Citrus Sinensis ID: 024687

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTITFS
ccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccEEEEEccccccc
ccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEcccccccccEEEEEEEEEEcc
MGKDVEVAeqqggggefsakdyhdpppaplidfeelgkWSFYRAVIAEFIATLLFLYVTVLTVIGyksqtdpnlntdqcggvGILGIAWAFGGMIFILVYCTagisgghinpaVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYnryggganeladgynkgtglgaEIIGTFVLVYTVFsatdpkrsardshvpvlaplpiGFAVFMVHLAtipitgtginparsfGAAVIynkekawdDQVLQFFHYTITFS
MGKDVEVAEqqggggefsakdyhdPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTITFS
MGKDVEVAeqqggggeFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAtllflyvtvltvIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTITFS
*****************************LIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD*******SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTITF*
************************PPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTITFS
*************GGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTITFS
********************DYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQT****NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTITFS
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
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MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTITFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query264 2.2.26 [Sep-21-2011]
Q6K215288 Probable aquaporin PIP2-2 yes no 0.946 0.868 0.838 1e-122
Q9FF53291 Probable aquaporin PIP2-4 yes no 0.939 0.852 0.833 1e-120
Q9ATM6288 Aquaporin PIP2-4 OS=Zea m N/A no 0.946 0.868 0.834 1e-120
Q9ATM4287 Aquaporin PIP2-7 OS=Zea m N/A no 0.943 0.867 0.818 1e-119
Q9ATM7289 Aquaporin PIP2-3 OS=Zea m N/A no 0.939 0.858 0.833 1e-118
P43286287 Aquaporin PIP2-1 OS=Arabi no no 0.939 0.864 0.829 1e-117
Q84RL7290 Aquaporin PIP2-1 OS=Zea m N/A no 0.950 0.865 0.822 1e-117
P43287285 Aquaporin PIP2-2 OS=Arabi no no 0.931 0.863 0.825 1e-116
Q9ATM8292 Aquaporin PIP2-2 OS=Zea m N/A no 0.950 0.859 0.800 1e-116
Q9SV31286 Probable aquaporin PIP2-5 no no 0.924 0.853 0.819 1e-116
>sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1 Back     alignment and function desciption
 Score =  436 bits (1121), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/254 (83%), Positives = 227/254 (89%), Gaps = 4/254 (1%)

Query: 1   MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTV 60
           M KD+E +  +GG  EFSAKDY DPPPAPLID EEL KWS YRAVIAEFIATLLFLY+TV
Sbjct: 1   MAKDIEASAPEGG--EFSAKDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITV 58

Query: 61  LTVIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL 118
            TVIGYK Q+D  +NT    C GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL
Sbjct: 59  ATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL 118

Query: 119 FLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAE 178
           FL RKVSLIRA+LY++AQCLGAICG G VK FQ SYY RYGGGANEL+DGY+KGTGLGAE
Sbjct: 119 FLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSKGTGLGAE 178

Query: 179 IIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 238
           IIGTFVLVYTVFSATDPKR+ARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARS G
Sbjct: 179 IIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLG 238

Query: 239 AAVIYNKEKAWDDQ 252
            AVIYNK+KAWDDQ
Sbjct: 239 TAVIYNKDKAWDDQ 252
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9FF53|PIP24_ARATH Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM6|PIP24_MAIZE Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM7|PIP23_MAIZE Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|P43286|PIP21_ARATH Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q84RL7|PIP21_MAIZE Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2 Back     alignment and function description
>sp|P43287|PIP22_ARATH Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2 Back     alignment and function description
>sp|Q9ATM8|PIP22_MAIZE Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SV31|PIP25_ARATH Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
255578852287 Aquaporin PIP2.1, putative [Ricinus comm 0.946 0.871 0.936 1e-133
1657948287 MipC [Mesembryanthemum crystallinum] 0.946 0.871 0.908 1e-130
255557012288 Aquaporin PIP2.2, putative [Ricinus comm 0.943 0.864 0.892 1e-128
82659447281 aquaporin [Stevia rebaudiana] 0.905 0.850 0.934 1e-127
260408312288 plasma membrane intrinsic protein [Hevea 0.943 0.864 0.880 1e-126
330717899278 plasma membrane intrinsic protein [Hevea 0.943 0.895 0.888 1e-126
383479030285 aquaporin PIP2;2 [Quercus petraea] 0.939 0.870 0.888 1e-126
224068717285 aquaporin, MIP family, PIP subfamily [Po 0.931 0.863 0.869 1e-125
300793598271 TPA_inf: aquaporin PIP2;10 [Gossypium hi 0.939 0.915 0.892 1e-125
58700408283 putative plasma membrane intrinsic prote 0.924 0.862 0.888 1e-125
>gi|255578852|ref|XP_002530280.1| Aquaporin PIP2.1, putative [Ricinus communis] gi|223530178|gb|EEF32087.1| Aquaporin PIP2.1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/252 (93%), Positives = 241/252 (95%), Gaps = 2/252 (0%)

Query: 1   MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTV 60
           M KDVEVAE  GG  EFSAKDYHDPPPAPLID +ELGKWSFYRA+IAEFIATLLFLY+TV
Sbjct: 1   MAKDVEVAEATGG--EFSAKDYHDPPPAPLIDVDELGKWSFYRALIAEFIATLLFLYITV 58

Query: 61  LTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL 120
           LTVIGYKSQTDP+ N D CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL
Sbjct: 59  LTVIGYKSQTDPDKNADACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL 118

Query: 121 GRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEII 180
           GRKVSLIRAL YMVAQCLGAICGCG VKAFQK+YYNRYGGGANELADGYNKGTGLGAEII
Sbjct: 119 GRKVSLIRALGYMVAQCLGAICGCGLVKAFQKAYYNRYGGGANELADGYNKGTGLGAEII 178

Query: 181 GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 240
           GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA
Sbjct: 179 GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 238

Query: 241 VIYNKEKAWDDQ 252
           VIYNKEKAWDDQ
Sbjct: 239 VIYNKEKAWDDQ 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|1657948|gb|AAB18227.1| MipC [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|255557012|ref|XP_002519539.1| Aquaporin PIP2.2, putative [Ricinus communis] gi|223541402|gb|EEF42953.1| Aquaporin PIP2.2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|82659447|gb|ABB88840.1| aquaporin [Stevia rebaudiana] Back     alignment and taxonomy information
>gi|260408312|gb|ACX37450.1| plasma membrane intrinsic protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|330717899|gb|AEC45513.1| plasma membrane intrinsic protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|383479030|gb|AFH36337.1| aquaporin PIP2;2 [Quercus petraea] Back     alignment and taxonomy information
>gi|224068717|ref|XP_002326182.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118489416|gb|ABK96511.1| unknown [Populus trichocarpa x Populus deltoides] gi|222833375|gb|EEE71852.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|300793598|tpg|DAA33865.1| TPA_inf: aquaporin PIP2;10 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|58700408|gb|AAW80918.1| putative plasma membrane intrinsic protein [Astragalus membranaceus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.890 0.807 0.825 2.5e-104
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.935 0.860 0.784 8.8e-102
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.928 0.859 0.780 1.8e-101
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.886 0.818 0.803 3.8e-101
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.928 0.859 0.772 1.5e-99
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.859 0.810 0.798 3.2e-97
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.890 0.813 0.770 1.8e-96
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.856 0.812 0.793 2.6e-95
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.901 0.790 0.692 2e-86
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.856 0.787 0.719 8.9e-86
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 194/235 (82%), Positives = 203/235 (86%)

Query:    18 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTD 77
             +A+DY DPPPAP  D EEL KW  YRAVIAEF+A            IGYK+QTD      
Sbjct:    14 AARDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGV 73

Query:    78 QCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQC 137
              CGGVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFL RKVSL+R +LY+VAQC
Sbjct:    74 DCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQC 133

Query:   138 LGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 197
             LGAICGCGFVKAFQ SYY RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR
Sbjct:   134 LGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 193

Query:   198 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQ 252
             +ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQ
Sbjct:   194 NARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQ 248
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;RCA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0048767 "root hair elongation" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25794PIP2_PEANo assigned EC number0.71360.85980.7854N/Ano
Q8GRI8PIP25_ORYSJNo assigned EC number0.78740.92800.8657nono
Q8LAA6PIP15_ARATHNo assigned EC number0.73570.90150.8292nono
P93004PIP27_ARATHNo assigned EC number0.81370.90150.85nono
P43287PIP22_ARATHNo assigned EC number0.82530.93180.8631nono
P43286PIP21_ARATHNo assigned EC number0.82930.93930.8641nono
Q84RL7PIP21_MAIZENo assigned EC number0.82280.95070.8655N/Ano
Q8H5N9PIP21_ORYSJNo assigned EC number0.82280.95070.8655nono
P30302PIP23_ARATHNo assigned EC number0.82140.93180.8631nono
Q9AQU5PIP13_MAIZENo assigned EC number0.72100.85980.7773N/Ano
Q8GRT8PIP24_ORYSJNo assigned EC number0.79130.93930.8671nono
Q9AR14PIP15_MAIZENo assigned EC number0.72530.85980.7881N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.78340.94690.8680N/Ano
P61837PIP11_ARATHNo assigned EC number0.72950.90150.8321nono
Q08451PIP1_SOLLCNo assigned EC number0.71190.89770.8286N/Ano
Q08733PIP13_ARATHNo assigned EC number0.73360.90150.8321nono
P61838PIP11_VICFANo assigned EC number0.72950.90150.8321N/Ano
P42767PIP1_ATRCANo assigned EC number0.76510.90900.8510N/Ano
Q06611PIP12_ARATHNo assigned EC number0.72950.90150.8321nono
Q9ATN0PIP16_MAIZENo assigned EC number0.70430.84840.7567N/Ano
Q9ZV07PIP26_ARATHNo assigned EC number0.78570.93560.8546nono
Q6K215PIP22_ORYSJNo assigned EC number0.83850.94690.8680yesno
Q39196PIP14_ARATHNo assigned EC number0.71200.92420.8501nono
Q9SV31PIP25_ARATHNo assigned EC number0.81960.92420.8531nono
Q7XUA6PIP23_ORYSJNo assigned EC number0.82770.89390.8137nono
Q9XF59PIP12_MAIZENo assigned EC number0.71670.85980.7854N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.79520.93180.8631N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.83330.93930.8522yesno
Q9ZVX8PIP28_ARATHNo assigned EC number0.78960.90530.8597nono
Q9ATM4PIP27_MAIZENo assigned EC number0.81810.94310.8675N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.76920.90900.8510nono
Q9ATM6PIP24_MAIZENo assigned EC number0.83460.94690.8680N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.83330.93930.8581N/Ano
Q6EU94PIP11_ORYSJNo assigned EC number0.70660.88250.8062nono
Q9ATM8PIP22_MAIZENo assigned EC number0.80070.95070.8595N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_280159
SubName- Full=Putative uncharacterized protein; (285 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
pfam00230218 pfam00230, MIP, Major intrinsic protein 9e-88
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-66
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 9e-56
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-37
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 7e-32
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 9e-31
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 4e-28
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 3e-27
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 7e-18
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-14
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-13
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-13
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 7e-13
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 0.001
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 0.004
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  259 bits (664), Expect = 9e-88
 Identities = 112/217 (51%), Positives = 135/217 (62%), Gaps = 18/217 (8%)

Query: 35  ELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGM 94
           EL   SF+RAVIAEF+ATLLF++  V + +G K               G+L +A AFG  
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----------GLLAVALAFGLA 49

Query: 95  IFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSY 154
           +F LVYCT  ISG H+NPAVTF L +GR++SL+RA+ Y++AQ LGAICG   +K      
Sbjct: 50  LFTLVYCTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNG- 108

Query: 155 YNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 214
             R GG AN LA G N G     EII TF LVYTVF+ TD  R+    HV   APL IGF
Sbjct: 109 LQRAGGFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGF 165

Query: 215 AVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDD 251
           AVF+ HLA  P TG  +NPARSFG AV+  K   WDD
Sbjct: 166 AVFLNHLAGGPYTGASMNPARSFGPAVVLWK---WDD 199

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 264
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.63
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.6
PLN00026298 aquaporin NIP; Provisional 99.59
PLN00183274 putative aquaporin NIP7; Provisional 99.58
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.5
PLN00184296 aquaporin NIP1; Provisional 99.43
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.42
PLN00166250 aquaporin TIP2; Provisional 99.37
PRK05420231 aquaporin Z; Provisional 99.32
PLN00027252 aquaporin TIP; Provisional 99.3
PTZ00016294 aquaglyceroporin; Provisional 99.26
PLN00167256 aquaporin TIP5; Provisional 99.19
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.16
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.14
KOG0224316 consensus Aquaporin (major intrinsic protein famil 97.78
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-50  Score=342.61  Aligned_cols=208  Identities=52%  Similarity=0.807  Sum_probs=188.1

Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhcccCcccchhh
Q 024687           35 ELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAV  114 (264)
Q Consensus        35 ~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~l~~~i~~~~~iSGah~NPav  114 (264)
                      +...++.+|++++||++|++++|++|+++......         ....+.+.+++++|+.+++.+++++++||||+||||
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---------~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAV   74 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---------GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAV   74 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCCchhHHHHHHHHHHHHHHHhhhccccccccCHHH
Confidence            45678999999999999999999999988765531         133467889999999999999999999999999999


Q ss_pred             HHHHHHccCCccchhhHHhhhhhhHHHHHHHHHHhhhhhhhhhcCCCccccCCCCcchhhHHHHHHHHHHHHHHHHH-hc
Q 024687          115 TFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS-AT  193 (264)
Q Consensus       115 Tla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~E~~~T~iL~~~il~-~~  193 (264)
                      |+++++.|++++.++..|+++|++|+++|+++++.+.+.+.+..+...+.+.++.+..|+++.|++.||+|+++++. ..
T Consensus        75 T~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~  154 (238)
T KOG0223|consen   75 TLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATAT  154 (238)
T ss_pred             HHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEee
Confidence            99999999999999999999999999999999999998864455556677889999999999999999999999998 77


Q ss_pred             CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCCCcccccchhHHHHhhCCCCCCCccEEEEeeccc
Q 024687          194 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQVLQFFHYTI  261 (264)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~g~~tG~~~NPAr~~gp~i~~~~~~~w~~~wvywv~P~~  261 (264)
                      |+|++       .+.|+.||+++.+.+++.+++||++|||||+|||+++++   .|++|||||++|++
T Consensus       155 d~~~~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~  212 (238)
T KOG0223|consen  155 DPRRS-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLL  212 (238)
T ss_pred             cCCCc-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHH
Confidence            77764       478999999999999999999999999999999999987   59999999999986

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-99
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-99
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-99
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-99
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-99
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 5e-35
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 6e-33
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 2e-27
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 2e-27
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 3e-27
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 5e-26
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 7e-23
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 5e-22
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 1e-21
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 1e-20
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-20
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 5e-16
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 5e-16
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-15
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-15
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 2e-15
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 5e-14
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-13
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 5e-13
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 6e-13
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 3e-10
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 9e-10
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-09
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 5e-09
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  359 bits (921), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/233 (75%), Positives = 190/233 (81%), Gaps = 6/233 (2%)
Query: 20  KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQC 79
           KDY DPPPAP  D  EL  WSF+RA IAEFIA            IG+  +T        C
Sbjct: 16  KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VC 69
Query: 80  GGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG 139
           G VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQCLG
Sbjct: 70  GSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLG 129
Query: 140 AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 199
           AICG G VKAF K  YN++GGGAN +A GYNKGT LGAEIIGTFVLVYTVFSATDPKRSA
Sbjct: 130 AICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSA 189
Query: 200 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQ 252
           RDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N  K WDDQ
Sbjct: 190 RDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQ 242
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-125
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-102
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 8e-95
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-93
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 7e-92
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-91
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 3e-90
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 4e-90
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 9e-88
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-87
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 3e-68
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 5e-43
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-42
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  356 bits (916), Expect = e-125
 Identities = 190/252 (75%), Positives = 205/252 (81%), Gaps = 10/252 (3%)

Query: 1   MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTV 60
           M K+V    Q         KDY DPPPAP  D  EL  WSF+RA IAEFIATLLFLY+TV
Sbjct: 24  MSKEVSEEAQ----AHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITV 79

Query: 61  LTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL 120
            TVIG+  +T        CG VG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL
Sbjct: 80  ATVIGHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 133

Query: 121 GRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEII 180
            RKV L+RAL+YM+AQCLGAICG G VKAF K  YN++GGGAN +A GYNKGT LGAEII
Sbjct: 134 ARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEII 193

Query: 181 GTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 240
           GTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAA
Sbjct: 194 GTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAA 253

Query: 241 VIYNKEKAWDDQ 252
           VI+N  K WDDQ
Sbjct: 254 VIFNSNKVWDDQ 265
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.65
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.41
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.4
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.39
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.38
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.37
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.33
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.32
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.32
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.31
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.29
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.27
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.25
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=9.7e-59  Score=411.22  Aligned_cols=252  Identities=76%  Similarity=1.243  Sum_probs=194.0

Q ss_pred             CCCcccchhccCCCCcccccCCCCCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Q 024687            1 MGKDVEVAEQQGGGGEFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCG   80 (264)
Q Consensus         1 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~   80 (264)
                      |.||.|..+|    +..+.||+++|++.+..+.+|.++++++|++++||+||++|+|++++++.........      ..
T Consensus        24 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~------~~   93 (304)
T 3cn5_A           24 MSKEVSEEAQ----AHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV------CG   93 (304)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCST------TC
T ss_pred             HHHHhhcccc----ccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCC------CC
Confidence            5677655211    2234599999999999999999999999999999999999999999987764432211      23


Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHccCCccchhhHHhhhhhhHHHHHHHHHHhhhhhhhhhcCC
Q 024687           81 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG  160 (264)
Q Consensus        81 ~~g~~~~~~~~g~~l~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~  160 (264)
                      ..+.+.+++++|+++++.+++++++||||+|||||+++++.|+++|.+++.|+++|++||++|+++++.++++.++..+.
T Consensus        94 ~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~  173 (304)
T 3cn5_A           94 SVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGG  173 (304)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTT
T ss_pred             CCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999987776665


Q ss_pred             CccccCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCCCcccccchhHHH
Q 024687          161 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAA  240 (264)
Q Consensus       161 ~~~~~~~~~~~~~~f~~E~~~T~iL~~~il~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~g~~tG~~~NPAr~~gp~  240 (264)
                      +.+.+.++++..++|+.|+++||+|+++|+.+.|+++..+.++.+.+.|+.||+++++++++.+++||++||||||||||
T Consensus       174 g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPa  253 (304)
T 3cn5_A          174 GANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAA  253 (304)
T ss_dssp             TCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             cccccCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHH
Confidence            65656678899999999999999999999998887654432222348999999999999999999999999999999999


Q ss_pred             HhhCCCCCCCccEEEEeecccc
Q 024687          241 VIYNKEKAWDDQVLQFFHYTIT  262 (264)
Q Consensus       241 i~~~~~~~w~~~wvywv~P~~~  262 (264)
                      ++++++..|+|+||||++|++.
T Consensus       254 l~~~~~~~w~~~WvywvgPiiG  275 (304)
T 3cn5_A          254 VIFNSNKVWDDQWIFWVGPFIG  275 (304)
T ss_dssp             HHHCCHHHHHHTTHHHHHHHHH
T ss_pred             HHHccCCCcCceEEEeehHHHH
Confidence            9976556899999999999863
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 264
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-47
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 0.003
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 4e-40
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 8e-34
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 0.002
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 7e-31
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  156 bits (396), Expect = 1e-47
 Identities = 86/211 (40%), Positives = 121/211 (57%), Gaps = 7/211 (3%)

Query: 34  EELGKWSFYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGG 93
            E  K  F+RAV+AEF+A +LF+++++ + +G+      N  T        + ++ AFG 
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTG--AVQDNVKVSLAFGL 60

Query: 94  MIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKS 153
            I  L      ISG H+NPAVT GL L  ++S++RA++Y++AQC+GAI     +     S
Sbjct: 61  SIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS 120

Query: 154 YYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIG 213
             +    G N LA G N G GLG EIIGT  LV  V + TD +R      +    PL IG
Sbjct: 121 LPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIG 175

Query: 214 FAVFMVHLATIPITGTGINPARSFGAAVIYN 244
           F+V + HL  I  TG GINPARSFG++VI +
Sbjct: 176 FSVALGHLLAIDYTGCGINPARSFGSSVITH 206
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.38
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.3
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.29
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.16
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-49  Score=341.46  Aligned_cols=209  Identities=26%  Similarity=0.385  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHH
Q 024687           41 FYRAVIAEFIATLLFLYVTVLTVIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL  120 (264)
Q Consensus        41 ~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~l~~~i~~~~~iSGah~NPavTla~~~  120 (264)
                      +.|++++||+||++|+|++++++......+         ...+.+.+++++|+++++.+++++++||||+|||||+++++
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~---------~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i   72 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAG---------ASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWL   72 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccC---------CCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHH
Confidence            568999999999999999988776544332         23356788999999999999999999999999999999999


Q ss_pred             ccCCccchhhHHhhhhhhHHHHHHHHHHhhhhhhhhhcC-----------------CCccccCCCCcchhhHHHHHHHHH
Q 024687          121 GRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYG-----------------GGANELADGYNKGTGLGAEIIGTF  183 (264)
Q Consensus       121 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~f~~E~~~T~  183 (264)
                      .|+++|.+++.|+++|++|+++|+++++.++++.+.+..                 ...+.+.++.+..++|+.|+++|+
T Consensus        73 ~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf  152 (254)
T d1fx8a_          73 FACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITA  152 (254)
T ss_dssp             HSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCcHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999886553321                 113345677889999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCCCcccccchhHHHHhh----------CCCCCCCccE
Q 024687          184 VLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY----------NKEKAWDDQV  253 (264)
Q Consensus       184 iL~~~il~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~g~~tG~~~NPAr~~gp~i~~----------~~~~~w~~~w  253 (264)
                      +|+++++.+.|++|+.+.   +...|+.||+.+.+++++.++.||++||||||||||++.          .++.+|+|+|
T Consensus       153 ~lv~~il~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~w  229 (254)
T d1fx8a_         153 ILMGLILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFL  229 (254)
T ss_dssp             HHHHHHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTH
T ss_pred             HHHHHHHHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeee
Confidence            999999999988775433   357899999999999999999999999999999999985          1246899999


Q ss_pred             EEEeeccc
Q 024687          254 LQFFHYTI  261 (264)
Q Consensus       254 vywv~P~~  261 (264)
                      |||++|++
T Consensus       230 vy~vgP~~  237 (254)
T d1fx8a_         230 VPLFGPIV  237 (254)
T ss_dssp             HHHHTTHH
T ss_pred             hHhHHHHH
Confidence            99999986
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure