97 ~--~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      .  ........+.+.+.++++++++-+.++.+..++...+........         ........+.+.  +..++.+.+
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence            2  223445688999999999888878888888888765432111110         011223444443  456777777


Q ss_pred             CCCeEEEEECCCCcee---EEecCCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCC
Q 024676          166 DSGGVRLWDARSGKIV---QTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~  217 (264)
                      ..+.|..++.......   ...........+++.++|+++++. .++.|..++...
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            7788988887654322   122222345678999999877664 467888887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.97  E-value=1e-06  Score=69.70  Aligned_cols=193  Identities=11%  Similarity=0.026  Sum_probs=129.5

Q ss_pred             CEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (264)
                      .+..+++++||.++++...+++|..|+.. +...........+..++++++++++++...++.+..++............
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            47789999999999999999999888854 44444556677899999999999888888888888887654333222221


Q ss_pred             --cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-----------CCCEEEEEEcCCCcEEEEeCCCc
Q 024676          143 --NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-----------KSPVTSAEVSRDGRYITTADGSS  209 (264)
Q Consensus       143 --~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~~~~  209 (264)
                        ........+++.++ +.++++.+.++.+..+|..++........           ....+.+.+..+..+++....+.
T Consensus       108 ~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~  186 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  186 (302)
T ss_dssp             ECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             ccCCccccceeEEccC-CCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCe
Confidence              22344666776654 56666666778898899887754322211           12356677765544444455678


Q ss_pred             EEEEECCCceee---eEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          210 VKFWDANHFGLV---KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       210 i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      |..++.......   ..+.....+..+++.++ |.++++...++.|..++..
T Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d-G~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         187 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE-GNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT-CCEEEECBTTCCEEEECTT
T ss_pred             EEeccccccccccccccccCCCCCcceEECCC-CCEEEEEcCCCcEEEECCC
Confidence            887777543222   22222344556777774 7888888888889998764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.96  E-value=2.3e-06  Score=68.13  Aligned_cols=233  Identities=13%  Similarity=0.150  Sum_probs=142.3

Q ss_pred             eeeEeccCCCCCeEEEEEeC-------CCCcEEEeCCCCceEEeeeCC----cCCEEEEEECCCCcEEEEecCCCeEEEE
Q 024676           20 VDLFYSPITPDGFFLVSASK-------DSSPMLRNGETGDWIGTFEGH----KGAVWSCCLDANALFSASGSADFTAKLW   88 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s~-------d~~v~i~~~~~~~~~~~~~~H----~~~V~~v~~~~~~~~l~s~s~D~~v~iw   88 (264)
                      -.++|.|   +|++.++...       ++.|..|+..+++........    .+.-..++|.+++..++.+...+.+...
T Consensus        21 EGpa~d~---dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          21 EGPVFDK---NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             EEEEECT---TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             eEeEEeC---CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            3577885   8887665433       356778898887654322211    1234679999999877666666678888


Q ss_pred             eCCCCcEEEEee-cC----CeEEEEEECCCCCEEEEeeC---------------CCcEEEeeCCCCCCCCeEeccCCCCe
Q 024676           89 DALTGDEKHSFE-HK----HIVRACAFSEDTHLLLTGGF---------------EKILRIFDLNRPDAPPREVGNSSGSI  148 (264)
Q Consensus        89 d~~~~~~~~~~~-~~----~~v~~~~~~~~~~~l~s~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~~i  148 (264)
                      +...+....... ..    ...+.+.+++++.+.++-..               .+.+..++.+ ++  .......-...
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~--~~~~~~~~~~p  174 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFP  174 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cc--eeEeeCCccee
Confidence            876543221111 11    12567899999988776422               1223333322 11  11111111223


Q ss_pred             EEEEEecCCC----eEEEEeeCCCeEEEEECCCCceeE------EecC--CCCEEEEEEcCCCcEEEEe-CCCcEEEEEC
Q 024676          149 RTVAWLHSDQ----TILSSCTDSGGVRLWDARSGKIVQ------TLET--KSPVTSAEVSRDGRYITTA-DGSSVKFWDA  215 (264)
Q Consensus       149 ~~~~~~~~~~----~~~~~~~~d~~v~iwd~~~~~~~~------~~~~--~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~  215 (264)
                      +.++|.+++.    .++++.+..+.|..||+.....+.      .+..  ......+++.++|++.++. ..+.|..||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            5677877653    456666666889888876432221      2221  1235678999999876654 5678999998


Q ss_pred             CCceeeeEEecCC-CCceeeEcCCCCCEEEEecCCCeEEEEEcC
Q 024676          216 NHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       216 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      ..++.+..+..+. .+..++|.++...++++.+.++.|+..++.
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8877666677654 455678877544588999999988888854

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.95  E-value=4.3e-06  Score=66.62  Aligned_cols=234  Identities=9%  Similarity=0.025  Sum_probs=145.1

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCC----CeEEEEeCCCC
Q 024676           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALTG   93 (264)
Q Consensus        18 ~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D----~~v~iwd~~~~   93 (264)
                      .+-.++|.+   +|++.++-...+.|..++..+++....+.........+++++|+.++++...+    +.+...+....
T Consensus        41 ~lEG~~~D~---~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDR---QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECT---TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcEeCEECC---CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            345788885   88877777788888888888776665555556677899999999887765432    23444444444


Q ss_pred             cEEEEeec---CCeEEEEEECCCCCEEEEeeCC------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEe
Q 024676           94 DEKHSFEH---KHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus        94 ~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  164 (264)
                      ........   ....+.+.+.+++++.++....      +.+..++.+...  .......-...+.++|++++..+.++-
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce--eEEEeeccceeeeeeeccccceEEEec
Confidence            43333332   2347789999999877654321      224444433221  122211223456789998888777777


Q ss_pred             eCCCeEEEEECCCC-ceeE--------EecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEecCCC-----
Q 024676          165 TDSGGVRLWDARSG-KIVQ--------TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-----  229 (264)
Q Consensus       165 ~~d~~v~iwd~~~~-~~~~--------~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~-----  229 (264)
                      +..+.|..||+... ....        ..........+++.++|++.++ ..++.|..+|. .++.+..+..+..     
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM  274 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcC
Confidence            77789999998642 1111        1111223567999999987655 45689999995 6788888877542     


Q ss_pred             --CceeeEcCCCCCEEEEec-----CCCeEEEEEc
Q 024676          230 --TESASLEPKLGNIFIAGG-----EDMWVHVFDF  257 (264)
Q Consensus       230 --~~~~~~~~~~~~~~~~gs-----~d~~v~vwd~  257 (264)
                        ..+..+.+....++++.+     ..+.++..+.
T Consensus       275 ~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         275 LRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             CBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             ceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence              335556554344555532     2344555543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.84  E-value=2.7e-06  Score=66.37  Aligned_cols=183  Identities=13%  Similarity=0.242  Sum_probs=121.1

Q ss_pred             CeEEEEE-eCCCCcEEEeCCCCceEEeee-CCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEee---cCCeE
Q 024676           31 GFFLVSA-SKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIV  105 (264)
Q Consensus        31 g~~l~t~-s~d~~v~i~~~~~~~~~~~~~-~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~v  105 (264)
                      +.++++. +.++.+.+++. .++....+. ........+++.+++.++++....+.+.+++.. +..+..+.   +....
T Consensus        82 ~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP  159 (279)
T ss_dssp             TEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred             cccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccccccc
Confidence            3444433 33344555554 466666664 245566789999999888887777888888854 44455543   34457


Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEecc--CCCCeEEEEEecCCCeEEEEe-eCCCeEEEEECCCCceeE
Q 024676          106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILSSC-TDSGGVRLWDARSGKIVQ  182 (264)
Q Consensus       106 ~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~  182 (264)
                      ..++++++++++++....+.|++||... +. ...++.  .......++..+++. ++++- ..++.|.+|+. +|+.+.
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~-~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~  235 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLIS  235 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEE
T ss_pred             ceeeeccceeEEeeeccccceeeeecCC-ce-eeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECC-CCCEEE
Confidence            7888999998888888889999999753 22 222221  223456778777665 55443 34457999984 577666


Q ss_pred             EecC---CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCce
Q 024676          183 TLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFG  219 (264)
Q Consensus       183 ~~~~---~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~  219 (264)
                      .+..   ......+++.|+|+++++..+..|++|......
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             EEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence            5532   234788999999988877777889999876553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=9.5e-06  Score=62.47  Aligned_cols=189  Identities=11%  Similarity=0.003  Sum_probs=120.1

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEE-
Q 024676           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-   98 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-   98 (264)
                      ..|+++|   +|+..++....+.+++++..++..+..+.+. .....+++.+++.+.++-..+..+..++......... 
T Consensus        60 ~gvav~~---~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~-~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~  135 (260)
T d1rwia_          60 QGLAVDG---AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  135 (260)
T ss_dssp             CCEEECT---TCCEEEEETTTEEEEECTTCSCCEECCCCSC-CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC
T ss_pred             eEEEEcC---CCCEEEeeeeeceeeeeeeccceeeeeeeee-eecccccccccceeEeeccccccccccccccceeeeee
Confidence            4677774   7887777666666666665555554444332 4567899999998877777777777777655432221 


Q ss_pred             eecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 024676           99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (264)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~  178 (264)
                      .........++++++++++++...++.|..++.+.... .............+++.++ +.++++....+.|..++..+.
T Consensus       136 ~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         136 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTTCS
T ss_pred             ecccCCcceeeecCCCCEeeecccccccccccccccee-eeeeccccCCCccceeeee-eeeeeeecCCCEEEEEeCCCC
Confidence            11223456788999999888877888899998764321 1111122345567777665 457777777788888887655


Q ss_pred             ceeEE-ecCCCCEEEEEEcCCCcEEEEeC-CCcEEEEE
Q 024676          179 KIVQT-LETKSPVTSAEVSRDGRYITTAD-GSSVKFWD  214 (264)
Q Consensus       179 ~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iwd  214 (264)
                      ..... ...-.....++++++|.++++.. +++|+..+
T Consensus       214 ~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         214 TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            43221 12224578899999998776643 45555444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.58  E-value=8.9e-05  Score=59.86  Aligned_cols=166  Identities=8%  Similarity=0.041  Sum_probs=100.4

Q ss_pred             CEEEEEECCCCcEEEEec-CCCeEEEEeCCCC-cEEE--Ee---ecCCeEEEEEECCCCCEEEEee-CCCcEEEeeCCCC
Q 024676           63 AVWSCCLDANALFSASGS-ADFTAKLWDALTG-DEKH--SF---EHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRP  134 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s-~D~~v~iwd~~~~-~~~~--~~---~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~d~~~~  134 (264)
                      -++++.|+||++++++++ ....|.+|+.... ....  ..   ......+.+.++|++++++... .+++|.+|+++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            478999999999876553 3457888875443 2211  11   2345678899999999887665 5789999998654


Q ss_pred             CCCCeEe-c-----------------cCCCCeEEEEEecCCCeEEEEeeCCC-----eEEEEECCCCceeE------Eec
Q 024676          135 DAPPREV-G-----------------NSSGSIRTVAWLHSDQTILSSCTDSG-----GVRLWDARSGKIVQ------TLE  185 (264)
Q Consensus       135 ~~~~~~~-~-----------------~~~~~i~~~~~~~~~~~~~~~~~~d~-----~v~iwd~~~~~~~~------~~~  185 (264)
                      ....... .                 ........+.++|++..++++...+.     .|..|++.....+.      ...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            4321110 0                 00112345677888887777654333     37777765432211      111


Q ss_pred             -CCCCEEEEEEcC-CCcEEEEe--CCCcEEEEECCCc--eeeeEEecCC
Q 024676          186 -TKSPVTSAEVSR-DGRYITTA--DGSSVKFWDANHF--GLVKGYNMPC  228 (264)
Q Consensus       186 -~~~~v~~~~~s~-~~~~l~~~--~~~~i~iwd~~~~--~~~~~~~~~~  228 (264)
                       .......++++| +|++|..+  .++.|.+|++...  ..+....++.
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~  354 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPE  354 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECCS
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEECCC
Confidence             223456788998 78877554  3579999976543  3444444443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.50  E-value=2.5e-05  Score=61.90  Aligned_cols=192  Identities=11%  Similarity=0.112  Sum_probs=113.0

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEee----eCCc-CCEEEEEECCCCcEEEEecCC------------
Q 024676           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF----EGHK-GAVWSCCLDANALFSASGSAD------------   82 (264)
Q Consensus        20 ~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~----~~H~-~~V~~v~~~~~~~~l~s~s~D------------   82 (264)
                      ..|+|.|   +|+.|+++...+.+...+...+... .+    .+.. ...+.+++.++|.+.+|-...            
T Consensus        74 ~Gl~~~~---dg~~l~vad~~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          74 AGCQCDR---DANQLFVADMRLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEECS---SSSEEEEEETTTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             eeEEEeC---CCCEEEEEECCCeEEEEeCCCcEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence            4678875   7877777777777777787654321 12    1211 124678899999877764221            


Q ss_pred             -CeEEEEeCC-CCcEEEEeecCCeEEEEEECCCCC-----EEEEeeCCCcEEEeeCCCCCCCC-eE-e----ccCCCCeE
Q 024676           83 -FTAKLWDAL-TGDEKHSFEHKHIVRACAFSEDTH-----LLLTGGFEKILRIFDLNRPDAPP-RE-V----GNSSGSIR  149 (264)
Q Consensus        83 -~~v~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~-----~l~s~~~d~~i~~~d~~~~~~~~-~~-~----~~~~~~i~  149 (264)
                       ..-++|.+. .++.......-...+.++|+|++.     +.++-+..+.|..|++....... .. .    ....+..-
T Consensus       150 ~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         150 EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             cCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence             112344332 233333333333457788988764     44445667888888875332111 11 1    11122234


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEEECCCCceeEEecC-CCCEEEEEEcCCCc-EEEE-eCCCcEEEEECC
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR-YITT-ADGSSVKFWDAN  216 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~s~~~~-~l~~-~~~~~i~iwd~~  216 (264)
                      .+++-+++ .+.++....+.|.+||.++++.+..+.. .....+++|.|+++ ++++ +.++.|...++.
T Consensus       230 GiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         230 GMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            56665544 5555656668999999998887665554 34688999999985 4344 456777777764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.46  E-value=2.8e-05  Score=59.69  Aligned_cols=224  Identities=13%  Similarity=0.077  Sum_probs=114.4

Q ss_pred             CC--CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEe----cCCC--eEEEEeCCCCcEEEEee
Q 024676           29 PD--GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG----SADF--TAKLWDALTGDEKHSFE  100 (264)
Q Consensus        29 ~~--g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~----s~D~--~v~iwd~~~~~~~~~~~  100 (264)
                      ||  |+.+|-.+ ++.+.+.++.+++.. .+..+.+.+...+|+|||+.+|-.    +.+.  .+.+.+..+++......
T Consensus         8 Pdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~   85 (281)
T d1k32a2           8 PDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY   85 (281)
T ss_dssp             EEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred             CCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee
Confidence            57  88776554 455777798887754 565566778889999999988743    2222  35566776666543321


Q ss_pred             cC-------CeEEEEEECCCCCEEEEeeCC------CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC
Q 024676          101 HK-------HIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (264)
Q Consensus       101 ~~-------~~v~~~~~~~~~~~l~s~~~d------~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d  167 (264)
                      ..       .......|+|+++.++.....      ..+...+......   .. ...+... -.+.+++..++......
T Consensus        86 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~-~~~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          86 FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF---VP-LNLGPAT-HILFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE---EE-CCSCSCS-EEEEETTEEEEEESCSC
T ss_pred             cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee---EE-ecCCccc-eeeecCCCeEEEeeccc
Confidence            11       224567899999988864322      1233344332211   11 1111111 12334444333332211


Q ss_pred             C-----------eEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCC--CcEEEEECCCceeeeEEecCCCCceee
Q 024676          168 G-----------GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG--SSVKFWDANHFGLVKGYNMPCNTESAS  234 (264)
Q Consensus       168 ~-----------~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~  234 (264)
                      .           ..........................++++..+.....+  ..|.++|+...+.- .+..........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~~~~~~  239 (281)
T d1k32a2         161 LPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTDYYPRH  239 (281)
T ss_dssp             CTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE-ECCCCCSSCEEE
T ss_pred             cceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceE-EeecCCCccccc
Confidence            1           111112122222222222333444556666444444332  35777788765432 222222222335


Q ss_pred             EcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       235 ~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      ++++ |+.|+. ..++.++++|+++|+.
T Consensus       240 ~SpD-G~~I~f-~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         240 LNTD-GRRILF-SKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             EEES-SSCEEE-EETTEEEEECTTTCCE
T ss_pred             CcCC-CCEEEE-EeCCEEEEEECCCCCE
Confidence            6665 554443 3357799999998875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.35  E-value=0.00032  Score=55.33  Aligned_cols=199  Identities=14%  Similarity=0.082  Sum_probs=117.2

Q ss_pred             cCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEe-ecCCeEEEEEECCCCCEEEEeeCC--Cc--EEEeeCCCCC
Q 024676           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFE--KI--LRIFDLNRPD  135 (264)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d--~~--i~~~d~~~~~  135 (264)
                      ......++|++++.+.++-...+.|..|+..++.....+ ........++++++++++++...+  ..  +...+.....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            334567899999987778788899988988776644433 344567899999999887765432  23  3333433322


Q ss_pred             CCCeEecc--CCCCeEEEEEecCCCeEEEEeeC------CCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEE-EE-e
Q 024676          136 APPREVGN--SSGSIRTVAWLHSDQTILSSCTD------SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TT-A  205 (264)
Q Consensus       136 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~-~  205 (264)
                      . ......  .....+.+.+.+++. +.++...      .+.+..++............-...+.++++|+++.| ++ .
T Consensus       119 ~-~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         119 L-QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             C-EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             e-eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence            1 111211  122345566666554 4444322      123555565544332222222356789999999744 44 3


Q ss_pred             CCCcEEEEECCCc-eeee----E--EecC--CCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          206 DGSSVKFWDANHF-GLVK----G--YNMP--CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       206 ~~~~i~iwd~~~~-~~~~----~--~~~~--~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ..+.|..||+... ....    .  ....  ..+.-+++.. .|.++++...++.|.+||. .|+.+
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l  261 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPI  261 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEE
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEE
Confidence            3578999987532 1111    1  1111  1123355665 4888888888999999996 57754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.27  E-value=0.00047  Score=53.73  Aligned_cols=218  Identities=10%  Similarity=0.017  Sum_probs=140.1

Q ss_pred             eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEEEEecCCCeEEEEeCCCCcEEEEeec
Q 024676           22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH  101 (264)
Q Consensus        22 ~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  101 (264)
                      ..|++  .++++..+=-..+.|..|+..+++.. .+. ....+.++++.+++.++++. .+ -+.++|..+++.......
T Consensus        23 p~wd~--~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          23 PTFDP--ASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEET--TTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred             CeEEC--CCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeee
Confidence            45665  35666556556677888898887643 232 23467889998899877654 44 488899988875443321


Q ss_pred             -----CCeEEEEEECCCCCEEEEeeCC----CcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 024676          102 -----KHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (264)
Q Consensus       102 -----~~~v~~~~~~~~~~~l~s~~~d----~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~i  172 (264)
                           ...++.+.+.|++++.++...+    +.-.+|.+..++.  ......-...+.++|++++..++.+.+..+.|..
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~--~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE--EEEeeccCCcceeeecCCCceEEEeecccceeeE
Confidence                 2247889999999987765322    2344555544432  1111122345678888888888888777789999


Q ss_pred             EECCCC------ceeE--Eec-CCCCEEEEEEcCCCcEEEEe-CCCcEEEEECCCceeeeEEecCC-CCceeeEc-CCCC
Q 024676          173 WDARSG------KIVQ--TLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-NTESASLE-PKLG  240 (264)
Q Consensus       173 wd~~~~------~~~~--~~~-~~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~  240 (264)
                      +++...      +...  ... .......+++.++|++.++. .++.|..||. .++.+..+..+. ++.+.+|. ++..
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence            887431      1111  111 23347789999999887665 4678999995 677888898875 45566775 4445


Q ss_pred             CEEEEecC
Q 024676          241 NIFIAGGE  248 (264)
Q Consensus       241 ~~~~~gs~  248 (264)
                      .+++|.+.
T Consensus       254 ~LyvTta~  261 (295)
T d2ghsa1         254 RLLVTSAR  261 (295)
T ss_dssp             EEEEEEBC
T ss_pred             EEEEEECC
Confidence            67776443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=0.00025  Score=59.11  Aligned_cols=198  Identities=12%  Similarity=-0.016  Sum_probs=117.7

Q ss_pred             eEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeC---CcCCEEEEEECCCCcEEEEe---------cCCCeEEEEe
Q 024676           22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASG---------SADFTAKLWD   89 (264)
Q Consensus        22 ~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~---H~~~V~~v~~~~~~~~l~s~---------s~D~~v~iwd   89 (264)
                      ..|.+   ++.++ .-..++.+.+|++.+++....+..   ..-.+....|+||+++++-.         +..+...++|
T Consensus        22 ~~W~~---~~~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          22 AKWIS---DTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CCBSS---SSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             CEEeC---CCcEE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            34553   55554 345678899999988865333333   22356677899999987654         3356788889


Q ss_pred             CCCCcEEEEee---cCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCC-----------------CCeE
Q 024676           90 ALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-----------------GSIR  149 (264)
Q Consensus        90 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-----------------~~i~  149 (264)
                      +.++.......   ....+....|+|+++.++-.. ++.+.+.+...+...........                 +.-.
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccc
Confidence            98876543322   122345578999999987654 56677777655433211111111                 1124


Q ss_pred             EEEEecCCCeEEEEeeCCCeEEEE---------------------------------ECCCCceeEEecC-------CCC
Q 024676          150 TVAWLHSDQTILSSCTDSGGVRLW---------------------------------DARSGKIVQTLET-------KSP  189 (264)
Q Consensus       150 ~~~~~~~~~~~~~~~~~d~~v~iw---------------------------------d~~~~~~~~~~~~-------~~~  189 (264)
                      .+-|+|++..++..-.++..|..+                                 |+.++........       ..-
T Consensus       177 a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y  256 (465)
T d1xfda1         177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (465)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             eEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccce
Confidence            667899888877665555554444                                 3333222111100       012


Q ss_pred             EEEEEEcCCCcEEEEeC--C---CcEEEEECCCceeeeEE
Q 024676          190 VTSAEVSRDGRYITTAD--G---SSVKFWDANHFGLVKGY  224 (264)
Q Consensus       190 v~~~~~s~~~~~l~~~~--~---~~i~iwd~~~~~~~~~~  224 (264)
                      +..+.|+|++++++...  +   ..+.++|..++++...+
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence            56788999998765432  2   25788999888765444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00039  Score=57.89  Aligned_cols=178  Identities=15%  Similarity=0.070  Sum_probs=100.0

Q ss_pred             eeeeEeccCCCCCeEEEEEe---------CCCCcEEEeCCCCceEEe--eeCCcCCEEEEEECCCCcEEEEecCCCeEEE
Q 024676           19 VVDLFYSPITPDGFFLVSAS---------KDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (264)
Q Consensus        19 v~~~~~~~~~~~g~~l~t~s---------~d~~v~i~~~~~~~~~~~--~~~H~~~V~~v~~~~~~~~l~s~s~D~~v~i   87 (264)
                      +....|+   |||++|+...         ..+...++|+.+++....  .......+....|+|||+.+|-.. ++.+.+
T Consensus        63 ~~~~~~S---pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~  138 (465)
T d1xfda1          63 AIRYEIS---PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYY  138 (465)
T ss_dssp             CSEEEEC---TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred             cceeEEC---CCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEE
Confidence            3344455   5999887764         345667789988875322  222334455678999999987654 567888


Q ss_pred             EeCCCCcEEEEeec--CC-----------------eEEEEEECCCCCEEEEeeCC-CcEE--------------------
Q 024676           88 WDALTGDEKHSFEH--KH-----------------IVRACAFSEDTHLLLTGGFE-KILR--------------------  127 (264)
Q Consensus        88 wd~~~~~~~~~~~~--~~-----------------~v~~~~~~~~~~~l~s~~~d-~~i~--------------------  127 (264)
                      .+..++...+....  ..                 .-..+.|+|+++.|+....| ..+.                    
T Consensus       139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence            88766654433221  11                 11467899999999976432 2232                    


Q ss_pred             -------------EeeCCCCCCCCeEec-----cCCCCeEEEEEecCCCeEEEEeeCC---CeEEEEECCCCceeEEecC
Q 024676          128 -------------IFDLNRPDAPPREVG-----NSSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTLET  186 (264)
Q Consensus       128 -------------~~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~~~~  186 (264)
                                   ++|+.++........     .....+..+.|.+++..++.....+   ..+.++|..++++...+..
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence                         333332221111100     0111256677877665444443332   2588899999986543321


Q ss_pred             --CCC----EEEEEEcCCCc
Q 024676          187 --KSP----VTSAEVSRDGR  200 (264)
Q Consensus       187 --~~~----v~~~~~s~~~~  200 (264)
                        ...    -....++|||+
T Consensus       299 ~~~~wv~~~~~~p~~~~dg~  318 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSKDGR  318 (465)
T ss_dssp             ECSSCCCCCCCCCEECTTSC
T ss_pred             cCCceEeccCCceeEccCCC
Confidence              111    12346788885

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.75  E-value=0.0019  Score=48.90  Aligned_cols=199  Identities=13%  Similarity=0.074  Sum_probs=96.9

Q ss_pred             eeccCCCeeeeEeccCCCCCeEEEEEeC-CC-----CcEEEeCCCCceEEee------eCCcCCEEEEEECCCCcEEEEe
Q 024676           12 CHGHSRPVVDLFYSPITPDGFFLVSASK-DS-----SPMLRNGETGDWIGTF------EGHKGAVWSCCLDANALFSASG   79 (264)
Q Consensus        12 ~~~h~~~v~~~~~~~~~~~g~~l~t~s~-d~-----~v~i~~~~~~~~~~~~------~~H~~~V~~v~~~~~~~~l~s~   79 (264)
                      +-.+.+.+...+|+|   ||++||-... ++     .+.+++..+++..+..      .+........+|+|+++.++..
T Consensus        36 Lt~~~~~~~~p~~SP---DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          36 IVSNLGVINNARFFP---DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EECSSSEEEEEEECT---TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EecCCCcccCEEECC---CCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            344556677788885   9998885532 22     2555677777643321      1123345678899999887654


Q ss_pred             cCC------CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCc-----------EEEeeCCCCCCCCeEec
Q 024676           80 SAD------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI-----------LRIFDLNRPDAPPREVG  142 (264)
Q Consensus        80 s~D------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-----------i~~~d~~~~~~~~~~~~  142 (264)
                      ...      ..+...+...+.....  .........+.+....++....+..           ..........  .....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  188 (281)
T d1k32a2         113 DAMQPFSSMTCLYRVENDGINFVPL--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA--FKKIV  188 (281)
T ss_dssp             CTTSSSTTCCEEEEEEGGGTEEEEC--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE--EEEEE
T ss_pred             EccCCCccceeeeeecCCCceeEEe--cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc--eeecc
Confidence            222      2334444443332211  1222222223333333332222111           0111110000  01111


Q ss_pred             cCCCCeEEEEEecCCCeEEEEeeC--CCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCcee
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL  220 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~~--d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~  220 (264)
                      ..........+.+  ..++.....  ...|.++|+++++... +..........++|||+.|+...++.|.++|+.+++.
T Consensus       189 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         189 DMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             CCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred             CCccccceeeeec--cccceecccccccceEEEeCCCCceEE-eecCCCcccccCcCCCCEEEEEeCCEEEEEECCCCCE
Confidence            1122223333333  223333222  2357777888776543 3222222234589999888877778899999987764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.69  E-value=0.0074  Score=51.29  Aligned_cols=151  Identities=14%  Similarity=0.057  Sum_probs=82.9

Q ss_pred             EEEEEeCCCCcEEEeCCCCceEEeeeC---CcC-CEEEEEECCCCcEEEEec-----CCCeEEEEeCCCCcEEEEeecCC
Q 024676           33 FLVSASKDSSPMLRNGETGDWIGTFEG---HKG-AVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEHKH  103 (264)
Q Consensus        33 ~l~t~s~d~~v~i~~~~~~~~~~~~~~---H~~-~V~~v~~~~~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~~  103 (264)
                      .|+.++.|+.+.--|.++|+.+-.+.-   +.+ .+.+--.-.++..++.++     .++.|+-+|..+|+.+..+....
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~  196 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATG  196 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccC
Confidence            466778888887789999986543321   111 111100111344443332     36889999999999887653210


Q ss_pred             --------------------------------------eE-EEEEECCCCCEEEEeeC----------------CCcEEE
Q 024676          104 --------------------------------------IV-RACAFSEDTHLLLTGGF----------------EKILRI  128 (264)
Q Consensus       104 --------------------------------------~v-~~~~~~~~~~~l~s~~~----------------d~~i~~  128 (264)
                                                            .+ ....+++...+++.+..                ...+..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvA  276 (571)
T d2ad6a1         197 SDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWG  276 (571)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEE
T ss_pred             CcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceee
Confidence                                                  11 12355666666654433                234556


Q ss_pred             eeCCCCCCCCeEeccCC--------CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCceeEE
Q 024676          129 FDLNRPDAPPREVGNSS--------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQT  183 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~  183 (264)
                      .|+++++........+.        ..........+++  ..++....+|.+.++|.++|+.+..
T Consensus       277 ld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         277 RDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            67777765544332211        1111112222232  2455666779999999999987643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.68  E-value=0.0065  Score=46.96  Aligned_cols=184  Identities=16%  Similarity=0.116  Sum_probs=111.9

Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeee--C--CcCCEEEEEECCCCcEEEEecCC----CeEEE
Q 024676           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--G--HKGAVWSCCLDANALFSASGSAD----FTAKL   87 (264)
Q Consensus        16 ~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~--~--H~~~V~~v~~~~~~~~l~s~s~D----~~v~i   87 (264)
                      ...+.++++.+   +|+++++ +.+ -+.++|..+++......  .  .....+.+.+.++|.+.++...+    +.-.+
T Consensus        58 ~~~~~~i~~~~---dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          58 PFMGSALAKIS---DSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             SSCEEEEEEEE---TTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CCCcEEEEEec---CCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeE
Confidence            34567787774   7877665 444 46788998887543222  1  12357888999999876654322    34456


Q ss_pred             EeCCCCcEEEEeecCCeEEEEEECCCCCEEE-EeeCCCcEEEeeCCCCCCC----CeEe---ccCCCCeEEEEEecCCCe
Q 024676           88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAP----PREV---GNSSGSIRTVAWLHSDQT  159 (264)
Q Consensus        88 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~i~~~d~~~~~~~----~~~~---~~~~~~i~~~~~~~~~~~  159 (264)
                      |....+........-...+.+.|+++++.++ +-+..+.|..|+++.....    ....   ....+....++.- .++.
T Consensus       133 ~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~Gn  211 (295)
T d2ghsa1         133 YHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGH  211 (295)
T ss_dssp             EEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSC
T ss_pred             eeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEc-CCCC
Confidence            6666665444444344567899999998665 4456788888887532111    1111   1223345556554 4455


Q ss_pred             EEEEeeCCCeEEEEECCCCceeEEecCC-CCEEEEEEc-CCCc--EEEEeC
Q 024676          160 ILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVS-RDGR--YITTAD  206 (264)
Q Consensus       160 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~s-~~~~--~l~~~~  206 (264)
                      +.++....+.|..||. .++.+..+... ..+++++|- ||.+  |++++.
T Consensus       212 lWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         212 IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            6656556688999995 57777777653 358888885 5553  344443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.67  E-value=0.0089  Score=48.33  Aligned_cols=195  Identities=11%  Similarity=0.041  Sum_probs=124.5

Q ss_pred             eeEeccCCCCCeEEEEEeC-CCCcEEEeCCCCceEEeeeC-CcCCEEEEEEC--CCCcEEEEecCCC-------------
Q 024676           21 DLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEG-HKGAVWSCCLD--ANALFSASGSADF-------------   83 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~-d~~v~i~~~~~~~~~~~~~~-H~~~V~~v~~~--~~~~~l~s~s~D~-------------   83 (264)
                      ++.|-.-+.||+||..... +..|-+-|+.+.+..+.+.- -...++.++..  ++..+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            5666656678999877764 55677789988887664432 33455666654  4556777665532             


Q ss_pred             -----eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC-----------------------------------
Q 024676           84 -----TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-----------------------------------  123 (264)
Q Consensus        84 -----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------------------------------  123 (264)
                           ++-..|..+.+.............+.++|+++++++.+.+                                   
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                 3566788888776666655556678999999999988754                                   


Q ss_pred             ---CcEEEeeCCCC-CCCCe-EeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce-----------e-EEecC
Q 024676          124 ---KILRIFDLNRP-DAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-----------V-QTLET  186 (264)
Q Consensus       124 ---~~i~~~d~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-----------~-~~~~~  186 (264)
                         +.+.+.|.++. ..... .+. .......+..+|++.++++++.-+.++.++|+++...           + .+.+.
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             EEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence               22345554321 11111 221 1223456678899999999999889999999975321           1 11122


Q ss_pred             CCCEEEEEEcCCCcEEEEe-CCCcEEEEECC
Q 024676          187 KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN  216 (264)
Q Consensus       187 ~~~v~~~~~s~~~~~l~~~-~~~~i~iwd~~  216 (264)
                      .-...--+|...|.-.++- -|..|.-|++.
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecc
Confidence            2223445788888555554 37899999984

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.015  Score=44.03  Aligned_cols=207  Identities=9%  Similarity=-0.044  Sum_probs=123.9

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCC
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTG   93 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~   93 (264)
                      +.+.+.+|+|++.  .++...+-..++.|+..+...+.....+..-...+..++++.-+..+ .+-...+.|.+.++...
T Consensus        34 ~~~~~~~ld~D~~--~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          34 PAKVIIGLAFDCV--DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEEEETT--TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCcEEEEEEEeC--CCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            4445678889862  33444444556667777776554333333333567889998655444 46666789999998766


Q ss_pred             cEEEEeec-CCeEEEEEECCCCCEEEEeeCC-Cc--EEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 024676           94 DEKHSFEH-KHIVRACAFSEDTHLLLTGGFE-KI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (264)
Q Consensus        94 ~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-~~--i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~  169 (264)
                      ........ ......++++|...+++-.... +.  |..-+++.... .......-.....+++.+.++.+..+....+.
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCE
Confidence            54333322 2457889999987777754332 23  43345543322 12222222455678877777777676666688


Q ss_pred             EEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEE-eCCCcEEEEECCCceeeeEEe
Q 024676          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN  225 (264)
Q Consensus       170 v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iwd~~~~~~~~~~~  225 (264)
                      |...|+........+........+++. ++.+..+ ...+.|...|..+++.++.+.
T Consensus       191 I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         191 AECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            999999865543333332334577776 3444444 345788888988887665553

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.28  E-value=0.04  Score=46.48  Aligned_cols=230  Identities=14%  Similarity=0.121  Sum_probs=126.8

Q ss_pred             eEEEEEeCCCCcEEEeCCCCceEEeeeCC--cCCEEEEEECC---CCcEEEEec-----CCCeEEEEeCCCCcEEEEeec
Q 024676           32 FFLVSASKDSSPMLRNGETGDWIGTFEGH--KGAVWSCCLDA---NALFSASGS-----ADFTAKLWDALTGDEKHSFEH  101 (264)
Q Consensus        32 ~~l~t~s~d~~v~i~~~~~~~~~~~~~~H--~~~V~~v~~~~---~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~  101 (264)
                      ..++.+..|+.+.-.|..+|+.+-.+..+  ... ..+.-.|   ++..++..+     ..|.|.-+|..+|+.+..+..
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~-~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP-YSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS-CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCccCcccc-eeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            45778888888887898999876555421  111 0011111   333333211     236799999999998877631


Q ss_pred             C-------------------------------CeE-EEEEECCCCCEEEEeeC-------------------CCcEEEee
Q 024676          102 K-------------------------------HIV-RACAFSEDTHLLLTGGF-------------------EKILRIFD  130 (264)
Q Consensus       102 ~-------------------------------~~v-~~~~~~~~~~~l~s~~~-------------------d~~i~~~d  130 (264)
                      .                               ..+ ....+++...+++.+..                   ...+--.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            0                               011 12456666666654321                   22344556


Q ss_pred             CCCCCCCCeEeccCCC--------CeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCceeEEecCCC------------
Q 024676          131 LNRPDAPPREVGNSSG--------SIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS------------  188 (264)
Q Consensus       131 ~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------------  188 (264)
                      +++++........+..        ...-+....++.  ..++....+|.+.++|.++++.+...+...            
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            6666654433221111        111111111222  356667788999999999999875442210            


Q ss_pred             -------------------------CEEEEEEcCCCcEEE-EeC------------------------------------
Q 024676          189 -------------------------PVTSAEVSRDGRYIT-TAD------------------------------------  206 (264)
Q Consensus       189 -------------------------~v~~~~~s~~~~~l~-~~~------------------------------------  206 (264)
                                               .....+++|+..++. ...                                    
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                                     011234555543332 111                                    


Q ss_pred             CCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       207 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+.+.-||+.+++.+=.+..........+.- .+.++.+|+.|+.+|.+|.++||++
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEe
Confidence            1246678888888765555544333322322 2567778999999999999999986

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.038  Score=41.71  Aligned_cols=204  Identities=5%  Similarity=-0.079  Sum_probs=125.5

Q ss_pred             eeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCcEEEEeec-CCeEEEEEECCCCCEEEEe-eCCCcEEEeeCCC
Q 024676           57 FEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFSEDTHLLLTG-GFEKILRIFDLNR  133 (264)
Q Consensus        57 ~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~-~~d~~i~~~d~~~  133 (264)
                      +..+...+.+++|++...++ .+-..++.|+..++..+........ ...+..++++..+..|+.+ ...+.|.+.+++.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33344457788998766555 4556678888888876654444432 2457889998866666654 4567899999875


Q ss_pred             CCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE--ECCCCceeEEe-cCCCCEEEEEEcCCCcEE-EE-eCCC
Q 024676          134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARSGKIVQTL-ETKSPVTSAEVSRDGRYI-TT-ADGS  208 (264)
Q Consensus       134 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iw--d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l-~~-~~~~  208 (264)
                      ... .............++..|..+.++.+....+..+|+  ++......... ..-.....+++.+.+..| .+ ...+
T Consensus       111 ~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         111 TQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             CSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            432 122222234677888888888777664433344455  55443332222 223456789998776544 33 3356


Q ss_pred             cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .|...|+........+.....+..++..  .+.++++=..++.|...|..+|+.+
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence            8888888765443333332334455554  3677788777888999998888754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.86  E-value=0.11  Score=44.12  Aligned_cols=152  Identities=16%  Similarity=0.090  Sum_probs=87.1

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeC---CcC-CEEEEEECCCCcEEEEec------CCCeEEEEeCCCCcEEEEee
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEG---HKG-AVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFE  100 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~---H~~-~V~~v~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~  100 (264)
                      +.+++.++.|+.+.--|.++|+.+-.+..   +.. .+.+--.-.++.. +.|+      ..|.|+-+|..+|+.+..+.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~v-ivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKV-IIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEE-EECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeE-EEeeccccccccCceEEEECCCCcEEEEee
Confidence            34688889999888889999987765532   111 1110000113433 3332      24899999999999887653


Q ss_pred             cCC---------------------------------------eEEEEEECCCCCEEEEeeCC----------------Cc
Q 024676          101 HKH---------------------------------------IVRACAFSEDTHLLLTGGFE----------------KI  125 (264)
Q Consensus       101 ~~~---------------------------------------~v~~~~~~~~~~~l~s~~~d----------------~~  125 (264)
                      ...                                       .-....+++...+++.+...                ..
T Consensus       200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence            110                                       01234566766666655322                23


Q ss_pred             EEEeeCCCCCCCCeEeccCC--------CCeEEEEEe-cCCC--eEEEEeeCCCeEEEEECCCCceeEE
Q 024676          126 LRIFDLNRPDAPPREVGNSS--------GSIRTVAWL-HSDQ--TILSSCTDSGGVRLWDARSGKIVQT  183 (264)
Q Consensus       126 i~~~d~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~--~~~~~~~~d~~v~iwd~~~~~~~~~  183 (264)
                      +--.|+++++........+.        .....+... .+++  ..++....+|.+.++|.++|+.+..
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence            55677777776554432221        111112211 1222  3566677779999999999987753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.83  E-value=0.11  Score=43.83  Aligned_cols=54  Identities=19%  Similarity=0.266  Sum_probs=35.0

Q ss_pred             cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+.=||+.+++.+=.++.........+.- .+.++.+|+.|+.++.+|.++||++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEe
Confidence            35556777776654443332222222222 3667778999999999999999986

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.73  E-value=0.1  Score=42.08  Aligned_cols=184  Identities=12%  Similarity=0.142  Sum_probs=110.5

Q ss_pred             CCcEE-EEecCCCeEEEEeCCCCcEEEE--eecCCeEEEEEEC--CCCCEEEEeeCCC------------------cEEE
Q 024676           72 NALFS-ASGSADFTAKLWDALTGDEKHS--FEHKHIVRACAFS--EDTHLLLTGGFEK------------------ILRI  128 (264)
Q Consensus        72 ~~~~l-~s~s~D~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~--~~~~~l~s~~~d~------------------~i~~  128 (264)
                      ||+++ +.-..+..|-+-|+.+.++...  .+....+..+...  |+-.+++..+.+.                  .+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            68775 5667888999999999887554  4445566766664  4556666655533                  2456


Q ss_pred             eeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC-------------------------------------CeEE
Q 024676          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-------------------------------------GGVR  171 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-------------------------------------~~v~  171 (264)
                      .|.++.+...+..  ..+....+.+.+++++.++++...                                     +.++
T Consensus       178 ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            7776554333322  234455677888888888776431                                     2234


Q ss_pred             EEECCCC---ceeEEecCCCCEEEEEEcCCCcEEEEeC--CCcEEEEECCCceee------------eEEecCCCCceee
Q 024676          172 LWDARSG---KIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLV------------KGYNMPCNTESAS  234 (264)
Q Consensus       172 iwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~i~iwd~~~~~~~------------~~~~~~~~~~~~~  234 (264)
                      +-|.++.   ..+..+........+.++|||+++.++.  +.++.++|+++...+            ......-.+.-..
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence            4454431   1222333223455678999999987654  679999999764321            1111122223334


Q ss_pred             EcCCCCCEEEEecCCCeEEEEEcC
Q 024676          235 LEPKLGNIFIAGGEDMWVHVFDFH  258 (264)
Q Consensus       235 ~~~~~~~~~~~gs~d~~v~vwd~~  258 (264)
                      |..+ |..+.+-=-|++|--|++.
T Consensus       336 fd~~-g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         336 FDGR-GNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ECTT-SEEEEEETTTTEEEEEEHH
T ss_pred             cCCC-ceEEEEeeccceEEEEecc
Confidence            5543 5555555679999999974

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.32  E-value=0.051  Score=42.82  Aligned_cols=153  Identities=13%  Similarity=0.147  Sum_probs=81.8

Q ss_pred             EEECCCCCEEEEeeCCC-----------cEEEeeCCCCCCCCeEe--ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 024676          108 CAFSEDTHLLLTGGFEK-----------ILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (264)
Q Consensus       108 ~~~~~~~~~l~s~~~d~-----------~i~~~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~d~~v~iwd  174 (264)
                      .....++++++.|+.+.           .+.+||..++.......  ..+.......++.+++..++..+.+...+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33445666666666421           25689987765433221  112111223455665544444444446899999


Q ss_pred             CCCCceeEEe--cCCCCEEEEEEcCCCcEEEEeC-C------CcEEEEECCCceeeeEEec-CC--------------CC
Q 024676          175 ARSGKIVQTL--ETKSPVTSAEVSRDGRYITTAD-G------SSVKFWDANHFGLVKGYNM-PC--------------NT  230 (264)
Q Consensus       175 ~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-~------~~i~iwd~~~~~~~~~~~~-~~--------------~~  230 (264)
                      ..+.+-...-  .....-...+..+||++++.+. .      ..+.+||..+.+=. .... ..              ..
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~  183 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADKQGLYRSDN  183 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCTTGGGTTTC
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee-ecCCCcccccccccccceeeccc
Confidence            9987653321  2222234677788998876642 1      35889998875421 1110 00              00


Q ss_pred             ceeeEcCCCCCEEEEecCCCeEEEEEcCcce
Q 024676          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (264)
Q Consensus       231 ~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~  261 (264)
                      ....+...++++++.++.+..+.+++..+..
T Consensus       184 ~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         184 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             SCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             eeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence            1112222346777777777777777766543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.22  E-value=0.043  Score=46.28  Aligned_cols=80  Identities=9%  Similarity=0.086  Sum_probs=52.1

Q ss_pred             CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      +.+.-||..+++.+...+...+...-.....+.++++|+.|+.++.+|.++++.+.+........-.-+.+..+++.+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            46778899999888877655544322233346788899999999999999998876655432211112344445554444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.10  E-value=0.22  Score=38.99  Aligned_cols=116  Identities=13%  Similarity=0.109  Sum_probs=62.8

Q ss_pred             EEEEECCCCcEEEEecCCC-----------eEEEEeCCCCcEE--EE--eecCCeEEEEEECCCCCEEEEeeCC-CcEEE
Q 024676           65 WSCCLDANALFSASGSADF-----------TAKLWDALTGDEK--HS--FEHKHIVRACAFSEDTHLLLTGGFE-KILRI  128 (264)
Q Consensus        65 ~~v~~~~~~~~l~s~s~D~-----------~v~iwd~~~~~~~--~~--~~~~~~v~~~~~~~~~~~l~s~~~d-~~i~~  128 (264)
                      .......+++.++-|+.+.           .+.+||..++.-.  ..  ..+........+.+++++++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3334455666655554321           3678998876421  11  1222223455788999999988765 67899


Q ss_pred             eeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEeeCC-----CeEEEEECCCCce
Q 024676          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKI  180 (264)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-----~~v~iwd~~~~~~  180 (264)
                      ||..+..............-...+..+++..+++.+..+     ..+.+||..+.+-
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            998654321111111111123344455555444443322     3589999988763

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.08  E-value=0.05  Score=45.97  Aligned_cols=59  Identities=12%  Similarity=0.152  Sum_probs=42.2

Q ss_pred             eEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEec
Q 024676           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (264)
Q Consensus        84 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~  142 (264)
                      .+.-||..+++.+..++...+...=.....+.++++|+.|+.++.+|.++++.+.+...
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            56678888888777776554432212233577888999999999999999987766543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.90  E-value=0.048  Score=46.11  Aligned_cols=80  Identities=13%  Similarity=0.061  Sum_probs=49.1

Q ss_pred             CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      |.+.-+|..+++.+...+...+...-.....+.++++++.|+.++.+|.++++...+........-.-+.|..+++.+++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~  523 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEE
Confidence            35667788888877766544432221122246688889999999999999998876655332222122344445555443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.87  E-value=0.065  Score=45.36  Aligned_cols=80  Identities=14%  Similarity=0.166  Sum_probs=53.9

Q ss_pred             CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      |.+.-+|+.+++.+...+...++..-.....+.++++|+.|+.++.+|.++++.+.+........-.-+.|..+++.+++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            56777888898888777655554432234467788899999999999999999877665433222222455556654443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.04  E-value=0.14  Score=43.37  Aligned_cols=80  Identities=18%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEE
Q 024676           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (264)
Q Consensus        83 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  162 (264)
                      +.+.-||..+++.+....+..+...-.....+.+++.|+.|+.++.+|.++++.+.+........-.-+.|..+++.+++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence            46777888888877776655444332233357788899999999999999998876655332211111344445554444

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.59  Score=34.81  Aligned_cols=206  Identities=13%  Similarity=-0.072  Sum_probs=112.6

Q ss_pred             cCCCeeeeEeccCCCCCeEEEEE-eCCCCcEEEeCCCCc---eEEe-eeCCcCCEEEEEECCCCcEE-EEecCCCeEEEE
Q 024676           15 HSRPVVDLFYSPITPDGFFLVSA-SKDSSPMLRNGETGD---WIGT-FEGHKGAVWSCCLDANALFS-ASGSADFTAKLW   88 (264)
Q Consensus        15 h~~~v~~~~~~~~~~~g~~l~t~-s~d~~v~i~~~~~~~---~~~~-~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iw   88 (264)
                      ....+.+|+|++   ..++|.-+ ...+.|+..++....   ...+ +......+..+++.+.+..+ .+-...+.|.+.
T Consensus        28 ~~~~~~~id~d~---~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~  104 (266)
T d1ijqa1          28 NLRNVVALDTEV---ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  104 (266)
T ss_dssp             SCSSEEEEEEET---TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEEe---CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeE
Confidence            344556788875   33344333 334444444443211   1112 22223445678887644443 455667899999


Q ss_pred             eCCCCcEEEEee-cCCeEEEEEECCCCCEEEEeeC--CCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee
Q 024676           89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (264)
Q Consensus        89 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  165 (264)
                      ++.......... .......++++|...+|+-...  ...|...+++.... .......-.....+++.+.++.+..+-.
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~~~~~~p~gl~iD~~~~~lYw~d~  183 (266)
T d1ijqa1         105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDS  183 (266)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             ecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-ecccccccceeeEEEeeccccEEEEecC
Confidence            987765444333 3345788899997666665433  34465566653321 1222222345677888777777777766


Q ss_pred             CCCeEEEEECCCCceeEEecC---CCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEE
Q 024676          166 DSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (264)
Q Consensus       166 ~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~  224 (264)
                      ..+.|...|+...........   ......+++..+..|.+-..++.|.-.+..++..+..+
T Consensus       184 ~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            668899999876543322221   12355677764333333334567777776666544433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.34  E-value=0.66  Score=35.34  Aligned_cols=86  Identities=13%  Similarity=0.050  Sum_probs=62.2

Q ss_pred             CeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEeCCCcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEec
Q 024676          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG  247 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs  247 (264)
                      ..|-|.|+...........  ...++-.+|..+.++--.+.+++++|+++.+.++.+.+++...=..|..+  +.|+-..
T Consensus        45 ~~VvIidl~n~~~~~Rrpi--~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWis~--~~L~lVT  120 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVALVT  120 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC--CCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEESSS--SEEEEEC
T ss_pred             ceEEEEECCCCCcceeccc--chhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEecCC--CEEEEEc
Confidence            4789999987653221111  12255678999888776678999999999999999999988877777753  4455443


Q ss_pred             CCCeEEEEEcC
Q 024676          248 EDMWVHVFDFH  258 (264)
Q Consensus       248 ~d~~v~vwd~~  258 (264)
                       +..|+-|+++
T Consensus       121 -~taVYHW~~~  130 (327)
T d1utca2         121 -DNAVYHWSME  130 (327)
T ss_dssp             -SSEEEEEESS
T ss_pred             -CCceEEEccc
Confidence             3559999984

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.12  E-value=1.4  Score=34.01  Aligned_cols=164  Identities=11%  Similarity=0.142  Sum_probs=81.8

Q ss_pred             CCeEEEEeCCCCcEEE-Eeec--C------CeEEEEE--ECCCCCE-EEEe---eCCCcEEEeeCCCCCCCCeEe----c
Q 024676           82 DFTAKLWDALTGDEKH-SFEH--K------HIVRACA--FSEDTHL-LLTG---GFEKILRIFDLNRPDAPPREV----G  142 (264)
Q Consensus        82 D~~v~iwd~~~~~~~~-~~~~--~------~~v~~~~--~~~~~~~-l~s~---~~d~~i~~~d~~~~~~~~~~~----~  142 (264)
                      .|.+.++|+.+..... .+..  .      -....+.  -.++++. |++.   ....+|-+|++........-.    .
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            3788888887653221 1110  0      0122332  2445553 3333   245667788775433211111    1


Q ss_pred             cCCCCeEEEEEecCCCeEEEEee---C------------CCeEEEEECCCCceeEEecCCCCEEEEEEcCCCcEEEEe--
Q 024676          143 NSSGSIRTVAWLHSDQTILSSCT---D------------SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA--  205 (264)
Q Consensus       143 ~~~~~i~~~~~~~~~~~~~~~~~---~------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--  205 (264)
                      ......+.++...++. ++++-.   .            -..-.+|....++.......-...+.++++||++++..+  
T Consensus       147 ~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeC
Confidence            1223456666666554 444421   0            022344444444433333333568999999999776443  


Q ss_pred             CCCcEEEEECCCce---eeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676          206 DGSSVKFWDANHFG---LVKGYNMPCNTESASLEPKLGNIFIAG  246 (264)
Q Consensus       206 ~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (264)
                      ..+.|+.|++....   .......+..+-.+...+..+.+.+++
T Consensus       226 ~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         226 LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            35789988886432   233334444455555555445544443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.65  E-value=3.1  Score=34.54  Aligned_cols=54  Identities=20%  Similarity=0.255  Sum_probs=35.4

Q ss_pred             cEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEecCCCeEEEEEcCcceee
Q 024676          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      .+.=+|+.+++..=.+..+.......+.. .+.++.+|+.|+.+|-+|.+|||++
T Consensus       467 ~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         467 SLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEe
Confidence            45556777776654444433322222222 2556778999999999999999986

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=1.9  Score=31.84  Aligned_cols=217  Identities=6%  Similarity=-0.130  Sum_probs=124.1

Q ss_pred             CcEEEeCCCCceEEeeeCCcCCEEEEEECCCCcEE-EEecCCCeEEEEeCCCCc----EEEEee-cCCeEEEEEECCCCC
Q 024676           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGD----EKHSFE-HKHIVRACAFSEDTH  115 (264)
Q Consensus        42 ~v~i~~~~~~~~~~~~~~H~~~V~~v~~~~~~~~l-~s~s~D~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~  115 (264)
                      .|+..++.+......+. ....+.+++|++....+ .+-..++.|+--++....    ...... ....+..+++++.++
T Consensus        11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            46667776654333333 33456788998776655 444556667666554321    111121 223456788888666


Q ss_pred             EEEEe-eCCCcEEEeeCCCCCCCCeEeccCCCCeEEEEEecCCCeEEEEee-CCCeEEEEECCCCceeEEec-CCCCEEE
Q 024676          116 LLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTLE-TKSPVTS  192 (264)
Q Consensus       116 ~l~s~-~~d~~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~-~~~~v~~  192 (264)
                      .|+-+ ...+.|.+.+++.... .............++..|..+.++.+.. ..+.|.-.++.......... .-...+.
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~g  168 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  168 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             eEEEEecCCCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeE
Confidence            66654 4567899999875432 1222223345677777777777766543 23456666666444333332 2245788


Q ss_pred             EEEcCCCcEE-EE-eCCCcEEEEECCCceeeeEEecC---CCCceeeEcCCCCCEEEEecCCCeEEEEEcCccee
Q 024676          193 AEVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (264)
Q Consensus       193 ~~~s~~~~~l-~~-~~~~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~v~vwd~~~g~~  262 (264)
                      +++.+.+..| .+ ...+.|...|+............   ..+..++..  .+.++++-..++.|+..+..+|+.
T Consensus       169 l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcc
Confidence            9999876544 33 33568888888654433223222   123344444  367777877788888888777753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.86  E-value=3  Score=32.98  Aligned_cols=102  Identities=12%  Similarity=0.048  Sum_probs=58.2

Q ss_pred             CEEEEEECCCCcEEE-Eec----CCCeEEEEeCCCCcEEEEeecCCeEEEEEECCCCCEEEEeeCC--------------
Q 024676           63 AVWSCCLDANALFSA-SGS----ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE--------------  123 (264)
Q Consensus        63 ~V~~v~~~~~~~~l~-s~s----~D~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------------  123 (264)
                      .+..++++|++++++ +-+    .-..+++.|+.+++.+...-.......+.|.++++.|+....+              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            345567899998875 322    2348999999999755422111112457899999887754432              


Q ss_pred             --CcEEEeeCCCCCCCCeEeccCC---CCeEEEEEecCCCeEEEEe
Q 024676          124 --KILRIFDLNRPDAPPREVGNSS---GSIRTVAWLHSDQTILSSC  164 (264)
Q Consensus       124 --~~i~~~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~  164 (264)
                        ..+..+.+.+............   .....+..++++.++++..
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence              2466677765433323332221   1233444556666665543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.38  E-value=4.4  Score=31.31  Aligned_cols=122  Identities=10%  Similarity=0.162  Sum_probs=78.5

Q ss_pred             CEEEEEE--CCC-Cc-EEEEecCCCeEEEEeCC---CC----cEEEEeecCCeEEEEEECCCCCEEEEeeCCCcEEEeeC
Q 024676           63 AVWSCCL--DAN-AL-FSASGSADFTAKLWDAL---TG----DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (264)
Q Consensus        63 ~V~~v~~--~~~-~~-~l~s~s~D~~v~iwd~~---~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~d~  131 (264)
                      .++.+|+  ++. +. +++....+|.+..|.+.   .+    ..++.+.....+..|.+++..+.|+.+=.+.-+..++.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            4677777  554 43 55667778999888763   23    24455666777899999999889998877766666665


Q ss_pred             CCCCC-CCeEe-----ccCCCCeEEEEEec---CCCeEEEEeeCCCeEEEEECCCC-ceeEEe
Q 024676          132 NRPDA-PPREV-----GNSSGSIRTVAWLH---SDQTILSSCTDSGGVRLWDARSG-KIVQTL  184 (264)
Q Consensus       132 ~~~~~-~~~~~-----~~~~~~i~~~~~~~---~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~  184 (264)
                      +-... .....     ....+.+..++...   ..++++++...+++..|||.++. +.+..+
T Consensus       209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             ccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            42111 11111     12345667776542   24577888778899999998774 555444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.60  E-value=4.8  Score=30.83  Aligned_cols=135  Identities=17%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             CCcEEEeeCCCCCCCCeEec---cC----CCCeEEEEEe--cCCCeEEEEee---CCCeEEEEECCCCc-ee---EEecC
Q 024676          123 EKILRIFDLNRPDAPPREVG---NS----SGSIRTVAWL--HSDQTILSSCT---DSGGVRLWDARSGK-IV---QTLET  186 (264)
Q Consensus       123 d~~i~~~d~~~~~~~~~~~~---~~----~~~i~~~~~~--~~~~~~~~~~~---~d~~v~iwd~~~~~-~~---~~~~~  186 (264)
                      .|.|.++|+.+.........   ..    ......+...  +++...|.+..   ...+|.+|++.... .+   .++..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            37788888865543322211   10    1123444432  33443344332   33578888875432 22   22322


Q ss_pred             --CCCEEEEEEcCCCcEEEEeCC------------------CcEEEEECCCceeeeEEecCCCCceeeEcCCCCCEEEEe
Q 024676          187 --KSPVTSAEVSRDGRYITTADG------------------SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG  246 (264)
Q Consensus       187 --~~~v~~~~~s~~~~~l~~~~~------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  246 (264)
                        ....+.+.+..++.++++-+.                  +.+..||....+.+  ...-..++-++++++...++++-
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~--~~~l~~pNGI~~s~d~~~lyVa~  224 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV--AEGFDFANGINISPDGKYVYIAE  224 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE--EEEESSEEEEEECTTSSEEEEEE
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE--cCCCCccceeEECCCCCEEEEEe
Confidence              245889999989888777321                  12344454333222  11112345567777655677788


Q ss_pred             cCCCeEEEEEcCc
Q 024676          247 GEDMWVHVFDFHT  259 (264)
Q Consensus       247 s~d~~v~vwd~~~  259 (264)
                      ...+.|+.|+++.
T Consensus       225 t~~~~i~~y~~~~  237 (340)
T d1v04a_         225 LLAHKIHVYEKHA  237 (340)
T ss_dssp             GGGTEEEEEEECT
T ss_pred             CCCCeEEEEEeCC
Confidence            8889999998763

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.46  E-value=3.9  Score=29.71  Aligned_cols=92  Identities=15%  Similarity=0.137  Sum_probs=43.1

Q ss_pred             CeEEEEECCCCceeEEecC--CCCEEEEEEcCCCcEEEEeCC-----CcEEEEECCCceeeeEEecCCCCc--eeeEcCC
Q 024676          168 GGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADG-----SSVKFWDANHFGLVKGYNMPCNTE--SASLEPK  238 (264)
Q Consensus       168 ~~v~iwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~  238 (264)
                      ..+..||..+.+....-..  .....+.....+..++..+.+     .....+|..+.+-...-..+....  ..+..  
T Consensus       164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--  241 (288)
T d1zgka1         164 NSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--  241 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred             ceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE--
Confidence            3478888877654321111  111122333333233333322     245677776654322111222111  22222  


Q ss_pred             CCCEEEEecCCCe-----EEEEEcCcce
Q 024676          239 LGNIFIAGGEDMW-----VHVFDFHTGE  261 (264)
Q Consensus       239 ~~~~~~~gs~d~~-----v~vwd~~~g~  261 (264)
                      ++++++.||.++.     +.+||..+++
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCCE
Confidence            4788888876543     6788877643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.21  E-value=5.2  Score=30.86  Aligned_cols=203  Identities=13%  Similarity=0.210  Sum_probs=113.7

Q ss_pred             eeEeccCCCCCeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEEC------CCCcEEEEec-CC---CeEEEEeC
Q 024676           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD------ANALFSASGS-AD---FTAKLWDA   90 (264)
Q Consensus        21 ~~~~~~~~~~g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~~------~~~~~l~s~s-~D---~~v~iwd~   90 (264)
                      +|=.+|..|+..++++..+.+-+.+||+. |+.++.+..  +.++.|..-      .....++.++ ++   .++.+|.+
T Consensus        30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i  106 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (353)
T ss_dssp             EEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred             eEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence            56677777888898888888889999985 877766642  345544432      2232333333 32   36888877


Q ss_pred             CC-CcEEEEeec--------CCeEEEEEE--CCC-CC-EEEEeeCCCcEEEeeCCC---CCCCCeE--eccCCCCeEEEE
Q 024676           91 LT-GDEKHSFEH--------KHIVRACAF--SED-TH-LLLTGGFEKILRIFDLNR---PDAPPRE--VGNSSGSIRTVA  152 (264)
Q Consensus        91 ~~-~~~~~~~~~--------~~~v~~~~~--~~~-~~-~l~s~~~d~~i~~~d~~~---~~~~~~~--~~~~~~~i~~~~  152 (264)
                      .. ...+..+..        ...+..+|+  +|. +. +++....++.+..|.+..   +......  .......+..++
T Consensus       107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCV  186 (353)
T d1h6la_         107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMA  186 (353)
T ss_dssp             ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEE
T ss_pred             cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEE
Confidence            43 223333321        113566666  664 44 345556678888887632   1111111  122334566677


Q ss_pred             EecCCCeEEEEeeCCCeEEEEECC--C---CceeEEec---CCCCEEEEEE--cCC--CcEEEEeC-CCcEEEEECCC-c
Q 024676          153 WLHSDQTILSSCTDSGGVRLWDAR--S---GKIVQTLE---TKSPVTSAEV--SRD--GRYITTAD-GSSVKFWDANH-F  218 (264)
Q Consensus       153 ~~~~~~~~~~~~~~d~~v~iwd~~--~---~~~~~~~~---~~~~v~~~~~--s~~--~~~l~~~~-~~~i~iwd~~~-~  218 (264)
                      +-+..+.++++ -++..|..++++  .   +..+....   ....+..+++  .++  |.+|+++. +.+..+||-.. +
T Consensus       187 vDde~~~Lyis-EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         187 ADDEYGSLYIA-EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             EETTTTEEEEE-ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             EeCCCCcEEEe-cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            66666776665 444445444543  1   22222222   1235666654  333  34455655 47899999876 5


Q ss_pred             eeeeEEecC
Q 024676          219 GLVKGYNMP  227 (264)
Q Consensus       219 ~~~~~~~~~  227 (264)
                      +.+..|.+.
T Consensus       266 ~~~g~F~i~  274 (353)
T d1h6la_         266 KYVADFQIT  274 (353)
T ss_dssp             CEEEEEEEC
T ss_pred             cccceEEEe
Confidence            777787753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.92  E-value=8.3  Score=30.24  Aligned_cols=232  Identities=11%  Similarity=0.021  Sum_probs=112.4

Q ss_pred             CCCCCeEEEEE-eCCC----CcEEEeCCCCceEE-eeeCCcCCEEEEEECCCCcEEEEecC----------------CCe
Q 024676           27 ITPDGFFLVSA-SKDS----SPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA----------------DFT   84 (264)
Q Consensus        27 ~~~~g~~l~t~-s~d~----~v~i~~~~~~~~~~-~~~~H~~~V~~v~~~~~~~~l~s~s~----------------D~~   84 (264)
                      .+||+++|+-+ +..|    .+++.|+.+|+.+. .+..  .....++|.+|+..|.-...                ...
T Consensus       132 ~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~  209 (430)
T d1qfma1         132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (430)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             ecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence            35699887643 3333    57889999998764 3321  11135789999887643322                236


Q ss_pred             EEEEeCCCCc--EEEEeec---CCeEEEEEECCCCCEEEEee---CCCc--EEEeeCCCCCCC------Ce-EeccCCCC
Q 024676           85 AKLWDALTGD--EKHSFEH---KHIVRACAFSEDTHLLLTGG---FEKI--LRIFDLNRPDAP------PR-EVGNSSGS  147 (264)
Q Consensus        85 v~iwd~~~~~--~~~~~~~---~~~v~~~~~~~~~~~l~s~~---~d~~--i~~~d~~~~~~~------~~-~~~~~~~~  147 (264)
                      |..+.+.+..  ....++-   ...+..+..++++++++...   .+..  +.+.++......      .. ........
T Consensus       210 v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  289 (430)
T d1qfma1         210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE  289 (430)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC
T ss_pred             EEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccc
Confidence            7777877653  2233331   22466777899998876432   2333  334454322111      11 11111222


Q ss_pred             eEEEEEecCCCeEEEEee--CCCeEEEEECCCCce---eEEecCC-CCEEEEEEcCCCcE-EEE-eCC--CcEEEEECCC
Q 024676          148 IRTVAWLHSDQTILSSCT--DSGGVRLWDARSGKI---VQTLETK-SPVTSAEVSRDGRY-ITT-ADG--SSVKFWDANH  217 (264)
Q Consensus       148 i~~~~~~~~~~~~~~~~~--~d~~v~iwd~~~~~~---~~~~~~~-~~v~~~~~s~~~~~-l~~-~~~--~~i~iwd~~~  217 (264)
                      ..-+. ...+..++.+--  .++.|-..++.....   ...+..+ ..+..-.++..+.+ ++. -.+  ..|++++...
T Consensus       290 ~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~  368 (430)
T d1qfma1         290 YDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT  368 (430)
T ss_dssp             EEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT
T ss_pred             eEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCC
Confidence            22222 122223333321  225566666654322   1122222 33443333333333 333 234  3689999987


Q ss_pred             ceeeeEEecCCCCce-eeEcCCCCCEEEEecC---CCeEEEEEcCcce
Q 024676          218 FGLVKGYNMPCNTES-ASLEPKLGNIFIAGGE---DMWVHVFDFHTGE  261 (264)
Q Consensus       218 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gs~---d~~v~vwd~~~g~  261 (264)
                      +.....+..+..... ....+....++++.+.   =.+++-+|+++|+
T Consensus       369 ~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         369 GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            765443332222111 1112222334444332   2568888988885

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=83.39  E-value=6.1  Score=28.32  Aligned_cols=215  Identities=13%  Similarity=0.105  Sum_probs=101.5

Q ss_pred             CeEEEEEeCCCCcEEEeCCCCceEEeeeCCcCCEEEEEE-CCCCcEEEE------ecCCCeEEEEeCCCCcEEEEeecCC
Q 024676           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL-DANALFSAS------GSADFTAKLWDALTGDEKHSFEHKH  103 (264)
Q Consensus        31 g~~l~t~s~d~~v~i~~~~~~~~~~~~~~H~~~V~~v~~-~~~~~~l~s------~s~D~~v~iwd~~~~~~~~~~~~~~  103 (264)
                      .++|+.+...|.+.++-+..++.++-   .+.+|....- .+.-.++.-      |..-+.+.+-++.-......++...
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkL---tkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk  102 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKL---NREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK  102 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEEC---CSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEE---ecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence            35788888899999987776664422   2233322211 111112111      1111233444443211222333334


Q ss_pred             e--EEEEEECCCCCEEEEeeCCCcEEEeeCCCCCCCCe-EeccC-------CCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 024676          104 I--VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNS-------SGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (264)
Q Consensus       104 ~--v~~~~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~-------~~~i~~~~~~~~~~~~~~~~~~d~~v~iw  173 (264)
                      +  +.++++. +...+++|+......+|-++.+....- ...+.       ...+..+-+...+.         ....+=
T Consensus       103 ~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~---------~sfF~a  172 (313)
T d2hu7a1         103 PMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGR---------VSLFTS  172 (313)
T ss_dssp             SBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTE---------EEEEEE
T ss_pred             eEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCc---------ceEEEE
Confidence            4  4455443 345677787777777887776543211 11111       11122222221111         123333


Q ss_pred             ECCCCceeEEecCCCCEEEEEEcCCCcEEEEe----CCCcEEEEECCCceeeeEEecC------CCCceee---EcCCCC
Q 024676          174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTA----DGSSVKFWDANHFGLVKGYNMP------CNTESAS---LEPKLG  240 (264)
Q Consensus       174 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~~i~iwd~~~~~~~~~~~~~------~~~~~~~---~~~~~~  240 (264)
                      |+.+|...---.....+++....++.+..+.-    +...| .+|++.+.- ....++      ..+..+.   ..| ++
T Consensus       173 dl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywi-t~D~~s~~y-erve~P~kd~~sy~p~~I~~~~Y~P-dd  249 (313)
T d2hu7a1         173 NLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLV-TVDPRDGSV-EDLELPSKDFSSYRPTAITWLGYLP-DG  249 (313)
T ss_dssp             ETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEE-EECTTTCCE-EECCCSSCHHHHHCCSEEEEEEECT-TS
T ss_pred             ecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEE-EEecccCce-eeeecCcccceeecceEEEeeeeCC-CC
Confidence            55444422111233456666777777663321    22345 458874321 122222      1233344   556 47


Q ss_pred             CEEEEecCCCeEEEEEcCcceee
Q 024676          241 NIFIAGGEDMWVHVFDFHTGEQI  263 (264)
Q Consensus       241 ~~~~~gs~d~~v~vwd~~~g~~i  263 (264)
                      ++++.+--||.-++|.  +|+.+
T Consensus       250 ~L~iiakrdG~s~lF~--nGk~i  270 (313)
T d2hu7a1         250 RLAVVARREGRSAVFI--DGERV  270 (313)
T ss_dssp             CEEEEEEETTEEEEEE--TTEEE
T ss_pred             cEEEEEecCCchheee--cceEe
Confidence            7878888899999997  57665