Citrus Sinensis ID: 024688

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQLQFLDIGHLEMNRIQTFSRA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEcccccHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEccccccEEEHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
maqptqpdpflevcrdsdAGAAFVLEskgewwhagfhlttaivgptiltlpyvfrglgwglgftCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMysdlypngslkLYEFIAMVTVVMIVLSqlptfhslrHINLVSLLLSLGYSFLVVGACinagfsknappkdyslessksariFSAFTSISIIAAIfgngilpeiqLQFLDIGHLEMNRIQTFSRA
Flexible Loop (DISEMBL)
maqptqpdpfleVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQLQFLDIGHLEMNRIQTFSRA
Low Complexity Region (SEG)
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKsarifsaftsisiiaaifGNGILPEIQLQFLDIGHLEMNRIQTFSRA
Disordered region (IsUnstruct)
**********LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS***************ARIFSAFTSISIIAAIFGNGILPEIQLQFLDIGHLEMNRI******
Disordered Region (DISOPRED)
*************************ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQLQFLDIGHLEMNRIQTFSRA
Disordered Region (DISEMBL)
********PFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQLQFLDIGHLEMNRIQTFSRA
Disordered Region (DISPRO)
*****************DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQLQFLDIGHLEMNRIQTFSRA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQLQFLDIGHLEMNRIQTFSRA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q8L4X4	452	Probable GABA transporter	yes	no	0.924	0.539	0.827	1e-117
F4HW02	451	GABA transporter 1 OS=Ara	no	no	0.859	0.503	0.497	1e-55
Q9SR44	441	Lysine histidine transpor	no	no	0.852	0.510	0.274	2e-20
Q9LRB5	441	Lysine histidine transpor	no	no	0.852	0.510	0.278	7e-20
Q9FKS8	446	Lysine histidine transpor	no	no	0.875	0.517	0.287	3e-19
Q9C9J0	448	Lysine histidine transpor	no	no	0.806	0.475	0.295	4e-18
Q9C733	453	Lysine histidine transpor	no	no	0.856	0.498	0.295	5e-18
O22719	451	Lysine histidine transpor	no	no	0.799	0.467	0.291	1e-16
Q9SJP9	436	Proline transporter 3 OS=	no	no	0.784	0.474	0.293	1e-14
Q9SS86	455	Lysine histidine transpor	no	no	0.806	0.468	0.270	2e-14

>sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana GN=At5g41800 PE=2 SV=1

 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 217/244 (88%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQ 244
           PEIQ
Sbjct: 241 PEIQ 244

May be involved in the transport of GABA.
Arabidopsis thaliana (taxid: 3702)

>sp|F4HW02|GAT1_ARATH GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1

 Score =  216 bits (550), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 151/227 (66%)

Query: 18  DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSY 77
           DAG+ FVL+SKG WWH GFHLTT+IV P +L+LPY F+ LGW  G +CL     VTFYSY
Sbjct: 19  DAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVTFYSY 78

Query: 78  YLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137
            L+S  L+H    G R++RFR++A  +L   W  Y+V  IQ A+  GV I   LL G+CL
Sbjct: 79  TLLSLTLEHHASLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLGGQCL 138

Query: 138 QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197
           + MY  + PNG +KL+EF+ +   +++VL+Q P+FHSLR+IN +SLLL L YS     A 
Sbjct: 139 KAMYLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASAAAAS 198

Query: 198 INAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQ 244
           I  G   NAP KDY++      R+F  F +++IIA  +GNGI+PEIQ
Sbjct: 199 IYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQ 245

High affinity gamma-aminobutyric acid (GABA) transporter probably involved in GABA uptake into cells. When expressed in a heterologous system (Xenopus oocytes), imports GABA, butylamine, beta- and L-Alanine, 5-aminovaleric acid, 6-aminocaproic acid and 8-aminocaprylic acid, but does not mediate the transport of proline or glycine betaine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           ++ D           +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +TF
Sbjct: 17  KNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITF 76

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G
Sbjct: 77  YTLWQMVQM--HEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGG 134

Query: 135 ECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
           + L+ ++  L  +  +++   +I +   +  VL+ LP F+S+  ++L + ++SL YS + 
Sbjct: 135 KSLKKIHDLLCTDCKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIA 194

Query: 194 VGACINAGFSKNAPPKDYSLE-SSKSARIFSAFTSISIIA-AIFGNGILPEIQ 244
               +  G   N    DYS   S+ S  +F+   ++  +A A  G+ ++ EIQ
Sbjct: 195 WATSVKKGVHPNV---DYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQ 244

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           ++ D           +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +T 
Sbjct: 17  KNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITL 76

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G
Sbjct: 77  YTLWQMVEM--HEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGG 134

Query: 135 ECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
             L+ ++  + P+   ++   +I +   V  V+S LP F+S+  I+L + ++SL YS + 
Sbjct: 135 ASLKKVHQLVCPDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIA 194

Query: 194 VGACINAGFSKNAPPKDYSLESSKSA-RIFSAFTSISIIA-AIFGNGILPEIQ 244
             A ++ G     P  DYS  +S    ++F+   ++  +A A  G+ ++ EIQ
Sbjct: 195 WAASVHKGVH---PDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQ 244

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 16/247 (6%)

Query: 6   QPDPFLEVCRDSDAGAAFVLES--KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           Q D  L   R  +      + S    +WW++ FH  TA+VG  +L LPY    LGWG G 
Sbjct: 11  QDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGI 70

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
             L +   +T Y+ + M ++  H    G+R  R+ EL     G     Y V+  Q  +  
Sbjct: 71  AVLVLSWVITLYTLWQMVEM--HEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query: 124 GVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179
           GV I  ++  G+ L    +++  D  P   +KL  FI +   V  VLS LP F+S+  ++
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVCDDCKP---IKLTYFIMIFASVHFVLSHLPNFNSISGVS 185

Query: 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSA-RIFSAFTSISIIA-AIFGN 237
           L + ++SL YS +   +  + G  ++     Y  ++  +A  +F+ F+ +  +A A  G+
Sbjct: 186 LAAAVMSLSYSTIAWASSASKGVQEDV---QYGYKAKTTAGTVFNFFSGLGDVAFAYAGH 242

Query: 238 GILPEIQ 244
            ++ EIQ
Sbjct: 243 NVVLEIQ 249

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 7/220 (3%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
           + +W+++ FH  TA+VG  +L LP+    LGWG G   + +   +TFYS + M ++  H 
Sbjct: 36  EAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQL--HE 93

Query: 88  EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN 147
              G+R  R+ EL  +  G    ++ V+  Q  +     I   +  G+ L+     L+PN
Sbjct: 94  AVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPN 153

Query: 148 -GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
              ++   +I     + +VLSQ P F+S++ ++L++ L+S  YS +   A I  G     
Sbjct: 154 LEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHR- 212

Query: 207 PPKDYSLESSKSAR-IFSAFTSISIIAAIF-GNGILPEIQ 244
            P  Y +     A  +F AF  I  IA  F G+ ++ EIQ
Sbjct: 213 -PSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQ 251

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 11  LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG 70
           LE  ++ D           +WW++ FH  TA+VG  +L LP+    LGWG G   L +  
Sbjct: 25  LERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSW 84

Query: 71  FVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAI 130
            +T Y+ + M ++  H    G+R  R+ EL     G     Y ++  Q  +  GV I  +
Sbjct: 85  IITLYTLWQMVEM--HEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYM 142

Query: 131 LLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS 186
           +  G+ L    +I   D  P   ++L  FI +      VLS LP F+S+  ++LV+ ++S
Sbjct: 143 VTGGQSLKKFHEIACQDCSP---IRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMS 199

Query: 187 LGYSFLVVGACINAGFSKNAPPKDYSLESSKSAR-IFSAFTSISIIA-AIFGNGILPEIQ 244
           L YS +   A    G  ++     Y  +S  +A  + S FT +  IA A  G+ ++ EIQ
Sbjct: 200 LSYSTIAWTATAAKGVQEDV---QYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQ 256

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 12/223 (5%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
              W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+++ M ++ +  
Sbjct: 35  NANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMF 94

Query: 88  EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSD 143
           E  G+R  R+ EL     G     Y V+ +Q  + T   I  ++  GE L    Q+   D
Sbjct: 95  E--GKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGD 152

Query: 144 LYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS 203
            Y    LK+  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G +
Sbjct: 153 -YECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVA 211

Query: 204 KNAPPKDYSLESSKSARIFSAFTSI--SIIAAIFGNGILPEIQ 244
            N    +Y  +   +  +  AF      +  A  G+ ++ EIQ
Sbjct: 212 NNV---EYGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQ 251

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJP9|PROT3_ARATH Proline transporter 3 OS=Arabidopsis thaliana GN=PROT3 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 18/225 (8%)

Query: 27  SKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLD 85
           S   W+ A F LTT+I    +L     V   LGW  G   L +   ++ Y+  L++K+  
Sbjct: 26  SSDSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKL-- 83

Query: 86  HCEKAGRRHIRFRELAADVLGSG-----WMFYFVIFIQTAINTGVGIGAILLAGECLQIM 140
             E  G+RHIR+R+LA  + G       W+  +V          +  G I+LAG  L+ +
Sbjct: 84  -HEFGGKRHIRYRDLAGFIYGRKAYCLTWVLQYVNLFM------INCGFIILAGSALKAV 136

Query: 141 YSDLYPNGSLKLYEFIAMVTVVMIVLS-QLPTFHSLRHINLVSLLLSLGYSFLVVGACIN 199
           Y     + ++KL  FIA+  ++  V +  +P   +L     VS +LSL Y  +VV   ++
Sbjct: 137 YVLFRDDHAMKLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIY--IVVAIVLS 194

Query: 200 AGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQ 244
                 AP +DY ++ S  +++F+   + + +  +F  G+LPEIQ
Sbjct: 195 VKDGVKAPSRDYEIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQ 239

Proline transporter that mediates proline and glycine betaine transport. When expressed in a heterologous system (yeast), imports L-proline, glycine betaine and GABA across the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
              W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+ + M ++ +  
Sbjct: 33  NANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMHEMF 92

Query: 88  EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN 147
           E  G+R  R+ EL     G     Y ++ +Q  +   V I  ++  G+ L+ ++     +
Sbjct: 93  E--GQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDLALGD 150

Query: 148 G----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS 203
           G     L++  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G +
Sbjct: 151 GDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKGAT 210

Query: 204 KNAPPKDYSLESSKSARIF-SAFTSISIIAAIFGNGILPEIQ 244
             +    Y   ++     F SA   ++   A  G+ ++ EIQ
Sbjct: 211 TGSVEYGYRKRTTSVPLAFLSALGEMAFAYA--GHNVVLEIQ 250

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
225426008	455	PREDICTED: lysine histidine transporter	0.924	0.536	0.868	1e-121
255537737	452	amino acid transporter, putative [Ricinu	0.875	0.511	0.904	1e-121
224058347	453	proline transporter [Populus trichocarpa	0.924	0.538	0.869	1e-120
297805462	452	hypothetical protein ARALYDRAFT_493805 [	0.924	0.539	0.831	1e-117
224072174	453	proline transporter [Populus trichocarpa	0.871	0.507	0.886	1e-116
18422139	452	Transmembrane amino acid transporter fam	0.924	0.539	0.827	1e-115
21554158	452	amino acid permease-like protein [Arabid	0.924	0.539	0.827	1e-115
363807418	445	uncharacterized protein LOC100815232 [Gl	0.897	0.532	0.819	1e-113
449464072	454	PREDICTED: probable GABA transporter 2-l	0.912	0.530	0.821	1e-108
449505054	454	PREDICTED: LOW QUALITY PROTEIN: probable	0.912	0.530	0.817	1e-107

>gi|225426008|ref|XP_002273161.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|297742313|emb|CBI34462.3| unnamed protein product [Vitis vinifera]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/244 (86%), Positives = 224/244 (91%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           +A+P   DPF E  R+ DAGA FVLESKG WWHAGFHLTTAIVGPTILTLPY FRGLGWG
Sbjct: 4   IAEPLHVDPFPEQNREEDAGAVFVLESKGTWWHAGFHLTTAIVGPTILTLPYAFRGLGWG 63

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVI IQ A
Sbjct: 64  LGFLCLTTMGLVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIVIQAA 123

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTGVGIGAILL GECLQIMYSDL+PNGSLKLYEFIAMVT VMI+LSQLPTFHSLRHINL
Sbjct: 124 INTGVGIGAILLGGECLQIMYSDLFPNGSLKLYEFIAMVTAVMIILSQLPTFHSLRHINL 183

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
           VSL LSLGY+FLVVGACI+AG SK+ PP+DYSLE+S+SAR+FSAFTSISIIAAIFGNGIL
Sbjct: 184 VSLFLSLGYTFLVVGACIHAGTSKHPPPRDYSLETSESARVFSAFTSISIIAAIFGNGIL 243

Query: 241 PEIQ 244
           PEIQ
Sbjct: 244 PEIQ 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537737|ref|XP_002509935.1| amino acid transporter, putative [Ricinus communis] gi|223549834|gb|EEF51322.1| amino acid transporter, putative [Ricinus communis]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/231 (90%), Positives = 223/231 (96%)

Query: 14  CRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT 73
           CR+ DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF CLTVMG VT
Sbjct: 14  CREVDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTVMGVVT 73

Query: 74  FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA 133
           FYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA
Sbjct: 74  FYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA 133

Query: 134 GECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
           GECLQIMYS++YP+G LKL+EFIAMVT VM+VLSQLPTFHSLRH+N+ SLLLSLGY+FLV
Sbjct: 134 GECLQIMYSNIYPSGPLKLFEFIAMVTAVMVVLSQLPTFHSLRHLNMASLLLSLGYTFLV 193

Query: 194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQ 244
           VGACI+AG SKNAPP+DYSLESS+SAR+FSAFTSISIIAAIFGNGILPEIQ
Sbjct: 194 VGACISAGLSKNAPPRDYSLESSESARVFSAFTSISIIAAIFGNGILPEIQ 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058347|ref|XP_002299485.1| proline transporter [Populus trichocarpa] gi|222846743|gb|EEE84290.1| proline transporter [Populus trichocarpa]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/245 (86%), Positives = 225/245 (91%), Gaps = 1/245 (0%)

Query: 1   MAQPTQPDPFL-EVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGW 59
           MA P + DPFL +  R+ DAGA FVLESKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW
Sbjct: 1   MAPPPKSDPFLADSQREVDAGAVFVLESKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGW 60

Query: 60  GLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQT 119
           GLGF CLTVMG VTFY+YYLMSKVLD+CE+ GRRHIRFRELAADVLGSGWMFYFVI IQT
Sbjct: 61  GLGFFCLTVMGMVTFYAYYLMSKVLDYCERDGRRHIRFRELAADVLGSGWMFYFVIVIQT 120

Query: 120 AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179
           AINTGVGIGAILLAGECLQIMYS L P+G LKLYEFIAMVTVVMIVLSQ PTFHSLRHIN
Sbjct: 121 AINTGVGIGAILLAGECLQIMYSSLSPDGPLKLYEFIAMVTVVMIVLSQFPTFHSLRHIN 180

Query: 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGI 239
           L SL LSLGYSF+VVGACI+AG SKNAPP+DYSLESS+SAR+FSAFTSISIIAAIFGNGI
Sbjct: 181 LASLFLSLGYSFIVVGACIHAGLSKNAPPRDYSLESSESARVFSAFTSISIIAAIFGNGI 240

Query: 240 LPEIQ 244
           LPEIQ
Sbjct: 241 LPEIQ 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805462|ref|XP_002870615.1| hypothetical protein ARALYDRAFT_493805 [Arabidopsis lyrata subsp. lyrata] gi|297316451|gb|EFH46874.1| hypothetical protein ARALYDRAFT_493805 [Arabidopsis lyrata subsp. lyrata]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/244 (83%), Positives = 217/244 (88%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFSVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSGWMFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGWMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS LYP G+LKLYEFIAMVT VM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLYPQGTLKLYEFIAMVTAVMMVLSQLPSFHSLRHINF 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SL+LSLGY+FLVVGACIN G SKNAP +DYSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLILSLGYTFLVVGACINLGLSKNAPKRDYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQ 244
           PEIQ
Sbjct: 241 PEIQ 244

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072174|ref|XP_002303637.1| proline transporter [Populus trichocarpa] gi|222841069|gb|EEE78616.1| proline transporter [Populus trichocarpa]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/230 (88%), Positives = 215/230 (93%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           R+ DAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPYVF+GLGW LGF CLTVMG VTF
Sbjct: 16  REVDAGAVFVLQSKGEWWHAGFHLTTAIVGPTILTLPYVFKGLGWALGFFCLTVMGMVTF 75

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+YYLMSKVLD+CEK GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG
Sbjct: 76  YAYYLMSKVLDYCEKDGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 135

Query: 135 ECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV 194
           ECLQIMYS L P+G LKLYEFIAMVTVVMIVLSQLPTFHSLRHINL SL LSLGY+F+VV
Sbjct: 136 ECLQIMYSSLSPDGPLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLASLFLSLGYTFIVV 195

Query: 195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQ 244
           GAC+ AG SKNAP +DYSLESS SAR+FSAFTSISIIAAIFGNGILPEIQ
Sbjct: 196 GACVQAGLSKNAPSRDYSLESSGSARVFSAFTSISIIAAIFGNGILPEIQ 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422139|ref|NP_568597.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|75245603|sp|Q8L4X4.1|GAT2_ARATH RecName: Full=Probable GABA transporter 2 gi|20466438|gb|AAM20536.1| amino acid permease-like protein [Arabidopsis thaliana] gi|22136372|gb|AAM91264.1| amino acid permease-like protein [Arabidopsis thaliana] gi|332007347|gb|AED94730.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 217/244 (88%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQ 244
           PEIQ
Sbjct: 241 PEIQ 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554158|gb|AAM63237.1| amino acid permease-like protein [Arabidopsis thaliana]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 217/244 (88%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFFCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINF 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQ 244
           PEIQ
Sbjct: 241 PEIQ 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807418|ref|NP_001242384.1| uncharacterized protein LOC100815232 [Glycine max] gi|255640094|gb|ACU20338.1| unknown [Glycine max]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/244 (81%), Positives = 219/244 (89%), Gaps = 7/244 (2%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           MA+P + D       + D GAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWG
Sbjct: 1   MAEPPKGD-------EEDGGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWG 53

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLTVMG VTFYSY+LMSKVLDHCEK+GRRHIRFRELAADVLGSGWMFYFVIFIQTA
Sbjct: 54  LGFMCLTVMGIVTFYSYFLMSKVLDHCEKSGRRHIRFRELAADVLGSGWMFYFVIFIQTA 113

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTGVG+GAILLAGECLQIMYS++ P+G LKLY FIAMVTV+MIVLSQLP+FHSLRHINL
Sbjct: 114 INTGVGVGAILLAGECLQIMYSNISPHGPLKLYHFIAMVTVIMIVLSQLPSFHSLRHINL 173

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLL +LGY+ LVVGACI+AG S+NAPP+ YSLE  KSAR FSAFTS+SI+AAIFGNGIL
Sbjct: 174 CSLLFALGYTILVVGACIHAGTSENAPPRVYSLEPKKSARAFSAFTSMSILAAIFGNGIL 233

Query: 241 PEIQ 244
           PEIQ
Sbjct: 234 PEIQ 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464072|ref|XP_004149753.1| PREDICTED: probable GABA transporter 2-like [Cucumis sativus]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/241 (82%), Positives = 216/241 (89%)

Query: 4   PTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           P   D F +  R +DAGAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF
Sbjct: 6   PITHDLFTDTERQNDAGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGF 65

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
            CLT+M  VTFYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT
Sbjct: 66  FCLTIMAVVTFYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 125

Query: 124 GVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183
           GVGIGAILLAG+CL+I+YS L PNGS+KLYEFIA+VT VMI+LSQLPTFHSLRH+NL SL
Sbjct: 126 GVGIGAILLAGQCLEILYSSLNPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVNLGSL 185

Query: 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEI 243
           LLSLGY+FLVV ACI A  SK AP ++Y+LESS  +R FSAFTSISI+AAIFGNGILPEI
Sbjct: 186 LLSLGYAFLVVAACIIAARSKEAPTREYTLESSPKSRTFSAFTSISILAAIFGNGILPEI 245

Query: 244 Q 244
           Q
Sbjct: 246 Q 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505054|ref|XP_004162363.1| PREDICTED: LOW QUALITY PROTEIN: probable GABA transporter 2-like [Cucumis sativus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/241 (81%), Positives = 215/241 (89%)

Query: 4   PTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           P   D F +  R +DAGAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF
Sbjct: 6   PITHDLFTDTERQNDAGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGF 65

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
            CLT+M  VTFYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWM YFVIFIQTAINT
Sbjct: 66  FCLTIMAVVTFYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMXYFVIFIQTAINT 125

Query: 124 GVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183
           GVGIGAILLAG+CL+I+YS L PNGS+KLYEFIA+VT VMI+LSQLPTFHSLRH+NL SL
Sbjct: 126 GVGIGAILLAGQCLEILYSSLNPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVNLGSL 185

Query: 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEI 243
           LLSLGY+FLVV ACI A  SK AP ++Y+LESS  +R FSAFTSISI+AAIFGNGILPEI
Sbjct: 186 LLSLGYAFLVVAACIIAARSKEAPTREYTLESSPKSRTFSAFTSISILAAIFGNGILPEI 245

Query: 244 Q 244
           Q
Sbjct: 246 Q 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2152995	452	AT5G41800 [Arabidopsis thalian	0.924	0.539	0.766	1.7e-98
TAIR|locus:2199978	451	AT1G08230 [Arabidopsis thalian	0.859	0.503	0.471	2.1e-52
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.685	0.410	0.329	2e-21
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.689	0.412	0.292	1.2e-19
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.689	0.412	0.303	2.6e-19
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.791	0.468	0.278	3.5e-19
TAIR|locus:2008435	451	AT1G61270 [Arabidopsis thalian	0.795	0.465	0.284	7.8e-19
TAIR|locus:2008154	453	AT1G48640 [Arabidopsis thalian	0.875	0.509	0.259	1.7e-17
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.651	0.383	0.291	2.6e-16
TAIR|locus:2044835	436	ProT3 "proline transporter 3"	0.799	0.483	0.294	1.1e-15

TAIR|locus:2152995 AT5G41800 [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 187/244 (76%), Positives = 200/244 (81%)

Query:     1 MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
             M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct:     1 MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query:    61 LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
             LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct:    61 LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query:   121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
             INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct:   121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query:   181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGIL 240
              SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S                   GNGIL
Sbjct:   181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query:   241 PEIQ 244
             PEIQ
Sbjct:   241 PEIQ 244

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 107/227 (47%), Positives = 140/227 (61%)

Query:    18 DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSY 77
             DAG+ FVL+SKG WWH GFHLTT+IV P +L+LPY F+ LGW  G +CL     VTFYSY
Sbjct:    19 DAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVTFYSY 78

Query:    78 YLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137
              L+S  L+H    G R++RFR++A  +L   W  Y+V  IQ A+  GV I   LL G+CL
Sbjct:    79 TLLSLTLEHHASLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLGGQCL 138

Query:   138 QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197
             + MY  + PNG +KL+EF+ +   +++VL+Q P+FHSLR+IN +SLLL L YS     A 
Sbjct:   139 KAMYLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASAAAAS 198

Query:   198 INAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQ 244
             I  G   NAP KDY++                      GNGI+PEIQ
Sbjct:   199 IYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQ 245

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IGI

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 255 (94.8 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 63/191 (32%), Positives = 101/191 (52%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G   L +   +T Y+ + M ++  H   
Sbjct:    30 KWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVLILSWIITLYTLWQMVEM--HEMV 87

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG- 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G+ L+  + D+   G 
Sbjct:    88 PGKRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLK-KFHDVLCEGH 146

Query:   149 ---SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 205
                ++KL  FI +   V  VLSQLP F+S+  ++L + ++SL YS +  GA ++ G  K 
Sbjct:   147 GCKNIKLTYFIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGASVDKG--KV 204

Query:   206 APPKDYSLESS 216
             A   DY L ++
Sbjct:   205 ADV-DYHLRAT 214

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 55/188 (29%), Positives = 97/188 (51%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +TFY+ + M ++  H   
Sbjct:    32 KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITFYTLWQMVQM--HEMV 89

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-G 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G+ L+ ++  L  +  
Sbjct:    90 PGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCK 149

Query:   149 SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPP 208
             +++   +I +   +  VL+ LP F+S+  ++L + ++SL YS +     +  G   N   
Sbjct:   150 NIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNV-- 207

Query:   209 KDYSLESS 216
              DYS  +S
Sbjct:   208 -DYSSRAS 214

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 2.6e-19, P = 2.6e-19
 Identities = 57/188 (30%), Positives = 97/188 (51%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +T Y+ + M ++  H   
Sbjct:    32 KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQMVEM--HEIV 89

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-G 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G  L+ ++  + P+  
Sbjct:    90 PGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCK 149

Query:   149 SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPP 208
              ++   +I +   V  V+S LP F+S+  I+L + ++SL YS +   A ++ G     P 
Sbjct:   150 EIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVH---PD 206

Query:   209 KDYSLESS 216
              DYS  +S
Sbjct:   207 VDYSPRAS 214

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 61/219 (27%), Positives = 102/219 (46%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L LPY    LGWG G   L +   +T Y+ + M ++  H   
Sbjct:    37 KWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEM--HEMV 94

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLY 145
              G+R  R+ EL     G     Y V+  Q  +  GV I  ++  G+ L    +++  D  
Sbjct:    95 PGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCK 154

Query:   146 PNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 205
             P   +KL  FI +   V  VLS LP F+S+  ++L + ++SL YS +   +  + G  ++
Sbjct:   155 P---IKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQED 211

Query:   206 APPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQ 244
                  Y  +++                   G+ ++ EIQ
Sbjct:   212 VQ-YGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQ 249

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 7.8e-19, P = 7.8e-19
 Identities = 62/218 (28%), Positives = 100/218 (45%)

Query:    31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA 90
             W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+++ M ++ +  E  
Sbjct:    38 WYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFE-- 95

Query:    91 GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYP 146
             G+R  R+ EL     G     Y V+ +Q  + T   I  ++  GE L    Q+   D Y 
Sbjct:    96 GKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGD-YE 154

Query:   147 NGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
                LK+  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G + N 
Sbjct:   155 CRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNV 214

Query:   207 PPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQ 244
                 Y   ++                   G+ ++ EIQ
Sbjct:   215 E-YGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQ 251

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 61/235 (25%), Positives = 104/235 (44%)

Query:    11 LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG 70
             LE  ++ D           +WW++ FH  TA+VG  +L LP+    LGWG G   L +  
Sbjct:    25 LERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSW 84

Query:    71 FVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAI 130
              +T Y+ + M ++  H    G+R  R+ EL     G     Y ++  Q  +  GV I  +
Sbjct:    85 IITLYTLWQMVEM--HEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYM 142

Query:   131 LLAGECLQIMYSDLYPNGS-LKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY 189
             +  G+ L+  +     + S ++L  FI +      VLS LP F+S+  ++LV+ ++SL Y
Sbjct:   143 VTGGQSLKKFHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSY 202

Query:   190 SFLVVGACINAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQ 244
             S +   A    G  ++     Y   ++                   G+ ++ EIQ
Sbjct:   203 STIAWTATAAKGVQEDVQ-YGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQ 256

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 51/175 (29%), Positives = 90/175 (51%)

Query:    28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
             + +W+++ FH  TA+VG  +L LP+    LGWG G   + +   +TFYS + M ++  H 
Sbjct:    36 EAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQL--HE 93

Query:    88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN 147
                G+R  R+ EL  +  G    ++ V+  Q  +     I   +  G+ L+     L+PN
Sbjct:    94 AVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPN 153

Query:   148 -GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAG 201
                ++   +I     + +VLSQ P F+S++ ++L++ L+S  YS +   A I  G
Sbjct:   154 LEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKG 208

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2044835 ProT3 "proline transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 65/221 (29%), Positives = 104/221 (47%)

Query:    27 SKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLD 85
             S   W+ A F LTT+I    +L     V   LGW  G   L +   ++ Y+  L++K+  
Sbjct:    26 SSDSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKL-- 83

Query:    86 HCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTG-VGIGAILLAGECLQIMYSDL 144
             H E  G+RHIR+R+LA  + G     Y + ++   +N   +  G I+LAG  L+ +Y   
Sbjct:    84 H-EFGGKRHIRYRDLAGFIYGR--KAYCLTWVLQYVNLFMINCGFIILAGSALKAVYVLF 140

Query:   145 YPNGSLKLYEFIAMVTVVMIVLS-QLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS 203
               + ++KL  FIA+  ++  V +  +P   +L     VS +LSL Y  +VV   ++    
Sbjct:   141 RDDHAMKLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIY--IVVAIVLSVKDG 198

Query:   204 KNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQ 244
               AP +DY ++ S                     G+LPEIQ
Sbjct:   199 VKAPSRDYEIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQ 239

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI;RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L4X4	GAT2_ARATH	No assigned EC number	0.8278	0.9242	0.5398	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002452001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (455 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	2e-27

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  108 bits (272), Expect = 2e-27
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 8/220 (3%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH- 86
               W A F+L  AI+G  +L+LPY F+ LGW  G   L ++G ++ Y+ +L+ +   + 
Sbjct: 2   TISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYV 61

Query: 87  CEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP 146
            +  G+R   + +L   + G       ++F       GV I  ++ AG+ L  ++   + 
Sbjct: 62  DKVKGKRRKSYGDLGYRLFG-PKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 147 NGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
              + L  FI +  ++ I LS +P   +L  ++LV+ + SL Y  ++V +    G     
Sbjct: 121 TCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVL--- 176

Query: 207 PPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQ 244
             +    L +  + ++   F +I II   F G+ +L  IQ
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQ 216

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	99.98
PLN03074	473	auxin influx permease; Provisional	99.97
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.96
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.95
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.94
PRK10483	414	tryptophan permease; Provisional	99.79
PRK09664	415	tryptophan permease TnaB; Provisional	99.78
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.75
PRK15132	403	tyrosine transporter TyrP; Provisional	99.75
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.73
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.61
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.53
PRK10655	438	potE putrescine transporter; Provisional	99.11
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.09
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.04
PRK11021	410	putative transporter; Provisional	99.03
TIGR00909	429	2A0306 amino acid transporter.	99.03
PRK10644	445	arginine:agmatin antiporter; Provisional	99.02
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.02
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.97
PRK11387	471	S-methylmethionine transporter; Provisional	98.96
PRK10238	456	aromatic amino acid transporter; Provisional	98.91
PRK10249	458	phenylalanine transporter; Provisional	98.91
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.9
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.84
PRK10746	461	putative transport protein YifK; Provisional	98.83
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.83
KOG3832	319	consensus Predicted amino acid transporter [Genera	98.83
KOG1287	479	consensus Amino acid transporters [Amino acid tran	98.82
PRK10836	489	lysine transporter; Provisional	98.82
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.8
TIGR00913	478	2A0310 amino acid permease (yeast).	98.79
PRK15049	499	L-asparagine permease; Provisional	98.76
PRK10580	457	proY putative proline-specific permease; Provision	98.74
TIGR00911	501	2A0308 L-type amino acid transporter.	98.7
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.7
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.69
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.62
TIGR00930	953	2a30 K-Cl cotransporter.	98.49
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.44
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.44
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.36
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.29
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.1
PRK15238	496	inner membrane transporter YjeM; Provisional	98.01
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	97.96
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.91
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.88
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	97.73
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.47
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	97.45
COG3949	349	Uncharacterized membrane protein [Function unknown	97.39
PRK11375	484	allantoin permease; Provisional	97.3
KOG1286	554	consensus Amino acid transporters [Amino acid tran	97.18
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	97.13
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	96.97
PRK09442	483	panF sodium/panthothenate symporter; Provisional	96.93
PRK15015	701	carbon starvation protein A; Provisional	96.76
COG1966	575	CstA Carbon starvation protein, predicted membrane	96.62
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	96.41
TIGR00813	407	sss transporter, SSS family. have different number	96.38
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	95.95
PRK11017	404	codB cytosine permease; Provisional	95.89
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	95.78
PRK12488	549	acetate permease; Provisional	95.46
PRK09395	551	actP acetate permease; Provisional	95.44
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	95.03
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	94.91
KOG1289	550	consensus Amino acid transporters [Amino acid tran	94.68
COG1457	442	CodB Purine-cytosine permease and related proteins	94.32
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	93.65
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	92.53
PRK15419	502	proline:sodium symporter PutP; Provisional	91.99
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	91.94
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	91.16
PRK15433	439	branched-chain amino acid transport system 2 carri	88.97

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=9.6e-39  Score=291.95  Aligned_cols=236  Identities=29%  Similarity=0.519  Sum_probs=204.9

Q ss_pred             ccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhc-cccCcccccHHH
Q 024688           21 AAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRE   99 (264)
Q Consensus        21 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~-~~~~~~~~sy~~   99 (264)
                      +....+|++||++|++|.++.++|.|+|+||||++++||+.|+++++++++++.||.++|.+|.+.+ +..++|+.+|.|
T Consensus        30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~d  109 (437)
T KOG1303|consen   30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPD  109 (437)
T ss_pred             CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHH
Confidence            3334588899999999999999999999999999999999999999999999999999999999885 345567789999


Q ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCC-CchhhHHHHHHHHHHHHHhcCCCcchhhHH
Q 024688          100 LAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SLKLYEFIAMVTVVMIVLSQLPTFHSLRHI  178 (264)
Q Consensus       100 l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~i~~pls~~r~l~~l~~~  178 (264)
                      +++++||++ +|+++.+++++.++|.|+.|++..+|++..+++.++.|. ..+...|+++++++.+|++++||++.+++.
T Consensus       110 l~~~afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~  188 (437)
T KOG1303|consen  110 LGQAAFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYL  188 (437)
T ss_pred             HHHHHhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHH
Confidence            999999996 799999999999999999999999999999999877654 555677899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccccee
Q 024688          179 NLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNR  257 (264)
Q Consensus       179 S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~  257 (264)
                      |..+.++++.+..+.++.++.++.+.+.+..++...++..    ..++++|+++|+| +|.++||||++||+|++  |+|
T Consensus       189 S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~----~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~--f~~  262 (437)
T KOG1303|consen  189 SLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIP----TVFTALGIIAFAYGGHAVLPEIQHTMKSPPK--FKK  262 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCc----chhhhhhheeeeecCCeeeeehHhhcCCchh--hhh
Confidence            9999999999999888888888765433333333222111    1189999999999 99999999999999985  999


Q ss_pred             eeeccc
Q 024688          258 IQTFSR  263 (264)
Q Consensus       258 ~~~~~~  263 (264)
                      +..+++
T Consensus       263 ~~lis~  268 (437)
T KOG1303|consen  263 ALLISY  268 (437)
T ss_pred             HHHHHH
Confidence            887664

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=3.1e-38  Score=294.22  Aligned_cols=233  Identities=15%  Similarity=0.175  Sum_probs=183.8

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (264)
                      ..++++..++++|++|+++|+|+|+||+||+++||++|+++++++++++.||.++|.+++++   .+.  .||+|+++++
T Consensus        56 ~~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~--~sY~~la~~~  130 (467)
T PTZ00206         56 IIPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNI--RTYEGVARVL  130 (467)
T ss_pred             ccCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCC--CCHHHHHHHH
Confidence            35667799999999999999999999999999999999999999999999999999999886   443  4999999999


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccC-CC----CchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP-NG----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (264)
Q Consensus       105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~-~~----~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S  179 (264)
                      ||| +|++++++++.+.++|+|++|+++++|.++.+++.... +.    ..++..+.+++.++++|++++|++++++++|
T Consensus       131 ~G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S  209 (467)
T PTZ00206        131 LGP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVS  209 (467)
T ss_pred             hCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHH
Confidence            999 69999999999999999999999999999988764321 10    1122334466778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCc---h-hhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688          180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSK---S-ARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE  254 (264)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~  254 (264)
                      .+++++.++.++.+++.++.++.+++.++.+.......   . ....+.+.++|+++||| ||.|+|++++|||||+++|
T Consensus       210 ~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~  289 (467)
T PTZ00206        210 TIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGK  289 (467)
T ss_pred             HHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhH
Confidence            99998666555555555554433222111111100000   0 01125789999999999 9999999999999999999


Q ss_pred             ceeeeeccc
Q 024688          255 MNRIQTFSR  263 (264)
Q Consensus       255 m~~~~~~~~  263 (264)
                      |+++...++
T Consensus       290 ~~~v~~~s~  298 (467)
T PTZ00206        290 FVLASTIAM  298 (467)
T ss_pred             HHHHHHHHH
Confidence            998876554

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=2.2e-36  Score=277.06  Aligned_cols=232  Identities=24%  Similarity=0.436  Sum_probs=190.1

Q ss_pred             cCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhC
Q 024688           27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG  106 (264)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G  106 (264)
                      ||+|++++++|++|+++|+|+|+||++++++||++|++++++++.++.||.++|.|++++.+ .+.+..+|+|++++.+|
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~~~~~~y~~l~~~~~G   79 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NGTGRRSYGDLARRAFG   79 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-ccccccccccccccccc
Confidence            67899999999999999999999999999999999999999999999999999999988632 12345699999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 024688          107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS  186 (264)
Q Consensus       107 ~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~  186 (264)
                      ++ +++++++++.+.++|.|++|+++.+|.++++.....++...++..|.++..++++|++++|++++++++|.+++++.
T Consensus        80 ~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~  158 (409)
T PF01490_consen   80 PK-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI  158 (409)
T ss_pred             cc-ccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence            95 89999999999999999999999999999998765444456777778888999999999999999999999999866


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCccccC-CchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccc-ccceeeeeccc
Q 024688          187 LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGH-LEMNRIQTFSR  263 (264)
Q Consensus       187 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~-~~m~~~~~~~~  263 (264)
                      +.++++.+.........+   +.+.+... ++..++++++.++|+++||| ||.++|++++|||+|++ +|++|+...++
T Consensus       159 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~  235 (409)
T PF01490_consen  159 FYFIVIVVIYIISYGPGE---PSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISM  235 (409)
T ss_pred             ceeeeeecceeeeeeccc---ccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehh
Confidence            543222222222222111   11111111 12334568999999999999 99999999999999998 78889888775

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.98  E-value=7.5e-32  Score=243.76  Aligned_cols=217  Identities=16%  Similarity=0.213  Sum_probs=181.3

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhc-cccCcccccHHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAADV  104 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~-~~~~~~~~sy~~l~~~~  104 (264)
                      ++..|..++..|+.|.++|+|+|+||+||+++||+.|.+..++++++++|+.+.+++|.++. .+.+....+|.+.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            44568999999999999999999999999999999999999999999999999999999884 22333457999998765


Q ss_pred             h----------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcch
Q 024688          105 L----------GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS  174 (264)
Q Consensus       105 ~----------G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~  174 (264)
                      +          |+ ++|.++++++++.++|.|++|++++++.++++.+... +...+.+.|+.+..++.+|++++||++.
T Consensus       124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~-~~~~s~~~~i~~~~~~~lll~~Ir~Lk~  201 (449)
T KOG1304|consen  124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS-PGVLSVRLYILIQLPPLLLLNLIRNLKI  201 (449)
T ss_pred             HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC-CCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4          56 7999999999999999999999999999999998322 3457788889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccc
Q 024688          175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGH  252 (264)
Q Consensus       175 l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~  252 (264)
                      |+.+|++++++.++...++....+.+.+    +..+.+...    ++.++...+|+.+||| +++++.|++++||+|++
T Consensus       202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~----~~~~~~~~~----~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~  272 (449)
T KOG1304|consen  202 LSPFSLFANVFILVGLAIIMYYLVQDLP----PTSDLPAVT----GWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK  272 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccC----Ccccccccc----chhhhHHHHHHHHHHhccceEEEehhhcccChhh
Confidence            9999999999777666655555444432    112222221    1337899999999999 99999999999999974

>PLN03074 auxin influx permease; Provisional

Probab=99.97  E-value=5.8e-29  Score=231.58  Aligned_cols=215  Identities=19%  Similarity=0.265  Sum_probs=169.7

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhc----cccCc--c--ccc
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC----EKAGR--R--HIR   96 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~----~~~~~--~--~~s   96 (264)
                      .+++++..++.+|+++..+|.|+|+||+||+++||++|++.++++++++.||.++|.+++.++    +.++.  +  ..+
T Consensus        42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~  121 (473)
T PLN03074         42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ  121 (473)
T ss_pred             ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence            466788999999999999999999999999999999999999999999999999999875442    11111  1  137


Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhh
Q 024688           97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR  176 (264)
Q Consensus        97 y~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~  176 (264)
                      |.|+++..+|| +++.+..+...+++++.|+.|++..++.+..+      +...+.+.|++++.++.+|++++|++++++
T Consensus       122 ~~e~~~~~~G~-~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l------~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~  194 (473)
T PLN03074        122 WFEVLDGLLGP-YWKNVGLAFNCTFLLFGSVIQLIACASNIYYI------NDNLDKRTWTYIFGACCATTVFIPSFHNYR  194 (473)
T ss_pred             HHHHHHHhcCh-hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh------CCCcCCCeEEeehHHHHHHHHHccCHHHHH
Confidence            89999999999 47799999999999999999999888776654      123455667788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccc
Q 024688          177 HINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHL  253 (264)
Q Consensus       177 ~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~  253 (264)
                      ++|.+|+.+++++.+.+++..+.++.+   +..+.+    ...+....+.++++++|+| +|..+|+|++|||||++.
T Consensus       195 ~~S~ig~~~tl~~av~i~i~~i~~~~~---~~~~~~----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F  265 (473)
T PLN03074        195 IWSFLGLLMTTYTAWYMTIAALSHGQV---EGVKHS----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF  265 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCC----CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcc
Confidence            999999987666544444444433321   111111    1123446788899999999 999999999999999753

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.96  E-value=2e-30  Score=236.03  Aligned_cols=226  Identities=21%  Similarity=0.320  Sum_probs=184.2

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      +++.|..++++|+.|+++|+|+|++|+||++.|++.|+++++++++++.+|.+++.++.++   .+.+  +|+++++..+
T Consensus         3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~---~~~~--ty~~l~~~~~   77 (411)
T KOG1305|consen    3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK---SGER--TYSSLGDLIF   77 (411)
T ss_pred             CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh---cCCC--CHHHHHHHHc
Confidence            4566899999999999999999999999999999999999999999999999999999997   5555  9999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc-cCCC-C---chhhH-HHHHHHHHHHHHhcCCCcchhhHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL-YPNG-S---LKLYE-FIAMVTVVMIVLSQLPTFHSLRHIN  179 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~-~~~~-~---~~~~~-~~~i~~~i~~pls~~r~l~~l~~~S  179 (264)
                      |+ .|+....+++.....| |++|+++++|.++.+.... .+++ .   .++.. ++++...+++||++.|++++++++|
T Consensus        78 g~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS  155 (411)
T KOG1305|consen   78 GK-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTS  155 (411)
T ss_pred             CC-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHH
Confidence            99 4877777888877777 8999999999999765442 1111 1   23333 4677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceee
Q 024688          180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRI  258 (264)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~  258 (264)
                      .+++.+.+.+++++++..+....  ..++..+..  ++...+++.+.++|+++||| ||.|..++++|||||+.++|+++
T Consensus       156 ~~s~~~~~~fv~~vv~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v  231 (411)
T KOG1305|consen  156 ALSLASVVYFVVLVVYKYFQGPC--ALGRLSYLV--PNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV  231 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc--ccCCccccc--CCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence            99999888777777776665332  111112222  12222357999999999999 99999999999999999999998


Q ss_pred             eecc
Q 024688          259 QTFS  262 (264)
Q Consensus       259 ~~~~  262 (264)
                      .+.+
T Consensus       232 ~~~~  235 (411)
T KOG1305|consen  232 SNIA  235 (411)
T ss_pred             HHHH
Confidence            8765

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.95  E-value=1.4e-26  Score=212.69  Aligned_cols=228  Identities=18%  Similarity=0.144  Sum_probs=183.6

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (264)
                      .+.+.+..++++++.++++|+|+|+||++++..|+.++++++++.+..+++|.+++.|+..+.+   .++.+|.+++++.
T Consensus         5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~---~~~~~~~~~~~~~   81 (415)
T COG0814           5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSP---NGKASITSLVEDY   81 (415)
T ss_pred             ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcccHHHHHHHH
Confidence            3567789999999999999999999999999999999999999999999999999999999842   2224999999999


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 024688          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (264)
Q Consensus       105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~  184 (264)
                      +||+ ++++.++++.+.+++.+.+|.+..+|.+++.+......++..+..+.+++.+++.++++.++...++..|.+...
T Consensus        82 ~G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~  160 (415)
T COG0814          82 LGKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG  160 (415)
T ss_pred             hCcc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence            9996 779999999999999999999999999999987532122256666778888888999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCccccCCc-hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       185 ~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      .....++...+.....    +  .......... ...+..+..++|++.||| ||+|+|++++|||++++++.+|+.+.+
T Consensus       161 ~v~~~~~l~~~~~~~~----~--~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~  234 (415)
T COG0814         161 KVIYLVLLVVYLIPHW----N--PANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIG  234 (415)
T ss_pred             HHHHHHHHHHHHhccc----C--HHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHH
Confidence            6655444433322111    1  0011111011 133447899999999999 999999999999999887788876544

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.94  E-value=2.5e-27  Score=204.79  Aligned_cols=219  Identities=16%  Similarity=0.200  Sum_probs=186.7

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCc---ccccHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGR---RHIRFRELAA  102 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~---~~~sy~~l~~  102 (264)
                      +.+.+-++|.+|..|.+-|.-|++||+|..+.|| +++..|+.++.+|+||+.+|++|..+..+.|.   .+.||.+++.
T Consensus       114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~  192 (524)
T KOG4303|consen  114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD  192 (524)
T ss_pred             CCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence            4567899999999999999999999999999998 89999999999999999999999887433332   2579999999


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (264)
Q Consensus       103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~  182 (264)
                      ..++++.|.+.+.+.+.+.+..+|+.|++..+|.+...++.    .+....-|+++....++|.+++|+++..+.+|+.+
T Consensus       193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~----~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c  268 (524)
T KOG4303|consen  193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG----LSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC  268 (524)
T ss_pred             HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC----CCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence            99999999899999999999999999999999999887753    35667778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM  255 (264)
Q Consensus       183 ~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m  255 (264)
                      .++-++.-.+++.++....-++.+..+++++.      ...++.++|++.|+| .|..+|++...|++|++.++
T Consensus       269 t~sH~viN~i~v~YCLs~~~dW~wskv~Fsid------i~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~  336 (524)
T KOG4303|consen  269 TISHLVINLIMVLYCLSFVSDWSWSKVTFSID------INTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNV  336 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccceeEEEEEE------cccCceEEEEEEEeeeceeeccccccccCChhHhee
Confidence            99888887788888776654333333333321      125678999999999 99999999999999997653

>PRK10483 tryptophan permease; Provisional

Probab=99.79  E-value=7.8e-18  Score=153.42  Aligned_cols=222  Identities=12%  Similarity=0.127  Sum_probs=156.5

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      +++++.+++++.+..+.+|+|+|+||.+.+++|+++++++++++++++.||..++.|+..+.+    +..++..++|+.+
T Consensus         8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~----~g~~~~tma~~~L   83 (414)
T PRK10483          8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR----IGSSFDTITKDLL   83 (414)
T ss_pred             cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHc
Confidence            567789999999999999999999999999999999999999999999999999999987632    2459999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcC--CCcchhhHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSL  183 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~--r~l~~l~~~S~~~~  183 (264)
                      ||+ |+.+..++..+..|+.+++|+--.|+.+++.+...  +.+.+...-.+++.++.-.+.+.  |..+++...-+.+.
T Consensus        84 G~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~  160 (414)
T PRK10483         84 GKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK  160 (414)
T ss_pred             ChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            995 88999999999999999999999999999988642  11223333334444444444432  33444444434444


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      +..++.   .+..... ..+..   .-.+........+..+..++|++.+|| .|+++|++.+++++. .|+.||+..++
T Consensus       161 i~~f~~---~~~~l~~-~i~~~---~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d-~~kir~~I~iG  232 (414)
T PRK10483        161 VITFFL---TFGSLLG-HVQPA---TLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD-PKTIVKCLVYG  232 (414)
T ss_pred             HHHHHH---HHHHHHh-hcCHH---HHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC-HHHHHHHHHHH
Confidence            322221   1111111 11100   000000011111224779999999999 999999999998764 34777776543

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.78  E-value=1.2e-17  Score=152.03  Aligned_cols=216  Identities=14%  Similarity=0.111  Sum_probs=151.2

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      ++|++.+++++.+..+.+|+|+|+||.+.+++|+.+++++++++++++.||+.++.|+..+.+    +..++..++|+.+
T Consensus         6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~----~g~~l~tma~~~L   81 (415)
T PRK09664          6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP----VGSSFNTITKDLI   81 (415)
T ss_pred             hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHc
Confidence            455588999999999999999999999999999999999999999999999999999988732    3459999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcC--CCcchhhHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSL  183 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~--r~l~~l~~~S~~~~  183 (264)
                      ||+ |+.+..++..+..|+.+++|+--.|+.+++.+.... +-+.+...-.+++.++.-++.+.  |..+++...-+.+.
T Consensus        82 G~~-g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~  159 (415)
T PRK09664         82 GNT-WNIISGITVAFVLYILTYAYISANGAIISETISMNL-GYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLK  159 (415)
T ss_pred             ChH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            995 999999999999999999999999999999886411 11222222234444444444333  33444444333333


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCcc-ccC---Cc-hhh-hhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688          184 LLSLGYSFLVVGACINAGFSKNAPPKDYS-LES---SK-SAR-IFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN  256 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~---~~-~~~-~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~  256 (264)
                      +..++.   .+.....        +.+.+ +..   .. ... ...+..++|++.+|| .|+++|++.+.+++. .|+.|
T Consensus       160 ii~f~~---~~~~l~~--------~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d-~~~~~  227 (415)
T PRK09664        160 IISFVI---VFGSFFF--------QVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR-KDKLI  227 (415)
T ss_pred             HHHHHH---HHHHHhh--------cccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc-HHHHH
Confidence            322211   1111111        11111 110   00 001 124778999999999 999999999998754 34555


Q ss_pred             eee
Q 024688          257 RIQ  259 (264)
Q Consensus       257 ~~~  259 (264)
                      |+.
T Consensus       228 kaI  230 (415)
T PRK09664        228 KSV  230 (415)
T ss_pred             HHH
Confidence            543

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.75  E-value=8.1e-17  Score=147.19  Aligned_cols=221  Identities=13%  Similarity=0.100  Sum_probs=152.5

Q ss_pred             CCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCC
Q 024688           28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGS  107 (264)
Q Consensus        28 ~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~  107 (264)
                      +.+.+++++.+..+.+|+|+|+||.+.+.+|..++++++++.+.++++|..++.|...+.+    +..+|.+++++.+||
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~----~~~~~~~~a~~~lG~   77 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP----EGSSLTSMAEKYLGK   77 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHhCh
Confidence            4578999999999999999999999999999999999999999999999999999987632    245999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 024688          108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL  187 (264)
Q Consensus       108 ~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~  187 (264)
                      + |+++..++..+..++.+++|..-.++.+++.+..... .+.+...-.+++.++.-.+... .-+...+++..-+...+
T Consensus        78 ~-g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i  154 (394)
T PF03222_consen   78 K-GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI  154 (394)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            5 8899999999999999999999999999998875431 1222222223333332222222 22234444333332121


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeec
Q 024688          188 GYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTF  261 (264)
Q Consensus       188 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~  261 (264)
                      ......+...+.+-   +.+  ......+...++...+.++|+..+|| .|+++|++.+.+++. +|+.||+..+
T Consensus       155 ~~~~~l~~~~~p~~---~~~--~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d-~~k~~~ai~~  223 (394)
T PF03222_consen  155 ISFIILVVYLIPHW---NPS--NLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD-PKKIRKAIII  223 (394)
T ss_pred             HHHHHHHHHHhhhc---CHH--HhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc-HHHHHHHHHH
Confidence            11111111111111   100  00011111223346789999999999 999999999999864 5677777654

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.75  E-value=1.1e-16  Score=146.29  Aligned_cols=216  Identities=17%  Similarity=0.141  Sum_probs=149.1

Q ss_pred             chHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCch
Q 024688           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW  109 (264)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~  109 (264)
                      +.+++++.+..+.+|+|+|+||.+...+|++++++++++++.++.|+.+++.|+..+.    .+..++.+++++.+||+ 
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~----~~~~~~~~~a~~~LG~~-   78 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV----PADTGLGTLAKRYLGRY-   78 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCCHHHHHHHHhChH-
Confidence            6889999999999999999999999999999999999999999999999999976652    12459999999999996 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 024688          110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY  189 (264)
Q Consensus       110 g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~  189 (264)
                      |+++..++..+..|..+.+|..-.|+.+.+.++.+-.+ +.+.....+++.++.-...+. ..+...+++.+=+...+..
T Consensus        79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~  156 (403)
T PRK15132         79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIF  156 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999998887653211 223333334444333223322 2233444433222211111


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          190 SFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       190 ~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      .+......+.+        .+.+ +...+. +...+..++|++.+|| .|+++|++.+.+++ ++++.||+..++
T Consensus       157 ~~~~~~~l~p~--------~~~~~L~~~~~-~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~-~~~~~~k~i~~G  221 (403)
T PRK15132        157 LVVMLALMMPH--------IHKVNLLTLPL-QQGLALSAIPVIFTSFGFHGSVPSIVSYMGG-NIRKLRWVFIIG  221 (403)
T ss_pred             HHHHHHHHHHh--------cCHHHHhcCCc-cccHHHHHHHHHHHHhhCCcccHHHHHHhCc-CHHHHHHHHHHH
Confidence            11111111111        1111 111010 0013789999999999 99999999999976 456777776543

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.73  E-value=6.6e-17  Score=147.36  Aligned_cols=216  Identities=13%  Similarity=0.088  Sum_probs=156.7

Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHH
Q 024688           34 AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYF  113 (264)
Q Consensus        34 a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~  113 (264)
                      ++..++++++|+|++++|.++++.|+.++.+.+++.++++.++..++.|...+.|  +  ..+|.+.+++.+|| +++++
T Consensus         2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p--~--~~~~~~~~~~~~G~-~~g~~   76 (381)
T TIGR00837         2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP--G--GASFNTIAKDLLGK-TGNII   76 (381)
T ss_pred             ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C--CCCHHHHHHHHhCH-HHHHH
Confidence            4456789999999999999999999999999999999999999999999987642  2  34999999999999 68899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHH
Q 024688          114 VIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV  193 (264)
Q Consensus       114 ~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~i  193 (264)
                      +.+...+.++..+.+|.+..++.+..++..+... ........+++.+++.++.. +..+..++++.+.+...+...++.
T Consensus        77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~  154 (381)
T TIGR00837        77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGF-PWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALV  154 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887642211 12333333444445555544 456788888877776554443333


Q ss_pred             HHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       194 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      ++....+...++     ......+...+.++..+++.+.++| +|.+++++.+|++|| +|+++|+..++
T Consensus       155 ii~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g  218 (381)
T TIGR00837       155 FSGLLPHVKGDL-----LLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIG  218 (381)
T ss_pred             HHHHHhhccHHH-----HhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHH
Confidence            333332211001     0000010112336789999999999 999999999999887 67888887654

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.61  E-value=6.5e-14  Score=128.09  Aligned_cols=222  Identities=10%  Similarity=0.006  Sum_probs=142.1

Q ss_pred             HHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHHH
Q 024688           35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV  114 (264)
Q Consensus        35 ~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~  114 (264)
                      ...+..+.+|+|+|+||-.....|..++++++++.+.+++|+...|.|...+.   .++..+|.+++++.+||+ |+.+.
T Consensus        25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~---~~~~~~i~~v~~~~lG~~-g~~i~  100 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG---SNPSGNITETVEEHFGKT-GGVVI  100 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCCCCHHHHHHHHcChh-HHHHH
Confidence            38899999999999999999999999999999999999999999999987652   123459999999999997 66999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 024688          115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV  194 (264)
Q Consensus       115 ~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii  194 (264)
                      .++.++..+..+.+|...+.+.++..+.+.-......+....+++.+++.......+ +..-+++.+=+...+...+...
T Consensus       101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~Lv~~~i~~l~~l~  179 (443)
T PRK13629        101 TFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSYLVWPFIASLVLIS  179 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888777654332111123344444444444444433322 3333333322221111111111


Q ss_pred             HHHHhcCCCCCCCCCCccc-cCC-chhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccc-------c--cccceeeeec
Q 024688          195 GACINAGFSKNAPPKDYSL-ESS-KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDI-------G--HLEMNRIQTF  261 (264)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p-------~--~~~m~~~~~~  261 (264)
                      ...+.+-..++..+.+.+. ... .......+..++|++.||| .|+++|++...+|+.       +  +++.+|+.+.
T Consensus       180 ~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~  258 (443)
T PRK13629        180 LSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISR  258 (443)
T ss_pred             HHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            1111111000000000000 000 0011124788999999999 999999999995443       3  4666666544

>TIGR00814 stp serine transporter

Probab=99.53  E-value=9.6e-13  Score=120.40  Aligned_cols=216  Identities=11%  Similarity=0.006  Sum_probs=141.9

Q ss_pred             HHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHHH
Q 024688           35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV  114 (264)
Q Consensus        35 ~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~  114 (264)
                      .+.+..+++|+|+|+||....+.||...++..++...+++++..++.|.....   ..+..++.|++++.|||+ +..+.
T Consensus         9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~---~~p~~~i~~~~~~~fGk~-~G~ii   84 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS---KNPCEDITEVVEEHFGKN-WGILI   84 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHcCHH-HHHHH
Confidence            57889999999999999999999999999999999999999999999985542   122459999999999995 66999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHhhc-ccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHH
Q 024688          115 IFIQTAINTGVGIGAILLAGECLQIMYSD-LYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV  193 (264)
Q Consensus       115 ~i~i~~~~~g~~i~y~i~~~~~l~~~~~~-~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~i  193 (264)
                      .++..+..+..+.+|....++.+...+.. +..+.+. +....+++.+++... .....+.+.+++.+-+...++..+..
T Consensus        85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~-~~i~~lilv~il~~i-v~~G~~~i~r~~~il~~~~ii~l~~l  162 (397)
T TIGR00814        85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPL-RGLLSLALILILVAI-MSFGEKLLFKIMGPLVFPLVLILVLL  162 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888887654 2222221 111122222222222 23355666666655553232222222


Q ss_pred             HHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHH----Hhccccc--cccceeeeec
Q 024688          194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQ----LQFLDIG--HLEMNRIQTF  261 (264)
Q Consensus       194 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~----~~m~~p~--~~~m~~~~~~  261 (264)
                      ....+.+.   +.  ......++....+.++..+++...+|| +|+++|++.    +|.+||+  +|+.+|+.+.
T Consensus       163 ~~~lip~~---~~--~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~  232 (397)
T TIGR00814       163 SLYLIPHW---NG--ANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKG  232 (397)
T ss_pred             HHHHHHHc---CH--HHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            22222211   00  000000011112346889999999999 999999998    3444444  5566665543

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10655 potE putrescine transporter; Provisional

Probab=99.11  E-value=1.2e-08  Score=94.69  Aligned_cols=224  Identities=10%  Similarity=-0.046  Sum_probs=127.4

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      +|+-+.++.+...+++++|+|++.+|..+++.|. .+++..++.+++.......+.|...+.|+.|    ..-.-+++.+
T Consensus         5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~~~   79 (438)
T PRK10655          5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEYAF   79 (438)
T ss_pred             cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHHHc
Confidence            5677899999999999999999999999998886 5666666777776777777777665544444    3344456889


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~  185 (264)
                      ||++| +++.....+.....+.++.+...+.+..++.. . .+......+.++..++..-+ ..+..+....++.+....
T Consensus        80 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~-~-~~~~~~~~~~~~~l~~~~~l-n~~g~~~~~~i~~i~~~~  155 (438)
T PRK10655         80 GKSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGA-T-LSPVQICLATIGVLWLCTVA-NFGGARITGQISSVTVWG  155 (438)
T ss_pred             CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c-cchHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHH
Confidence            99755 77777665555544444444444454444321 1 11111111111111122222 233455555555444432


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       186 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      .+..+++++.........++. ....+..+  .+.+.++..++....|+| |-.....+-+|+|||+| +++|+...+
T Consensus       156 ~l~~l~~~~i~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~  229 (438)
T PRK10655        156 VIIPVVGLSIIGWFWFSPSLY-VAAWNPHH--LPFFSAVGSSIAMTLWAFLGLESACANSDAVENPER-NVPIAVLGG  229 (438)
T ss_pred             HHHHHHHHHHHHHHHhCcccc-cCCcCccC--CchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc-cccHHHHHH
Confidence            222222222222111101110 00111111  111235677788899999 99999999999999964 888876544

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.09  E-value=1.1e-08  Score=95.05  Aligned_cols=223  Identities=9%  Similarity=0.007  Sum_probs=125.8

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      +|+-+.++.+...+++++|+|++.+|...++.|.. .++..++.++........+.|...+.|+.|. ..+|.   ++ +
T Consensus         4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG-~y~y~---~~-~   77 (435)
T PRK10435          4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGG-PIAYA---GE-I   77 (435)
T ss_pred             CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhHHH---HH-H
Confidence            67778999999999999999999999999998853 4555555555666666666676665544432 12333   45 6


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~  185 (264)
                      |+++| +++........+....++.+...+.+..++....  ++.....+.++...+ +-+...+..+..+.++.+..+.
T Consensus        78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~--~~~~~~~~~~~i~~~-~~~ln~~gvk~~~~i~~i~~~~  153 (435)
T PRK10435         78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN--DPIPAGIACIAIVWV-FTFVNMLGGTWVSRLTTIGLVL  153 (435)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--ChHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHH
Confidence            88766 7777665544444444554555555555543221  111111111111111 1112234455555555444432


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       186 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      .++.++..+........+++. ..+++...  .....++..++....|+| +-......-+|+|||+ |+++|+...+
T Consensus       154 ~li~~~~~~i~g~~~~~~~~~-~~~~~~~~--~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~-r~iPrAi~~~  227 (435)
T PRK10435        154 VLIPVVGTAIVGWHWFDAATY-AANWNTSD--TTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK-RTVPLATMLG  227 (435)
T ss_pred             HHHHHHHHHHHHHHHcCHHhh-cccccCCC--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc-ccccHHHHHH
Confidence            222222111111111100000 01111111  122457889999999999 9999999999999995 5888877654

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.04  E-value=4.1e-08  Score=92.22  Aligned_cols=228  Identities=10%  Similarity=0.013  Sum_probs=132.2

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhC-hhHHHHHHHHHHHHHHHHHHHHHHcchhccc-cCcccccHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG-WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK-AGRRHIRFRELAAD  103 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G-~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~-~~~~~~sy~~l~~~  103 (264)
                      +|+-+.+++++..+++++|+|++.+|....+.| ....++..++.++..........|...+.|+ .|    ..-+-.++
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~~   81 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYARE   81 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHHh
Confidence            577789999999999999999999999987655 2223444556666666666777777666544 33    22334588


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .+||++| +++.....+.......++.....+.+..+++.+.++.......+.++..++...+ -.+.++..++++.+..
T Consensus        82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l-n~~Gi~~~~~i~~~~~  159 (473)
T TIGR00905        82 GFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFL-VLRGVRQAAFINTITT  159 (473)
T ss_pred             HcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHH
Confidence            9999766 7777776665555556665555566665554221111111111111111222222 3456677766666655


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCcccc-CCc-hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeee
Q 024688          184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLE-SSK-SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQT  260 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~  260 (264)
                      ...+..++++++..+.....++. ..+.... .+. ...+..+..++....|+| +-.....+-+|+||  +|+.+|+..
T Consensus       160 ~~~l~~l~~~ii~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~--~r~iPrai~  236 (473)
T TIGR00905       160 IAKLIPLFLFIIIGWFWFKLDLF-TADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN--KSDVGKATV  236 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhc-ccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc--cccchHHHH
Confidence            43333322222222211100110 0011100 000 112335778888999999 99999999999999  578888765


Q ss_pred             cc
Q 024688          261 FS  262 (264)
Q Consensus       261 ~~  262 (264)
                      .+
T Consensus       237 ~~  238 (473)
T TIGR00905       237 LG  238 (473)
T ss_pred             HH
Confidence            54

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11021 putative transporter; Provisional

Probab=99.03  E-value=3.4e-08  Score=91.04  Aligned_cols=215  Identities=16%  Similarity=0.166  Sum_probs=122.6

Q ss_pred             chHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCch
Q 024688           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW  109 (264)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~  109 (264)
                      ++++++...+++++|+|++.+|....+.+=-.+++..++.+++.......+.|...+.|+.|    ..-.-+++.+|+++
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~~   77 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPRL   77 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCchh
Confidence            47889999999999999999998766653235566666677777777777888777755444    33445677899987


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 024688          110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY  189 (264)
Q Consensus       110 g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~  189 (264)
                      | +++.............+......+.+..++.    ..........++..++.. +--.+..+..++++.+..+..+. 
T Consensus        78 g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~ln~~Gv~~~~~~~~~~~~~~~~-  150 (410)
T PRK11021         78 G-RVTGWLFLSVIPVGLPAALQIAAGFGQALFG----WSSWQLLLAELLTLALLW-LLNLRGASSSANLQTVIALLIVA-  150 (410)
T ss_pred             H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHH-
Confidence            6 6666555443322233333333444444432    111111111111122222 22344556666655543322111 


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          190 SFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       190 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                        ++... ...+.. +  ..+.+.......++.++..++....|+| +.......-+|+|||+ |+++|+...+
T Consensus       151 --i~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-k~iPrAi~~~  217 (410)
T PRK11021        151 --LVVAI-WWAGDI-K--PADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE-RDFPRALMIG  217 (410)
T ss_pred             --HHHHH-HHHcCC-c--hhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc-ccccHHHHHH
Confidence              11111 111110 1  1111111111123346788999999999 9999999999999996 5888876554

>TIGR00909 2A0306 amino acid transporter

Probab=99.03  E-value=2.3e-08  Score=92.61  Aligned_cols=223  Identities=10%  Similarity=0.063  Sum_probs=135.9

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGL-GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~-G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (264)
                      +|+-+.++.+...+++++|+|++.+|...... |. .+.+..++.++........+.|...+.|+.|    ..-+-.++.
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~   76 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG----SPYTYAYEA   76 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----cceeeHHHH
Confidence            57778999999999999999999999766543 43 3445555566666677777788776654333    223344568


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCc---------hhhHHHHHHHHHHHHHhcCCCcchh
Q 024688          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSL---------KLYEFIAMVTVVMIVLSQLPTFHSL  175 (264)
Q Consensus       105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~---------~~~~~~~i~~~i~~pls~~r~l~~l  175 (264)
                      +||+.| +++.....+.....+..+....++.+..++.....+.+.         ....+..+..++++-+-..+..+..
T Consensus        77 ~G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~  155 (429)
T TIGR00909        77 MGELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES  155 (429)
T ss_pred             hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence            999655 777777777776677777777778777766421111000         0000111222222222234467777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688          176 RHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE  254 (264)
Q Consensus       176 ~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~  254 (264)
                      ++++.+.....+...++++.........+     +++...+  .....+..++....|+| +.......-+|+|||+ |+
T Consensus       156 ~~~~~v~~~~~i~~l~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~-r~  227 (429)
T TIGR00909       156 GKVNDILVVLKVAALLLFAALGAIHFASN-----NYTPFMP--MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE-RD  227 (429)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhCcHH-----hcCCCCC--CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc-cc
Confidence            77777666544443333223232221101     1111111  12235788899999999 9999999999999995 57


Q ss_pred             ceeeeecc
Q 024688          255 MNRIQTFS  262 (264)
Q Consensus       255 m~~~~~~~  262 (264)
                      .+|+...+
T Consensus       228 ip~ai~~~  235 (429)
T TIGR00909       228 IPKAIILS  235 (429)
T ss_pred             ccHHHHHH
Confidence            78776544

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.02  E-value=4.2e-08  Score=91.43  Aligned_cols=222  Identities=10%  Similarity=0.010  Sum_probs=125.0

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      +|+-+.++++...+++++|+|++.+|...++.|. ..+...++.++........+.|.....|+.|. ...|   +++.+
T Consensus         7 ~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG-~y~~---~~~~~   81 (445)
T PRK10644          7 AHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGG-SYAY---ARRCF   81 (445)
T ss_pred             CCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhHH---HHHHc
Confidence            6778899999999999999999999999998874 23444444455555566666776666554442 2244   78889


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHh--cCCCcchhhHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSLRHINLVSL  183 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls--~~r~l~~l~~~S~~~~  183 (264)
                      ||.+| +++.....+.......+......+.+..+++..  +..   ....++..+++..++  -.+..+...++..+..
T Consensus        82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~  155 (445)
T PRK10644         82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL--KDP---LVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_pred             CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCc---HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            99766 767766655544444444434444444443321  111   111111122222222  2334566666655554


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      ...+..+++.+.........++. ....+..+  ...+..+..++....|+| |-......-+|+|||+| +.+|+...+
T Consensus       156 ~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iPrai~~s  231 (445)
T PRK10644        156 VLALIPIVGIAVFGWFWFRGETY-MAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGG  231 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhc-cCCccccc--cchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc-chhHHHHHH
Confidence            43332222222222111110010 00111111  112235667888899999 99999999999999964 788776544

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.02  E-value=3.5e-08  Score=92.12  Aligned_cols=221  Identities=14%  Similarity=0.124  Sum_probs=134.3

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      .+|+-+.++..+..+++++|+|++.+| .+.+.+|. .+++..++.+++.......+.|.....|+.|    .+.+-+++
T Consensus        10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G----g~~~~~~~   84 (452)
T TIGR01773        10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG----SFSTYADD   84 (452)
T ss_pred             HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence            367778999999999999999999999 66778885 4666777777777777777888776644333    55667789


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .+|+.+| +++.....+.....+.+.....++.++..++    +  .....+.++..++...+. .+..+..+.+..+..
T Consensus        85 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~~  156 (452)
T TIGR01773        85 AIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----D--IPLWLFSLILTIVLTLTN-LYSVKSYGEFEFWFA  156 (452)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CcHHHHHHHHHHHHHHHH-HHhcchhhHHHHHHH
Confidence            9999655 7888777766666666666666666665432    2  122222222222222222 234555555554433


Q ss_pred             HHHHHHHHHHHHHH---HhcCCCCCCCCCCcc-cc---CCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688          184 LLSLGYSFLVVGAC---INAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM  255 (264)
Q Consensus       184 ~~~~~~~~~ii~~~---~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m  255 (264)
                      +..+..++..++..   .....+... ..++. ..   +.....+.++..++....|+| +-.....+-+|+|||++ +.
T Consensus       157 ~~ki~~l~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r-~i  234 (452)
T TIGR01773       157 LIKVIAIIAFIILGAVAIFGFAPGSE-VSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK-SI  234 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh-HH
Confidence            32222221111111   111111000 00010 10   100112235889999999999 99999999999999964 78


Q ss_pred             eeeee
Q 024688          256 NRIQT  260 (264)
Q Consensus       256 ~~~~~  260 (264)
                      +|+..
T Consensus       235 PrAi~  239 (452)
T TIGR01773       235 TRATN  239 (452)
T ss_pred             HHHHH
Confidence            87754

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.97  E-value=1.3e-07  Score=88.86  Aligned_cols=223  Identities=14%  Similarity=0.160  Sum_probs=128.4

Q ss_pred             eeccCCchHHHHHHHHhhhhhhhhhhHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (264)
                      ..+|+-+.++.....+++++|+|++-.|. +++++|. ..++..++.+++......-+.|.....  +.  ..++.+.++
T Consensus        17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~--~~--~~~~~~ya~   91 (469)
T PRK11049         17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN--LE--YKSFSDFAS   91 (469)
T ss_pred             hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc--CC--CCcHHHHHH
Confidence            35788899999999999999999999866 7778886 445555566666666665566654321  11  226677899


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (264)
Q Consensus       103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~  182 (264)
                      +.+|+.+| +++.....+.......+.....+..+...+    |+  .....+.++..+++..+.+ +..+..+.++.+.
T Consensus        92 ~~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~----p~--~~~~~~~~~~~~~~~~iN~-~g~~~~~~i~~~~  163 (469)
T PRK11049         92 DLLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWF----PD--LSDWVASLAVVLLLLSLNL-ATVKMFGEMEFWF  163 (469)
T ss_pred             HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC--CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence            99999655 888887776654444444555555554433    22  1222222222233333332 3456666665544


Q ss_pred             HHHHHHHHHHHHHHHHh---cCCCC-CCCCCCcc-ccCC-c--hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccc
Q 024688          183 LLLSLGYSFLVVGACIN---AGFSK-NAPPKDYS-LESS-K--SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHL  253 (264)
Q Consensus       183 ~~~~~~~~~~ii~~~~~---~~~~~-~~~~~~~~-~~~~-~--~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~  253 (264)
                      ....+..++.+++..+.   .+..+ +.....+. ..+. +  ...+..++.++....|+| |-......-+|+|||+ |
T Consensus       164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~-r  242 (469)
T PRK11049        164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE-K  242 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh-h
Confidence            43332222222222111   11100 00000010 0000 0  112235788999999999 9999999999999996 4


Q ss_pred             cceeeee
Q 024688          254 EMNRIQT  260 (264)
Q Consensus       254 ~m~~~~~  260 (264)
                      +++|+..
T Consensus       243 ~iPrai~  249 (469)
T PRK11049        243 SLPRAIN  249 (469)
T ss_pred             HHHHHHH
Confidence            7777653

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.96  E-value=1.2e-07  Score=89.04  Aligned_cols=225  Identities=11%  Similarity=0.075  Sum_probs=125.5

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~-~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      .+|+-+.++.....++.++|+|++..|... +.+|-...++..++.+++......-+.|.....|+.|    .+-.-+++
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~~   87 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAAR   87 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence            478888999999999999999999888775 5667544455666677777777777788776655444    44456677


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .+|+.+| +++.....+.....+.......+..+...    .|+  .....+.++..+++..+. .+..+..+.++....
T Consensus        88 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~p~--~~~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~~  159 (471)
T PRK11387         88 YLGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYW----FPQ--VPVWPWCLLFCALIFGLN-VVSTRFFAEGEFWFS  159 (471)
T ss_pred             hcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCc--CcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence            8999766 66766665554444433333333333222    222  122222233333333332 234555554443332


Q ss_pred             HHHHHHHHHHHHHHH---hc-CCC-CCCCCC---CccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688          184 LLSLGYSFLVVGACI---NA-GFS-KNAPPK---DYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE  254 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~---~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~  254 (264)
                      ..-++.++..++..+   .. ... ++.+..   +++..+.......++..++....|+| |-......-+|+|||+ |+
T Consensus       160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~-r~  238 (471)
T PRK11387        160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA-KV  238 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh-hH
Confidence            222222111111111   10 000 000000   11111110112235677888889999 9999999999999996 48


Q ss_pred             ceeeeecc
Q 024688          255 MNRIQTFS  262 (264)
Q Consensus       255 m~~~~~~~  262 (264)
                      ++|+...+
T Consensus       239 iPrAi~~~  246 (471)
T PRK11387        239 IPVAIRTT  246 (471)
T ss_pred             HHHHHHHH
Confidence            88876543

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.91  E-value=1.5e-07  Score=88.01  Aligned_cols=220  Identities=12%  Similarity=0.089  Sum_probs=130.9

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGL-GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~-G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      .+|+-+.++..+.-+++++|+|++..|....+. |- ..++..++.+++.+....-+.|.....|..|    ++-+-+++
T Consensus        10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG----g~y~~~~~   84 (456)
T PRK10238         10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG----SFSHFAYK   84 (456)
T ss_pred             hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence            477888999999999999999998888766654 53 4455556666666666666777766654443    44555677


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .+||. ..+++.....+.....+.+.....++.++...    |+  .....+.+++.++..-+.+ +..+.++.++.+..
T Consensus        85 ~~g~~-~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~----p~--~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~  156 (456)
T PRK10238         85 YWGSF-AGFASGWNYWVLYVLVAMAELTAVGKYIQFWY----PE--IPTWVSAAVFFVVINAINL-TNVKVFGEMEFWFA  156 (456)
T ss_pred             HcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc--CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence            89995 44888888877777777777766677665543    22  2233333333333333332 24455555554443


Q ss_pred             HHHHHHHHHHHHHHH---hcCCCCCCCCCCc----cccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688          184 LLSLGYSFLVVGACI---NAGFSKNAPPKDY----SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM  255 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m  255 (264)
                      +..+..++++++..+   ..+.. . +....    +..+.....+..+..+++...|+| |-......-+|+|||+ |++
T Consensus       157 ~iki~~i~~~ii~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~-r~i  233 (456)
T PRK10238        157 IIKVIAVVAMIIFGGWLLFSGNG-G-PQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE-QSI  233 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC-C-CCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh-hHH
Confidence            333322222111111   11111 0 11011    101110112235667888899999 9999999999999996 478


Q ss_pred             eeeee
Q 024688          256 NRIQT  260 (264)
Q Consensus       256 ~~~~~  260 (264)
                      +|+..
T Consensus       234 PrAi~  238 (456)
T PRK10238        234 PKATN  238 (456)
T ss_pred             HHHHH
Confidence            88764

>PRK10249 phenylalanine transporter; Provisional

Probab=98.91  E-value=1.7e-07  Score=87.68  Aligned_cols=223  Identities=12%  Similarity=0.088  Sum_probs=130.7

Q ss_pred             eeccCCchHHHHHHHHhhhhhhhhhhHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~-~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (264)
                      ..+|+-+.++..+..++.++|+|++..|-... .+|. ..++..++.+++......-+.|...+.|..|    ++..-++
T Consensus        18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G----g~~~y~~   92 (458)
T PRK10249         18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG----SFAHFAY   92 (458)
T ss_pred             hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHH
Confidence            46777789999999999999999999887655 4465 4666667777777777888888777655444    5556778


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (264)
Q Consensus       103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~  182 (264)
                      +.+|+.+| +++.....+.......+.....+..++.+.    ++  .....+.++..+++..+. .+..+..+.+....
T Consensus        93 ~~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~  164 (458)
T PRK10249         93 KYWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWF----PD--VPTWIWAAAFFIIINAVN-LVNVRLYGETEFWF  164 (458)
T ss_pred             HHhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----Cc--CcHHHHHHHHHHHHHHHH-HhcchhhhhHHHHH
Confidence            99999666 777776665554444444444445554332    22  222222222323333332 34555555554333


Q ss_pred             HHHHHHHHHHHHH--HHH-hcCCCCCCCCCCcc--ccCC--chhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688          183 LLLSLGYSFLVVG--ACI-NAGFSKNAPPKDYS--LESS--KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE  254 (264)
Q Consensus       183 ~~~~~~~~~~ii~--~~~-~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~  254 (264)
                      .+.-+..+++.++  ... ..+...  +..+.+  ....  ....+.++..++....|+| +-......-+|+|||+ |+
T Consensus       165 ~~ikv~~i~~~i~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~-k~  241 (458)
T PRK10249        165 ALIKVLAIIGMIGFGLWLLFSGHGG--EKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE-KS  241 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCC--CCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh-hH
Confidence            2222211111111  111 111110  011111  0000  0012335788999999999 9999999999999996 47


Q ss_pred             ceeeeecc
Q 024688          255 MNRIQTFS  262 (264)
Q Consensus       255 m~~~~~~~  262 (264)
                      ++|+...+
T Consensus       242 iPrai~~~  249 (458)
T PRK10249        242 IPKAVNQV  249 (458)
T ss_pred             HHHHHHHH
Confidence            87776543

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.90  E-value=1.4e-07  Score=90.27  Aligned_cols=232  Identities=10%  Similarity=0.036  Sum_probs=133.4

Q ss_pred             eeccCCchHHHHHHHHhhhhhhhhhhHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVF--RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~--~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~  101 (264)
                      ..+|+-+.++.+..-++.++|+|+..+|...  ..+|.. .++..++.++.+........|.....|..|. ...|.   
T Consensus        25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg-~Y~y~---   99 (557)
T TIGR00906        25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS-AYLYS---   99 (557)
T ss_pred             chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ceeeH---
Confidence            4678889999999999999999999999754  347753 4445556666666777777777666555543 23554   


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc----cc-C-----CCCchhh-HHHHHHHHHHHHHhcCC
Q 024688          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD----LY-P-----NGSLKLY-EFIAMVTVVMIVLSQLP  170 (264)
Q Consensus       102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~----~~-~-----~~~~~~~-~~~~i~~~i~~pls~~r  170 (264)
                      ++.+|+.+| +++.....+.....+.+.....++.+..++..    +. +     ....... ....+..++++-+...+
T Consensus       100 ~~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~  178 (557)
T TIGR00906       100 YVTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF  178 (557)
T ss_pred             HHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence            346898655 77777766655554444444445555544321    10 0     0111111 11111111122222345


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc-cccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcc
Q 024688          171 TFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFL  248 (264)
Q Consensus       171 ~l~~l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~  248 (264)
                      .++..++++.+..+..+..++++++........++...... +..+.....+.+++.+.....|+| |-..+...-+|.|
T Consensus       179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k  258 (557)
T TIGR00906       179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK  258 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence            67777777766665444433333333333221111110000 000000112236788999999999 9999999999999


Q ss_pred             ccccccceeeeecc
Q 024688          249 DIGHLEMNRIQTFS  262 (264)
Q Consensus       249 ~p~~~~m~~~~~~~  262 (264)
                      ||+ |+++|+...|
T Consensus       259 nP~-r~iP~aii~s  271 (557)
T TIGR00906       259 NPQ-RAIPIGIVTS  271 (557)
T ss_pred             Ccc-ccccHHHHHH
Confidence            996 4888876654

>TIGR00908 2A0305 ethanolamine permease

Probab=98.84  E-value=3.4e-07  Score=85.22  Aligned_cols=225  Identities=10%  Similarity=0.025  Sum_probs=129.5

Q ss_pred             eeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      +.+|+-+.++.....++.++|....+.+.+++..|+..-++..++.++........+.|.....|+.|    ..-.-+++
T Consensus         4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~~~   79 (442)
T TIGR00908         4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFARR   79 (442)
T ss_pred             hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence            35777889989888888888855566688889999865445555555555566666777766654433    33445688


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .+|+.+| +++.....+.......++....++.+...++.    .  ....+.++...+...+ -.+..+..++++.+..
T Consensus        80 ~~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~----~--~~~~~~~~~~~~~~~l-n~~g~~~~~~i~~~~~  151 (442)
T TIGR00908        80 AFGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPV----G--PGWLAALVFYIVFIGI-NILGVGEAAKLEFVVT  151 (442)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C--chhHHHHHHHHHHHHH-HHHHHHHHHhHHHHHH
Confidence            9999655 77777777776667777777777877666532    1  1122222222222222 2234455555554433


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC-CCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeee
Q 024688          184 LLSLGYSFLVVGACINAGFSK-NAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQT  260 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~  260 (264)
                      +..+..+++.+... ....+. +.-..+.. ..+.....+.+++.++....|+| |.......-+|+|||++ +.+|+..
T Consensus       152 ~~~~~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iprai~  229 (442)
T TIGR00908       152 AVAIIALGVFIGAM-VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR-DIPRGLI  229 (442)
T ss_pred             HHHHHHHHHHHHHH-hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccCHHHH
Confidence            32222211111111 111000 00000000 00011112236778888899999 99999999999999964 7887765


Q ss_pred             cc
Q 024688          261 FS  262 (264)
Q Consensus       261 ~~  262 (264)
                      .+
T Consensus       230 ~s  231 (442)
T TIGR00908       230 GA  231 (442)
T ss_pred             HH
Confidence            43

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10746 putative transport protein YifK; Provisional

Probab=98.83  E-value=5.5e-07  Score=84.38  Aligned_cols=222  Identities=14%  Similarity=0.151  Sum_probs=129.0

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~-~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      .+|+-+.++..+.-+.+++|+|++..|... +.+|. ..++..++.+++.+....-+.|.....|+.|    ++.+-+++
T Consensus         8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG----g~~~y~~~   82 (461)
T PRK10746          8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG----SFAVYAHR   82 (461)
T ss_pred             HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence            477888999999999999999999877654 45565 3455556666666777777777766644333    66777888


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .+|+.+| .++.....+.....+.+.+...+..++..+    |+  .....+..+..+++.-+.+ +..+..+.+.....
T Consensus        83 ~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~----p~--~~~~~~~~~~~~~~~~lN~-~gv~~~~~~e~~~~  154 (461)
T PRK10746         83 YMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWF----PE--MAQWIPALIAVALVALANL-AAVRLYGEIEFWFA  154 (461)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CC--CchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence            9999766 777777766655555555555555555443    22  2233333333333333322 23444444432222


Q ss_pred             HHHH----HHHHHHHHHHHhcCCCCCCCCCCcc-cc---CCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688          184 LLSL----GYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE  254 (264)
Q Consensus       184 ~~~~----~~~~~ii~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~  254 (264)
                      ..-+    ..+++.+.. ...+...+.+....+ ..   +.....+.++..++....|+| +-..+...-+|+|||+ |+
T Consensus       155 ~~ki~~i~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~-k~  232 (461)
T PRK10746        155 MIKVTTIIVMIVIGLGV-IFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQ-VT  232 (461)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh-hH
Confidence            1111    111111111 111111010000010 10   000112346779999999999 9999999999999996 58


Q ss_pred             ceeeeec
Q 024688          255 MNRIQTF  261 (264)
Q Consensus       255 m~~~~~~  261 (264)
                      ++|+.+.
T Consensus       233 iP~Ai~~  239 (461)
T PRK10746        233 LRSAVGK  239 (461)
T ss_pred             HHHHHHH
Confidence            8887653

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.83  E-value=6.1e-07  Score=84.19  Aligned_cols=226  Identities=11%  Similarity=0.042  Sum_probs=124.2

Q ss_pred             cCCchHHHHHHHHhhhhhhhhhhHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           27 SKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~GiL~LP~a~~-~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      |+-+.++.+...+++++|+|++.+|.... .+|....++..++.++........+.|...+.|+.+.-...|   +++.|
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y---~~~~f   77 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY---AKAGF   77 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhh---HHhHc
Confidence            34568899999999999999999998765 445333444456666666666777777766644322112244   78899


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHH-HHHHHHHHhcCCCcchhhHHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLL  184 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~i~~pls~~r~l~~l~~~S~~~~~  184 (264)
                      |+.+| +++.....+.......++.....+.+...++.+.  ...+...+.+. ..+..+-....+..+..++++.+..+
T Consensus        78 G~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~  154 (468)
T TIGR03810        78 GPFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG--GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI  154 (468)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            99655 7777776665555555555555555544433221  11111111111 11111222223566666666665554


Q ss_pred             HHHHHHHHHHHHHH--hcCCCCCCCCCCcc-cc-CC-chhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceee
Q 024688          185 LSLGYSFLVVGACI--NAGFSKNAPPKDYS-LE-SS-KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRI  258 (264)
Q Consensus       185 ~~~~~~~~ii~~~~--~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~  258 (264)
                      ..+..+++.++...  ..+.  .......+ .. +. ....+..+..++....|+| +-.....+-+|.||  +|+++|+
T Consensus       155 ~ki~~l~~~ii~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~--~k~ip~a  230 (468)
T TIGR03810       155 AKLVPLFVFIVIGIFAFKGD--TFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK--RSDVGKA  230 (468)
T ss_pred             HHHHHHHHHHHHHHHHhcHh--hcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC--cccchHH
Confidence            33322222222111  1110  00000000 00 00 0111234667888999999 99888888888887  5788888


Q ss_pred             eecc
Q 024688          259 QTFS  262 (264)
Q Consensus       259 ~~~~  262 (264)
                      ...+
T Consensus       231 i~~~  234 (468)
T TIGR03810       231 TVIG  234 (468)
T ss_pred             HHHH
Confidence            7554

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=98.83  E-value=5.2e-08  Score=79.84  Aligned_cols=217  Identities=16%  Similarity=0.172  Sum_probs=137.5

Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchh--------------ccc----c----
Q 024688           33 HAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH--------------CEK----A----   90 (264)
Q Consensus        33 ~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~--------------~~~----~----   90 (264)
                      -....+.|-++|+|-|+||.+|+.+||.+++.++++.++.++.+.....++...              +++    .    
T Consensus        16 vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd   95 (319)
T KOG3832|consen   16 VGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASD   95 (319)
T ss_pred             hhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCC
Confidence            455678889999999999999999999999999999999998887776554211              000    0    


Q ss_pred             -------C-----c------------------ccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 024688           91 -------G-----R------------------RHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIM  140 (264)
Q Consensus        91 -------~-----~------------------~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~  140 (264)
                             +     +                  +++...+++...|.| .|--+..+++.+++||-...|--.+-.++.++
T Consensus        96 ~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~i  174 (319)
T KOG3832|consen   96 DDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI  174 (319)
T ss_pred             CcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence                   0     0                  012456677777888 79899999999999999999988877666665


Q ss_pred             hhc-cc---------C---C----C-C-ch----hhHHHHHHHHH-HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 024688          141 YSD-LY---------P---N----G-S-LK----LYEFIAMVTVV-MIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGA  196 (264)
Q Consensus       141 ~~~-~~---------~---~----~-~-~~----~~~~~~i~~~i-~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~  196 (264)
                      ... .+         |   |    + + ++    .+.|++|+.++ .+|+.+. ++++-++..++..++-..-....+..
T Consensus       175 tcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l  253 (319)
T KOG3832|consen  175 TCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISL  253 (319)
T ss_pred             hhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhh
Confidence            432 11         1   1    1 1 11    13345555444 4677765 67888888877776554432222222


Q ss_pred             HHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccccee
Q 024688          197 CINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNR  257 (264)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~  257 (264)
                      .-.+.-      .|-....++.-.+-++=.-++...|+| ||...|.....++....-+.+.
T Consensus       254 ~tmqae------edaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~gv~f~c  309 (319)
T KOG3832|consen  254 ATMQAE------EDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKDGVFFKC  309 (319)
T ss_pred             hhhhhc------ccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeeccceeEEe
Confidence            222221      121111111111113334577888999 9999999888777655444443

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=98.82  E-value=6.5e-08  Score=89.29  Aligned_cols=228  Identities=14%  Similarity=0.110  Sum_probs=142.1

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG--WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G--~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (264)
                      .+|+-+.+++++.++++++|+|+...|-...+-+  ..+++++-++.++++..++..-.|.-...|+.|-   +|.=+. 
T Consensus        10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ayi~-   85 (479)
T KOG1287|consen   10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAYIS-   85 (479)
T ss_pred             ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhhHH-
Confidence            4788899999999999999999999999887665  4457777778888888888877776554444443   444444 


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGEC-LQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (264)
Q Consensus       103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~  181 (264)
                      ++||+.+|.....+......-..+..+-+..++. +++.+. .|   +..+....++..+.+..++. .|.-.+++.+.+
T Consensus        86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c---~~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~v  160 (479)
T KOG1287|consen   86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC---DVPRVASKLLAAALLVLLTL-INSFSVKWATRV  160 (479)
T ss_pred             HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC---CCchHHHHHHHHHHHHHHHH-HhhhhhhHHHHH
Confidence            4688767866666666666666667777777776 666654 22   22222223334444444443 245555555544


Q ss_pred             HHH---HHHHHHHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688          182 SLL---LSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN  256 (264)
Q Consensus       182 ~~~---~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~  256 (264)
                      =.+   .-++.+.++++..+......+..+.+.+ ..++ +.+..++..++=.-.|+| +-.++=.+-+|+|||. |+++
T Consensus       161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~-~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~-ktLP  238 (479)
T KOG1287|consen  161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGS-DTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR-RTLP  238 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhchheeEecccccccccccccC-cCchHHHHHHHHHhhhcccCchhhccchHhhcCcc-ccch
Confidence            333   3333444444444332211110011111 2222 122235778888999999 9999999999999995 5999


Q ss_pred             eeeeccc
Q 024688          257 RIQTFSR  263 (264)
Q Consensus       257 ~~~~~~~  263 (264)
                      |+.-.|+
T Consensus       239 ~Ai~isi  245 (479)
T KOG1287|consen  239 RAILISI  245 (479)
T ss_pred             HHHHHhh
Confidence            8876554

>PRK10836 lysine transporter; Provisional

Probab=98.82  E-value=5.8e-07  Score=84.84  Aligned_cols=224  Identities=13%  Similarity=0.169  Sum_probs=119.7

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      .+|+-+.++.....+++++|+|++.+|. +.+.+|....++..++.+++....+.-+.|...+.|+.|    ..-.-+++
T Consensus        13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g~y~y~~~   88 (489)
T PRK10836         13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----SFATYGQN   88 (489)
T ss_pred             ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHH
Confidence            4788899999999999999999999996 666778644677777788888888888888877765544    44445566


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGEC-LQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~  182 (264)
                      .+|+.+| .++.....+. +..+.+.-....+. +...    .++.  ....+..+..+++.-+.+ +..+..+.+....
T Consensus        89 ~~g~~~g-f~~Gw~~~~~-~~~~~a~~~~a~~~~~~~~----~~~~--~~~~~~~~~~~~~~~lN~-~gv~~~~~~~~~~  159 (489)
T PRK10836         89 YVEEGFG-FALGWNYWYN-WAVTIAVDLVAAQLVMSWW----FPDT--PGWIWSALFLGVIFLLNY-ISVRGFGEAEYWF  159 (489)
T ss_pred             HcChHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHhhhc----CCCC--chHHHHHHHHHHHHHHHH-HcchhhhhhHHHH
Confidence            7888666 6666554443 22222222222222 2221    1221  122222222222222222 2344443333222


Q ss_pred             HHHHHHHHH--HHHHHHHhcC-CCCC--CCCCCccccCCc-hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688          183 LLLSLGYSF--LVVGACINAG-FSKN--APPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM  255 (264)
Q Consensus       183 ~~~~~~~~~--~ii~~~~~~~-~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m  255 (264)
                      .+.-+...+  +++......+ ...+  ....+++..+.+ ...+..++.+.....|+| +-......-+|+|||+ |++
T Consensus       160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~-r~i  238 (489)
T PRK10836        160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA-KNI  238 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH-HHH
Confidence            211111111  1111111111 0000  000011100001 112234555566667999 9999999999999996 488


Q ss_pred             eeeeecc
Q 024688          256 NRIQTFS  262 (264)
Q Consensus       256 ~~~~~~~  262 (264)
                      +|+...+
T Consensus       239 PrAi~~~  245 (489)
T PRK10836        239 PRAVRQV  245 (489)
T ss_pred             HHHHHHH
Confidence            8876543

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.80  E-value=2.6e-07  Score=83.64  Aligned_cols=211  Identities=11%  Similarity=0.139  Sum_probs=124.0

Q ss_pred             CchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCc
Q 024688           29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (264)
Q Consensus        29 ~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (264)
                      -|.++.++.++++++|+|++.+|....+.+---+.+..++.+++......++.+..++.  ++ +  +..+..++.+||.
T Consensus         3 is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~--p~-~--~~~~~~~~~~Gk~   77 (359)
T TIGR00912         3 ISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF--PE-K--NFSEILSKYLGKI   77 (359)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC--CC-C--CHHHHHHHHhhHH
Confidence            46788999999999999999999987764433444556667777777788888877763  22 2  8999999999995


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHH
Q 024688          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG  188 (264)
Q Consensus       109 ~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~  188 (264)
                      +| .+..+....+....+.......++.+....-   |+.+  ... ..+..+++.-....+.++....++.+-....+.
T Consensus        78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~tp--~~~-~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~  150 (359)
T TIGR00912        78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYLL---PRTP--IIV-IIILIIIVSIYIVRKGIEVLLRTAEILLIIFLI  150 (359)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCC--HHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            45 7777776666666665555566666654321   2222  111 222222222223345677777777666543333


Q ss_pred             H-HHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHH-HHHHHHh-ccCchHHHHHhccccccccceeeeec
Q 024688          189 Y-SFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSI-SIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTF  261 (264)
Q Consensus       189 ~-~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~  261 (264)
                      . .+++......+        .|.+ ..+--+.+..+...+. +...++| +...+..+..++|||+  +.+|+...
T Consensus       151 ~~~~il~~~~~~~--------~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~  217 (359)
T TIGR00912       151 LFILVLILLAPKL--------GNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK--KIKKSIIK  217 (359)
T ss_pred             HHHHHHHHHhccc--------ccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh--hhHHHHHH
Confidence            2 11121111111        1111 1000011122444333 4778899 8888888888888864  56666543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.79  E-value=5.7e-07  Score=84.54  Aligned_cols=224  Identities=10%  Similarity=0.030  Sum_probs=130.4

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (264)
                      +|+-+.++.....++.++|+|++..| .+.+.+|....++..++.+++......-+.|.....|+.+.   .|..-+++.
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG---~~~~~~~~~   77 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG---SFATYASRF   77 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHH
Confidence            35667889999999999999999876 45556664333555666667777777777777666442111   577788899


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 024688          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (264)
Q Consensus       105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~  184 (264)
                      +|+++| +++.....+.....+.+.....+..+....    +  ......|..+..++...+ -.+..+..+.++.+...
T Consensus        78 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~i-n~~gv~~~~~~~~~~~~  149 (478)
T TIGR00913        78 VDPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWT----D--KVNPAVWIAIFYVFIVII-NLFGVKGYGEAEFWFSS  149 (478)
T ss_pred             cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C--CCCHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHH
Confidence            999766 788877777666666666666666655332    1  122233333333333333 23455666655544432


Q ss_pred             HHHHHHHH--HHHH-HHhcCCCCCCCCCCc----cccC--Cc--hhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccc
Q 024688          185 LSLGYSFL--VVGA-CINAGFSKNAPPKDY----SLES--SK--SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGH  252 (264)
Q Consensus       185 ~~~~~~~~--ii~~-~~~~~~~~~~~~~~~----~~~~--~~--~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~  252 (264)
                      .-+..++.  ++.. ....+..+. .....    +...  +.  ...+.++..++....|+| |-......-+|+|||+ 
T Consensus       150 ~ki~~l~~~ii~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~-  227 (478)
T TIGR00913       150 IKILAIIGFIILSIILNCGGGPNH-GYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR-  227 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCC-CCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh-
Confidence            22211111  1111 111111100 00000    0000  00  112346788999999999 9999999999999996 


Q ss_pred             ccceeeeecc
Q 024688          253 LEMNRIQTFS  262 (264)
Q Consensus       253 ~~m~~~~~~~  262 (264)
                      |+++|+...+
T Consensus       228 r~iPrai~~~  237 (478)
T TIGR00913       228 KSIPRAAKRT  237 (478)
T ss_pred             hHHHHHHHHH
Confidence            4788776543

>PRK15049 L-asparagine permease; Provisional

Probab=98.76  E-value=1.2e-06  Score=83.02  Aligned_cols=225  Identities=10%  Similarity=0.093  Sum_probs=123.5

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      .+|+-+.++..+..++.++|+|++..|. +++.+|- .+++..++.+++....+.-+.|.....|..|    ..-.-+++
T Consensus        26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG----g~y~y~~~  100 (499)
T PRK15049         26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG----SFVSYARE  100 (499)
T ss_pred             hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence            5677789999999999999999988887 6677775 4566666677777777777788766654433    55566688


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .+|+++| +++.....+.....+..-....+..+... ..+   .....+.+.++..++...+. .+..+....+.....
T Consensus       101 ~~G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~---~~~~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~  174 (499)
T PRK15049        101 FLGEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAF---GGVPQWVFALAALTIVGTMN-MIGVKWFAEMEFWFA  174 (499)
T ss_pred             HhCcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC---CCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            9999655 77777665544333333232333332211 111   11222222222333333332 234555555544433


Q ss_pred             HHHHHHHHHHHHHH---HhcCCCCCCCCCCccc-c--CC-chhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688          184 LLSLGYSFLVVGAC---INAGFSKNAPPKDYSL-E--SS-KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM  255 (264)
Q Consensus       184 ~~~~~~~~~ii~~~---~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m  255 (264)
                      +.-+..++..++..   ...+...+........ .  +. ....+..++.++....|+| |-..+...-+|+|||++ ++
T Consensus       175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r-~i  253 (499)
T PRK15049        175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT-MV  253 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh-HH
Confidence            22222212111111   1111100000000100 0  00 0112234556677899999 99999999999999964 78


Q ss_pred             eeeeec
Q 024688          256 NRIQTF  261 (264)
Q Consensus       256 ~~~~~~  261 (264)
                      +|+...
T Consensus       254 PrAi~~  259 (499)
T PRK15049        254 PKAINS  259 (499)
T ss_pred             HHHHHH
Confidence            777653

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.74  E-value=2.3e-06  Score=80.04  Aligned_cols=222  Identities=13%  Similarity=0.112  Sum_probs=125.9

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      .+|+-+.++..+..+++++|+|++.+|.. .+.+|. ...+..++.+++......-+.|...+.|..|    ..-+-+++
T Consensus         7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G----g~y~y~~~   81 (457)
T PRK10580          7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS----SFSRYAQE   81 (457)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence            46778899999999999999999999877 455665 4566666777777777777888776654333    33445688


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .+||.+| +++.....+.....+.......+..++..+    ++  .....+.++..++..-+. .+..+....+..+..
T Consensus        82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~l~~~ln-~~gv~~~~~~~~~~~  153 (457)
T PRK10580         82 NLGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWF----PT--VPHWIWVLSVVLIICAVN-LMSVKVFGELEFWFS  153 (457)
T ss_pred             HcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC--CChHHHHHHHHHHHHHHH-HccchhHHHHHHHHH
Confidence            8999655 777776665554444444444444444332    22  122233333333333332 334555555554333


Q ss_pred             HHHHHHHHHHHHHH----HhcCCCCCCCC-CCccccC-Cc-hhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccc
Q 024688          184 LLSLGYSFLVVGAC----INAGFSKNAPP-KDYSLES-SK-SARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEM  255 (264)
Q Consensus       184 ~~~~~~~~~ii~~~----~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m  255 (264)
                      ...+..+++.++..    +......+.+. .+....+ .. ...+.++..++....|+| |-......-+|+|||+ |+.
T Consensus       154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~-k~i  232 (457)
T PRK10580        154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE-KSI  232 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-hHH
Confidence            22222111111111    11100000000 0000110 00 112236778899999999 9999999999999997 467


Q ss_pred             eeeee
Q 024688          256 NRIQT  260 (264)
Q Consensus       256 ~~~~~  260 (264)
                      +|+..
T Consensus       233 PrAi~  237 (457)
T PRK10580        233 PRAIN  237 (457)
T ss_pred             HHHHH
Confidence            77654

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.70  E-value=1.8e-06  Score=81.65  Aligned_cols=228  Identities=10%  Similarity=0.043  Sum_probs=123.1

Q ss_pred             eeccCCchHHHHHHHHhhhhhhhhhhHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-~~~~G~v-~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~  101 (264)
                      ..+|+-+.++.....+++++|+|++..|.. ...+|-. ...+..++.+++.......+.|.....|+.|.    .-.-.
T Consensus        39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG----~y~~~  114 (501)
T TIGR00911        39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG----EYNYI  114 (501)
T ss_pred             ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----hhhhH
Confidence            357788899999999999999999999876 4556643 22344455666667777777777666554432    22234


Q ss_pred             HHHhCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHH-HhhcccCCCCchhhHHHHH---HHHHHHHHhcCCCcchhh
Q 024688          102 ADVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQI-MYSDLYPNGSLKLYEFIAM---VTVVMIVLSQLPTFHSLR  176 (264)
Q Consensus       102 ~~~~G~~~g~~~~~i~i~~-~~~g~~i~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~i---~~~i~~pls~~r~l~~l~  176 (264)
                      ++.+|+.+| ++....... ...+.+..+....++.+.. ++.    +.........++   ..++...+ -.+.++...
T Consensus       115 ~~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~----~~~~~~~~~~~i~~~~i~~~~~l-n~~Gvk~~~  188 (501)
T TIGR00911       115 LEVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFP----DCEVPEWAIRLVAVLCVLLLTLV-NCLSVKWAT  188 (501)
T ss_pred             HhHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHHHHHHHH-HHhhhHHHH
Confidence            568999766 555544332 2223344444444554322 222    111111111111   12222222 234566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688          177 HINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE  254 (264)
Q Consensus       177 ~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~  254 (264)
                      +++.+.....+..+++.++..+.....++....+.+ ..........++..++....|+| |-.....+-+|+|||+ |+
T Consensus       189 ~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~-r~  267 (501)
T TIGR00911       189 RVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY-RT  267 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch-hh
Confidence            666655544433322222222221111110011111 11111112346778899999999 9999999999999996 47


Q ss_pred             ceeeeecc
Q 024688          255 MNRIQTFS  262 (264)
Q Consensus       255 m~~~~~~~  262 (264)
                      .+|+...+
T Consensus       268 iPrAi~~s  275 (501)
T TIGR00911       268 LPIAIIIS  275 (501)
T ss_pred             hHHHHHHH
Confidence            77775543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.70  E-value=2.1e-06  Score=79.94  Aligned_cols=226  Identities=13%  Similarity=0.071  Sum_probs=124.5

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~-~~~G~v-~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (264)
                      .+|+-+.+++....++.++|+|++..|... ...|-. ..++..++.+++.........|.....|+.|. ...|.   +
T Consensus         6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y~---~   81 (445)
T PRK11357          6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVYL---K   81 (445)
T ss_pred             ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceeeH---H
Confidence            478888999999999999999999999874 445633 34444555666666677777776666554443 23554   4


Q ss_pred             HHhCCchhHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688          103 DVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (264)
Q Consensus       103 ~~~G~~~g~~~~~i~i~-~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~  181 (264)
                      +.+|+.+| +++....+ .........+....++.+....    +........ ..+..+.++-..-.+..+...+++.+
T Consensus        82 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~----~~~~~~~~~-~~~~~~~~~~~ln~~gv~~~~~v~~~  155 (445)
T PRK11357         82 NAGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLT----PIDPLLGKF-IAAGLIIAFMLLHLRSVEGGAAFQTL  155 (445)
T ss_pred             HhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCchHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            67998766 66666533 2233333445555555554332    111111111 11111111111223456656666555


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeee
Q 024688          182 SLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQT  260 (264)
Q Consensus       182 ~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~  260 (264)
                      ..+..+..++++++..+.....++..+ ...........+..+..++....|+| +-......-+|+|||+ |+++|+..
T Consensus       156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-r~iP~Ai~  233 (445)
T PRK11357        156 ITIAKIIPFTIVIGLGIFWFKAENFAA-PTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG-KTMPRALI  233 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccccC-CCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc-ccchHHHH
Confidence            554333322222222221110111000 00000001111335778889999999 9999999999999996 48888765


Q ss_pred             cc
Q 024688          261 FS  262 (264)
Q Consensus       261 ~~  262 (264)
                      .+
T Consensus       234 ~~  235 (445)
T PRK11357        234 GS  235 (445)
T ss_pred             HH
Confidence            54

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.69  E-value=4.2e-07  Score=83.96  Aligned_cols=218  Identities=11%  Similarity=0.061  Sum_probs=124.1

Q ss_pred             chHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHcchhccccCcccccHHHHHHHHhCCc
Q 024688           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (264)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~-~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (264)
                      +++++....+++++|+|+...| .....|.. +.+..++.+.+. ........|...+.|+.|    ..-.-+++.+||+
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G----G~y~~~~~~~g~~   75 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG----GIYVWVSRAFGPF   75 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST----THHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC----eeeehhhhccccc
Confidence            5789999999999999999999 77777753 444444443333 445555556554433333    4556667889997


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHH--HHHHHHHHHhcCCCcchhhHHHHHHHHHH
Q 024688          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIA--MVTVVMIVLSQLPTFHSLRHINLVSLLLS  186 (264)
Q Consensus       109 ~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~--i~~~i~~pls~~r~l~~l~~~S~~~~~~~  186 (264)
                      +| +++.....+.....+.++.....+.+...+.   ++.........+  +..++..-+...+..|..++++.+.....
T Consensus        76 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  151 (426)
T PF13520_consen   76 WG-FIVGWLYWVAYILSLASVASSFASYLLSLFG---PDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIK  151 (426)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT---GGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ch-hcccceeEEEeeccccccccchhhhhhhccc---cccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhh
Confidence            66 7777777776666666676666666655442   111111111122  22222222223456777777776666555


Q ss_pred             HH-HHHHHHHHHHhcCCCCCCCC--CCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          187 LG-YSFLVVGACINAGFSKNAPP--KDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       187 ~~-~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      ++ .+++++...+.....+..+.  .+.+...+.  .+...+.+++...|+| |-.....+-+|+||   |+.+|+...+
T Consensus       152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~  226 (426)
T PF13520_consen  152 IVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS--GWPGFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPRAIIIS  226 (426)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS--SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHHHHHHH
T ss_pred             hhhhhhhheeEEEeeecccccccccccccccCCc--cccchhhHHHHHHhhcccccccccccccccc---hhheeecccc
Confidence            52 32233333333321111000  000000011  1114678899999999 99999999999887   5777776544

...

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.62  E-value=3.2e-06  Score=78.93  Aligned_cols=209  Identities=12%  Similarity=0.083  Sum_probs=118.3

Q ss_pred             HhhhhhhhhhhHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHHHHHH
Q 024688           39 TTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI  117 (264)
Q Consensus        39 ~~~~iG~GiL~LP~-a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~  117 (264)
                      +++++|+|++..|. +.+++|. .+++..++.+++....+..+.|...+.|+.|    ..-+-+++.+|+.+| .++...
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G----g~y~y~~~~~G~~~g-f~~gw~   77 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG----SFSTYADKAIGRWAG-YTIGWL   77 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHcChHHH-HHHHHH
Confidence            56899999999998 7778886 4677777778888888888888776654433    556666789999766 777766


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 024688          118 QTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC  197 (264)
Q Consensus       118 i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~~  197 (264)
                      ..+.....+.......+..+...    .++  .....+.++..+++..+. .+..+..+.+..+..+.-+...+..++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~  150 (446)
T PRK10197         78 YWWFWVLVIPLEANIAAMILHSW----VPG--IPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLG  150 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----ccc--CcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            65554444433333333333222    111  122222222333333333 33455555555444433333222222222


Q ss_pred             Hh--cCCCCCCCCCCc-ccc--CC-chhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeec
Q 024688          198 IN--AGFSKNAPPKDY-SLE--SS-KSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTF  261 (264)
Q Consensus       198 ~~--~~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~  261 (264)
                      +.  .+.....+.... +..  +. ....+.++..++....|+| |-......-+|+|||+ |+++|+.+.
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~-r~iPrai~~  220 (446)
T PRK10197        151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE-KHIVRATNS  220 (446)
T ss_pred             HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-hhHHHHHHH
Confidence            21  111100000000 000  00 0112336889999999999 9999999999999996 588887543

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.49  E-value=4.1e-06  Score=84.58  Aligned_cols=228  Identities=14%  Similarity=0.097  Sum_probs=136.1

Q ss_pred             ccCCchHHHHHHH-Hhhhhhhhhhh-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchh-ccccCcccccHHHHHH
Q 024688           26 ESKGEWWHAGFHL-TTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-CEKAGRRHIRFRELAA  102 (264)
Q Consensus        26 ~~~~s~~~a~~~l-~~~~iG~GiL~-LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~-~~~~~~~~~sy~~l~~  102 (264)
                      .++-+++++++.- +.+++|+|+.- +++...++|...++++.++.++++..+..-+.+.... .++.|-   .|. ..+
T Consensus        75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y~-yis  150 (953)
T TIGR00930        75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AYY-LIS  150 (953)
T ss_pred             CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HHH-HHH
Confidence            3455688888877 99999999864 5677779998778888888889999998888887765 333332   343 345


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccC---CCCch-hhHHHHHHHHHHHHHhcCCCcchhhHH
Q 024688          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP---NGSLK-LYEFIAMVTVVMIVLSQLPTFHSLRHI  178 (264)
Q Consensus       103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~---~~~~~-~~~~~~i~~~i~~pls~~r~l~~l~~~  178 (264)
                      +.+|+.+| ..+.++..+.+..++..|.+-.++.+..++...+.   ..... ...+.++..+++..++ ...++...++
T Consensus       151 ralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~  228 (953)
T TIGR00930       151 RSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKA  228 (953)
T ss_pred             HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            67898666 77777777777777888888888888777643211   01111 1222222223333333 3355555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC---cc---ccC---Cchhhhh-hHHHHHHHHHHHh-ccCchHHHHHhc
Q 024688          179 NLVSLLLSLGYSFLVVGACINAGFSKNAPPKD---YS---LES---SKSARIF-SAFTSISIIAAIF-GNGILPEIQLQF  247 (264)
Q Consensus       179 S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~---~~---~~~---~~~~~~~-~~~~~~~~~~faf-~~~~~~~i~~~m  247 (264)
                      ..+..+..++.++.+++..+. ...+. +...   ++   +..   +...... .++..++++.+|| |......+-.|+
T Consensus       229 q~vl~vi~ll~ll~~iig~~~-~~~~~-~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl  306 (953)
T TIGR00930       229 QVLFLVIVLLSILNIFVGTII-PAFDK-PAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL  306 (953)
T ss_pred             HHHHHHHHHHHHHHHHheeee-cCCCC-CccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            555444323222222222211 11000 0000   00   000   0000111 2677888888899 999999999999


Q ss_pred             cccccccceeeeecc
Q 024688          248 LDIGHLEMNRIQTFS  262 (264)
Q Consensus       248 ~~p~~~~m~~~~~~~  262 (264)
                      |||+ |+++|++..+
T Consensus       307 KnP~-r~IPratl~a  320 (953)
T TIGR00930       307 KDPQ-KAIPKGTLLA  320 (953)
T ss_pred             cChh-hhhHHHHHHH
Confidence            9997 4777776544

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.44  E-value=5.4e-05  Score=71.24  Aligned_cols=229  Identities=12%  Similarity=0.021  Sum_probs=118.2

Q ss_pred             eeccCCchHHHHHHHHhhh-hhhhhhhHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAI-VGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~-iG~GiL~LP~a~~-~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~  101 (264)
                      +.+|+-+.++....-.+.+ +|.|+.++|..-. ..|- ..+...++.++.......-+.|...+.|..|.    .-.-+
T Consensus        10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG----~Y~~~   84 (475)
T TIGR03428        10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGA----IYQWS   84 (475)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----HHHHH
Confidence            4678888888877666653 7888888776554 5554 34445555566666666677777666554442    23335


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc---cc--CCC--Cch-hhHHHH--HHHHHHHHHhcCCC
Q 024688          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD---LY--PNG--SLK-LYEFIA--MVTVVMIVLSQLPT  171 (264)
Q Consensus       102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~---~~--~~~--~~~-~~~~~~--i~~~i~~pls~~r~  171 (264)
                      ++.+|+.+| +++.....+.....+.+........+..+...   ..  ++.  ... ...+.+  +..++..-+ -.+.
T Consensus        85 ~~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-n~~g  162 (475)
T TIGR03428        85 RRMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVI-NCIG  162 (475)
T ss_pred             HHHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHH-HHhh
Confidence            678898766 77777666655444434333444444333211   11  111  001 111111  111122222 2334


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccc-CCchhh-hhhHHHHHHHHHHHh-ccCchHHHHHhcc
Q 024688          172 FHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLE-SSKSAR-IFSAFTSISIIAAIF-GNGILPEIQLQFL  248 (264)
Q Consensus       172 l~~l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~faf-~~~~~~~i~~~m~  248 (264)
                      .|..+++..+..+..+...+++++.......+ + +...++.. ..+.+. ...+..+.....|+| |-.....+-+|+|
T Consensus       163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~-~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~k  240 (475)
T TIGR03428       163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQR-G-PGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETK  240 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-cceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhc
Confidence            55566665554443333222222222222111 0 11011100 001111 224556667788999 9999999999999


Q ss_pred             ccccccceeeeecc
Q 024688          249 DIGHLEMNRIQTFS  262 (264)
Q Consensus       249 ~p~~~~m~~~~~~~  262 (264)
                      ||+ |+.+|+...+
T Consensus       241 nP~-r~iPrai~~s  253 (475)
T TIGR03428       241 NPR-RVAPRTILTA  253 (475)
T ss_pred             Ccc-hhhhHHHHHH
Confidence            996 4777776543

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.44  E-value=2.4e-05  Score=72.77  Aligned_cols=225  Identities=13%  Similarity=0.115  Sum_probs=130.1

Q ss_pred             ccCCchHH-HHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688           26 ESKGEWWH-AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (264)
Q Consensus        26 ~~~~s~~~-a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (264)
                      +|+-+.++ ......+.++|.|++.+|......+ ....+..++.+++..+......|...+.|+.|    .+-+-+++.
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----G~y~~~~~~   85 (466)
T COG0531          11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG----GAYAYAKRA   85 (466)
T ss_pred             CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----Ceeeehhhh
Confidence            45555666 8888889999999999999998876 22222233334444444555555555433333    445566789


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccc--CCCCchhhHHHHHHHH--HHHHHhcCCCcchhhHHHH
Q 024688          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY--PNGSLKLYEFIAMVTV--VMIVLSQLPTFHSLRHINL  180 (264)
Q Consensus       105 ~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~--~~~~~~~~~~~~i~~~--i~~pls~~r~l~~l~~~S~  180 (264)
                      +|+++| +++.....+.......+.....++.+...+....  ....   ..+..+..+  .++-+.-.+..+...++..
T Consensus        86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~  161 (466)
T COG0531          86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGP---LLIILIALALIALLTLLNLRGIKASAKINS  161 (466)
T ss_pred             cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCc---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            998766 8888888888888878888887776666654210  0111   222222222  2222223445666666665


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeee
Q 024688          181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQ  259 (264)
Q Consensus       181 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~  259 (264)
                      +..+..+...+++.............  ...............+..++....++| |-......-+|+|||++ +.+|+.
T Consensus       162 ~~~~~~i~~~i~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r-~ip~ai  238 (466)
T COG0531         162 IITILKIIILLIFIILGLFAFGFSNG--NLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR-TIPRAI  238 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccc--ccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc-cccHHH
Confidence            55554444433333333332211110  011110001111225788999999999 99999999999999865 577765


Q ss_pred             ecc
Q 024688          260 TFS  262 (264)
Q Consensus       260 ~~~  262 (264)
                      -.+
T Consensus       239 i~~  241 (466)
T COG0531         239 ILS  241 (466)
T ss_pred             HHH
Confidence            443

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.36  E-value=0.0001  Score=65.73  Aligned_cols=199  Identities=15%  Similarity=0.152  Sum_probs=119.0

Q ss_pred             CchHHHHHHHHhhhhhhhhhhHHHHHHhh---ChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           29 GEWWHAGFHLTTAIVGPTILTLPYVFRGL---GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        29 ~s~~~a~~~l~~~~iG~GiL~LP~a~~~~---G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      -|..|..+.+..+.+|+|++.+|....+.   ||+..+    +.++....-.+++.+..++.  +   ..|..|..++.+
T Consensus         2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~l----l~~~~~l~~~~l~~~l~~~~--p---~~~l~~~~~~~~   72 (320)
T PF03845_consen    2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVL----LGGLIGLLLALLIYYLLKRF--P---GKTLVEISEKLF   72 (320)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH----HHHHHHHHHHHHHHHHHHHC--C---CCCHHHHHHHHh
Confidence            35778999999999999999999998776   464332    33333344444555555542  2   239999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~  185 (264)
                      ||.+| ++..+...++.+......+...+|.++..+-   |+.+  .. .+....+++.-....+.++.+...+.+-...
T Consensus        73 Gk~lg-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l---p~TP--~~-~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~  145 (320)
T PF03845_consen   73 GKWLG-KIINLLYILYFLLISALVLREFSEFIKTYLL---PETP--IW-VIILLFLLVAAYAARKGIEVIARVAEILFPI  145 (320)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcCC--HH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            99555 7777777777777777777777777766532   2221  11 1222233333334456777777765554443


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcc-ccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccc
Q 024688          186 SLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIG  251 (264)
Q Consensus       186 ~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~  251 (264)
                      .+...+.+......+        .|++ ..+--+.+..+++.+.....+.| +-..+.-+...+|+|+
T Consensus       146 ~~i~~~~i~~~~~~~--------~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~  205 (320)
T PF03845_consen  146 FLILLLLILLLSIPN--------IDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK  205 (320)
T ss_pred             HHHHHHHHHHHhccc--------CCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            333322222222211        1221 11111122346777777777888 7777888888888874

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.29  E-value=2.5e-05  Score=73.00  Aligned_cols=223  Identities=11%  Similarity=0.113  Sum_probs=151.1

Q ss_pred             eccCCchHHHHHHHHhhhhhhhh-hhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTI-LTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      .+|+-...+-.+.-+...+|+|. ++.-.+++++|-...++.-++++...++.+.-|.|.+...|..|    +|..-+.+
T Consensus        42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG----sF~~ya~r  117 (541)
T COG0833          42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG----SFSTYATR  117 (541)
T ss_pred             hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----chhhhhhh
Confidence            56777777888999999999997 47889999999998999999999999999999999887754332    58887888


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhc--CCCcchhh-HHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ--LPTFHSLR-HINL  180 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~--~r~l~~l~-~~S~  180 (264)
                      .-++.+| ..+...-.++..-++-.-+...+..++...    |+. .+...|+.++.++++.+.+  .|-..+.- ++|.
T Consensus       118 fvdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~----p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~  191 (541)
T COG0833         118 FVDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWF----PDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS  191 (541)
T ss_pred             hcCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhc----CCC-CChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence            8888777 666666666555555556666655555543    232 6778888888888877765  44454443 4566


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccC---CchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688          181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLES---SKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN  256 (264)
Q Consensus       181 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~  256 (264)
                      +=++..+.+.++.++. +..+.+++ .........   .-...+.++...+-+..|+| +.-.+----.|-+||+ |.++
T Consensus       192 iKV~~ii~Fii~gii~-~~Gg~~~~-~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~-K~iP  268 (541)
T COG0833         192 IKVLTIIGFIILGIII-ICGGGPTH-GYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR-KSIP  268 (541)
T ss_pred             HHHHHHHHHHHHHHHH-hcCCCCCC-CCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch-hhhH
Confidence            6665554444333322 11122111 111111111   11223557888888999999 9988888889999995 5777


Q ss_pred             eeee
Q 024688          257 RIQT  260 (264)
Q Consensus       257 ~~~~  260 (264)
                      |+.|
T Consensus       269 kAik  272 (541)
T COG0833         269 KAIK  272 (541)
T ss_pred             HHHH
Confidence            7655

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.10  E-value=0.0003  Score=66.27  Aligned_cols=231  Identities=11%  Similarity=-0.014  Sum_probs=113.6

Q ss_pred             eccCCchHHHHHHHHhhhhh--hhhh-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVG--PTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG--~GiL-~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~  101 (264)
                      .+|+-+.++....-.. .+|  .|+. .++.+.+..|-...++..++.+++......-+.|.....|+.|    ..-.-+
T Consensus        10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G----g~y~~~   84 (482)
T TIGR00907        10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG----GQYFWS   84 (482)
T ss_pred             eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc----cHHHHH
Confidence            5676677766554444 444  4543 3455677778655556666677777777777788766655444    333334


Q ss_pred             HHHhCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCC--CCchhhHHHHHHHHHHHH--HhcCCCcch
Q 024688          102 ADVLGSGWM---FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN--GSLKLYEFIAMVTVVMIV--LSQLPTFHS  174 (264)
Q Consensus       102 ~~~~G~~~g---~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~~i~~p--ls~~r~l~~  174 (264)
                      ++.+|+++|   .+++.....+.....+.+.....++.+.......+++  .....+...++..++++.  +...+..|.
T Consensus        85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~  164 (482)
T TIGR00907        85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKW  164 (482)
T ss_pred             HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence            556664433   2555555555555555555555556555543322222  111111111222211111  112233444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccc---cCCc---hhhhhhHHHHHHHHHHHh-ccCchHHHHHhc
Q 024688          175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSL---ESSK---SARIFSAFTSISIIAAIF-GNGILPEIQLQF  247 (264)
Q Consensus       175 l~~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m  247 (264)
                      ++....+..+..+...+++++.......++.. +.++..   .+..   .+..+....++....|+| +-......-+|+
T Consensus       165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~  243 (482)
T TIGR00907       165 LPRITSSAAYWSLLGFLTICITLLACKSPKFN-DGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI  243 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-ChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence            44444433322222222111111111111000 011111   1000   011124555666678999 999999999999


Q ss_pred             cccccccceeeeecc
Q 024688          248 LDIGHLEMNRIQTFS  262 (264)
Q Consensus       248 ~~p~~~~m~~~~~~~  262 (264)
                      |||+ |+++|+...+
T Consensus       244 knP~-r~iP~Ai~~s  257 (482)
T TIGR00907       244 ENPE-VVGPRAIIGA  257 (482)
T ss_pred             CChh-hhcCHHHHHH
Confidence            9995 5888877654

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.01  E-value=0.00097  Score=63.12  Aligned_cols=223  Identities=8%  Similarity=0.048  Sum_probs=107.3

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHcchhccc-cCcccccHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEK-AGRRHIRFRELAAD  103 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~-~~s~~lL~~~~~~~~~-~~~~~~sy~~l~~~  103 (264)
                      +|+-++++-+...+++++|.+  .+|.+++..|.. +++..++.+++. .-....+.|.....|+ .|    .--.=.++
T Consensus         6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~~   78 (496)
T PRK15238          6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMNK   78 (496)
T ss_pred             cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHHH
Confidence            566789999999999999987  679888888863 444444444332 2344445665554432 23    22234467


Q ss_pred             HhCCchhHHHHHHHHHHHHHHH---HHH-------HHHHhhhhHHHHhhcccCCCCchhh-HHHHHHHHH--HHHHhcCC
Q 024688          104 VLGSGWMFYFVIFIQTAINTGV---GIG-------AILLAGECLQIMYSDLYPNGSLKLY-EFIAMVTVV--MIVLSQLP  170 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~---~i~-------y~i~~~~~l~~~~~~~~~~~~~~~~-~~~~i~~~i--~~pls~~r  170 (264)
                      .+|+++|. ++...........   ..+       +.++ +....+.   ++ ....... ...++..+.  ++-+...|
T Consensus        79 ~~G~~~gf-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~~~~~~a~~~~~~~t~vn~~  152 (496)
T PRK15238         79 SVGPKFAF-IGTFMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQT---WH-FLGLNSTQVVGILAVIWMILVTFVASK  152 (496)
T ss_pred             HcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Ccchhhh---hh-hhcccchHHHHHHHHHHHHHHHHHHcc
Confidence            88988874 4333222211111   111       1111 1111000   00 0011111 111111111  22223456


Q ss_pred             CcchhhHHHHHHHHHHHHH----HHHHHHHHHhcCCCCCCCC--CCccc-cCCchhhhhhHHHHHHHHHHHh-ccCchHH
Q 024688          171 TFHSLRHINLVSLLLSLGY----SFLVVGACINAGFSKNAPP--KDYSL-ESSKSARIFSAFTSISIIAAIF-GNGILPE  242 (264)
Q Consensus       171 ~l~~l~~~S~~~~~~~~~~----~~~ii~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~faf-~~~~~~~  242 (264)
                      .++..++++.++....+..    +++.+......+.+...+.  .++.. .++.......+..++....|+| +......
T Consensus       153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~  232 (496)
T PRK15238        153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG  232 (496)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            7777777776544322221    1111111111111100000  01100 0011101134667788889999 9999999


Q ss_pred             HHHhccccccccceeeeecc
Q 024688          243 IQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       243 i~~~m~~p~~~~m~~~~~~~  262 (264)
                      .-+|+|||+ |+.+|+...+
T Consensus       233 ~a~E~~~p~-~~~p~ai~~~  251 (496)
T PRK15238        233 LVDKTENPE-KNFPKGIIIA  251 (496)
T ss_pred             HHHhccCCC-ccccHHHHHH
Confidence            999999996 4888876554

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=97.96  E-value=0.0015  Score=60.19  Aligned_cols=219  Identities=15%  Similarity=0.218  Sum_probs=136.6

Q ss_pred             eccCCchHHHHHHHHhhhhhhhh-hhHHHHHHhhChhHHHHH-HHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTI-LTLPYVFRGLGWGLGFTC-LTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~a~~~~G~v~g~i~-l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (264)
                      .+|+-+..+--+.-+...+|+|. |+--.+.+.+|  +++++ -.+.+++...=+..|.|...+.  +.+.  ||.+.++
T Consensus        11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~--p~~g--SF~~~a~   84 (462)
T COG1113          11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVAN--PVSG--SFSDYAR   84 (462)
T ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCC--cHHHHHH
Confidence            35777788888999999999996 34556677777  33332 3344555555566666655542  4444  9999999


Q ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHH--HhcCCCcchhh-HHH
Q 024688          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIV--LSQLPTFHSLR-HIN  179 (264)
Q Consensus       103 ~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~p--ls~~r~l~~l~-~~S  179 (264)
                      +.+|+ |..+++...-.+.....+++-+..++..++..+.    |  ...+.+.++..+++.-  |...|...++- |++
T Consensus        85 ~~lG~-~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP----~--vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA  157 (462)
T COG1113          85 KYLGP-WAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP----D--VPQWVFALAAVVLLLAVNLISVKVFGELEFWFA  157 (462)
T ss_pred             HHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 4559999999999999999999999999888764    2  2344444444433333  33345555544 345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-cc---CCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhcccccccc
Q 024688          180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLE  254 (264)
Q Consensus       180 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~  254 (264)
                      ++=+...+...++.++. +..+.+.+......+ +.   +--...+.+++.++-+.+||| +.-.+=.--+|-|||++ .
T Consensus       158 lIKV~aIi~~Iv~G~~l-l~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k-~  235 (462)
T COG1113         158 LIKVAAIIAFIVVGIVL-LFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK-A  235 (462)
T ss_pred             HHHHHHHHHHHHHHHHH-HhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh-H
Confidence            55554333333332222 111221110001111 11   001123457899999999999 99999999999999973 5


Q ss_pred             ceee
Q 024688          255 MNRI  258 (264)
Q Consensus       255 m~~~  258 (264)
                      ++|+
T Consensus       236 ipkA  239 (462)
T COG1113         236 IPKA  239 (462)
T ss_pred             HHHH
Confidence            5554

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.91  E-value=4.6e-05  Score=71.66  Aligned_cols=217  Identities=12%  Similarity=0.104  Sum_probs=117.1

Q ss_pred             Hhhhhhhhhh-hHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchhHHHHHHH
Q 024688           39 TTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI  117 (264)
Q Consensus        39 ~~~~iG~GiL-~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~  117 (264)
                      +..++|+|++ +.+.+..+.|.....+..++.+++......-+.+..++.|+.|    ++-..+++.+|+++| ..+.+.
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G----g~y~y~~~~lg~~~G-f~~gw~   81 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG----GFYAYASRGLGPALG-FAAGWA   81 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc----chhhhhhhccCCcCC-ceeeHH
Confidence            4566776654 4567888888866777777788888888888888877754333    555667788898766 555555


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHH--hhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 024688          118 QTAINTGVGIGAILLAGECLQIM--YSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVG  195 (264)
Q Consensus       118 i~~~~~g~~i~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~  195 (264)
                      ..+.............+..++..  .......+.+.. .+..++.+++..+.. ...+..+.+...-....+...+..++
T Consensus        82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li~~ii  159 (478)
T PF00324_consen   82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALIAFII  159 (478)
T ss_pred             HHHHHHHHHHhhhhhhhhhhccccccccccccccccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhhhhhh
Confidence            44444444444444444444433  111100011111 123333333333332 23444444333322222222222222


Q ss_pred             HH-HhcCCCCCCCCC-----Ccc----ccC----CchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeee
Q 024688          196 AC-INAGFSKNAPPK-----DYS----LES----SKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQT  260 (264)
Q Consensus       196 ~~-~~~~~~~~~~~~-----~~~----~~~----~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~  260 (264)
                      .. +......+..+.     +..    .++    ++...+.++..++....++| +-......-+|.|||+ |+++|++.
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~-k~IPra~~  238 (478)
T PF00324_consen  160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR-KTIPRATL  238 (478)
T ss_pred             hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch-hhhhhHhh
Confidence            22 111111010001     000    110    01112447899999999999 9999999999999995 58888877


Q ss_pred             ccc
Q 024688          261 FSR  263 (264)
Q Consensus       261 ~~~  263 (264)
                      .++
T Consensus       239 ~~~  241 (478)
T PF00324_consen  239 LSV  241 (478)
T ss_pred             hhh
Confidence            653

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.88  E-value=0.00094  Score=63.44  Aligned_cols=38  Identities=5%  Similarity=0.017  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          224 AFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       224 ~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      ....+..+.|+| |-......-+|+|||+ |+.+|+...+
T Consensus       196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~-r~~PrAi~~~  234 (507)
T TIGR00910       196 TLVVFVAFIGAYMGVEASASHINELENPG-RDYPLAMILL  234 (507)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHccCCc-ccccHHHHHH
Confidence            344555568999 9999999999999996 4788776544

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=97.73  E-value=0.017  Score=53.88  Aligned_cols=208  Identities=13%  Similarity=0.151  Sum_probs=110.3

Q ss_pred             hHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchh
Q 024688           31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM  110 (264)
Q Consensus        31 ~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g  110 (264)
                      |+++.+|+.+-..|+....+     ..++..+++..++-.++...-..+....-.|   .   ..++.-+.|..||+ +|
T Consensus        23 W~~~~~~v~~~~~Ga~l~~~-----GLs~~~ailai~lG~~i~~~~~~l~~~~G~r---~---Gl~~~v~sR~~FG~-~G   90 (442)
T TIGR00800        23 WLGAAFNIATWAIGALGLPL-----GLSWWQSVIAIILGNLLGGIFVALNSRAGAK---Y---GLPFPVLSRASFGI-YG   90 (442)
T ss_pred             HHHHhhhHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH---h---CCCcchhhhhhhhh-hH
Confidence            55556666666666543221     1333344444333333322222223322222   2   35888899999999 49


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCC-Cc------hhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          111 FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SL------KLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       111 ~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-~~------~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      .++..++..+...|=........++.+..++....+.. ..      ....+.+++.++.+++....-.+-.++....+.
T Consensus        91 s~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~  170 (442)
T TIGR00800        91 SLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAV  170 (442)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            99999999999999888888999988888776643321 01      122223455566666655555555555555555


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh--ccCchHHHHHhcccccc
Q 024688          184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQLQFLDIGH  252 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~~m~~p~~  252 (264)
                      ...+....+.+......+...+.  .+.....++....+.+..++....=.+  .-.+.++.-+.+|+|+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~  239 (442)
T TIGR00800       171 VPPFAAFGMLIWALSKAHGKGPL--GELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKT  239 (442)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcc--ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc
Confidence            43222222222221221100000  000000011222345555655533333  55699999999999764

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.47  E-value=0.0093  Score=56.11  Aligned_cols=32  Identities=6%  Similarity=-0.067  Sum_probs=26.3

Q ss_pred             HHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          230 IIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       230 ~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      .+.|+| |-......-+|+|||++ +.+|+...+
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~~  234 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDK-NYPIAILIA  234 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCccc-chhHHHHHH
Confidence            457899 99999999999999964 888876654

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=97.45  E-value=0.014  Score=52.58  Aligned_cols=114  Identities=15%  Similarity=0.089  Sum_probs=83.2

Q ss_pred             ccccCCCCccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHH----HHHHHHHHHHHHcchhcc
Q 024688           13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG----FVTFYSYYLMSKVLDHCE   88 (264)
Q Consensus        13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~----~~~~~s~~lL~~~~~~~~   88 (264)
                      .+..+||.|    --..+.+.-.-+=..++-|+|-+-=|-.-.+.||+++.+++++=+    .+-.|....+.  .|+  
T Consensus        40 A~~~~DGvD----YvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S--vR~--  111 (376)
T PF02554_consen   40 AHTMNDGVD----YVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS--VRH--  111 (376)
T ss_pred             eeECCCCCC----CCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh--hcC--
Confidence            444666654    223335566777788999999999999999999999998876643    34444443332  222  


Q ss_pred             ccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 024688           89 KAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQI  139 (264)
Q Consensus        89 ~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~  139 (264)
                       . -+  |..|++++..|++ +|.+..+...+.+.....++....++.+..
T Consensus       112 -~-G~--Si~~i~~~~lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~  157 (376)
T PF02554_consen  112 -K-GK--SIGEIAGKYLGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVN  157 (376)
T ss_pred             -C-Cc--cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             2 23  9999999999995 889999999988888888887777776644

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=97.39  E-value=0.007  Score=53.58  Aligned_cols=131  Identities=15%  Similarity=0.201  Sum_probs=89.3

Q ss_pred             HHHHHHHhhhhhhhhhhHHHH---HHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCch
Q 024688           33 HAGFHLTTAIVGPTILTLPYV---FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW  109 (264)
Q Consensus        33 ~a~~~l~~~~iG~GiL~LP~a---~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~  109 (264)
                      .-.|..+.+++|+|-=+===.   |.+-|+ .|....++.+++-..++..+.+..++   .+.+  +|+|+-+..+|+++
T Consensus         7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~---f~a~--~y~~~~~~v~~~~~   80 (349)
T COG3949           7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKK---FNAT--SYREILKYVSGPKF   80 (349)
T ss_pred             HHHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH---hccc--chHHHHHHHhhHHH
Confidence            345666778999884331111   233343 46666777777777788888887776   3334  99999999999987


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHH--HHHHHHHHHHhcCCCcchhhHHH
Q 024688          110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFI--AMVTVVMIVLSQLPTFHSLRHIN  179 (264)
Q Consensus       110 g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~--~i~~~i~~pls~~r~l~~l~~~S  179 (264)
                      + ++.|+.+.+.++++++..+-=.|..+++.+         +...|+  ++...++.-+-++++.+.+-.+.
T Consensus        81 ~-ki~d~~iif~lf~~~vVM~AGags~~~e~~---------~lP~wiGali~i~~v~i~lfl~~vegi~tvn  142 (349)
T COG3949          81 A-KIIDIIIIFFLFSTAVVMLAGAGSLLEEMF---------GLPYWIGALIIILLVLILLFLGRVEGIITVN  142 (349)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhccchhHHHHHh---------CccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence            7 888999999999999888777777787764         233443  34444455555667666665544

>PRK11375 allantoin permease; Provisional

Probab=97.30  E-value=0.15  Score=48.30  Aligned_cols=221  Identities=11%  Similarity=0.014  Sum_probs=107.9

Q ss_pred             ccCCCCccceeccCCc-------hHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhc
Q 024688           15 RDSDAGAAFVLESKGE-------WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC   87 (264)
Q Consensus        15 ~~~~~~~~~~~~~~~s-------~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~   87 (264)
                      ..+|-.-...++|+.+       |+...+|+.+-.++.|.+++     ..++..+++..++-.++...-+.+..+.-.  
T Consensus        13 ~n~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~-----GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~--   85 (484)
T PRK11375         13 YSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFIL-----GLSTFSIMLAIILSAFFIAAVMVLNGAAGS--   85 (484)
T ss_pred             cCCCCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence            3445444445677665       44445555554444454432     233334444433333332222223333222  


Q ss_pred             cccCcccccHHHHHHHHhCCchhHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhcccC------C----CCchh--hH
Q 024688           88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYP------N----GSLKL--YE  154 (264)
Q Consensus        88 ~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~-~~~~g~~i~y~i~~~~~l~~~~~~~~~------~----~~~~~--~~  154 (264)
                          +...++.-+.|..||++ |.++..+... +..+|=-.....+.++.+..++....|      +    .+...  ..
T Consensus        86 ----~~Gl~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i  160 (484)
T PRK11375         86 ----KYGVPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLI  160 (484)
T ss_pred             ----ccCCChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHH
Confidence                22469999999999995 8777777763 444455455556677777766544321      1    11222  22


Q ss_pred             HHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCccccC--CchhhhhhHHHHHHHH
Q 024688          155 FIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINA-GFSKNAPPKDYSLES--SKSARIFSAFTSISII  231 (264)
Q Consensus       155 ~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  231 (264)
                      ..+++.++.+++.. ...+.+++++.++........+.+.+..+.+ +..   +..+....+  +.....+.+..++...
T Consensus       161 ~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~i~~v  236 (484)
T PRK11375        161 TFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIG---PIFDYIPSGIQKAENSGFLFLVVINAV  236 (484)
T ss_pred             HHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---hhhccCcccccCCcchHHHHHHHHHHH
Confidence            22355566677765 4567777777666654333222222222222 211   001111110  1111223444444333


Q ss_pred             HHHh--ccCchHHHHHhccccc
Q 024688          232 AAIF--GNGILPEIQLQFLDIG  251 (264)
Q Consensus       232 ~faf--~~~~~~~i~~~m~~p~  251 (264)
                      +=++  .-.+.|+.-+..|+|.
T Consensus       237 ig~~~~~~~~~~D~tRy~k~~~  258 (484)
T PRK11375        237 VAVWAAPAVSASDFTQNAHSFR  258 (484)
T ss_pred             HHHHHHHHccccchhcccCChh
Confidence            3334  3348999999988874

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0014  Score=62.60  Aligned_cols=232  Identities=10%  Similarity=0.019  Sum_probs=128.6

Q ss_pred             eeccCCchHHHHHHHHhhhhhhhhhh-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhcccc-CcccccHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA-GRRHIRFRELA  101 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~-LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~-~~~~~sy~~l~  101 (264)
                      ..+|.-++++-.+.=+.+++|+|+.- ...+.++.|-..-++-.++.++....+..-+.|..-+.|.. |    ++-.-+
T Consensus        27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG----s~~~ya  102 (554)
T KOG1286|consen   27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG----SFYTYA  102 (554)
T ss_pred             hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc----cceeee
Confidence            45777788888888899999999864 56667777766566666666677777777788876665532 2    222223


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh-c-ccCC-CCchhhHHHHH--HHHHHHHHhcCCCcchhh
Q 024688          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS-D-LYPN-GSLKLYEFIAM--VTVVMIVLSQLPTFHSLR  176 (264)
Q Consensus       102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~-~-~~~~-~~~~~~~~~~i--~~~i~~pls~~r~l~~l~  176 (264)
                      ++..|+-|| .++..-..+.-...+-+-....+..++.+.. . .... +..+...|..+  ..++++.+...|-....+
T Consensus       103 ~~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e  181 (554)
T KOG1286|consen  103 YRFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE  181 (554)
T ss_pred             eeeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence            455666566 6666666666666666666666666666540 0 0000 11222223222  223333333444444444


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhcCCCC---CCCCCCccc-cCCchhh-hhhHHHHHHHHHHHh-ccCchHHHHHhccc
Q 024688          177 HINLVSLLLSLG-YSFLVVGACINAGFSK---NAPPKDYSL-ESSKSAR-IFSAFTSISIIAAIF-GNGILPEIQLQFLD  249 (264)
Q Consensus       177 ~~S~~~~~~~~~-~~~~ii~~~~~~~~~~---~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~faf-~~~~~~~i~~~m~~  249 (264)
                      +.+.+..+.+++ +.++.++. ...+.+.   +....++.- ++.-.+. +.+++..+.+..|+| +--.+-..-+|-||
T Consensus       182 f~~~~~kvl~~v~~~Il~iVi-~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kN  260 (554)
T KOG1286|consen  182 FSLAFNKILTAVGFIILAIVI-IAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKN  260 (554)
T ss_pred             ehHHHHHHHHHHHHHHhheee-ecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccC
Confidence            443333322221 11111110 1111111   111001100 0000112 447889999999999 99999999999999


Q ss_pred             cccccceeeeecc
Q 024688          250 IGHLEMNRIQTFS  262 (264)
Q Consensus       250 p~~~~m~~~~~~~  262 (264)
                      |+ |+.+++.+.+
T Consensus       261 P~-k~IP~ai~~s  272 (554)
T KOG1286|consen  261 PR-KAIPKAIKQS  272 (554)
T ss_pred             Cc-ccccHHHHHH
Confidence            96 6777776654

>TIGR00835 agcS amino acid carrier protein

Probab=97.13  E-value=0.049  Score=50.46  Aligned_cols=146  Identities=12%  Similarity=0.037  Sum_probs=76.9

Q ss_pred             cCCchHHHHHHHHhhhhhhh-hhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccH-----HHH
Q 024688           27 SKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRF-----REL  100 (264)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~G-iL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy-----~~l  100 (264)
                      ++-|-+++.+..+.+.+|.| |+++|.|.+..| ..++.+|-+.+++..-+.+.-.-...++.+.+. +.+|     -.+
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g~~~GGP~yyi  122 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DGVFRGGPMYYI  122 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CCCEecChHHHH
Confidence            44689999999999999998 999999987777 456666666665554444443333333211111 1135     567


Q ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHH
Q 024688          101 AADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL  180 (264)
Q Consensus       101 ~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~  180 (264)
                      -+...||++| .+..+++..+....+....-.+.+.++..+       +...+. ..+..+++.-+.....++++..++-
T Consensus       123 ~~gl~~k~lg-~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~-------~~~~~v-~~i~l~~l~~~vi~GGik~Ia~v~~  193 (425)
T TIGR00835       123 KKGLGMRWLA-VLFAVFLIASFGIGNMVQANAIASALSNAF-------NVPKLV-TGIVLTVLTALIIFGGLKRIAKISS  193 (425)
T ss_pred             HHHhCccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHc-------CCcHHH-HHHHHHHHHHHHHhcCchHHHHHHH
Confidence            7777777434 443444222212223333333333443221       122222 2223333333334456666666665


Q ss_pred             HHH
Q 024688          181 VSL  183 (264)
Q Consensus       181 ~~~  183 (264)
                      .-+
T Consensus       194 ~lv  196 (425)
T TIGR00835       194 VVV  196 (425)
T ss_pred             HHH
Confidence            444

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>TIGR02119 panF sodium/pantothenate symporter

Probab=96.97  E-value=0.29  Score=46.07  Aligned_cols=150  Identities=5%  Similarity=0.098  Sum_probs=97.1

Q ss_pred             eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHH----HHHcchhccccCcccccHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYL----MSKVLDHCEKAGRRHIRFR   98 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~l----L~~~~~~~~~~~~~~~sy~   98 (264)
                      +--|+-+++.....+..+.+| ...++.|-...+.|+.+..+..... ...+....+    +.+..++   .+  ..|..
T Consensus        37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~--~~T~~  110 (471)
T TIGR02119        37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQV-PTGYFVLGVLGKKFAIISRK---YN--AITIN  110 (471)
T ss_pred             EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---cC--CccHH
Confidence            346777888888888888887 4566788888888864321111100 011111112    2222333   33  45999


Q ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHH
Q 024688           99 ELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHI  178 (264)
Q Consensus        99 ~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~  178 (264)
                      |.-++-||++..+.+..+...+..++...+.+.-.+..++.++.       .+....+++..++++-.+..--++...++
T Consensus       111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GG~~av~~t  183 (471)
T TIGR02119       111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------LSYLTALFIFSSSVLIYTTFGGFRAVALT  183 (471)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            99999999765677888888877777777777777777777652       44444456666667777788888888888


Q ss_pred             HHHHHHHH
Q 024688          179 NLVSLLLS  186 (264)
Q Consensus       179 S~~~~~~~  186 (264)
                      ..+=.+..
T Consensus       184 d~iQ~~v~  191 (471)
T TIGR02119       184 DAIQGIVM  191 (471)
T ss_pred             HHHHHHHH
Confidence            77665433

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=96.93  E-value=0.25  Score=46.66  Aligned_cols=152  Identities=5%  Similarity=0.026  Sum_probs=93.3

Q ss_pred             eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHH--HHHHH-HHHHHHHHHHHcchhccccCcccccHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCL--TVMGF-VTFYSYYLMSKVLDHCEKAGRRHIRFRE   99 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l--~~~~~-~~~~s~~lL~~~~~~~~~~~~~~~sy~~   99 (264)
                      +-.|+-+++-..+.+..+.+| ...++.|-...+.|+.+....+  ..... ...+-+..+.+..++   .+  ..|..|
T Consensus        38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e  112 (483)
T PRK09442         38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YN--AVTLND  112 (483)
T ss_pred             eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CccHHH
Confidence            346776777777777777666 5778888777777864211111  11111 111112223333343   33  459999


Q ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688          100 LAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (264)
Q Consensus       100 l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S  179 (264)
                      .-++-||++..+.+..+...+..+....+.+.-.+..++.++.       ......+++..++++-.+...-++...++.
T Consensus       113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~av~~TD  185 (483)
T PRK09442        113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-------ISYETGLLIFGITVALYTAFGGFRAVVLTD  185 (483)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            9999999765667777766666666666666677777777642       334444556666677788888888888887


Q ss_pred             HHHHHHHH
Q 024688          180 LVSLLLSL  187 (264)
Q Consensus       180 ~~~~~~~~  187 (264)
                      .+=.+..+
T Consensus       186 ~iQ~~i~~  193 (483)
T PRK09442        186 ALQGIVML  193 (483)
T ss_pred             HHHHHHHH
Confidence            66554333

>PRK15015 carbon starvation protein A; Provisional

Probab=96.76  E-value=0.043  Score=52.87  Aligned_cols=155  Identities=14%  Similarity=0.083  Sum_probs=93.8

Q ss_pred             cccccCCCCccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHH----HHHHHHHHHHHcchhc
Q 024688           12 EVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGF----VTFYSYYLMSKVLDHC   87 (264)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~----~~~~s~~lL~~~~~~~   87 (264)
                      +....+||.| ++.-+   -+--.-+=..++-|+|-+-=|..-++.||+++.+++++=.+    +-.|...  .-+.++ 
T Consensus        70 PA~~~~DG~D-YvPt~---k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L--~~S~R~-  142 (701)
T PRK15015         70 PAVRHNDGLD-YVPTD---KKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVL--FVSTRR-  142 (701)
T ss_pred             CceECCCCCC-cCcCC---ccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhhe--eeeecC-
Confidence            3444667755 22222   22344566678899999999999999999999999776443    3333322  222332 


Q ss_pred             cccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHh
Q 024688           88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS  167 (264)
Q Consensus        88 ~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls  167 (264)
                        . -|  |..|++++..|++ ++.+..+.+++.+.....++..++.+.+...     |.+.  ...++.+-..+++-+-
T Consensus       143 --~-Gr--Sig~ia~~~iG~~-~~~lfli~i~~iliiviAvfalvvv~al~~s-----P~~~--fsv~~tIpiAl~mG~~  209 (701)
T PRK15015        143 --D-GR--SLGELVKEEMGPT-AGVIALVACFMIMVIILAVLAMIVVKALTHS-----PWGT--YTVAFTIPLALFMGIY  209 (701)
T ss_pred             --C-Cc--cHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----cHHH--HHHHHHHHHHHHHHHH
Confidence              2 24  9999999999995 8888888888877777777766666665321     1111  1112222222222221


Q ss_pred             c-CCCcchhhHHHHHHHHHH
Q 024688          168 Q-LPTFHSLRHINLVSLLLS  186 (264)
Q Consensus       168 ~-~r~l~~l~~~S~~~~~~~  186 (264)
                      + -++.+.....|.++++..
T Consensus       210 l~~~r~g~v~~~SiiGvvll  229 (701)
T PRK15015        210 LRYLRPGRIGEVSVIGLVFL  229 (701)
T ss_pred             heeecCCchHHHHHHHHHHH
Confidence            1 224555666788887643

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=96.62  E-value=0.075  Score=50.18  Aligned_cols=119  Identities=17%  Similarity=0.154  Sum_probs=80.4

Q ss_pred             cccccccCCCCccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHH--HHHHHHHHcchhc
Q 024688           10 FLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF--YSYYLMSKVLDHC   87 (264)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~--~s~~lL~~~~~~~   87 (264)
                      ..+.+..+||.|    -=..+.+...-+=..++-|+|-+-=|.--++.||.+|.+++++=.++..  .=...+.-+.|| 
T Consensus        37 ~TPA~~~nDG~D----YVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~-  111 (575)
T COG1966          37 PTPAHRKNDGVD----YVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH-  111 (575)
T ss_pred             CCCceeccCCcc----cccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc-
Confidence            334555677755    2233455666777778999999999999999999999999876554321  111111212222 


Q ss_pred             cccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 024688           88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQI  139 (264)
Q Consensus        88 ~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~  139 (264)
                        .   -.|-.|++++.+|++ .+.+..+...+.......++...+.+.+.+
T Consensus       112 --~---G~Si~~ia~~~lG~~-a~~~~~~~~l~iliiv~Avfa~vv~~~l~~  157 (575)
T COG1966         112 --G---GKSIGEIAGKYLGRT-AKVFFLLLALILLILVGAVFAAVIAKLLAN  157 (575)
T ss_pred             --C---CccHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              2   239999999999996 678888887777777766666666665544

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=96.41  E-value=0.75  Score=42.20  Aligned_cols=142  Identities=13%  Similarity=0.106  Sum_probs=85.4

Q ss_pred             hHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchh
Q 024688           31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM  110 (264)
Q Consensus        31 ~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g  110 (264)
                      |+...+|+.+-..|+....       .++--+++..++-.++...-.-+....-.      +...++.-+.|..||++ |
T Consensus         7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~------~~Gl~~~v~sR~~FG~~-G   72 (386)
T TIGR02358         7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA------DTGLSAMGSLKLSLGSK-G   72 (386)
T ss_pred             HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccCcCHHHHHHHHHccc-h
Confidence            6677777777777654321       44444444433333332222223332222      12458999999999995 9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHH
Q 024688          111 FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY  189 (264)
Q Consensus       111 ~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~  189 (264)
                      .++..+...+...|=-.......++.+..+.....+.  .....++++..++.++.+.. ..+.++++..++.......
T Consensus        73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~~~i~  148 (386)
T TIGR02358        73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE--ESPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWLLLIA  148 (386)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            9999988888888887778888899998887543211  12233445555555555543 4677777777776544433

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>TIGR00813 sss transporter, SSS family

Probab=96.38  E-value=0.51  Score=43.43  Aligned_cols=147  Identities=10%  Similarity=0.105  Sum_probs=96.1

Q ss_pred             cCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           27 SKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      |+-+++...+.+..+.+| ...++.|....+.|+.. ........+......++..+..++   .+  ..|..|.-+.-|
T Consensus         3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T~~e~l~~Ry   76 (407)
T TIGR00813         3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFIN---NG--AYTMPEYLEKRF   76 (407)
T ss_pred             CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---cC--CCchhHHHHHHh
Confidence            555566677777666666 67788888888888532 221122222223344444444443   33  459999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~  185 (264)
                      |++..|.+..+...+..+....+.+.-.+..++.+..       .....-+++..++++-.+..--++...++..+=.+.
T Consensus        77 g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i  149 (407)
T TIGR00813        77 GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI  149 (407)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence            9866778777877788888888888888888877652       333443455566666677777888888887766544


Q ss_pred             H
Q 024688          186 S  186 (264)
Q Consensus       186 ~  186 (264)
                      .
T Consensus       150 ~  150 (407)
T TIGR00813       150 M  150 (407)
T ss_pred             H
Confidence            3

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=95.95  E-value=0.7  Score=42.43  Aligned_cols=148  Identities=13%  Similarity=0.201  Sum_probs=85.2

Q ss_pred             ccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (264)
                      .|+.+++-..+.+..+.+| ...++.|-...+.|+.. ...-+...+.......++.+-.++   .+  ..|..|.-++-
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e~~~~R   78 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR---SG--AVTIPEYLEKR   78 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH---TT----SHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc---cc--hhhhhhhhhhh
Confidence            4666788888888887777 46788899999999753 222222222223333444444443   33  44999999999


Q ss_pred             hCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          105 LGSGW-MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       105 ~G~~~-g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      ||++. .|.+..+...+.........+.-.+..++.++       +.+....+++..++++-.+..--++...++..+=.
T Consensus        79 yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~-------gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~  151 (406)
T PF00474_consen   79 YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF-------GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG  151 (406)
T ss_dssp             T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-------T--HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred             cCCchhhhhhcccccchhhhhhhhccccccccchhhcc-------chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence            99973 26666666666666777777777777777664       23444445566666677777777888887776555


Q ss_pred             HHH
Q 024688          184 LLS  186 (264)
Q Consensus       184 ~~~  186 (264)
                      +..
T Consensus       152 ~i~  154 (406)
T PF00474_consen  152 VIM  154 (406)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>PRK11017 codB cytosine permease; Provisional

Probab=95.89  E-value=1.4  Score=40.62  Aligned_cols=82  Identities=11%  Similarity=0.056  Sum_probs=50.1

Q ss_pred             cccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcc
Q 024688           94 HIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFH  173 (264)
Q Consensus        94 ~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~  173 (264)
                      ..++.-+.|..||.+ |.++..+...+...|=........++.++....       .....+.+++.++..+.+... .+
T Consensus        70 G~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-------~~~~~~~~i~~~l~~~~~~~G-~~  140 (404)
T PRK11017         70 GLSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-------LDINLLIVLSGLLMTVTAYFG-IS  140 (404)
T ss_pred             CcCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHH-HH
Confidence            469999999999994 988888777766666555555556666655432       112224455555555555432 44


Q ss_pred             hhhHHHHHHHH
Q 024688          174 SLRHINLVSLL  184 (264)
Q Consensus       174 ~l~~~S~~~~~  184 (264)
                      .+++++.++..
T Consensus       141 ~i~~~~~~~~p  151 (404)
T PRK11017        141 ALTILSRIAVP  151 (404)
T ss_pred             HHHHHHHHHHH
Confidence            45555554443

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=95.78  E-value=0.18  Score=46.86  Aligned_cols=112  Identities=11%  Similarity=0.017  Sum_probs=62.3

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRG--LGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~--~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      +|+.++++-+..-....+....+.+-.....  .++--+++.+++-.++...-.-++...-.|   .   ..++.-+.|.
T Consensus         6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r---~---Gl~~~v~sR~   79 (440)
T PF02133_consen    6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR---T---GLPTMVLSRA   79 (440)
T ss_dssp             G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC---C------HHHHTTT
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc---c---CCCchhcchh
Confidence            5666555544444444444443333333322  333444444444443333323333333222   2   3488899999


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL  144 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~  144 (264)
                      .||. +|..+..+...+...|=...-..+.++.+..+....
T Consensus        80 ~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~  119 (440)
T PF02133_consen   80 SFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII  119 (440)
T ss_dssp             TS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999 599999999888888888888888999999887654

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>PRK12488 acetate permease; Provisional

Probab=95.46  E-value=2.6  Score=40.57  Aligned_cols=149  Identities=10%  Similarity=0.184  Sum_probs=94.5

Q ss_pred             eeccCCchHHHHHHHHhhhhhh-hhhhHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHcchhccccCcccccHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRELA  101 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~-GiL~LP~a~~~~G~v~g~i~l~~~~~~~~-~s~~lL~~~~~~~~~~~~~~~sy~~l~  101 (264)
                      +--|+-+++...+.+..+.+++ ..++.|-.....|+-. ...... ..+.+ ....++.+-.++   .+  ..|..|.-
T Consensus        64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~~~g-~~~g~~~~~~~~a~~lr~---~g--~~T~~d~l  136 (549)
T PRK12488         64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLYALG-VLAGWPIILFLIAERLRN---LG--KYTFADVV  136 (549)
T ss_pred             eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHHHHH-HHHHHHHHHHHHHHHHHH---CC--CcchHHHH
Confidence            3466777888888888887774 4688998888888632 111111 11111 112333433333   33  35999998


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (264)
Q Consensus       102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~  181 (264)
                      +.=||.|..|.+..+...+..+.-....+.-.+..++.++.       .....-+++..++++-.+..--++...++..+
T Consensus       137 ~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i  209 (549)
T PRK12488        137 SYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-------ISYLYAVVIVGALMVLYVTFGGMLATTWVQII  209 (549)
T ss_pred             HHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            88888545778888877777777777777777777776642       33333355566666777777788888888776


Q ss_pred             HHHHH
Q 024688          182 SLLLS  186 (264)
Q Consensus       182 ~~~~~  186 (264)
                      =.+..
T Consensus       210 Q~~im  214 (549)
T PRK12488        210 KAVLL  214 (549)
T ss_pred             HHHHH
Confidence            65433

>PRK09395 actP acetate permease; Provisional

Probab=95.44  E-value=2.6  Score=40.54  Aligned_cols=147  Identities=13%  Similarity=0.142  Sum_probs=88.2

Q ss_pred             eccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      -.|+-+++...+.+..+.++ ...++.|-...+.|+..- .......+-......++.+-.++   .+  ..|+.|.-+.
T Consensus        67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~-~~~~~~~~g~~~~~~~~~~~~r~---~g--~~T~~d~l~~  140 (551)
T PRK09395         67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGL-IYSIGFLVGWPIILFLIAERLRN---LG--KYTFADVASY  140 (551)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHhh---CC--CccHHHHHHH
Confidence            35666777777777777666 567889988888887431 11111111111122333443333   33  3599999999


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      =||+|.-|.+..+...+..+....+.+.-.+..++.+.       +.+....+++..++++-.+..--++...++..+=.
T Consensus       141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~-------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~  213 (551)
T PRK09395        141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF-------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKA  213 (551)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            99954467777776665555555555555666666653       23344445556666667777777888777776554


Q ss_pred             H
Q 024688          184 L  184 (264)
Q Consensus       184 ~  184 (264)
                      +
T Consensus       214 i  214 (551)
T PRK09395        214 V  214 (551)
T ss_pred             H
Confidence            3

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=95.03  E-value=3.6  Score=39.67  Aligned_cols=147  Identities=11%  Similarity=0.179  Sum_probs=88.6

Q ss_pred             eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHcchhccccCcccccHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRELA  101 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~-~s~~lL~~~~~~~~~~~~~~~sy~~l~  101 (264)
                      .--|+.+++...+.+..+.++ ...++.|-...+.|+-. ....+. ..+.+ ...+++.+-.++   .+  ..|..|.-
T Consensus        64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~~g-~~~~~~i~~~~~a~~lrr---~g--~~T~~d~l  136 (549)
T TIGR02711        64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYSLG-FLVGWPIILFLIAERLRN---LG--RYTFADVA  136 (549)
T ss_pred             eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHHH-HHHHHHHHHHHHHHHHHH---cC--CccHHHHH
Confidence            345666677767777777665 67889998888888632 211111 11111 223444444443   34  35999999


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (264)
Q Consensus       102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~  181 (264)
                      +.=||.|.-|.+..+...+..+.-....+.-.+..++.++.       .....-+++..++++--+..--++...++..+
T Consensus       137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i  209 (549)
T TIGR02711       137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-------LNYHVAVVLVGILMVMYVLFGGMLATTWVQII  209 (549)
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            88887544677777766666666566666666666666542       23333345555666666677777777777765


Q ss_pred             HHH
Q 024688          182 SLL  184 (264)
Q Consensus       182 ~~~  184 (264)
                      =.+
T Consensus       210 Q~~  212 (549)
T TIGR02711       210 KAV  212 (549)
T ss_pred             HHH
Confidence            543

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=94.91  E-value=0.89  Score=41.64  Aligned_cols=78  Identities=13%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             ccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcch
Q 024688           95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS  174 (264)
Q Consensus        95 ~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~  174 (264)
                      .-..+++++.||+ +|+.+..+.+.+.|++++++.....+|.++++..      ..+...|.++..++.+-++.. .++.
T Consensus       255 ~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~------k~~y~~~v~~~~l~s~~ia~~-Gl~~  326 (378)
T TIGR00796       255 QILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP------KLSYKTWVIVFTLFSFIVANL-GLTQ  326 (378)
T ss_pred             HHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHh-CHHH
Confidence            3778899999999 6999999999999999999999999999988753      244555555555555555443 4555


Q ss_pred             hhHHHH
Q 024688          175 LRHINL  180 (264)
Q Consensus       175 l~~~S~  180 (264)
                      +-..+.
T Consensus       327 Ii~~~~  332 (378)
T TIGR00796       327 IISISI  332 (378)
T ss_pred             HHHHHH
Confidence            444443

transmembrane helical spanners.

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.68  E-value=1.1  Score=42.52  Aligned_cols=220  Identities=15%  Similarity=0.111  Sum_probs=97.4

Q ss_pred             hHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHhCCchh
Q 024688           31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM  110 (264)
Q Consensus        31 ~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g  110 (264)
                      .++..|-+.+...|.- .+|.+.+...|-..-.-..++.++.......=|.|.+-..|..|.   -|--.+. .-++|||
T Consensus        55 ~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg---Ly~waa~-lap~k~~  129 (550)
T KOG1289|consen   55 IFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG---LYFWAAV-LAPPKYG  129 (550)
T ss_pred             HHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc---HHHHHHH-hcCcchh
Confidence            4455555555555421 256666665553322222444455556666667776665443332   2332222 2355666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHH---HhcCCCcchhhHHHHHHHH
Q 024688          111 FYFVIFIQTAINTGVGIGAIL---LAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIV---LSQLPTFHSLRHINLVSLL  184 (264)
Q Consensus       111 ~~~~~i~i~~~~~g~~i~y~i---~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~p---ls~~r~l~~l~~~S~~~~~  184 (264)
                      +....+.-....+|-....--   ..++.+.......+|+-..+.+...+++.++++.   +.+++ -+.+++.+.+++.
T Consensus       130 ~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p-~r~l~~I~~~~~~  208 (550)
T KOG1289|consen  130 PFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLP-TRVLARINSVSVY  208 (550)
T ss_pred             hHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCC-cHHHHHHHHHHHH
Confidence            444333333222222221111   1122222222223444322222222333333333   33322 3456666666665


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC--CCCCCccc---cC-Cch-hhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688          185 LSLGYSFLVVGACINAGFSKN--APPKDYSL---ES-SKS-ARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN  256 (264)
Q Consensus       185 ~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~---~~-~~~-~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~  256 (264)
                      ..++..++.++...... .++  .+..++-.   .+ ++. +.-|.+..++-.-+..+ |-..-..+-+|-||+++ +-.
T Consensus       209 ~~ll~~~i~~I~lla~~-~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk-~aP  286 (550)
T KOG1289|consen  209 LNLLFLVILMITLLAAS-SKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASK-AAP  286 (550)
T ss_pred             HHHHHHHHHHHHhhhcc-CCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhh-hcc
Confidence            44443333222211111 111  11111111   11 111 13455666677777778 88899999999999863 444


Q ss_pred             ee
Q 024688          257 RI  258 (264)
Q Consensus       257 ~~  258 (264)
                      |+
T Consensus       287 rg  288 (550)
T KOG1289|consen  287 RG  288 (550)
T ss_pred             HH
Confidence            43

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=94.32  E-value=4.6  Score=37.75  Aligned_cols=141  Identities=11%  Similarity=0.085  Sum_probs=79.0

Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhh
Q 024688           97 FRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLR  176 (264)
Q Consensus        97 y~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~  176 (264)
                      =-.+.|..||. +|.++..+.+.+.+.|=...-.+..++....       ........++++..++++..+.. -.+.+.
T Consensus        83 qmi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~-------~~~~~~~~~ili~g~l~~l~~if-G~r~l~  153 (442)
T COG1457          83 QMILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGS-------GTGLPVWAGILIIGVLMTLVTIF-GYRALH  153 (442)
T ss_pred             hheeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhcccccc-------CCCCcHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence            34467899999 5999999999999999998888888887111       12445566666666666655543 355555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh--ccCchHHHHHhcccccc
Q 024688          177 HINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQLQFLDIGH  252 (264)
Q Consensus       177 ~~S~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf--~~~~~~~i~~~m~~p~~  252 (264)
                      .++..++...++.....++......   .  ..+..... ...+...+..+++..+=.+  .-....+.-+.+|+|++
T Consensus       154 ~l~~~a~~~~~~lf~~l~~~~~~~~---~--~~~~~~~~-~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~  225 (442)
T COG1457         154 KLERIAVPLLLLLFLYLLALLFRSK---G--GLDALWVK-GPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTP  225 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc---c--ccceeecc-CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCch
Confidence            5555555433222222222222211   0  01111100 0111123444444333333  55688899999988874

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=93.65  E-value=1.4  Score=40.99  Aligned_cols=77  Identities=14%  Similarity=0.259  Sum_probs=59.4

Q ss_pred             cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchh
Q 024688           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (264)
Q Consensus        96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l  175 (264)
                      -..+++++.+|+ .|..+..+.+.+.|+-++++.....+|.+++.++      ..+...|.++++++-+.++.. .++.+
T Consensus       262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~------kisY~~~v~i~~i~S~~ian~-Gl~~I  333 (427)
T PF05525_consen  262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP------KISYKVWVIIFTIFSFIIANL-GLDQI  333 (427)
T ss_pred             HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccChHHHHHHHHHHHHHHHHh-CHHHH
Confidence            677789999999 6999999999999999999999999999999864      344555666666666666554 34444


Q ss_pred             hHHHH
Q 024688          176 RHINL  180 (264)
Q Consensus       176 ~~~S~  180 (264)
                      -..|.
T Consensus       334 i~~s~  338 (427)
T PF05525_consen  334 IKISV  338 (427)
T ss_pred             HHHHH
Confidence            44443

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=92.53  E-value=9.8  Score=36.14  Aligned_cols=146  Identities=9%  Similarity=0.046  Sum_probs=94.8

Q ss_pred             ccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHHcchhccccCcccccHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLT---VMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~---~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~  101 (264)
                      .|+-+.+-..+...-+..+ .-.+++|-.....|+...-+...   ...+.-.+-...+.+..++   .+  ..|..|.-
T Consensus        37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~~--~~T~~d~l  111 (493)
T COG0591          37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA---RG--ATTIPDFL  111 (493)
T ss_pred             CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC--CccHHHHH
Confidence            3443444556666666666 88999999999999654333222   2333334444444444432   33  45999999


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHH
Q 024688          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (264)
Q Consensus       102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~  181 (264)
                      ++=||.++.|.++.+...+..+.-+...+.-.+..++..+.       .+...-+.+..+++..-+.+--++...++..+
T Consensus       112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i  184 (493)
T COG0591         112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------ISYVTGILIGALIVALYTFLGGLRAVVWTDFI  184 (493)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            99999447999999999999999999999999988866542       22222233344555555666667777777654


Q ss_pred             HH
Q 024688          182 SL  183 (264)
Q Consensus       182 ~~  183 (264)
                      =-
T Consensus       185 qg  186 (493)
T COG0591         185 QG  186 (493)
T ss_pred             HH
Confidence            33

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=91.99  E-value=11  Score=35.70  Aligned_cols=154  Identities=7%  Similarity=0.016  Sum_probs=85.4

Q ss_pred             eeccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHcchhccccCcccccHHHHH
Q 024688           24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (264)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~-~~s~~lL~~~~~~~~~~~~~~~sy~~l~  101 (264)
                      .--|+-+++-..+.+..+.++ ...++.|....+.|+-.  ....+...+. .....++.+-.+..........|..|.-
T Consensus        37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l  114 (502)
T PRK15419         37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE--SWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYF  114 (502)
T ss_pred             eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHH
Confidence            346777788777777777766 55678999888889643  1111111111 1111222211111000011245899998


Q ss_pred             HHHhCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688          102 ADVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (264)
Q Consensus       102 ~~~~G~~--~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S  179 (264)
                      ++=||++  +-|.+..+...+....-+.+.+...+..++.++       +.+....+++..++++.-+..--++...++.
T Consensus       115 ~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~-------gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD  187 (502)
T PRK15419        115 TGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF-------GMSYETALWAGAAATILYTFIGGFLAVSWTD  187 (502)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9899863  333444555544444444444555566666554       2334444566667777777778888888887


Q ss_pred             HHHHHHH
Q 024688          180 LVSLLLS  186 (264)
Q Consensus       180 ~~~~~~~  186 (264)
                      .+=.+..
T Consensus       188 ~iQ~~im  194 (502)
T PRK15419        188 TVQASLM  194 (502)
T ss_pred             HHHHHHH
Confidence            6655433

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=91.94  E-value=12  Score=35.96  Aligned_cols=147  Identities=8%  Similarity=0.016  Sum_probs=91.1

Q ss_pred             eccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      --|+-+++...+.+..+.++ ...++.|-...+.|+-.-...+ ...........++.+-.++   .+  ..|-.|.-+.
T Consensus        30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr---~~--~~T~~e~l~~  103 (552)
T TIGR03648        30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRK---FG--KYTVPDFIGD  103 (552)
T ss_pred             eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHH---CC--CccHHHHHHH
Confidence            35777788888888878775 5678888877777863211111 1111112233555555554   44  3488888888


Q ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      =||+|..|.++.+...+..+.-....+.-.+..++.+..       .+...-+++..++++--+..--++...++-.+=.
T Consensus       104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~  176 (552)
T TIGR03648       104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQY  176 (552)
T ss_pred             HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            888655567777777666666666666666677766642       3333334555666666677777888877776554


Q ss_pred             H
Q 024688          184 L  184 (264)
Q Consensus       184 ~  184 (264)
                      +
T Consensus       177 i  177 (552)
T TIGR03648       177 I  177 (552)
T ss_pred             H
Confidence            3

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=91.16  E-value=9.9  Score=35.14  Aligned_cols=78  Identities=13%  Similarity=0.257  Sum_probs=58.6

Q ss_pred             cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchh
Q 024688           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (264)
Q Consensus        96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l  175 (264)
                      =..+..++.||+ .|+.+...++.+.|+-++++.+...+|.+++..+      ..+...|..++.++-+.++.. .++++
T Consensus       264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p------~~SY~~~v~if~i~sflvan~-GL~~I  335 (431)
T COG1114         264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP------KLSYKTWVIIFTLISFLVANL-GLEQI  335 (431)
T ss_pred             HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            567788999999 7999999999999999999999999999999875      244555566666665555544 34444


Q ss_pred             hHHHHH
Q 024688          176 RHINLV  181 (264)
Q Consensus       176 ~~~S~~  181 (264)
                      -..|..
T Consensus       336 i~isvP  341 (431)
T COG1114         336 IKISVP  341 (431)
T ss_pred             HHHHHH
Confidence            444443

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=88.97  E-value=11  Score=35.24  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             cHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchh
Q 024688           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (264)
Q Consensus        96 sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l  175 (264)
                      =....+++.+|+ +|+.+..+.+.+.|+.++++-....+|.+++.++       .+...|.++.+++-++++.+ .++++
T Consensus       266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-------isY~~~v~i~~l~S~~lSn~-G~~~I  336 (439)
T PRK15433        266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-------LSYRTLVFILGGFSMVVSNL-GLSQL  336 (439)
T ss_pred             HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHHHHHHh-HHHHH
Confidence            445578899999 7999999999999999999999999999888742       44555666677777777664 24444


Q ss_pred             hHHHH
Q 024688          176 RHINL  180 (264)
Q Consensus       176 ~~~S~  180 (264)
                      -..+.
T Consensus       337 I~~s~  341 (439)
T PRK15433        337 IQISV  341 (439)
T ss_pred             HHHHH
Confidence            44443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.29
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.0
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.57
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	98.36
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	93.77
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	92.15

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.29  E-value=6.6e-11  Score=108.12  Aligned_cols=223  Identities=11%  Similarity=-0.015  Sum_probs=137.2

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHHh
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (264)
                      +|+-+.++.++..+++++|+|++.+|...++.|. .+.+..++.+++.......+.|...+.|+.|    ++-+.+++.+
T Consensus         7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~~   81 (445)
T 3l1l_A            7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG----GSYAYARRCF   81 (445)
T ss_dssp             CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT----THHHHHHHHS
T ss_pred             CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CchhhHHhHc
Confidence            6778899999999999999999999999999996 4777777788888888888888877654332    5666778999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 024688          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (264)
Q Consensus       106 G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~~  185 (264)
                      ||.+| .++.....+.......++....++.+...++...  .+.....+.+++.++...+ ..+..+...+++.+....
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i-n~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK--DPWVLTITCVVVLWIFVLL-NIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG--SHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc--ccHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHH
Confidence            99655 7888877777666666676666666654433211  1111111112222222222 234566666666555443


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeec
Q 024688          186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTF  261 (264)
Q Consensus       186 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~  261 (264)
                      .+...+++++..+.....++. ...++.  .....+..+..++....|+| +.......-+|+|||+ |+.+|+...
T Consensus       158 ~i~~~~~~~i~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~-r~ip~a~~~  230 (445)
T 3l1l_A          158 ALIPIVGIAVFGWFWFRGETY-MAAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-RNVPIATIG  230 (445)
T ss_dssp             HHHHHHHHHHTTSTTCCCCCC-CCC-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhc-ccccCc--cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-ccccHHHHH
Confidence            333322222222221111110 011111  11112346788999999999 9999999999999995 466666544

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.00  E-value=1.5e-08  Score=92.35  Aligned_cols=221  Identities=9%  Similarity=-0.018  Sum_probs=134.9

Q ss_pred             ccCCchHHHHHHHHhhhhhhhhhhHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (264)
                      +|+-+.++..+..+++++|+|++.+|.. ...+|. .+.+..++.+++.......+.|...+.|+.|    ..-+.+++.
T Consensus         5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G----g~y~~~~~~   79 (444)
T 3gia_A            5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA----GPIAFIHKA   79 (444)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT----THHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----cHHHhHHHH
Confidence            6778899999999999999999988744 455665 5677777788888888888888877754332    556778889


Q ss_pred             hCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          105 LGSGW-MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       105 ~G~~~-g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      +|+++ +.. +.....+.....+..+....++.+...++..  +.........+++.++.. +...+..+...+++.+..
T Consensus        80 ~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~in~~g~~~~~~~~~~~~  155 (444)
T 3gia_A           80 IGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAP--INTFNIAITEIGIVAFFT-ALNFFGSKAVGRAEFFIV  155 (444)
T ss_dssp             HCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHH
T ss_pred             hCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Confidence            99963 323 3444555555556667777777776655321  111111111122222222 223345666666665555


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccceeeeecc
Q 024688          184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMNRIQTFS  262 (264)
Q Consensus       184 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~~~~~~~  262 (264)
                      ...+...++.++..+.....+     ++... .....+.+++.++....|+| +.......-+|+|||+ |+.+|+...+
T Consensus       156 ~~~i~~~~~~ii~~~~~~~~~-----~~~~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~-r~ip~ai~~~  228 (444)
T 3gia_A          156 LVKLLILGLFIFAGLITIHPS-----YVIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK-KNVPRAIFIS  228 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHCCGG-----GTSCC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcChh-----hcCCC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc-cchhHHHHHH
Confidence            433333333333333322111     11111 11223346788889999999 9999999999999996 4677665443

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.57  E-value=1.1e-06  Score=81.42  Aligned_cols=225  Identities=9%  Similarity=0.029  Sum_probs=116.3

Q ss_pred             eccCCchHHHHHHHHhhhhhhhhhhHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHcch--hccccCcccccHHHHH
Q 024688           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLD--HCEKAGRRHIRFRELA  101 (264)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~~G~v~g~i~l~~~~~~~-~~s~~lL~~~~~--~~~~~~~~~~sy~~l~  101 (264)
                      .+|+-++++.+...++.++|  +.++|. .+..|.. +++..++.+++. ......+.|...  ..| .|    ..-..+
T Consensus         9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G----G~y~~~   79 (511)
T 4djk_A            9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG----GVFAWV   79 (511)
T ss_dssp             ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC--------CHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC----ChhhhH
Confidence            46788899999999999986  557776 4667753 233333333222 336666777766  644 33    556677


Q ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh--hcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHH
Q 024688          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY--SDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (264)
Q Consensus       102 ~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S  179 (264)
                      ++.+|+++| .++.....+.......++....++.+...+  ..+. ...+....+.+++.++...+. .+..+...++.
T Consensus        80 ~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~in-~~g~~~~~~~~  156 (511)
T 4djk_A           80 SNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN-EDPITKTIAALIILWALALTQ-FGGTKYTARIA  156 (511)
T ss_dssp             HHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT-SCSSHHHHHHHHHHHHHHHHH-HTCSSSHHHHT
T ss_pred             HhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cCcHHHHHHHHHHHHHHHHHH-HhChHHHHHHH
Confidence            889999766 777777777666666666666666664432  1111 112222222222222223332 34556666665


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhcCCCCCCCCCCccccC-CchhhhhhHHHHHHHHHHHh-ccCchHHHHHhccccccccce
Q 024688          180 LVSLLLS-LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQLQFLDIGHLEMN  256 (264)
Q Consensus       180 ~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~m~  256 (264)
                      .+..... +...++++...+.....++....+.+... .++....+...++...+|+| |.......-+|+|||+ |+.+
T Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~-k~ip  235 (511)
T 4djk_A          157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPG-RDYP  235 (511)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCT-TTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcc-cchh
Confidence            5543221 11111222222211111110000011100 00100113445677889999 9999999999999996 5777


Q ss_pred             eeeecc
Q 024688          257 RIQTFS  262 (264)
Q Consensus       257 ~~~~~~  262 (264)
                      |+...+
T Consensus       236 ~ai~~~  241 (511)
T 4djk_A          236 LAMLLL  241 (511)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766543

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=98.36  E-value=2.3e-05  Score=72.89  Aligned_cols=233  Identities=11%  Similarity=-0.007  Sum_probs=128.6

Q ss_pred             CC-CCCCCCCcccccccCCCCccceeccCCchHHHHHHHHhhhhhhhhhhHHHHHHh-hChhHHHHHHHHHHHHHHHHHH
Q 024688            1 MA-QPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRG-LGWGLGFTCLTVMGFVTFYSYY   78 (264)
Q Consensus         1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a~~~-~G~v~g~i~l~~~~~~~~~s~~   78 (264)
                      |+ +|++.||.+|   ++|..-....+|+.++++-+..-+...++.+...+...+.. .++..+++.+++-.++...-..
T Consensus         1 m~~~~~~~~~~~e---~~~i~pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~   77 (501)
T 2jln_A            1 MNSTPIEEARSLL---NPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLF   77 (501)
T ss_dssp             -------CCCBCC---CSTTSCCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccc---cCCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence            44 4556566555   33333333346777777666666666666555555544443 3345566555555544443344


Q ss_pred             HHHHcchhccccCcccccHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHH
Q 024688           79 LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM  158 (264)
Q Consensus        79 lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~i~i~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i  158 (264)
                      ++.+.-.+   .   ..+|..+.|..||+ +|..+..+...+.++|-........++.+..++.... + ......++++
T Consensus        78 l~~~~G~~---~---Gl~~~v~~R~~FG~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g-~~~~~v~~~i  148 (501)
T 2jln_A           78 FTQSAAIR---W---GINFTVAARMPFGI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G-FTNLPLWIVI  148 (501)
T ss_dssp             HHTHHHHH---H---CCCHHHHTTTTSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCCHHHHHHH
T ss_pred             HHhHHHhh---c---CCChhhhhHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-cchHHHHHHH
Confidence            44333332   2   34799999999999 5989999999888888888888888998888764321 0 1123445566


Q ss_pred             HHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc-CCC-CCCCCCCccccCCchhhhhhHHHHHHHH-HHHh
Q 024688          159 VTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINA-GFS-KNAPPKDYSLESSKSARIFSAFTSISII-AAIF  235 (264)
Q Consensus       159 ~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~~ii~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf  235 (264)
                      +.++.+++.+. .++.+.++..+.....++..+.+.+..+.. +.+ ++    ..+..  +....+.+..++... .+.-
T Consensus       149 ~~~l~~~~~~~-G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~----~~~~~--~~~~~~~f~~ai~~~~~~~~  221 (501)
T 2jln_A          149 FGAIQVVTTFY-GITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGE----VMSMG--GENPGMPFSTAIMIFVGGWI  221 (501)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH----HTTCC--CSSCCSCHHHHHHHHHTTTH
T ss_pred             HHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh----hhccC--CccchHHHHHHHHHHHHHHH
Confidence            67777777754 578888877776653333333232222222 110 00    00000  001122344444332 2222


Q ss_pred             -ccCchHHHHHhcccccc
Q 024688          236 -GNGILPEIQLQFLDIGH  252 (264)
Q Consensus       236 -~~~~~~~i~~~m~~p~~  252 (264)
                       ...+.++..+++|+|+.
T Consensus       222 ~~~~~~~DysRy~~~~~~  239 (501)
T 2jln_A          222 AVVVSIHDIVKECKVDPN  239 (501)
T ss_dssp             HHHTTTHHHHTTBCCCTT
T ss_pred             HHHhccCcccccCCCCcc
Confidence             44788999999988754

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=93.77  E-value=4.2  Score=37.58  Aligned_cols=148  Identities=10%  Similarity=0.138  Sum_probs=81.6

Q ss_pred             ccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHH-HHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFT-CLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i-~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (264)
                      -|+-+++-..+.+..+.++ ...+++|-...+.|+..... +...++  .......+.+..++   .+  ..|..|.-++
T Consensus        19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~--~~i~~~~~~p~~~~---~~--~~T~~e~l~~   91 (530)
T 3dh4_A           19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAIT--LIIVGKYFLPIFIE---KG--IYTIPEFVEK   91 (530)
T ss_dssp             CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHH--HHHHHHHTHHHHHH---TT--CCSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH--HHHHHHHHHHHHHH---cC--CccHHHHHHH
Confidence            5677788788877777766 56889999988888643211 111111  11112222333333   33  4599999999


Q ss_pred             HhCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHH
Q 024688          104 VLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (264)
Q Consensus       104 ~~G~~~g~~~~~i~i~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~  182 (264)
                      -||++ .|.+..+...+ +.+..+.+.+...+..++.++       +.+....+++..+++.--+..--++...++..+=
T Consensus        92 Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~-------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ  163 (530)
T 3dh4_A           92 RFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETIL-------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ  163 (530)
T ss_dssp             HTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred             HcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            99996 66666654433 222223333333445555553       2444444566667777777888888888887766


Q ss_pred             HHHHHH
Q 024688          183 LLLSLG  188 (264)
Q Consensus       183 ~~~~~~  188 (264)
                      .+..+.
T Consensus       164 ~~im~~  169 (530)
T 3dh4_A          164 VFFLVL  169 (530)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554433

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=92.15  E-value=7.7  Score=36.32  Aligned_cols=147  Identities=10%  Similarity=0.125  Sum_probs=78.1

Q ss_pred             ccCCchHHHHHHHHhhhhh-hhhhhHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcchhccccCcccccHHHHHHHH
Q 024688           26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (264)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~a~~~~G~v~g~i~l~~~~~~~~~s~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (264)
                      -|+-+++-..+.+..+.++ ...+++|-...+.|+........ .++........+.+-.++   .+  ..|..|.-++=
T Consensus        48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r---~~--~~T~~e~l~~R  121 (593)
T 2xq2_A           48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KG--IYTIPEFVEKR  121 (593)
T ss_dssp             ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH---TT--CCSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh---CC--CCCcHHHHHHH
Confidence            4666788788888766665 56679998888888642211110 000001112222333333   33  45999999999


Q ss_pred             hCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHhhcccCCCCchhhHHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 024688          105 LGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (264)
Q Consensus       105 ~G~~~g~~~~~i~i~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~  183 (264)
                      ||++ .|.+..+...+ +.+......+...+..++.++       +.+....+++..+++...+..--++...++-.+=.
T Consensus       122 fg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~-------Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~  193 (593)
T 2xq2_A          122 FNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETIL-------GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV  193 (593)
T ss_dssp             TCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred             ccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            9985 55666554332 233222333333455566554       23344444556666677777777888877766555


Q ss_pred             HHH
Q 024688          184 LLS  186 (264)
Q Consensus       184 ~~~  186 (264)
                      +..
T Consensus       194 iim  196 (593)
T 2xq2_A          194 FFL  196 (593)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00