Citrus Sinensis ID: 024731

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccHccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccccHHHcccccccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccccccHHHcccccccEEEccccccccccccHHHccccccEEEEcccccccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRhffnddqclqncwvddenysdccqwervecndttgrvikldlrdtrnwESAEWYMnaslftpfqQLESLYLIGNNiagcvenegldtlsrlNNLKFLYLDynhfnnsifsslgglsslrnlsLIGNRLigsidikgldslgnleeldmsdnainnlvipkelhnftnleelilddsdLHISQLLQSIASFTSLKYLSMGFCTltgalhgqgklrVSEAFMILIR
Flexible Loop (DISEMBL)
mcgskrvwVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWErvecndttgrvikldlrdtRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTgalhgqgklrVSEAFMILIR
Low Complexity Region (SEG)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFnnsifsslgglsslrnlslignrliGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Disordered region (IsUnstruct)
*****RVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILI*
Disordered Region (DISOPRED)
******V**SELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Disordered Region (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Disordered Region (DISPRO)
*CGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.897	0.278	0.338	5e-19
Q05091	330	Polygalacturonase inhibit	N/A	no	0.638	0.509	0.316	4e-13
P47735	999	Receptor-like protein kin	no	no	0.760	0.200	0.302	5e-11
P93194	1109	Receptor-like protein kin	N/A	no	0.844	0.200	0.280	2e-09
Q9LRT1	1016	Probably inactive leucine	no	no	0.684	0.177	0.279	5e-09
O22938	890	Leucine-rich repeat recep	no	no	0.509	0.150	0.359	1e-08
Q9SGP2	996	Receptor-like protein kin	no	no	0.764	0.201	0.274	3e-08
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.787	0.199	0.285	4e-08
C0LGN2	1020	Probable leucine-rich rep	no	no	0.596	0.153	0.316	6e-08
Q9SH71	587	Putative inactive recepto	no	no	0.634	0.284	0.311	6e-08

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 130/275 (47%), Gaps = 39/275 (14%)

Query: 1   MCGSKRVWVSE---LIFILLVVKGWWSEG---CLEQERYALLQLRHFF--NDDQCLQNCW 52
           M  S R WV     +IF+ L+V    S     C + +R ALL+ R  F  N    + N W
Sbjct: 2   MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query: 53  VDDENYS-DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
               N S DCC W  V CND +G+VI LD+ +T  + +     N+SLF   Q L  L L 
Sbjct: 62  RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNT--FLNNYLKTNSSLFK-LQYLRHLDLT 118

Query: 112 GNNIAGCVEN--------------------EGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
             N+ G + +                    E   ++  LN L+ L L  N     I SSL
Sbjct: 119 NCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSL 178

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKELHNFTNLEE 209
           G LS L NL L  NRL+G I     DS+G+L++L     A NNL+  IP  L N +NL  
Sbjct: 179 GNLSRLVNLELFSNRLVGKIP----DSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVH 234

Query: 210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           L+L  + L + ++  SI +   L+ +S    +L+G
Sbjct: 235 LVLTHNQL-VGEVPASIGNLIELRVMSFENNSLSG 268

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 28/196 (14%)

Query: 18  VVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRV- 76
           V+    S+ C   ++  LLQ++  F D   L + W  D   +DCC W  V C+ TT R+ 
Sbjct: 18  VLNPALSDLCNPDDKKVLLQIKKAFGDPYVLAS-WKSD---TDCCDWYCVTCDSTTNRIN 73

Query: 77  ------------IKLDLRDTRNWESAEWYMNASLFTPFQQ-------LESLYLIGNNIAG 117
                       I   + D    E+ E++   +L  P Q        L+SL L   N++G
Sbjct: 74  SLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSG 133

Query: 118 CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177
            V     D LS+L NL FL L +N+   +I SSL  L +L  L L  N+L G I I    
Sbjct: 134 SVP----DFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQ 189

Query: 178 SLGNLEELDMSDNAIN 193
            +GN+ +L +S N ++
Sbjct: 190 FIGNVPDLYLSHNQLS 205

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 112/251 (44%), Gaps = 51/251 (20%)

Query: 28  LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNW 87
           L Q+   L Q +   +D     + W D+ + + C +W  V C D T  V+ +DL      
Sbjct: 21  LNQDATILRQAKLGLSDPAQSLSSWSDNNDVTPC-KWLGVSC-DATSNVVSVDLSS---- 74

Query: 88  ESAEWYMNASLFTPFQQ-------LESLYLIGNNIAGCVENEGLDT--------LSR--- 129
                +M   L  PF         L SL L  N+I G +  +  DT        LS    
Sbjct: 75  -----FM---LVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLL 126

Query: 130 -----------LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS 178
                      L NLKFL +  N+ +++I SS G    L +L+L GN L G+I      S
Sbjct: 127 VGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIPA----S 182

Query: 179 LGN---LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL 235
           LGN   L+EL ++ N  +   IP +L N T L+ L L   +L +  +  S++  TSL  L
Sbjct: 183 LGNVTTLKELKLAYNLFSPSQIPSQLGNLTELQVLWLAGCNL-VGPIPPSLSRLTSLVNL 241

Query: 236 SMGFCTLTGAL 246
            + F  LTG++
Sbjct: 242 DLTFNQLTGSI 252

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 24/246 (9%)

Query: 6   RVWVSELIFILLVVKGWWSEGCLEQERYALLQL-RHFFNDDQCLQNCWVDDENYSDCCQW 64
           +V V+  +  L      ++   L  +  ALL L RH+ +    +   W  + + S  C W
Sbjct: 2   KVAVNTFLLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSW--NASDSTPCSW 59

Query: 65  ERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTP----FQQLESLYLIGNNIAGCVE 120
             VEC+       +    DT N  S   Y  +  F P     + L+ + L GN   G + 
Sbjct: 60  LGVECD-------RRQFVDTLNLSS---YGISGEFGPEISHLKHLKKVVLSGNGFFGSIP 109

Query: 121 NEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180
           ++    L   + L+ + L  N F  +I  +LG L +LRNLSL  N LIG    + L S+ 
Sbjct: 110 SQ----LGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFP-ESLLSIP 164

Query: 181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 240
           +LE +  + N +N   IP  + N + L  L LDD+      +  S+ + T+L+ L +   
Sbjct: 165 HLETVYFTGNGLNG-SIPSNIGNMSELTTLWLDDNQFS-GPVPSSLGNITTLQELYLNDN 222

Query: 241 TLTGAL 246
            L G L
Sbjct: 223 NLVGTL 228

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 17/197 (8%)

Query: 1   MCGSKRVWVSELIFILL-----VVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDD 55
           M   +R  +S  +F+ L     ++ G      L  +   L+  +   ND       W +D
Sbjct: 1   MGKQRRTMISFTLFLTLTMMSSLINGDTDSIQLNDDVLGLIVFKSDLNDPFSHLESWTED 60

Query: 56  ENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI 115
           +N    C W  V+CN  T RVI+L L    +  +    +N  +    Q+L+ L L  NN 
Sbjct: 61  DNTP--CSWSYVKCNPKTSRVIELSL----DGLALTGKINRGI-QKLQRLKVLSLSNNNF 113

Query: 116 AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175
            G +     + LS  N+L+ L L +N+ +  I SSLG ++SL++L L GN   G++    
Sbjct: 114 TGNI-----NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDL 168

Query: 176 LDSLGNLEELDMSDNAI 192
            ++  +L  L +S N +
Sbjct: 169 FNNCSSLRYLSLSHNHL 185

Arabidopsis thaliana (taxid: 3702)

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 113 NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID 172
           NN++G +  E     S+ +NL  L L  N F  +I + LG L +L+ L L GN L G I 
Sbjct: 288 NNLSGEIVAE----FSKCSNLTLLNLAANGFAGTIPTELGQLINLQELILSGNSLFGEIP 343

Query: 173 IKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL 232
              L S GNL +LD+S+N +N   IPKEL +   L+ L+LD + +    +   I +   L
Sbjct: 344 KSFLGS-GNLNKLDLSNNRLNG-TIPKELCSMPRLQYLLLDQNSIR-GDIPHEIGNCVKL 400

Query: 233 KYLSMGFCTLTGALHGQ-GKLR 253
             L +G   LTG +  + G++R
Sbjct: 401 LQLQLGRNYLTGTIPPEIGRMR 422

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 43/244 (17%)

Query: 28  LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNW 87
           L Q+ + L Q++   +D     + W  + N +  C+W  V C      V  +DL      
Sbjct: 16  LNQDGFILQQVKLSLDDPDSYLSSW--NSNDASPCRWSGVSCAGDFSSVTSVDLS----- 68

Query: 88  ESAEWYMNASLFTPFQQ-------LESLYLIGN--------NIAGCVENEGLD------- 125
                  +A+L  PF         L  L L  N        NIA C   + LD       
Sbjct: 69  -------SANLAGPFPSVICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLT 121

Query: 126 -----TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG 180
                TL+ +  L  L L  N+F+  I +S G   +L  LSL+ N L G+I    L ++ 
Sbjct: 122 GELPQTLADIPTLVHLDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIP-PFLGNIS 180

Query: 181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 240
            L+ L++S N  +   IP E  N TNLE + L +  L + Q+  S+   + L  L +   
Sbjct: 181 TLKMLNLSYNPFSPSRIPPEFGNLTNLEVMWLTECHL-VGQIPDSLGQLSKLVDLDLALN 239

Query: 241 TLTG 244
            L G
Sbjct: 240 DLVG 243

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 17/224 (7%)

Query: 30  QERYALLQLRHFFNDDQC--LQNCWVDDE-NYSDC-CQWERVECNDTTGRVIKLDLRDTR 85
           Q+  ALL+ +     D    + N W D+  +++ C   W  + CN   G V  + L +  
Sbjct: 7   QDIMALLEFKKGIKHDPTGFVLNSWNDESIDFNGCPSSWNGIVCNG--GNVAGVVLDNLG 64

Query: 86  NWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN 145
               A++    SLF+   +L  L +  N+++G + N+    L    +L+FL L  N F++
Sbjct: 65  LTADADF----SLFSNLTKLVKLSMSNNSLSGVLPND----LGSFKSLQFLDLSDNLFSS 116

Query: 146 SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT 205
           S+   +G   SLRNLSL GN   G I  + +  L +L+ LDMS N+++   +PK L    
Sbjct: 117 SLPKEIGRSVSLRNLSLSGNNFSGEIP-ESMGGLISLQSLDMSSNSLSG-PLPKSLTRLN 174

Query: 206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQ 249
           +L  L L  S+    ++ +     +SL+ L +   ++ G L G+
Sbjct: 175 DLLYLNL-SSNGFTGKMPRGFELISSLEVLDLHGNSIDGNLDGE 217

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 86/196 (43%), Gaps = 39/196 (19%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPF--QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKF 135
           +LDL  TRN      Y+N S+   +    L ++ L+GN I+G +  E    L  L  L  
Sbjct: 115 ELDL--TRN------YLNGSIPPEWGASSLLNISLLGNRISGSIPKE----LGNLTTLSG 162

Query: 136 LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
           L L+YN  +  I   LG L +L+ L L  N L G I       L  L +L +SDN     
Sbjct: 163 LVLEYNQLSGKIPPELGNLPNLKRLLLSSNNLSGEIP-STFAKLTTLTDLRISDNQFTG- 220

Query: 196 VIPKELHNFTNLEELILDDS-----------------DLHISQLLQSIASF------TSL 232
            IP  + N+  LE+L++  S                 DL I+ L    + F      TS+
Sbjct: 221 AIPDFIQNWKGLEKLVIQASGLVGPIPSAIGLLGTLTDLRITDLSGPESPFPPLRNMTSM 280

Query: 233 KYLSMGFCTLTGALHG 248
           KYL +  C LTG L  
Sbjct: 281 KYLILRNCNLTGDLPA 296

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 24  SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ-WERVECNDTTGRVIKLDLR 82
           S   LE ++ ALL     FN  +   N        SD C  W  V CN+   R++ + L 
Sbjct: 18  SSQTLEDDKKALLHFLSSFNSSRLHWN------QSSDVCHSWTGVTCNENGDRIVSVRLP 71

Query: 83  D----------TRNWESAEWYMN----------ASLFTPFQQLESLYLIGNNIAGCVENE 122
                      T +  S+  +++           S FT  + L  LYL  N+++G +   
Sbjct: 72  AVGFNGLIPPFTISRLSSLKFLSLRKNHFTGDFPSDFTNLKSLTHLYLQHNHLSGPL--- 128

Query: 123 GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182
            L   S L NLK L L  N FN SI +SL GL+SL+ L+L  N   G  +I  L  L  L
Sbjct: 129 -LAIFSELKNLKVLDLSNNGFNGSIPTSLSGLTSLQVLNLANNSFSG--EIPNLH-LPKL 184

Query: 183 EELDMSDNAINNLVIPKELHNF 204
            ++++S+N +    IPK L  F
Sbjct: 185 SQINLSNNKLIG-TIPKSLQRF 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
255585991	743	serine-threonine protein kinase, plant-t	0.878	0.310	0.466	9e-43
224142721	926	predicted protein [Populus trichocarpa]	0.847	0.240	0.480	1e-42
224120284	929	predicted protein [Populus trichocarpa]	0.870	0.246	0.420	4e-42
224145105	280	predicted protein [Populus trichocarpa]	0.908	0.853	0.423	2e-38
224112233	976	leucine rich repeat family protein with	0.870	0.234	0.439	3e-37
224142513	290	predicted protein [Populus trichocarpa]	0.828	0.751	0.423	2e-36
224142499	436	predicted protein [Populus trichocarpa]	0.726	0.438	0.472	4e-36
224134597	947	predicted protein [Populus trichocarpa]	0.866	0.240	0.429	5e-36
255581263	912	serine-threonine protein kinase, plant-t	0.806	0.232	0.463	4e-35
224144186	973	predicted protein [Populus trichocarpa]	0.882	0.238	0.430	1e-34

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/238 (46%), Positives = 151/238 (63%), Gaps = 7/238 (2%)

Query: 12  LIFILLVVKG-WWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVEC 69
           +  I + ++G W S+GCLE ER AL+Q++ FFN  +    + W     Y DCC W +V C
Sbjct: 1   MTIIFIDIQGKWRSDGCLEVERNALMQIKPFFNYHNGNFLSSW---GFYDDCCNWNKVVC 57

Query: 70  NDTTGRVIKLDLRDTRN-WESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS 128
           N  TGRV  L L  TR+ W+S +WY+NASLF PFQ+L++L + GNNIAGC+ENEG + LS
Sbjct: 58  NTITGRVTALQLGGTRHGWDSKDWYLNASLFLPFQELKNLSVFGNNIAGCIENEGFERLS 117

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
            L NL+ L L YN+FNN+I S     SSL++L +  N+L G ++++ L+ L +LEEL M+
Sbjct: 118 TLENLEILNLGYNNFNNNILSFFSDFSSLKSLYMNDNKLKGILNVEELNYLTSLEELKMA 177

Query: 189 DNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
            N I           F NL+ L LD S L+ S  LQSI + TSLK LS+  C LTG +
Sbjct: 178 GNQIEGFQSLNGFPVFRNLQHLYLDSSTLNNS-FLQSIGTLTSLKALSLSKCGLTGTI 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/231 (48%), Positives = 148/231 (64%), Gaps = 8/231 (3%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWER 66
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +   L +  +    +++CC WER
Sbjct: 7   VLTVLVITVSLQGWVPLGCLEEERIALLHLKDALNYPNGTSLPSWRIA---HANCCDWER 63

Query: 67  VECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126
           + CN +TGRV +L L  TRN E  +WY+NASLF PFQQL  LYL GN IAG VE +G   
Sbjct: 64  IVCNSSTGRVTELYLGSTRNEELGDWYLNASLFLPFQQLNILYLWGNRIAGWVEKKGGYE 123

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELD 186
           L +L+NL+ L L+ N FNNSI S + GL SL++L L  NRL GSID+K  +SL +LE L 
Sbjct: 124 LQKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYNRLEGSIDLK--ESLTSLETLS 181

Query: 187 MSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237
           +  N I+NLV  +EL N ++LE L LDD  L     LQS+ +  SLK LS+
Sbjct: 182 LGGNNISNLVASRELQNLSSLESLYLDDCSLD-EHSLQSLGALHSLKNLSL 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 150/238 (63%), Gaps = 9/238 (3%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECN 70
           +I ++++++GW   GCLE+ER ALLQ++  F+  +    + W  D N   CC+W++V+CN
Sbjct: 13  IINVVVLIQGWRCHGCLEEERVALLQIKDAFSYPNGSFPHSWGRDAN---CCEWKQVQCN 69

Query: 71  DTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130
            TT RV+K+DL  +R WE  +W +NASLF PF +L +L L GN IAGC+ENEG + LS L
Sbjct: 70  STTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGCLENEGFERLSVL 129

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD----SLGNLEELD 186
            NL+ L L  N FN+SIFSSLGGLSSL+NLSL  N + G+I ++G +     + NLE LD
Sbjct: 130 GNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEGGEDEVLKMSNLEYLD 189

Query: 187 MSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           +  N  +N ++       ++L+ L L+ + L  +  ++ I  F +L  + +   T  G
Sbjct: 190 LGGNRFDNSIL-SSFKGLSSLKNLGLEKNHLKGTFNMKGIRGFGNLSRVRLFNITANG 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145105|ref|XP_002336200.1| predicted protein [Populus trichocarpa] gi|222832534|gb|EEE71011.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/269 (42%), Positives = 148/269 (55%), Gaps = 30/269 (11%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERV 67
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +      W+  +  + CC WE +
Sbjct: 7   VFTVLVITVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSWIKAD--AHCCDWESI 64

Query: 68  ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL 127
            CN +TGRV +LDL   RN E  +WY+NASLF PFQQL +L L GN IAG VEN+G   L
Sbjct: 65  GCNSSTGRVTELDLWSVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGYEL 124

Query: 128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG------------ 175
            +L+NL+ L L YN FNNSI S + GL SL++L L  NRL G ID+KG            
Sbjct: 125 QKLSNLEILDLGYNSFNNSILSFVEGLPSLKSLYLDYNRLEGLIDLKGPNNLRTLSLYNI 184

Query: 176 ---------LDSLG---NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL 223
                    L SLG   NL  L +S N     ++   L N ++LEEL LD   L     L
Sbjct: 185 TTYGSSFQLLQSLGAFPNLTTLYLSSNDFRGRILGDGLQNLSSLEELYLDGCSLD-EHSL 243

Query: 224 QSIASFTSLKYLSMGFCTLTGALHGQGKL 252
           QS+ +  SLK LS+    L G +   GKL
Sbjct: 244 QSLGALHSLKNLSL--RELNGTVPSGGKL 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 146/241 (60%), Gaps = 12/241 (4%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWERVEC 69
           L+ +++ ++GW   GCLE+ER ALL L+   N  +   L +  +    ++ CC WE + C
Sbjct: 5   LVILMVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSWRIA---HAHCCDWESIVC 61

Query: 70  NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129
           N +TGRV  LDL   RN +  +WY+NASLF PFQQL  LYL  N IAG VEN+G   L +
Sbjct: 62  NSSTGRVTVLDLWGVRNEDLGDWYLNASLFLPFQQLNVLYLWNNRIAGWVENKGGSELQK 121

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
           L+NL+ LYL+ N FNNSI S + GL SL++L L  NRL G ID+K  +SL +LE L +  
Sbjct: 122 LSNLESLYLEDNSFNNSILSFVEGLPSLKSLYLSYNRLEGLIDLK--ESLSSLETLGLGG 179

Query: 190 NAINNLVIPKELHNFTNLEELILDDSDLHIS--QLLQSIASFTSLKYLSMGFCTLTGALH 247
           N I+ LV  + L   +NL  L L +   + S  QLLQS+ +F +L  L +G     G + 
Sbjct: 180 NNISKLVASRGL---SNLRYLSLYNITTYGSSFQLLQSLRAFPNLTTLYLGSNDFRGRIL 236

Query: 248 G 248
           G
Sbjct: 237 G 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142513|ref|XP_002324601.1| predicted protein [Populus trichocarpa] gi|222866035|gb|EEF03166.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 136/241 (56%), Gaps = 23/241 (9%)

Query: 25  EGCLEQERYALLQLRHFFNDDQCLQN---CWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
           EGCLE+ER ALLQ++    D   + +    W +D   + CC W  V C+  TGRVI + L
Sbjct: 23  EGCLEEERIALLQIKTSMVDPNHMGSPLLSWGED---ALCCNWAGVTCDSITGRVIVIFL 79

Query: 82  RDTRNW-------------ESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS 128
            + R W                +WY+NA++F PFQ+L +L L  N+IAGCV NEG + LS
Sbjct: 80  HNARGWFIDPSKGVWDRNASMGDWYLNATMFLPFQELNTLGLSNNDIAGCVPNEGFERLS 139

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
           RL  L+ L L  N+FNNSI SS  GLSSL+++ L  N+L GSIDIK  DSL  L+ELD+S
Sbjct: 140 RLTKLESLDLGLNNFNNSILSSFKGLSSLKHIYLESNQLKGSIDIKEFDSLSKLQELDLS 199

Query: 189 DNAINNLVIPK---ELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245
            N I NLV      E      LE L L  + ++ S  L      +SLK+L +    L G+
Sbjct: 200 RNEIQNLVTSTGSGEPSRLNKLETLDLSSNKINDST-LSFFKGLSSLKHLYLNNNQLKGS 258

Query: 246 L 246
           +
Sbjct: 259 I 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142499|ref|XP_002324594.1| predicted protein [Populus trichocarpa] gi|222866028|gb|EEF03159.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 124/199 (62%), Gaps = 8/199 (4%)

Query: 3   GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFF----NDDQCLQNCWVDDENY 58
           G  R  +  +  ++++     S+GCLE+ER ALLQ++  F    ND       W  D   
Sbjct: 2   GLNRFSLPAVAVMVMINAMLLSQGCLEEERIALLQIKTSFGDHPNDIASPLFSWGKD--- 58

Query: 59  SDCCQWERVEC-NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG 117
           + CC W+RV C N TT RVI+++L  TR+    + Y+NAS+F PFQ+L  L L GN IAG
Sbjct: 59  ALCCSWKRVTCSNSTTRRVIEINLYFTRDRSMEDLYLNASIFLPFQELNVLDLSGNGIAG 118

Query: 118 CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD 177
           CV NEG + LSRL  L+ L L  N+FNNSI SS+ GLSSL+ L+L  N+L GSID K  D
Sbjct: 119 CVANEGFERLSRLAKLEVLLLSDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTKEFD 178

Query: 178 SLGNLEELDMSDNAINNLV 196
           SL NLEEL ++ N I + V
Sbjct: 179 SLSNLEELSLAKNEIQDFV 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 144/240 (60%), Gaps = 12/240 (5%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECN 70
           L+ +++ ++GW   GCL++ER ALLQL+   N  +      W+  +  + CC WER+EC 
Sbjct: 12  LVIMMVSLQGWLPLGCLDEERIALLQLKDSLNYPNGTSLPSWIKAD--AHCCSWERIEC- 68

Query: 71  DTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130
            +TGRV +L L +TRN E  +WY+NASL  PFQ+L++L L GN +AG VE +G   L RL
Sbjct: 69  -STGRVTELHLEETRNEELGDWYLNASLLLPFQELKALNLRGNRLAGWVEKKGGYELQRL 127

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
            NL +L L  N F+NSI S + G  SL++L L  NRL G ID+K  +SL +LE L +S N
Sbjct: 128 RNLDYLNLRSNSFDNSILSYVEGFPSLKSLYLDYNRLEGLIDLK--ESLSSLEVLGLSGN 185

Query: 191 AINNLVIPKELHNFTNLEELILDDSDLHIS--QLLQSIASFTSLKYLSMGFCTLTGALHG 248
            I+ LV  +     +NL  L L D   + S  QLLQS+ +F SL  L +      G + G
Sbjct: 186 NIDKLVASR---GPSNLTTLYLHDITTYESSFQLLQSLGAFPSLMTLYLNKNDFRGRILG 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  154 bits (389), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/244 (46%), Positives = 147/244 (60%), Gaps = 32/244 (13%)

Query: 5   KRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQW 64
           K VW+  L   L++ +    +GCL++ER ALLQL+ FF+    LQ  W+  E+  DCCQW
Sbjct: 4   KWVWMGVL---LVLSETCCCKGCLDKERAALLQLKPFFDSTLALQK-WLGAEDNLDCCQW 59

Query: 65  ERVECNDTTGRVIKLDLRDTRNWESAE-WYMNASLFTPFQQLESLYLIGNNIAGCVENEG 123
           ERVEC+  TGRV +LDL  TR ++S+  WY+NASLF PF++L+SL L GN+I  CVENEG
Sbjct: 60  ERVECSSITGRVTRLDLDTTRAYQSSRNWYLNASLFLPFEELKSLSLKGNSIVDCVENEG 119

Query: 124 LDTLS-RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL 182
            + LS RL++L+ L L YN FN SI SSL   SSL++L+L  N     + I+  D     
Sbjct: 120 FERLSTRLSSLEVLDLSYNSFNESILSSLSEFSSLKSLNLGFNPF--EVPIQAQD----- 172

Query: 183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 242
                             L NF NLEEL LD  +L  S  LQ++   TSLK LS+  C L
Sbjct: 173 ------------------LPNFENLEELYLDKIELENS-FLQTVGVMTSLKVLSLSGCGL 213

Query: 243 TGAL 246
           TGAL
Sbjct: 214 TGAL 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 140/244 (57%), Gaps = 12/244 (4%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWER 66
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +   L +  +   N   CC WER
Sbjct: 7   VLTVLVITVSLQGWLPLGCLEEERIALLHLKDSLNYPNGTSLPSWRIAHAN---CCDWER 63

Query: 67  VECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126
           + CN +TGRV  LDL   RN E  +WY+NASLF PFQQL +L L GN IAG VEN+G   
Sbjct: 64  IVCNSSTGRVTLLDLLGVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGSE 123

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELD 186
           L +L+NL+ LYL YN F+N+I S + GL SL++L L  NRL G ID+K   S      LD
Sbjct: 124 LQKLSNLEILYLGYNSFDNTILSFVEGLPSLKSLYLNYNRLEGLIDLKESLSSLETLSLD 183

Query: 187 MSDNAINNLVIPKELHNFTNLEELILDDSDLHIS--QLLQSIASFTSLKYLSMGFCTLTG 244
              N I+ LV  +     +NL  L L +   + S  QLLQ + +F +L  L +G     G
Sbjct: 184 --GNNISKLVASR---GPSNLRTLSLYNITTYGSSFQLLQLLGAFQNLTTLYLGSNDFRG 238

Query: 245 ALHG 248
            + G
Sbjct: 239 RILG 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.878	0.236	0.330	1.6e-22
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.779	0.219	0.333	1.6e-20
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.825	0.238	0.303	5.2e-20
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.882	0.240	0.278	6.1e-18
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.798	0.222	0.282	6.3e-16
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.882	0.273	0.294	1.1e-12
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.494	0.179	0.326	1.5e-11
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.737	0.247	0.309	5.7e-10
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.828	0.249	0.269	1.3e-09
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.798	0.241	0.256	6e-09

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 85/257 (33%), Positives = 130/257 (50%)

Query:     3 GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFF---NDDQCLQNC---WVDDE 56
             G   +WV   + +L+ ++G+  + C+E+ER ALL+L+ +      D  L +    W +D 
Sbjct:     8 GQNLIWV---MLLLVQLRGY--KCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDT 62

Query:    57 NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIG---N 113
               S+CC+WE ++CN T+GR+I+L +  T   ES+   +N SL  PF++L SL L G   N
Sbjct:    63 K-SNCCRWEGLKCNQTSGRIIELSIGQTNFKESS--LLNLSLLHPFEELRSLNLSGEIYN 119

Query:   114 NIAGCVEN-EGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSID 172
                G  ++ EG ++L RL NL+ L L  N F                         G + 
Sbjct:   120 EFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLP 179

Query:   173 IKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL-ILDDSDLHISQL--LQSIASF 229
             IK L +L  LE LD+S +  N   IP+    FT+LE+L  LD S    S L  LQ +   
Sbjct:   180 IKELKNLTKLELLDLSRSGYNGS-IPE----FTHLEKLKALDLSANDFSSLVELQELKVL 234

Query:   230 TSLKYLSMGFCTLTGAL 246
             T+L+ L + +  L G +
Sbjct:   235 TNLEVLGLAWNHLDGPI 251

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 74/222 (33%), Positives = 108/222 (48%)

Query:    27 CLEQERYALLQLRHFFND-------DQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKL 79
             C+E+ER ALL+L+ +          D  L   W +D   SDCCQW+ ++CN T+GRVI+L
Sbjct:    13 CIEKEREALLELKKYLMSRSRESGLDYVLPT-WTNDTK-SDCCQWDGIKCNRTSGRVIEL 70

Query:    80 DLRDTRNWESAEWYMNASLFTPFQQLESLYLI--G-NNIAGCVEN-EGLDTLSRLNNLKF 135
              + D    ES+   +N SL  PF+++ SL L   G N   G  ++ EG  +LS L NLK 
Sbjct:    71 SVGDMYFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKI 128

Query:   136 LYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNL 195
             + L  N+F                         G   IKGL  L NLE LD+  N +N  
Sbjct:   129 MDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRANKLNGS 188

Query:   196 VIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237
             +  +EL +   L+ L L  +    S  LQ + +  +L+ L +
Sbjct:   189 M--QELIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGL 228

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 69/227 (30%), Positives = 106/227 (46%)

Query:    27 CLEQERYALLQLRHFFND--DQCLQNC----WVDDENYSDCCQWERVECNDTTGRVIKLD 80
             C+E+ER ALL+L+ F     ++C  +     W +D   SDCCQWE ++CN T+ R+  L 
Sbjct:    13 CIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK-SDCCQWENIKCNRTSRRLTGLS 71

Query:    81 LRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVEN-EGLDTLSRLNNLKFLYLD 139
             L  +   E +   +N SL  PF+++ SL L  + + G V++ EG  +L RL NL+ L   
Sbjct:    72 LYTSYYLEIS--LLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFS 129

Query:   140 YNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNLVIPK 199
              N F                         G I +K L +L NLE LD+S N I+  +  +
Sbjct:   130 SNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNLELLDLSGNRIDGSMPVR 189

Query:   200 ELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
             E      L+ L L  + ++ S   Q      +L+ L +      G L
Sbjct:   190 EFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVGQL 236

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 6.1e-18, P = 6.1e-18
 Identities = 68/244 (27%), Positives = 110/244 (45%)

Query:     3 GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLR-HFFN--DDQCLQNCWVDDENYS 59
             G   +WV   + ++  + G+ S  C+++E+ AL +LR H  +  + + +   W +D   S
Sbjct:     8 GHNLIWV---MLLMGQLHGYKS--CIDEEKIALFELRKHMISRTESESVLPTWTNDTT-S 61

Query:    60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCV 119
             DCC+W+ V CN  +GRV ++        +++   +N SL  PF+ + SL L  +  +G  
Sbjct:    62 DCCRWKGVACNRVSGRVTEISFGGLSLKDNS--LLNLSLLHPFEDVRSLNLSSSRCSGLF 119

Query:   120 EN-EGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDS 178
             ++ EG  +L +L  L+ L L  N F                         GS   K L  
Sbjct:   120 DDVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRD 179

Query:   179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMG 238
             L NLE LD+S N  N  +  +EL +   L+ L L  ++   S  LQ       L  +  G
Sbjct:   180 LTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSG 239

Query:   239 FCTL 242
              C L
Sbjct:   240 ICEL 243

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 66/234 (28%), Positives = 106/234 (45%)

Query:    27 CLEQERYALLQLRHFF------NDDQCLQN-CWVDDE-------NYSDCCQWERVECNDT 72
             CL ++R ALL+L++ F      ++D C +N   V          N SDCC WE + C+  
Sbjct:    38 CLPEQRDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESWRNNSDCCNWEGITCDTK 97

Query:    73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN 132
             +G VI+LDL  + +W    ++ N+SLF   Q L  L L  N++ G + +    ++  L++
Sbjct:    98 SGEVIELDL--SCSWLYGSFHSNSSLFR-LQNLRVLDLTQNDLDGEIPS----SIGNLSH 150

Query:   133 LKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAI 192
             L  L+L YN F                         G I    + +L +L  L++S N  
Sbjct:   151 LTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIP-SSIGNLSHLTSLELSSNQF 209

Query:   193 NNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
             +   IP  + N +NL  L L  +D    Q+  SI +   L YL + +    G +
Sbjct:   210 SGQ-IPSSIGNLSNLTFLSLPSNDF-FGQIPSSIGNLARLTYLYLSYNNFVGEI 261

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 75/255 (29%), Positives = 110/255 (43%)

Query:     1 MCGSKRVWVSE---LIFILLVVKGWWSEG---CLEQERYALLQLRHFF--NDDQCLQNCW 52
             M  S R WV     +IF+ L+V    S     C + +R ALL+ R  F  N    + N W
Sbjct:     2 MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query:    53 VDDENYS-DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
                 N S DCC W  V CND +G+VI LD+ +T  + +     N+SLF   Q L  L L 
Sbjct:    62 RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNT--FLNNYLKTNSSLFK-LQYLRHLDLT 118

Query:   112 GNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSI 171
               N+ G + +    +L  L++L  + L +N F                         G I
Sbjct:   119 NCNLYGEIPS----SLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEI 174

Query:   172 DIKGLDSLGNLEELDMSDNAINNLV--IPKELHNFTNLEELILDDSDLHISQLLQSIASF 229
                   SLGNL  L   +   N LV  IP  + +   L  L L  ++L I ++  S+ + 
Sbjct:   175 P----SSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNL-IGEIPSSLGNL 229

Query:   230 TSLKYLSMGFCTLTG 244
             ++L +L +    L G
Sbjct:   230 SNLVHLVLTHNQLVG 244

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 47/144 (32%), Positives = 70/144 (48%)

Query:     2 CGSKR----VWVSELIFILL-VVKGWWSEGCLEQERYALLQLRHFF--NDDQCLQNCWVD 54
             C  +R    +W   LIF L   +     + CL  +R ALL+ ++ F   +      C   
Sbjct:     4 CSERRMMTVIWSLCLIFCLSNSILAIAKDLCLPDQRDALLEFKNEFYVQEFDPHMKCEKA 63

Query:    55 DE---NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
              E   N +DCC W RV C+  TG+V++LDL  +    +     N+SLF   Q L+SL L 
Sbjct:    64 TETWRNKTDCCSWNRVSCDPKTGKVVELDLMSS--CLNGPLRSNSSLFR-LQHLQSLELS 120

Query:   112 GNNIAGCVENEGLDTLSRLNNLKF 135
              NNI+G +  + +  L  L +L F
Sbjct:   121 SNNISGILP-DSIGNLKYLRSLSF 143

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 65/210 (30%), Positives = 91/210 (43%)

Query:    27 CLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRN 86
             C   +R  LL+ R  F   +   + W      +DCC W+ V C+D +G+VI LDLR T  
Sbjct:    32 CRHDQRDGLLKFRDEFPIFESKSSPW---NKTTDCCSWDGVTCDDKSGQVISLDLRSTLL 88

Query:    87 WESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFXXX 146
               S +   N+SLF   Q L  L L G N+ G + +  L  LSRL NL+   L  N     
Sbjct:    89 NSSLK--TNSSLFR-LQYLRHLDLSGCNLHGEIPSS-LGNLSRLENLE---LSSNRLVGE 141

Query:   147 XXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206
                                   G I    L +L  L +LD+ +N++   V P  + N   
Sbjct:   142 IPYSIGNLKQLRNLSLGDNDLIGEIP-SSLGNLSLLLDLDLWNNSLVGEV-PASIGNLNE 199

Query:   207 LEELILDDSDLHISQLLQSIASFTSLKYLS 236
             L  + LD + L  S  +    SFT+L  LS
Sbjct:   200 LRVMSLDRNSLSGSIPI----SFTNLTKLS 225

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 66/245 (26%), Positives = 101/245 (41%)

Query:    27 CLEQERYALLQLRHFFNDDQCLQNC--------WVDDENYSDCCQWERVECNDTTGRVIK 78
             C  ++R ALL+ ++ F   +    C        W   EN SDCC W+ + C+  TG VI+
Sbjct:    30 CHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSW---ENGSDCCHWDGITCDAKTGEVIE 86

Query:    79 LDLRDT--RNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFL 136
             +DL  +    W  +    N S+   F  L +L L  N+++G + +    ++  L++L  L
Sbjct:    87 IDLMCSCLHGWFHSN--SNLSMLQNFHFLTTLDLSYNHLSGQISS----SIGNLSHLTTL 140

Query:   137 YLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNLV 196
              L  N+F                         G I      SLGNL  L   D + NN V
Sbjct:   141 DLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIP----SSLGNLSYLTFLDLSTNNFV 196

Query:   197 --IPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQ-GKLR 253
               IP    +   L  L LD++ L    L   + + T L  +S+     TG L      L 
Sbjct:   197 GEIPSSFGSLNQLSILRLDNNKLS-GNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLS 255

Query:   254 VSEAF 258
             + E+F
Sbjct:   256 ILESF 260

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 58/226 (25%), Positives = 96/226 (42%)

Query:    27 CLEQERYALLQLRHFFNDDQ-CLQNCWVDDE---NYSDCCQWERVECNDTTGRVIKLDLR 82
             C  ++R ALL+L+  F   + C        E   N SDCC W+ + CND +G V++LDL 
Sbjct:    39 CRLEQRDALLELKKEFKIKKPCFDGLHPTTESWANNSDCCYWDGITCNDKSGEVLELDL- 97

Query:    83 DTRNWESAEWYMNASLFTPFQQ--LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDY 140
              +R+   + ++ N+SLFT      L +L L  N  +G + +  ++  S L  L    L  
Sbjct:    98 -SRSCLQSRFHSNSSLFTVLNLRFLTTLDLSYNYFSGQIPS-CIENFSHLTTLD---LSK 152

Query:   141 NHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE 200
             N+F                         G +   G  ++  L  L +  N +   + P  
Sbjct:   153 NYFSGGIPSSIGNLSQLTFLDLSGNEFVGEMPFFG--NMNQLTNLYVDSNDLTG-IFPLS 209

Query:   201 LHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
             L N  +L +L L  +      L  +++S ++L+Y        TG L
Sbjct:   210 LLNLKHLSDLSLSRNQF-TGTLPSNMSSLSNLEYFEAWGNAFTGTL 254

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 12/144 (8%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
           T    LE L L  N + G +  E    L ++ +LK++YL YN+ +  I   +GGL+SL +
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 160 LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKELHNFTNLEELILDDSDL 217
           L L+ N L G I      SLGNL+ L       N L   IP  + +   L  L L D+ L
Sbjct: 241 LDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 218 --HISQLLQSIASFTSLKYLSMGF 239
              I +L+  + +   L   S  F
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNF 320

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 17/114 (14%)

Query: 64  WERVEC--NDTTGRVI----KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG 117
           W   +C  + T G+       LD +  R +   +        +  + L+S+ L GN+I G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI-------SKLRHLQSINLSGNSIRG 456

Query: 118 CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI 171
            +      +L  + +L+ L L YN FN SI  SLG L+SLR L+L GN L G +
Sbjct: 457 NIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 34/210 (16%)

Query: 59  SDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGNNIAG 117
           +D C W+ + CN+++ RV+ +DL    + ++    +++++F  P+  ++++ L  N ++G
Sbjct: 55  ADVCLWQGITCNNSS-RVVSIDL----SGKNISGKISSAIFRLPY--IQTINLSNNQLSG 107

Query: 118 CVENEGLDTLSRLN-------------------NLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            + ++   T S L                    NL+ L L  N  +  I + +G  SSL+
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKELHNFTNLEELILDDSD 216
            L L GN L+G I      SL NL  L+    A N LV  IP+EL    +L+ + L  ++
Sbjct: 168 VLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 217 LHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
           L   ++   I   TSL +L + +  LTG +
Sbjct: 224 LS-GEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 26/148 (17%)

Query: 70  NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129
           N+  GR+      ++R W+                L+ L L  N   G     GL     
Sbjct: 438 NNLQGRI------NSRKWD-------------MPSLQMLSLARNKFFG-----GLPDSFG 473

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
              L+ L L  N F+ ++   LG LS L  L L  N+L G I    L S   L  LD+S 
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSH 532

Query: 190 NAINNLVIPKELHNFTNLEELILDDSDL 217
           N ++   IP        L +L L  + L
Sbjct: 533 NQLSG-QIPASFSEMPVLSQLDLSQNQL 559

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           S+F+  Q+L SL L  N+++G    E  + + +L NL+ L+L  N+F   I  +L  L  
Sbjct: 279 SIFS-LQKLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216
           L+ L L  N+  G I  K L    NL  LD+S N +    IP+ L +  NL +LIL  + 
Sbjct: 334 LQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTG-EIPEGLCSSGNLFKLILFSNS 391

Query: 217 LHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
           L   ++ +S+ +  SL+ + +   + +G L
Sbjct: 392 LE-GEIPKSLGACRSLRRVRLQDNSFSGEL 420

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 11/144 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
           LE+L L  N ++G + N+    +   ++LK L L  N     I +SL  L+SL  L+L  
Sbjct: 142 LETLDLSNNMLSGEIPND----IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKELHNFTNLEELILDDSDLHISQL 222
           N+L+G I  +    LG ++ L       NNL   IP E+   T+L  L L  ++L    +
Sbjct: 198 NQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-TGPI 252

Query: 223 LQSIASFTSLKYLSMGFCTLTGAL 246
             S+ +  +L+YL +    L+G +
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPI 276

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 16/179 (8%)

Query: 68  ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL 127
             +  T R +          +S               +  L L  ++      N  L   
Sbjct: 11  ALSSNTLREVLSSNTYHTTPQSIN-LNFPDSNLESVAVNRLALNLSS------NTLLLLP 63

Query: 128 SRLNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL 185
           S L+ L  L L      +S     +L  L  L +L L  NRL    +I  L  L NL  L
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRS--NISELLELTNLTSL 121

Query: 186 DMSDNAINNLVIPKELHNFT-NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           D+ +N I +  IP  +     NL+EL L D+   I  L   + +  +LK L + F  L+
Sbjct: 122 DLDNNNITD--IPPLIGLLKSNLKELDLSDNK--IESLPSPLRNLPNLKNLDLSFNDLS 176

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 125 DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184
             +  L+ L+ L L  N     + SSL  L +L  L L  N+L    +  G  S  NLE 
Sbjct: 203 PEIELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPESIGNLS--NLET 259

Query: 185 LDMSDNAINNLVIPKELHNFTNL 207
           LD+S+N I+++     L N   L
Sbjct: 260 LDLSNNQISSISSLGSLTNLREL 282

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 11/136 (8%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L SL L  N +        +  L  L NL  L LD N+  +         S+L+ L L 
Sbjct: 94  PLPSLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS 148

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL 223
            N++        L +L NL+ LD+S N +++  +PK L N +NL  L L  +   IS L 
Sbjct: 149 DNKI--ESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNK--ISDLP 202

Query: 224 QSIASFTSLKYLSMGF 239
             I   ++L+ L +  
Sbjct: 203 PEIELLSALEELDLSN 218

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           NLK L L  N        +  GL +L+ L L GN L  SI  +    L +L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 192 I 192
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 28 LEQERYALLQLRHFFNDD--QCLQNCWVDDENYSDCCQWERVECN 70
          L  +R ALL  +   N D    L + W  + + SD C W  V C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSS-W--NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.73
PLN03150	623	hypothetical protein; Provisional	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.67
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.58
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.46
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.41
PLN03150	623	hypothetical protein; Provisional	99.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.38
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.26
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.22
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.22
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.88
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.86
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.4
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.77
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.72
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.72
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.68
PRK15386	426	type III secretion protein GogB; Provisional	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.41
PRK15386	426	type III secretion protein GogB; Provisional	97.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.5
KOG4308	478	consensus LRR-containing protein [Function unknown	96.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.32
KOG4308	478	consensus LRR-containing protein [Function unknown	95.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.56
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.58
smart00370	26	LRR Leucine-rich repeats, outliers.	93.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.34
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.68
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.64
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.58
smart00370	26	LRR Leucine-rich repeats, outliers.	92.58
KOG4341	483	consensus F-box protein containing LRR [General fu	91.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.94
KOG4341	483	consensus F-box protein containing LRR [General fu	84.13
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.22
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.07
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.81

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2.3e-29  Score=242.38  Aligned_cols=209  Identities=26%  Similarity=0.401  Sum_probs=131.7

Q ss_pred             cHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCCCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcE
Q 024731           28 LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLES  107 (263)
Q Consensus        28 ~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~  107 (263)
                      +++|+.||++||+++.++.....+|+   ...+||.|.||.|++ .++|+.++++++.+..  .   .+..+..+++|+.
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~--~---~~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISG--K---ISSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccc--c---CChHHhCCCCCCE
Confidence            56899999999999975555678997   467899999999985 5799999999988742  1   1234555666666


Q ss_pred             EEccCcccCCCCCccccc-------------------ccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC
Q 024731          108 LYLIGNNIAGCVENEGLD-------------------TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI  168 (263)
Q Consensus       108 L~l~~n~l~~~~~~~~~~-------------------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  168 (263)
                      |++++|.+.+.+|...+.                   ....+++|++|++++|.+++.+|..++++++|++|++++|.+.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            666666665544432100                   0123444555555555555555555666666666666666665


Q ss_pred             CCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          169 GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       169 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +.+|. .+.++++|++|++++|.+.+.+|.. ++++++|++|++++|.+++.. |..++++++|++|++++|.+++.+|.
T Consensus       178 ~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        178 GKIPN-SLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             ccCCh-hhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcC-ChhHhcCCCCCEEECcCceeccccCh
Confidence            55555 5556666666666666665555444 556666666666666665555 55566666666666666666555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=1.5e-20  Score=181.46  Aligned_cols=143  Identities=31%  Similarity=0.387  Sum_probs=74.3

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      ++.+++|++|++++|.+.+..|..    +.++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|. .+..
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~  234 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGG  234 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChh----hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhc
Confidence            444555555555555555444432    44555555555555555555555555555555555555555544444 4555


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +++|++|++++|.+.+.+|.. ++++++|++|++++|.+++.. |..+..+++|++|++++|.+++.+|.
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~  302 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPE  302 (968)
T ss_pred             CCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCCh
Confidence            555555555555555444443 555555555555555555444 44555555555555555555554444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=1.1e-21  Score=145.95  Aligned_cols=163  Identities=25%  Similarity=0.307  Sum_probs=142.4

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      ...++.+.+++|.+.      +.+..++.+.+|+.|++++|+++..++.     ++.+++|+.|+++.|.+. ..|..|+
T Consensus        32 ~s~ITrLtLSHNKl~------~vppnia~l~nlevln~~nnqie~lp~~-----issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT------VVPPNIAELKNLEVLNLSNNQIEELPTS-----ISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             hhhhhhhhcccCcee------ecCCcHHHhhhhhhhhcccchhhhcChh-----hhhchhhhheecchhhhh-cCccccC
Confidence            457889999999885      3355689999999999999999877665     899999999999999998 8899999


Q ss_pred             CCCCCCEEEcCCCcCCCC-cCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731          153 GLSSLRNLSLIGNRLIGS-IDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS  231 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  231 (263)
                      .++.|++||+.+|++... +|. .|..+..|+.|+++.|.+.- +|+. ++++++|+.|.+.+|.+- .. |..++.+++
T Consensus       100 s~p~levldltynnl~e~~lpg-nff~m~tlralyl~dndfe~-lp~d-vg~lt~lqil~lrdndll-~l-pkeig~lt~  174 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPG-NFFYMTTLRALYLGDNDFEI-LPPD-VGKLTNLQILSLRDNDLL-SL-PKEIGDLTR  174 (264)
T ss_pred             CCchhhhhhccccccccccCCc-chhHHHHHHHHHhcCCCccc-CChh-hhhhcceeEEeeccCchh-hC-cHHHHHHHH
Confidence            999999999999998754 565 88899999999999999987 7777 999999999999999986 45 899999999


Q ss_pred             CCEEEecCcccccccCccchhcH
Q 024731          232 LKYLSMGFCTLTGALHGQGKLRV  254 (263)
Q Consensus       232 L~~L~l~~n~l~~~~p~~~l~~L  254 (263)
                      |++|++.+|+++ .+|+ .+.++
T Consensus       175 lrelhiqgnrl~-vlpp-el~~l  195 (264)
T KOG0617|consen  175 LRELHIQGNRLT-VLPP-ELANL  195 (264)
T ss_pred             HHHHhcccceee-ecCh-hhhhh
Confidence            999999999999 5565 34444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.73  E-value=2.4e-18  Score=149.29  Aligned_cols=173  Identities=24%  Similarity=0.261  Sum_probs=120.9

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .+.+++|++|+++..     ....|..+.+|..|.|+.|+++..++.    .|+++++|+.|+|..|.+...--..|.++
T Consensus       174 ni~~L~La~N~It~l-----~~~~F~~lnsL~tlkLsrNrittLp~r----~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  174 NIKKLNLASNRITTL-----ETGHFDSLNSLLTLKLSRNRITTLPQR----SFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             CceEEeecccccccc-----ccccccccchheeeecccCcccccCHH----HhhhcchhhhhhccccceeeehhhhhcCc
Confidence            345555555555432     233455666666666666666655443    26667777777777777653223456667


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      ++|+.|.+..|.+. .+....|..+.++++|+|+.|++... -.+++.++++|++|++++|.|.... ++.+...++|++
T Consensus       245 ~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~  321 (873)
T KOG4194|consen  245 PSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKE  321 (873)
T ss_pred             hhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhh-hcccccccchhhhhccchhhhheee-cchhhhccccee
Confidence            77777777777765 34444777888899999999988773 4455888999999999999998655 889999999999


Q ss_pred             EEecCcccccccCccchhcHHHHHHH
Q 024731          235 LSMGFCTLTGALHGQGKLRVSEAFMI  260 (263)
Q Consensus       235 L~l~~n~l~~~~p~~~l~~L~~L~~~  260 (263)
                      |+|++|+++ .+++..|..|+.|..+
T Consensus       322 LdLs~N~i~-~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  322 LDLSSNRIT-RLDEGSFRVLSQLEEL  346 (873)
T ss_pred             Eeccccccc-cCChhHHHHHHHhhhh
Confidence            999999998 5666566666666554

>PLN03150 hypothetical protein; Provisional

Probab=99.69  E-value=3.4e-16  Score=143.58  Aligned_cols=157  Identities=29%  Similarity=0.377  Sum_probs=100.1

Q ss_pred             cCCCcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCCCCCceEEcCC--C--CcEEEEecCCCCCccccccccccccc
Q 024731           24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDT--T--GRVIKLDLRDTRNWESAEWYMNASLF   99 (263)
Q Consensus        24 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~~~~~~~~~   99 (263)
                      ...+.++|.+||..+|+.+..+.  ..+|.+..+.+..|.|.||.|...  .  ..|+.|+|+++.+.  |.   .+..+
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--g~---ip~~i  438 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--GF---IPNDI  438 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCcc--cc---CCHHH
Confidence            34677889999999999986332  248972111111237999999531  1  24677777777663  22   13345


Q ss_pred             cCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC-
Q 024731          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS-  178 (263)
Q Consensus       100 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-  178 (263)
                      ..+++|+.|+|++|.+.+.+|..    +..+++|+.|+|++|++++.+|..++++++|++|++++|.++|.+|. .+.. 
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~  513 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGR  513 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhc
Confidence            66677777777777776666643    66677777777777777777777777777777777777777766665 4443 


Q ss_pred             CCCCCEEEcCCCCC
Q 024731          179 LGNLEELDMSDNAI  192 (263)
Q Consensus       179 l~~L~~L~L~~n~l  192 (263)
                      ..++..+++.+|..
T Consensus       514 ~~~~~~l~~~~N~~  527 (623)
T PLN03150        514 LLHRASFNFTDNAG  527 (623)
T ss_pred             cccCceEEecCCcc
Confidence            23455666666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.6e-18  Score=129.27  Aligned_cols=150  Identities=26%  Similarity=0.332  Sum_probs=129.6

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      +..+..++.|.+++|.++...|.     +..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|. .|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppn-----ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPN-----IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGS  100 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCc-----HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCC
Confidence            45677889999999999987776     789999999999999998 78999999999999999999987 6787 9999


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      ++.|+.||+.+|++.....++.|..++.|+.|++++|.+. .. |..++++++|+.|.+..|.+- .+|. .+..|+.|.
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~l-p~dvg~lt~lqil~lrdndll-~lpk-eig~lt~lr  176 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-IL-PPDVGKLTNLQILSLRDNDLL-SLPK-EIGDLTRLR  176 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cC-ChhhhhhcceeEEeeccCchh-hCcH-HHHHHHHHH
Confidence            9999999999999976654555778889999999999996 45 899999999999999999987 6787 455555554


Q ss_pred             HH
Q 024731          259 MI  260 (263)
Q Consensus       259 ~~  260 (263)
                      .+
T Consensus       177 el  178 (264)
T KOG0617|consen  177 EL  178 (264)
T ss_pred             HH
Confidence            44

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.67  E-value=3.4e-17  Score=142.28  Aligned_cols=176  Identities=22%  Similarity=0.254  Sum_probs=130.1

Q ss_pred             CCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC
Q 024731           72 TTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL  151 (263)
Q Consensus        72 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  151 (263)
                      ..++++.++|.+|.+..     +..+.+..++.|+.||||.|.|+....+    +|..-.++++|+|++|.|+..-...|
T Consensus       123 ~sghl~~L~L~~N~I~s-----v~se~L~~l~alrslDLSrN~is~i~~~----sfp~~~ni~~L~La~N~It~l~~~~F  193 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISS-----VTSEELSALPALRSLDLSRNLISEIPKP----SFPAKVNIKKLNLASNRITTLETGHF  193 (873)
T ss_pred             cccceeEEeeecccccc-----ccHHHHHhHhhhhhhhhhhchhhcccCC----CCCCCCCceEEeeccccccccccccc
Confidence            35788999999998753     4456678888999999999988765443    36777889999999999987767788


Q ss_pred             CCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731          152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS  231 (263)
Q Consensus       152 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  231 (263)
                      .++.+|..|.|+.|+++ .+|...|.+++.|+.|+|..|.+.-.-... |..+++|+.|.+..|.+.... ...|-.+.+
T Consensus       194 ~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~k  270 (873)
T KOG4194|consen  194 DSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLD-DGAFYGLEK  270 (873)
T ss_pred             cccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCccccc-Ccceeeecc
Confidence            88889999999999987 567768888999999999998876532222 677777777777777776443 455666777


Q ss_pred             CCEEEecCcccccccCccchhcHHHHHHH
Q 024731          232 LKYLSMGFCTLTGALHGQGKLRVSEAFMI  260 (263)
Q Consensus       232 L~~L~l~~n~l~~~~p~~~l~~L~~L~~~  260 (263)
                      +++|+|..|+++ .+-.+++-+|+.|+++
T Consensus       271 me~l~L~~N~l~-~vn~g~lfgLt~L~~L  298 (873)
T KOG4194|consen  271 MEHLNLETNRLQ-AVNEGWLFGLTSLEQL  298 (873)
T ss_pred             cceeecccchhh-hhhcccccccchhhhh
Confidence            777777777776 3444455555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.58  E-value=2e-16  Score=138.81  Aligned_cols=141  Identities=27%  Similarity=0.316  Sum_probs=72.4

Q ss_pred             ccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC-CCcCccc
Q 024731           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI-GSIDIKG  175 (263)
Q Consensus        97 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~  175 (263)
                      +.|.+++.|-.||||+|++...+|.     ...+.+|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|. .
T Consensus       144 ~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-s  217 (1255)
T KOG0444|consen  144 SLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-S  217 (1255)
T ss_pred             hHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-c
Confidence            3455555555555555555544443     445555555555555543211112222333333333333211 12444 5


Q ss_pred             cCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          176 LDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       176 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +..+.+|..+|++.|++.. +|.. +.++++|+.|+|++|+|+. . ....+...+|++|++|.|+++ .+|+
T Consensus       218 ld~l~NL~dvDlS~N~Lp~-vPec-ly~l~~LrrLNLS~N~ite-L-~~~~~~W~~lEtLNlSrNQLt-~LP~  285 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLPI-VPEC-LYKLRNLRRLNLSGNKITE-L-NMTEGEWENLETLNLSRNQLT-VLPD  285 (1255)
T ss_pred             hhhhhhhhhccccccCCCc-chHH-HhhhhhhheeccCcCceee-e-eccHHHHhhhhhhccccchhc-cchH
Confidence            5556666666666666655 4444 6666666666666666652 2 334455555666666666665 4555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.54  E-value=3.2e-16  Score=137.51  Aligned_cols=153  Identities=24%  Similarity=0.283  Sum_probs=80.3

Q ss_pred             EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccc-cCCCC
Q 024731           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGL  154 (263)
Q Consensus        76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l  154 (263)
                      ++++++..|++...|.    +..+..+..|+.||||+|++...+..     +..-+++-+|+||+|+|. .+|. .|.++
T Consensus        80 LRsv~~R~N~LKnsGi----P~diF~l~dLt~lDLShNqL~EvP~~-----LE~AKn~iVLNLS~N~Ie-tIPn~lfinL  149 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGI----PTDIFRLKDLTILDLSHNQLREVPTN-----LEYAKNSIVLNLSYNNIE-TIPNSLFINL  149 (1255)
T ss_pred             hHHHhhhccccccCCC----Cchhcccccceeeecchhhhhhcchh-----hhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence            3444444454443332    23344555555566666655443222     444455555555555555 3333 33455


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC-------------------------CCchhhhcCCCCCcE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN-------------------------LVIPKELHNFTNLEE  209 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-------------------------~~~~~~l~~l~~L~~  209 (263)
                      ..|-+|||++|++. .+|+ ....+..|++|+|++|.+..                         .+|.. +..+.+|..
T Consensus       150 tDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~d  226 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRD  226 (1255)
T ss_pred             HhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhh
Confidence            55555555555544 3444 44555555555555554322                         12332 555556666


Q ss_pred             EEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731          210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       210 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      +|++.|.+. .. |+.+-++++|+.|+||+|+++
T Consensus       227 vDlS~N~Lp-~v-Pecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  227 VDLSENNLP-IV-PECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             ccccccCCC-cc-hHHHhhhhhhheeccCcCcee
Confidence            666666665 33 666677777777777777766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.53  E-value=8.6e-16  Score=127.92  Aligned_cols=171  Identities=22%  Similarity=0.257  Sum_probs=120.3

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccC-CcCCcccccc-
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSS-  150 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~-  150 (263)
                      ....++|+|..|++..     +++..|..+++|+.|||++|+|+...|..    |.+++++..|-+.+ |+|+...-.. 
T Consensus        66 P~~tveirLdqN~I~~-----iP~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISS-----IPPGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             CCcceEEEeccCCccc-----CChhhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            3467899999998863     56778999999999999999998777754    66666665555544 6655321122 


Q ss_pred             -----------------------------------------------CCCCCCCCEEEcCCCcC----------------
Q 024731          151 -----------------------------------------------LGGLSSLRNLSLIGNRL----------------  167 (263)
Q Consensus       151 -----------------------------------------------l~~l~~L~~L~L~~n~l----------------  167 (263)
                                                                     |..+..++.+.+..|.+                
T Consensus       137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence                                                           22333333333333321                


Q ss_pred             ---------------------------------------------CCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhc
Q 024731          168 ---------------------------------------------IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELH  202 (263)
Q Consensus       168 ---------------------------------------------~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~  202 (263)
                                                                   .+..|...|..+++|+.|+|++|.++. +.+.+|.
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe  295 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFE  295 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhc
Confidence                                                         112333456678999999999999988 4455689


Q ss_pred             CCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731          203 NFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS  255 (263)
Q Consensus       203 ~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~  255 (263)
                      ...+++.|.|..|++.... ...|.++..|+.|+|.+|+|+...|. .|..+.
T Consensus       296 ~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~  346 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLF  346 (498)
T ss_pred             chhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEecc-cccccc
Confidence            9999999999999987444 56788999999999999999966555 444333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.46  E-value=3.1e-15  Score=124.98  Aligned_cols=152  Identities=29%  Similarity=0.352  Sum_probs=121.0

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcE-EEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLES-LYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      -|+.++++.|++.+.+.      .+..++.+.+ +.+++|.+ +.+|.+    ++.+++|..|+|++|.+. .+|..++.
T Consensus       389 ~Vt~VnfskNqL~elPk------~L~~lkelvT~l~lsnn~i-sfv~~~----l~~l~kLt~L~L~NN~Ln-~LP~e~~~  456 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPK------RLVELKELVTDLVLSNNKI-SFVPLE----LSQLQKLTFLDLSNNLLN-DLPEEMGS  456 (565)
T ss_pred             ceEEEecccchHhhhhh------hhHHHHHHHHHHHhhcCcc-ccchHH----HHhhhcceeeecccchhh-hcchhhhh
Confidence            48888898888764322      2333444433 44555544 445543    889999999999999998 78999999


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +..|+.|+++.|+|. .+|. .+..+..++.+-.++|++....+. .+.++.+|..||+.+|.+. .+ |+.++++++|+
T Consensus       457 lv~Lq~LnlS~NrFr-~lP~-~~y~lq~lEtllas~nqi~~vd~~-~l~nm~nL~tLDL~nNdlq-~I-Pp~LgnmtnL~  531 (565)
T KOG0472|consen  457 LVRLQTLNLSFNRFR-MLPE-CLYELQTLETLLASNNQIGSVDPS-GLKNMRNLTTLDLQNNDLQ-QI-PPILGNMTNLR  531 (565)
T ss_pred             hhhhheecccccccc-cchH-HHhhHHHHHHHHhccccccccChH-HhhhhhhcceeccCCCchh-hC-Chhhcccccee
Confidence            999999999999986 6786 666777788888888999875444 4999999999999999997 56 89999999999


Q ss_pred             EEEecCcccc
Q 024731          234 YLSMGFCTLT  243 (263)
Q Consensus       234 ~L~l~~n~l~  243 (263)
                      +|++++|+|.
T Consensus       532 hLeL~gNpfr  541 (565)
T KOG0472|consen  532 HLELDGNPFR  541 (565)
T ss_pred             EEEecCCccC
Confidence            9999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.41  E-value=1.8e-15  Score=126.43  Aligned_cols=158  Identities=23%  Similarity=0.268  Sum_probs=125.8

Q ss_pred             EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      ..++..+|++...      +..+..+.++..+++.+|.+....|..     -.++.|++||...|-++ .+|..++.+.+
T Consensus       140 ~dl~~~~N~i~sl------p~~~~~~~~l~~l~~~~n~l~~l~~~~-----i~m~~L~~ld~~~N~L~-tlP~~lg~l~~  207 (565)
T KOG0472|consen  140 EDLDATNNQISSL------PEDMVNLSKLSKLDLEGNKLKALPENH-----IAMKRLKHLDCNSNLLE-TLPPELGGLES  207 (565)
T ss_pred             hhhhccccccccC------chHHHHHHHHHHhhccccchhhCCHHH-----HHHHHHHhcccchhhhh-cCChhhcchhh
Confidence            4455566665321      334566777888888888888776653     33888999999999887 88999999999


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEE
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLS  236 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~  236 (263)
                      |+-|++..|.+. .+|  .|.++..|++++++.|.+.. +|.+...+++++.+||+++|+++ +. |+.+..+++|+.||
T Consensus       208 L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklk-e~-Pde~clLrsL~rLD  281 (565)
T KOG0472|consen  208 LELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLK-EV-PDEICLLRSLERLD  281 (565)
T ss_pred             hHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccc-cC-chHHHHhhhhhhhc
Confidence            999999999986 577  68899999999999999887 67775678999999999999998 55 88899999999999


Q ss_pred             ecCcccccccCccchhcH
Q 024731          237 MGFCTLTGALHGQGKLRV  254 (263)
Q Consensus       237 l~~n~l~~~~p~~~l~~L  254 (263)
                      +|+|.+++..++  +.++
T Consensus       282 lSNN~is~Lp~s--Lgnl  297 (565)
T KOG0472|consen  282 LSNNDISSLPYS--LGNL  297 (565)
T ss_pred             ccCCccccCCcc--cccc
Confidence            999999965444  4444

>PLN03150 hypothetical protein; Provisional

Probab=99.41  E-value=8.6e-13  Score=121.30  Aligned_cols=113  Identities=23%  Similarity=0.226  Sum_probs=96.2

Q ss_pred             CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEE
Q 024731          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI  211 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  211 (263)
                      .++.|+|++|.+++.+|..++.+++|+.|+|++|.+.|.+|. .+..+++|+.|+|++|.+++.+|.. ++++++|++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence            377889999999999999999999999999999999988887 7889999999999999999888776 88999999999


Q ss_pred             cCCCCCCcccchhhhhcC-CCCCEEEecCcccccccC
Q 024731          212 LDDSDLHISQLLQSIASF-TSLKYLSMGFCTLTGALH  247 (263)
Q Consensus       212 l~~n~l~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p  247 (263)
                      +++|+++|.+ |..++.. .++..+++.+|......|
T Consensus       497 Ls~N~l~g~i-P~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        497 LNGNSLSGRV-PAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcCCcccccC-ChHHhhccccCceEEecCCccccCCC
Confidence            9999999888 8877753 467788888887554444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.39  E-value=1.7e-13  Score=116.22  Aligned_cols=39  Identities=23%  Similarity=0.138  Sum_probs=17.6

Q ss_pred             CCCcEEEcCCCCCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731          205 TNLEELILDDSDLHISQ---LLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       205 ~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      +.|++|++++|.+++..   +.+.+..+++|+++++++|.++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            44555555555543211   0223334445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.39  E-value=7e-14  Score=118.62  Aligned_cols=164  Identities=24%  Similarity=0.272  Sum_probs=118.5

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCC---cCCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCcc--
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPF---QQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNS--  146 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~--  146 (263)
                      ..+++.++++++.+.....     ..+..+   ++|++|++++|.+++.........+..+ ++|++|++++|.+++.  
T Consensus        80 ~~~L~~L~l~~~~~~~~~~-----~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          80 GCGLQELDLSDNALGPDGC-----GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             cCceeEEEccCCCCChhHH-----HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            4589999999998753221     122333   4599999999998753332222345666 8999999999999843  


Q ss_pred             --ccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCC
Q 024731          147 --IFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDL  217 (263)
Q Consensus       147 --~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l  217 (263)
                        ++..+..+++|++|++++|.+.+.    ++. .+..+++|++|++++|.+.+....   ..+..+++|++|++++|.+
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence              344567778999999999998743    222 455667999999999998754221   1256788999999999999


Q ss_pred             Ccccchhhhh-c----CCCCCEEEecCcccc
Q 024731          218 HISQLLQSIA-S----FTSLKYLSMGFCTLT  243 (263)
Q Consensus       218 ~~~~~~~~l~-~----l~~L~~L~l~~n~l~  243 (263)
                      ++.. ...+. .    .++|+.|++++|.++
T Consensus       234 ~~~~-~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         234 TDAG-AAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             chHH-HHHHHHHHhccCCCceEEEccCCCCC
Confidence            8644 33333 2    379999999999987

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.38  E-value=1.9e-12  Score=119.85  Aligned_cols=133  Identities=22%  Similarity=0.208  Sum_probs=86.3

Q ss_pred             cCCcEEEccCcccCCCCCc--cc---------ccccCCC-CCCCEEEccCCcCCccccccCCC-----------------
Q 024731          103 QQLESLYLIGNNIAGCVEN--EG---------LDTLSRL-NNLKFLYLDYNHFNNSIFSSLGG-----------------  153 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~--~~---------~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~-----------------  153 (263)
                      ++|+.|++++|.+++..+.  ..         ...+..+ .+|++|+|++|++++ +|....+                 
T Consensus       302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l  380 (788)
T PRK15387        302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPAL  380 (788)
T ss_pred             cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCccc
Confidence            5677777777777653220  00         0001111 367888888888773 4432111                 


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      ..+|+.|++++|.+++ +|. .   .++|+.|++++|.++. +|..    ..+|+.|++++|+++ .+ |..+.++++|+
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~-l---~s~L~~LdLS~N~Lss-IP~l----~~~L~~L~Ls~NqLt-~L-P~sl~~L~~L~  448 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPV-L---PSELKELMVSGNRLTS-LPML----PSGLLSLSVYRNQLT-RL-PESLIHLSSET  448 (788)
T ss_pred             ccccceEEecCCcccC-CCC-c---ccCCCEEEccCCcCCC-CCcc----hhhhhhhhhccCccc-cc-ChHHhhccCCC
Confidence            1256666777776653 443 2   2567777888887776 5532    246778888999887 56 88899999999


Q ss_pred             EEEecCcccccccCc
Q 024731          234 YLSMGFCTLTGALHG  248 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~  248 (263)
                      .|++++|++++.+|.
T Consensus       449 ~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        449 TVNLEGNPLSERTLQ  463 (788)
T ss_pred             eEECCCCCCCchHHH
Confidence            999999999988766

>PLN03210 Resistant to P

Probab=99.37  E-value=4.1e-12  Score=124.52  Aligned_cols=160  Identities=19%  Similarity=0.170  Sum_probs=101.4

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .++.|+++++.+...      +..+..+++|+.|+++++...+.+|.     +..+++|++|++++|.....+|..++++
T Consensus       612 ~L~~L~L~~s~l~~L------~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        612 NLVKLQMQGSKLEKL------WDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             CCcEEECcCcccccc------ccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence            455666666655422      12345677888888887765555554     6677888888888876666777777888


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC--------------------Cchhh--------------
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--------------------VIPKE--------------  200 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--------------------~~~~~--------------  200 (263)
                      ++|+.|++++|...+.+|. .+ ++++|++|++++|.....                    +|...              
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~  758 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMK  758 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccc
Confidence            8888888887765555664 33 455555555555432211                    22110              


Q ss_pred             ---------------hcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          201 ---------------LHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       201 ---------------l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                                     ....++|+.|++++|...+.+ |..++++++|+.|++++|..-+.+|.
T Consensus       759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             hhhccccccccchhhhhccccchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCC
Confidence                           001246677777777666566 77888888888888888765456775

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=7.1e-13  Score=101.76  Aligned_cols=129  Identities=34%  Similarity=0.453  Sum_probs=49.8

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccC-CCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc-
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL-  176 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-  176 (263)
                      +.+..++++|+|++|.|+.. ..     +. .+.+|+.|++++|.++. + +.+..+++|++|++++|+++. ++. .+ 
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I-e~-----L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~-~l~   84 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI-EN-----LGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISE-GLD   84 (175)
T ss_dssp             ----------------------S-------TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CH-HHH
T ss_pred             cccccccccccccccccccc-cc-----hhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-ccc-chH
Confidence            34445678889999888753 22     44 57788999999999884 3 357778889999999998874 543 33 


Q ss_pred             CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccc--hhhhhcCCCCCEEEe
Q 024731          177 DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL--LQSIASFTSLKYLSM  237 (263)
Q Consensus       177 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~l~~L~~L~l  237 (263)
                      ..+++|++|++++|++.....-..+..+++|++|++.+|++....-  ...+..+|+|+.||-
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            3578899999999988764322337788899999999998864320  234678888888874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=1.6e-12  Score=99.77  Aligned_cols=112  Identities=29%  Similarity=0.403  Sum_probs=45.9

Q ss_pred             cCCCCCCCEEEccCCcCCccccccCC-CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC
Q 024731          127 LSRLNNLKFLYLDYNHFNNSIFSSLG-GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT  205 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  205 (263)
                      +.+..++++|+|.+|.|+. + +.++ .+.+|+.|++++|.+. .++  .+..++.|++|++++|.++. +.......++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence            5566789999999999983 3 3565 5889999999999988 454  68889999999999999998 4443124689


Q ss_pred             CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccccc
Q 024731          206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  244 (263)
                      +|++|++++|++........+..+++|+.|++.+|+++.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            999999999999764324678899999999999999984

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.29  E-value=1.4e-11  Score=114.54  Aligned_cols=145  Identities=19%  Similarity=0.208  Sum_probs=79.7

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .++.|++++|.+.....     . +  ...|+.|++++|.+.. +|..    +  ..+|++|++++|+++ .+|..+.  
T Consensus       221 nL~~L~Ls~N~LtsLP~-----~-l--~~~L~~L~Ls~N~L~~-LP~~----l--~s~L~~L~Ls~N~L~-~LP~~l~--  282 (754)
T PRK15370        221 NIKTLYANSNQLTSIPA-----T-L--PDTIQEMELSINRITE-LPER----L--PSALQSLDLFHNKIS-CLPENLP--  282 (754)
T ss_pred             CCCEEECCCCccccCCh-----h-h--hccccEEECcCCccCc-CChh----H--hCCCCEEECcCCccC-ccccccC--
Confidence            56778888877653211     1 1  1246666666666553 2221    1  134555555555555 3444332  


Q ss_pred             CCCCEEEcCCCcCCCCcCcccc-------------------CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCC
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGL-------------------DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS  215 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~-------------------~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  215 (263)
                      ++|++|++++|++++ +|. .+                   .-.++|++|++++|.++. +|.. +  .++|+.|++++|
T Consensus       283 ~sL~~L~Ls~N~Lt~-LP~-~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N  356 (754)
T PRK15370        283 EELRYLSVYDNSIRT-LPA-HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPAS-L--PPELQVLDVSKN  356 (754)
T ss_pred             CCCcEEECCCCcccc-Ccc-cchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChh-h--cCcccEEECCCC
Confidence            345555555555442 221 11                   012456777777777665 4443 3  257888888888


Q ss_pred             CCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          216 DLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       216 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +++ .+ |..+.  ++|++|++++|+++ .+|.
T Consensus       357 ~L~-~L-P~~lp--~~L~~LdLs~N~Lt-~LP~  384 (754)
T PRK15370        357 QIT-VL-PETLP--PTITTLDVSRNALT-NLPE  384 (754)
T ss_pred             CCC-cC-Chhhc--CCcCEEECCCCcCC-CCCH
Confidence            876 34 55442  57888888888887 4565

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=4.2e-14  Score=122.84  Aligned_cols=133  Identities=21%  Similarity=0.278  Sum_probs=96.5

Q ss_pred             cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (263)
                      .+..+..|+++|++.|+++-..+.     ++.++ |+.|-+++|+++ .+|..++..+.|..||.+.|.+. .+|. .++
T Consensus       116 ~i~~L~~lt~l~ls~NqlS~lp~~-----lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps-ql~  186 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLSHLPDG-----LCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS-QLG  186 (722)
T ss_pred             hhhhhhHHHHhhhccchhhcCChh-----hhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH-Hhh
Confidence            355666777777777777654443     34443 777777777777 67777777777778888888766 4665 777


Q ss_pred             CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccccc
Q 024731          178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  244 (263)
                      .+.+|+.|++..|.+.. +|++ +..+ .|..||++.|+++ .+ |..|.+|+.|++|-|.+|.++.
T Consensus       187 ~l~slr~l~vrRn~l~~-lp~E-l~~L-pLi~lDfScNkis-~i-Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLED-LPEE-LCSL-PLIRLDFSCNKIS-YL-PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hHHHHHHHHHhhhhhhh-CCHH-HhCC-ceeeeecccCcee-ec-chhhhhhhhheeeeeccCCCCC
Confidence            77788888888887777 5665 6544 4778888888887 56 7888888888888888888874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=8e-13  Score=111.68  Aligned_cols=178  Identities=20%  Similarity=0.226  Sum_probs=121.0

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc-cccccCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG  152 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~  152 (263)
                      ..|+.+||+.|-+..   |.........+++|+.|+++.|.+.-......   -..+++|+.|.|+.|.++. .+...+.
T Consensus       146 ~~v~~LdLS~NL~~n---w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHN---WFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             CcceeecchhhhHHh---HHHHHHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            468888888886643   33334556788899999999998865443321   2357788888999988873 2233445


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhh-----hh
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQS-----IA  227 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----l~  227 (263)
                      .+|+|+.|+++.|....... .....+..|+.|||++|++....-....+.++.|+.|.++.+.+.....|+.     ..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            77889999998885322211 1345567899999999998764211237888999999999998865443443     45


Q ss_pred             cCCCCCEEEecCcccccccCc-cchhcHHHHHH
Q 024731          228 SFTSLKYLSMGFCTLTGALHG-QGKLRVSEAFM  259 (263)
Q Consensus       228 ~l~~L~~L~l~~n~l~~~~p~-~~l~~L~~L~~  259 (263)
                      .+++|++|+++.|++. ..++ ..+..+.+|..
T Consensus       299 ~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~  330 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIR-DWRSLNHLRTLENLKH  330 (505)
T ss_pred             ccccceeeecccCccc-cccccchhhccchhhh
Confidence            6889999999999997 4565 33444444333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.26  E-value=3e-10  Score=105.75  Aligned_cols=41  Identities=10%  Similarity=0.015  Sum_probs=27.9

Q ss_pred             ccCCCcHHHHHHHHHHhhhCCCCCC---CCCCCcCCCCCCCCCCCCc
Q 024731           23 WSEGCLEQERYALLQLRHFFNDDQC---LQNCWVDDENYSDCCQWER   66 (263)
Q Consensus        23 ~~~~~~~~~~~aL~~~~~~~~~~~~---~~~~W~~~~~~~~~c~w~g   66 (263)
                      ..+...+.|...++.+...+.-|+.   ....|.   ...++|.-..
T Consensus        56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~---~~~~fc~~~~   99 (754)
T PRK15370         56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRG---GADQYCILSE   99 (754)
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCchhhccccccC---CCCcccccCC
Confidence            4567788999999999998883321   233487   4667886543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.24  E-value=5.2e-13  Score=108.19  Aligned_cols=134  Identities=27%  Similarity=0.322  Sum_probs=107.8

Q ss_pred             CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN  181 (263)
Q Consensus       102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  181 (263)
                      ...|+++|+++|.|+.....     ..-.|.++.|++|+|.+. .+ ..+..+++|+.|||++|.++.. .. .-..+.+
T Consensus       283 Wq~LtelDLS~N~I~~iDES-----vKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~-~G-wh~KLGN  353 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDES-----VKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC-VG-WHLKLGN  353 (490)
T ss_pred             Hhhhhhccccccchhhhhhh-----hhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhh-hh-hHhhhcC
Confidence            45789999999999754433     677899999999999997 33 3478899999999999998743 22 4457889


Q ss_pred             CCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          182 LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++.|.|+.|.+...  .+ ++++-+|..||+++|+|........++++|.|+++.+.+|++.+ +|+
T Consensus       354 IKtL~La~N~iE~L--SG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vd  416 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVD  416 (490)
T ss_pred             EeeeehhhhhHhhh--hh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cch
Confidence            99999999998763  44 88899999999999999754334678999999999999999984 554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.23  E-value=5e-13  Score=121.90  Aligned_cols=146  Identities=26%  Similarity=0.333  Sum_probs=106.4

Q ss_pred             CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN  181 (263)
Q Consensus       102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  181 (263)
                      ++.|+.|++.+|.++...-+    .+.++++|+.|+|++|.+.......+.+++.|+.|+|++|.++ .+|. .+..++.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~  431 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGR  431 (1081)
T ss_pred             hHHHHHHHHhcCcccccchh----hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhh
Confidence            45677778888888754433    2788888999999999887433346778888899999999887 6776 8888888


Q ss_pred             CCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          182 LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      |++|...+|.+.. .| . +.+++.|+.+|++.|.++...++.... .++|++||+++|.-. ..-...|+.++++.
T Consensus       432 L~tL~ahsN~l~~-fP-e-~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~  503 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLS-FP-E-LAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRL-VFDHKTLKVLKSLS  503 (1081)
T ss_pred             hHHHhhcCCceee-ch-h-hhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCccc-ccchhhhHHhhhhh
Confidence            9998888888876 55 4 888999999999999987554343332 378999999999732 22223455444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.22  E-value=4.9e-13  Score=122.01  Aligned_cols=141  Identities=28%  Similarity=0.338  Sum_probs=113.4

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccc---------------------cccCCCCCCCEEEccCCcCCccccccCCCCCCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGL---------------------DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~---------------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  157 (263)
                      ..+++.|++|+|..|.+...++....                     ..=..++.|+.|++.+|.+++..-..+.++.+|
T Consensus       306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL  385 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL  385 (1081)
T ss_pred             ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence            44566777777777766543321100                     001235678899999999998887888999999


Q ss_pred             CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM  237 (263)
Q Consensus       158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  237 (263)
                      ++|+|++|++. .+|+..+.++..|++|+|++|+++. +|.. +.+++.|++|....|++. .. | .+.++++|+.+|+
T Consensus       386 KVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~-Lp~t-va~~~~L~tL~ahsN~l~-~f-P-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  386 KVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT-LPDT-VANLGRLHTLRAHSNQLL-SF-P-ELAQLPQLKVLDL  459 (1081)
T ss_pred             eeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh-hhHH-HHhhhhhHHHhhcCCcee-ec-h-hhhhcCcceEEec
Confidence            99999999986 6888789999999999999999998 7765 999999999999999997 34 6 8999999999999


Q ss_pred             cCcccccc
Q 024731          238 GFCTLTGA  245 (263)
Q Consensus       238 ~~n~l~~~  245 (263)
                      +.|+++..
T Consensus       460 S~N~L~~~  467 (1081)
T KOG0618|consen  460 SCNNLSEV  467 (1081)
T ss_pred             ccchhhhh
Confidence            99998743

>PLN03210 Resistant to P

Probab=99.22  E-value=1.3e-10  Score=114.09  Aligned_cols=141  Identities=18%  Similarity=0.175  Sum_probs=99.9

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  180 (263)
                      ...+|+.|++++|.+......     +..+++|++|+|+++.....+| .++.+++|++|++++|.....+|. .+..++
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~  681 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLN  681 (1153)
T ss_pred             CccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccC
Confidence            356788888888877654332     5678888888888776544666 377788888888888876667776 788888


Q ss_pred             CCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc-cchhcHH
Q 024731          181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVS  255 (263)
Q Consensus       181 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~l~~L~  255 (263)
                      +|+.|++++|.....+|.. + ++++|+.|++++|...... |..   .++|++|++++|.+. .+|. ..+.+|+
T Consensus       682 ~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~-p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~  750 (1153)
T PLN03210        682 KLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSF-PDI---STNISWLDLDETAIE-EFPSNLRLENLD  750 (1153)
T ss_pred             CCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcccc-ccc---cCCcCeeecCCCccc-cccccccccccc
Confidence            8888888887655546654 3 6788888888888655444 432   457888888888886 5665 2344444

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.19  E-value=7.9e-11  Score=109.27  Aligned_cols=94  Identities=24%  Similarity=0.255  Sum_probs=49.5

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      +++.|++++|.++..+.         ..++|++|++++|+++.. |.     +  .++|++|++++|.++ .+|...   
T Consensus       223 ~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~LtsL-P~-----l--p~sL~~L~Ls~N~L~-~Lp~lp---  281 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSL-PV-----L--PPGLLELSIFSNPLT-HLPALP---  281 (788)
T ss_pred             CCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCcc-cC-----c--ccccceeeccCCchh-hhhhch---
Confidence            46667777776643221         236777777777777654 22     1  245556666666555 233211   


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN  194 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  194 (263)
                      .+|+.|++++|+++ .+|.    ..++|++|++++|++++
T Consensus       282 ~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        282 SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             hhcCEEECcCCccc-cccc----cccccceeECCCCcccc
Confidence            34445555555544 2332    12455555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=9.2e-13  Score=114.67  Aligned_cols=165  Identities=25%  Similarity=0.301  Sum_probs=136.3

Q ss_pred             EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCC
Q 024731           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (263)
Q Consensus        76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  155 (263)
                      .+..|++.|++.+.      +..+..|..|+.+.+..|.+....+.     ++++..|+++||+.|+++ .+|..++.++
T Consensus        77 t~~aDlsrNR~~el------p~~~~~f~~Le~liLy~n~~r~ip~~-----i~~L~~lt~l~ls~NqlS-~lp~~lC~lp  144 (722)
T KOG0532|consen   77 TVFADLSRNRFSEL------PEEACAFVSLESLILYHNCIRTIPEA-----ICNLEALTFLDLSSNQLS-HLPDGLCDLP  144 (722)
T ss_pred             hhhhhccccccccC------chHHHHHHHHHHHHHHhccceecchh-----hhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence            34567777776432      33456677888999999988755443     789999999999999998 7888888776


Q ss_pred             CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEE
Q 024731          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL  235 (263)
Q Consensus       156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  235 (263)
                       |+.|.+++|+++ .+|. .++....|..||.+.|.+.. +|.. ++.+.+|+.|.+..|++. .. |+.+..++ |..|
T Consensus       145 -Lkvli~sNNkl~-~lp~-~ig~~~tl~~ld~s~nei~s-lpsq-l~~l~slr~l~vrRn~l~-~l-p~El~~Lp-Li~l  216 (722)
T KOG0532|consen  145 -LKVLIVSNNKLT-SLPE-EIGLLPTLAHLDVSKNEIQS-LPSQ-LGYLTSLRDLNVRRNHLE-DL-PEELCSLP-LIRL  216 (722)
T ss_pred             -ceeEEEecCccc-cCCc-ccccchhHHHhhhhhhhhhh-chHH-hhhHHHHHHHHHhhhhhh-hC-CHHHhCCc-eeee
Confidence             899999999987 6787 88888999999999999988 6665 999999999999999987 34 78888664 8999


Q ss_pred             EecCcccccccCccchhcHHHHHHHhc
Q 024731          236 SMGFCTLTGALHGQGKLRVSEAFMILI  262 (263)
Q Consensus       236 ~l~~n~l~~~~p~~~l~~L~~L~~~~~  262 (263)
                      |++.|+++ .||. .|.++++|+.+.+
T Consensus       217 DfScNkis-~iPv-~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  217 DFSCNKIS-YLPV-DFRKMRHLQVLQL  241 (722)
T ss_pred             ecccCcee-ecch-hhhhhhhheeeee
Confidence            99999998 7898 8999999988754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.17  E-value=3.5e-12  Score=106.67  Aligned_cols=84  Identities=25%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCC-CcCCCCcCccccCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG-NRLIGSIDIKGLDSLGNL  182 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L  182 (263)
                      ....++|..|+|+..++..    |+.+++|+.||||+|+|+.+-|..|.++.+|..|.+.+ |+++ .+|...|.++.++
T Consensus        68 ~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            5678999999999877754    99999999999999999988899999999998888776 7765 5666566655555


Q ss_pred             CEEEcCCCCC
Q 024731          183 EELDMSDNAI  192 (263)
Q Consensus       183 ~~L~L~~n~l  192 (263)
                      +.|.+.-|.+
T Consensus       143 qrLllNan~i  152 (498)
T KOG4237|consen  143 QRLLLNANHI  152 (498)
T ss_pred             HHHhcChhhh
Confidence            5555444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=5.7e-12  Score=102.26  Aligned_cols=131  Identities=27%  Similarity=0.277  Sum_probs=105.3

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.+|+++|.+....      ....-.+.++.|++++|.+.....      +..+++|++||||+|.++ .+..+-.+
T Consensus       284 q~LtelDLS~N~I~~iD------ESvKL~Pkir~L~lS~N~i~~v~n------La~L~~L~~LDLS~N~Ls-~~~Gwh~K  350 (490)
T KOG1259|consen  284 QELTELDLSGNLITQID------ESVKLAPKLRRLILSQNRIRTVQN------LAELPQLQLLDLSGNLLA-ECVGWHLK  350 (490)
T ss_pred             hhhhhccccccchhhhh------hhhhhccceeEEeccccceeeehh------hhhcccceEeecccchhH-hhhhhHhh
Confidence            45789999999886432      234567899999999999975432      788999999999999998 44444457


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS  220 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  220 (263)
                      +.+.+.|.|++|.+.. +.  .+..+-+|.+||+++|+|........++++|.|+++.+.+|.+.+.
T Consensus       351 LGNIKtL~La~N~iE~-LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  351 LGNIKTLKLAQNKIET-LS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hcCEeeeehhhhhHhh-hh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            8889999999999863 33  7788999999999999997643333489999999999999999754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=1.8e-10  Score=73.09  Aligned_cols=61  Identities=31%  Similarity=0.540  Sum_probs=37.7

Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccc
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL  242 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  242 (263)
                      ++|++|++++|+++. +++..|..+++|++|++++|.++... +..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCcC
Confidence            356666666666665 44444666666666666666666433 55666666666666666654

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=2e-10  Score=100.59  Aligned_cols=155  Identities=30%  Similarity=0.419  Sum_probs=95.8

Q ss_pred             cEEEEecCCCCCccccccccccccccCCc-CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .++.+++.++.+.....      ....+. +|+.|++++|.+......     +..+++|+.|++++|+++ .+|...+.
T Consensus       117 ~l~~L~l~~n~i~~i~~------~~~~~~~nL~~L~l~~N~i~~l~~~-----~~~l~~L~~L~l~~N~l~-~l~~~~~~  184 (394)
T COG4886         117 NLTSLDLDNNNITDIPP------LIGLLKSNLKELDLSDNKIESLPSP-----LRNLPNLKNLDLSFNDLS-DLPKLLSN  184 (394)
T ss_pred             ceeEEecCCcccccCcc------ccccchhhcccccccccchhhhhhh-----hhccccccccccCCchhh-hhhhhhhh
Confidence            46778888877754322      233443 777777777777654322     566777777777777776 45554446


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCC-----------------------CCCCCCchhhhcCCCCCcEE
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN-----------------------AINNLVIPKELHNFTNLEEL  210 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n-----------------------~l~~~~~~~~l~~l~~L~~L  210 (263)
                      .+.|+.|++++|.+. .+|. .......|+++.+++|                       ++.. .+. .++.++.++.|
T Consensus       185 ~~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~-~~~~l~~l~~L  260 (394)
T COG4886         185 LSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPE-SIGNLSNLETL  260 (394)
T ss_pred             hhhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccc-hhcccccccee
Confidence            667777777777765 3443 2223334555555555                       3332 122 25666777888


Q ss_pred             EcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       211 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++++|.++..  +. ++.+.+++.|++++|.+...+|.
T Consensus       261 ~~s~n~i~~i--~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         261 DLSNNQISSI--SS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccccccc--cc-ccccCccCEEeccCccccccchh
Confidence            8888877632  22 77778888888888887765554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.01  E-value=3.2e-10  Score=71.98  Aligned_cols=58  Identities=34%  Similarity=0.424  Sum_probs=23.6

Q ss_pred             CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCC
Q 024731          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN  190 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n  190 (263)
                      +|++|++++|+++...+..|.++++|++|++++|.+.. ++...|..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCC
Confidence            34444444444443222344444444444444444432 22223444444444444444

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=2.1e-10  Score=100.34  Aligned_cols=123  Identities=37%  Similarity=0.409  Sum_probs=93.1

Q ss_pred             EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCC-CCCEEEccCCcCCccccccCCCCCC
Q 024731           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN-NLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      .+++..+.+.      .+...+..++.++.|++.+|.++...+.     ..... +|+.|++++|.+. .+|..++.++.
T Consensus        97 ~l~~~~~~~~------~~~~~~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~  164 (394)
T COG4886          97 SLDLNLNRLR------SNISELLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIE-SLPSPLRNLPN  164 (394)
T ss_pred             eeeccccccc------cCchhhhcccceeEEecCCcccccCccc-----cccchhhcccccccccchh-hhhhhhhcccc
Confidence            3666666542      1122345668899999999999877664     44553 8999999999998 66678899999


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCC
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD  216 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  216 (263)
                      |+.|++++|++. .+|. .....++|+.|++++|++.. +|.. ......|+.+.+++|.
T Consensus       165 L~~L~l~~N~l~-~l~~-~~~~~~~L~~L~ls~N~i~~-l~~~-~~~~~~L~~l~~~~N~  220 (394)
T COG4886         165 LKNLDLSFNDLS-DLPK-LLSNLSNLNNLDLSGNKISD-LPPE-IELLSALEELDLSNNS  220 (394)
T ss_pred             ccccccCCchhh-hhhh-hhhhhhhhhheeccCCcccc-Cchh-hhhhhhhhhhhhcCCc
Confidence            999999999988 5664 45588999999999999988 5553 3444557777777763

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.88  E-value=3.4e-09  Score=61.96  Aligned_cols=40  Identities=35%  Similarity=0.723  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhhhCC-CCCCCCCCCcCCCC-CCCCCCCCceEEc
Q 024731           29 EQERYALLQLRHFFN-DDQCLQNCWVDDEN-YSDCCQWERVECN   70 (263)
Q Consensus        29 ~~~~~aL~~~~~~~~-~~~~~~~~W~~~~~-~~~~c~w~gv~c~   70 (263)
                      ++|++||++||+++. ++...+.+|+  .. ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence            689999999999999 5667899999  22 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.86  E-value=9.6e-10  Score=90.86  Aligned_cols=41  Identities=24%  Similarity=0.187  Sum_probs=17.7

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcC
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF  143 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l  143 (263)
                      ++|++|+||+|-+....+......+..+..|++|.|.+|.+
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            34555555555444333322222334444444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=6.9e-10  Score=94.17  Aligned_cols=165  Identities=22%  Similarity=0.252  Sum_probs=118.8

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      -.+++.|+++.|++.-..    ....-..+++|+.|.++.|+++.   ......+..+|+|+.|+|++|..-..-.....
T Consensus       171 Lp~Le~LNls~Nrl~~~~----~s~~~~~l~~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~  243 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFI----SSNTTLLLSHLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEIILIKATSTK  243 (505)
T ss_pred             cccchhcccccccccCCc----cccchhhhhhhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccccceecchhh
Confidence            467899999999885211    12223467899999999999972   22223467899999999999963222222344


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchh-----hhcCCCCCcEEEcCCCCCCcccchhhhh
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPK-----ELHNFTNLEELILDDSDLHISQLLQSIA  227 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~~l~  227 (263)
                      -+..|+.|||++|++...-.....+.++.|+.|+++.+.+...-.+.     ....+++|++|++..|++...-....+.
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~  323 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR  323 (505)
T ss_pred             hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence            57789999999999874321126778999999999999887642222     1356789999999999996543345677


Q ss_pred             cCCCCCEEEecCccccc
Q 024731          228 SFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       228 ~l~~L~~L~l~~n~l~~  244 (263)
                      .+++|+.|.+..|.++.
T Consensus       324 ~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  324 TLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccchhhhhhcccccccc
Confidence            78888999988998874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.78  E-value=1.7e-09  Score=89.50  Aligned_cols=167  Identities=22%  Similarity=0.220  Sum_probs=83.5

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccC-------------------------------------
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIA-------------------------------------  116 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------------------  116 (263)
                      ++++.+|||+|.++..|...+ ...+.+...|+.|.|.+|.+.                                     
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l-~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGL-EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CceeEeeccccccCccchHHH-HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            378888888888754332111 123444556666666666553                                     


Q ss_pred             CCCCcccccccCCCCCCCEEEccCCcCCc----cccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcC
Q 024731          117 GCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMS  188 (263)
Q Consensus       117 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~  188 (263)
                      ..........|...+.|+.+.++.|.|..    .+...+..+++|++|||.+|.|+..    +. ..++.+++|+.|+++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNLG  249 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-HHhcccchheeeccc
Confidence            22222222333444455555555554431    1122344556666666666655421    11 144455566666666


Q ss_pred             CCCCCCCCchhh---h-cCCCCCcEEEcCCCCCCccc---chhhhhcCCCCCEEEecCccc
Q 024731          189 DNAINNLVIPKE---L-HNFTNLEELILDDSDLHISQ---LLQSIASFTSLKYLSMGFCTL  242 (263)
Q Consensus       189 ~n~l~~~~~~~~---l-~~l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l  242 (263)
                      +|.+........   + ...++|+.|.+.+|.++...   +...+...+.|..|+|++|.+
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            666554322210   1 22456666666666664321   122344556666666666666

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.73  E-value=9.7e-11  Score=104.96  Aligned_cols=128  Identities=26%  Similarity=0.243  Sum_probs=90.8

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  183 (263)
                      .|...+.+.|.+.-...     ++.-++.|+.|||++|+++..  ..+..+++|++|||++|.+. .+|...-..+. |.
T Consensus       165 ~L~~a~fsyN~L~~mD~-----SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDE-----SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQ  235 (1096)
T ss_pred             hHhhhhcchhhHHhHHH-----HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-he
Confidence            45556666666653322     366678888888888888742  37778888888888888876 45542333343 88


Q ss_pred             EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731          184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      .|++++|.++..  .+ +.++++|+.||+++|-+.+.--...+..+..|+.|+|.+|++-
T Consensus       236 ~L~lrnN~l~tL--~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  236 LLNLRNNALTTL--RG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeecccHHHhh--hh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888888888764  33 7788888888888888865432345667778888888888875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=1e-08  Score=90.32  Aligned_cols=109  Identities=35%  Similarity=0.479  Sum_probs=48.3

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      +..+++++.|++.+|.+.+....     +..+++|++|++++|.|+..  ..+..++.|+.|++++|.+.. +.  .+..
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~~  160 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLES  160 (414)
T ss_pred             cccccceeeeeccccchhhcccc-----hhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCcc
Confidence            34444555555555555433221     33445555555555555432  123334445555555555442 22  3333


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCC
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH  218 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  218 (263)
                      ++.|+.+++++|.+...-+.. ...+.+++.+++.+|.+.
T Consensus       161 l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            455555555555554421101 234445555555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.57  E-value=1.5e-08  Score=89.37  Aligned_cols=128  Identities=29%  Similarity=0.359  Sum_probs=60.9

Q ss_pred             CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN  181 (263)
Q Consensus       102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  181 (263)
                      +..++.+.+..|.+.....     .+..+.+|+.|++.+|++.. +...+..+++|++|++++|.++.. .  .+..++.
T Consensus        71 l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-~--~l~~l~~  141 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-E--GLSTLTL  141 (414)
T ss_pred             hHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc-c--chhhccc
Confidence            3444444455555543111     14445555555555555552 222244555555555555555432 2  3344444


Q ss_pred             CCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccch-hhhhcCCCCCEEEecCcccc
Q 024731          182 LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL-QSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~l~  243 (263)
                      |+.|++++|.++..  .. +..++.|+.+++++|++.... + . ...+.+++.+++.+|.+.
T Consensus       142 L~~L~l~~N~i~~~--~~-~~~l~~L~~l~l~~n~i~~ie-~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  142 LKELNLSGNLISDI--SG-LESLKSLKLLDLSYNRIVDIE-NDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hhhheeccCcchhc--cC-CccchhhhcccCCcchhhhhh-hhh-hhhccchHHHhccCCchh
Confidence            55555555555542  11 444555555555555554221 1 1 344555555555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=5.3e-08  Score=92.37  Aligned_cols=128  Identities=26%  Similarity=0.299  Sum_probs=82.1

Q ss_pred             cCCcEEEccCcc--cCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731          103 QQLESLYLIGNN--IAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (263)
Q Consensus       103 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  180 (263)
                      ++|++|-+..|.  +.. ++.   ..|..++.|++|||++|.-.+.+|..++++-+|++|++++..+. .+|. .+.++.
T Consensus       545 ~~L~tLll~~n~~~l~~-is~---~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk  618 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLE-ISG---EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLK  618 (889)
T ss_pred             CccceEEEeecchhhhh-cCH---HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHH
Confidence            367777777775  222 222   23677888888888877666677888888888888888888766 5776 778888


Q ss_pred             CCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc-cchhhhhcCCCCCEEEe
Q 024731          181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS-QLLQSIASFTSLKYLSM  237 (263)
Q Consensus       181 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~l~~L~~L~l  237 (263)
                      .|.+|++..+.....++.. ...+.+|++|.+........ .....+..+..|+.+..
T Consensus       619 ~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            8888888877655544332 55577888887766542211 11234444555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=4.2e-09  Score=94.74  Aligned_cols=106  Identities=28%  Similarity=0.359  Sum_probs=85.7

Q ss_pred             CCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEE
Q 024731          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL  210 (263)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  210 (263)
                      -.|...+.++|.+. ....++.-++.|+.|+|++|+++.. .  .+..++.|++|||++|.+.. +|.-....+ +|+.|
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L  237 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLL  237 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H--HHHhcccccccccccchhcc-ccccchhhh-hheee
Confidence            36778888899887 5666777889999999999998743 2  67889999999999999987 554323333 49999


Q ss_pred             EcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731          211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  245 (263)
Q Consensus       211 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  245 (263)
                      .+++|.++.   .-.+.++++|+.||+++|-+.+.
T Consensus       238 ~lrnN~l~t---L~gie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  238 NLRNNALTT---LRGIENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             eecccHHHh---hhhHHhhhhhhccchhHhhhhcc
Confidence            999999873   35688999999999999998753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=3.6e-08  Score=80.29  Aligned_cols=166  Identities=20%  Similarity=0.217  Sum_probs=110.6

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc-cccccCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG  152 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~  152 (263)
                      .+|.++||.+|.+..   |.-....+.+++.|+.|+++.|++...+...    -....+|++|-|.+..+.- .....+.
T Consensus        71 ~~v~elDL~~N~iSd---WseI~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   71 TDVKELDLTGNLISD---WSEIGAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             hhhhhhhcccchhcc---HHHHHHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence            468888999888743   3333556788999999999999887665542    1356688888888777652 2233455


Q ss_pred             CCCCCCEEEcCCCcCCCC---------cC-c------------------cccCCCCCCCEEEcCCCCCCCCCchhhhcCC
Q 024731          153 GLSSLRNLSLIGNRLIGS---------ID-I------------------KGLDSLGNLEELDMSDNAINNLVIPKELHNF  204 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~---------~p-~------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l  204 (263)
                      .+|.++.|.++.|.+...         +. .                  ..-..++++..+-+..|.+...........+
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            677777777777733100         00 0                  0001256666777777766554333335567


Q ss_pred             CCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccccccc
Q 024731          205 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL  246 (263)
Q Consensus       205 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  246 (263)
                      +.+..|.|+.|++......+++.++++|..|.+++|++..++
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            778888899998876543577888999999999999887554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.45  E-value=1.8e-07  Score=88.88  Aligned_cols=104  Identities=26%  Similarity=0.260  Sum_probs=48.1

Q ss_pred             CCCEEEccCCc--CCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcE
Q 024731          132 NLKFLYLDYNH--FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE  209 (263)
Q Consensus       132 ~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  209 (263)
                      +|+.|-+..|.  +.......|..++.|++||+++|.-.+.+|. .++.+-+|++|++++..+.. +|.. ++++++|.+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~-LP~~-l~~Lk~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISH-LPSG-LGNLKKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccc-cchH-HHHHHhhhe
Confidence            45555554443  2212222344455555555555444444454 45555555555555555543 4444 555555555


Q ss_pred             EEcCCCCCCcccchhhhhcCCCCCEEEecC
Q 024731          210 LILDDSDLHISQLLQSIASFTSLKYLSMGF  239 (263)
Q Consensus       210 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~  239 (263)
                      |++..+.....+ +.....+.+|++|.+..
T Consensus       623 Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  623 LNLEVTGRLESI-PGILLELQSLRVLRLPR  651 (889)
T ss_pred             eccccccccccc-cchhhhcccccEEEeec
Confidence            555544433222 33344455555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=1.8e-08  Score=72.99  Aligned_cols=108  Identities=18%  Similarity=0.171  Sum_probs=67.4

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC-CCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  182 (263)
                      .+..++|+.+.+--. +.. ...+.....|+..+|++|.+. ..|+.| ..++.++.+++++|.++ .+|. .+..++.|
T Consensus        28 E~h~ldLssc~lm~i-~da-vy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPe-E~Aam~aL  102 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYI-ADA-VYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPE-ELAAMPAL  102 (177)
T ss_pred             HhhhcccccchhhHH-HHH-HHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchH-HHhhhHHh
Confidence            455667777765321 111 011445566677777777777 344444 34557777777777766 5676 57777777


Q ss_pred             CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCC
Q 024731          183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH  218 (263)
Q Consensus       183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  218 (263)
                      +.|+++.|.+.. .|.. +..+.++..|+..+|.+.
T Consensus       103 r~lNl~~N~l~~-~p~v-i~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  103 RSLNLRFNPLNA-EPRV-IAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhcccccCcccc-chHH-HHHHHhHHHhcCCCCccc
Confidence            777777777766 3443 555777777777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.40  E-value=1.6e-07  Score=75.65  Aligned_cols=144  Identities=23%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcc----cc---------ccCCCCCCCCEEEcCCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IF---------SSLGGLSSLRNLSLIGN  165 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p---------~~l~~l~~L~~L~L~~n  165 (263)
                      +.++++|+.++||.|.+....|+...+.++.-..|.+|.+++|.+...    +.         ....+-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            456777888888888777666665556667777788888877776511    11         11234466777777777


Q ss_pred             cCCCCcCc----cccCCCCCCCEEEcCCCCCCCCCchh----hhcCCCCCcEEEcCCCCCCccc---chhhhhcCCCCCE
Q 024731          166 RLIGSIDI----KGLDSLGNLEELDMSDNAINNLVIPK----ELHNFTNLEELILDDSDLHISQ---LLQSIASFTSLKY  234 (263)
Q Consensus       166 ~l~~~~p~----~~~~~l~~L~~L~L~~n~l~~~~~~~----~l~~l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~  234 (263)
                      ++.. .+.    ..+..-.+|+.+.+..|.|.......    .+..+.+|+.||+.+|-++...   +...+..++.|+.
T Consensus       168 Rlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         168 RLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             hhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            7642 121    12233346666667666664321110    1334566777777777665321   1233445555666


Q ss_pred             EEecCcccc
Q 024731          235 LSMGFCTLT  243 (263)
Q Consensus       235 L~l~~n~l~  243 (263)
                      |.+.+|-++
T Consensus       247 L~lnDClls  255 (388)
T COG5238         247 LRLNDCLLS  255 (388)
T ss_pred             ccccchhhc
Confidence            666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.38  E-value=7.4e-07  Score=68.80  Aligned_cols=109  Identities=22%  Similarity=0.207  Sum_probs=78.2

Q ss_pred             CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN  181 (263)
Q Consensus       102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  181 (263)
                      ..+...+||++|.+....-      |..+++|++|.+++|.|+..-|.--..+++|+.|.+.+|++...-....+..++.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            3456778899888864322      7888899999999999986555544556789999999998753222235678889


Q ss_pred             CCEEEcCCCCCCCCCc--hhhhcCCCCCcEEEcCCCC
Q 024731          182 LEELDMSDNAINNLVI--PKELHNFTNLEELILDDSD  216 (263)
Q Consensus       182 L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~l~~n~  216 (263)
                      |++|.+-+|.++..--  .-.+..+++|+.||+..=.
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9999998888765311  1135678899999987643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.36  E-value=1.1e-08  Score=74.07  Aligned_cols=114  Identities=19%  Similarity=0.145  Sum_probs=75.9

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      +....+|+..++++|.+...++..    -..++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|. .+..
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kf----t~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~  121 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKF----TIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAP  121 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHH----hhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHH
Confidence            445566777788888887655542    345667888888888888 67777888888888888888876 4555 5666


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ  221 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  221 (263)
                      +.++..|+..+|.+.. ++.. +-.-+..-..++.++.+.+..
T Consensus       122 L~~l~~Lds~~na~~e-id~d-l~~s~~~al~~lgnepl~~~~  162 (177)
T KOG4579|consen  122 LIKLDMLDSPENARAE-IDVD-LFYSSLPALIKLGNEPLGDET  162 (177)
T ss_pred             HHhHHHhcCCCCcccc-CcHH-HhccccHHHHHhcCCcccccC
Confidence            8888888888887765 4443 221122222334555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.29  E-value=1.3e-06  Score=51.14  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             CCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731          205 TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       205 ~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      ++|++|++++|+++ .+ +..++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-cc-CchHhCCCCCCEEEecCCCCC
Confidence            35666666666666 33 445666666666666666666

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.26  E-value=4.4e-07  Score=84.15  Aligned_cols=141  Identities=18%  Similarity=0.253  Sum_probs=92.3

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc-cccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCC
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGN  181 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~  181 (263)
                      .+|+.|++++...-.....  ...-..+|.|+.|.+++-.+.. ..-....++++|..||+++.+++. +  .+++.+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~--~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWP--KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHH--HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhcccc
Confidence            4678888877544321111  0123457888888888877753 233445678888999999888763 3  27888888


Q ss_pred             CCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc-ch----hhhhcCCCCCEEEecCcccccccCc
Q 024731          182 LEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ-LL----QSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       182 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~----~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      |+.|.+.+=.+.....-..+.++++|++||+|..+..... ..    +.-..+|+|+.||.|++.+++.+-+
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            8888887766654211122778889999999887654321 01    1223578899999998888766544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=1.4e-06  Score=51.02  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=17.7

Q ss_pred             CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC
Q 024731          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI  168 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  168 (263)
                      +|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555544

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=4.1e-08  Score=80.00  Aligned_cols=138  Identities=24%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCc-CCc-cccccCCCCCCCCEEEcCCCcCCCCcCcccc
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL  176 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  176 (263)
                      +..+.+|+.|.+.++++.+.+..    .+....+|+.|+++.+. |+. ...-.+.+++.|..|++++|.+....-...+
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V  281 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV  281 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence            34455555555555555543332    24555556666665542 221 0111234455555555555554322100000


Q ss_pred             CC-CCCCCEEEcCCCCC--CCCCchhhhcCCCCCcEEEcCCCC-CCcccchhhhhcCCCCCEEEecCcc
Q 024731          177 DS-LGNLEELDMSDNAI--NNLVIPKELHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFCT  241 (263)
Q Consensus       177 ~~-l~~L~~L~L~~n~l--~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~  241 (263)
                      .. -++|+.|+++++.-  ..........++++|.+|||++|. ++... ...+.+++.|++|.++.|.
T Consensus       282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheeeehhhhc
Confidence            00 12344444443321  010111123456677777776654 33322 4556666667777666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.14  E-value=4.9e-06  Score=64.33  Aligned_cols=108  Identities=24%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             CCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcE
Q 024731          130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE  209 (263)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  209 (263)
                      ..+...+||++|.+..  ...|..++.|.+|.+++|+++..-|. .-.-+++|+.|.|.+|.+.....-.-+..+++|++
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            4467789999999863  34678889999999999999855443 44556789999999998865322222778899999


Q ss_pred             EEcCCCCCCcccc--hhhhhcCCCCCEEEecCc
Q 024731          210 LILDDSDLHISQL--LQSIASFTSLKYLSMGFC  240 (263)
Q Consensus       210 L~l~~n~l~~~~~--~~~l~~l~~L~~L~l~~n  240 (263)
                      |.+-+|+++...-  --.+..+++|++||++.=
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            9999999874320  123567899999998754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=1.5e-06  Score=71.06  Aligned_cols=141  Identities=28%  Similarity=0.316  Sum_probs=94.9

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  180 (263)
                      ..+.++.+||.+|.|+..  .+++..+.++|.|++|+++.|++...+-..=....+|++|.|.+..+.+.-....+..+|
T Consensus        69 ~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            467899999999999753  233345789999999999999998433221145678999999999887654444667788


Q ss_pred             CCCEEEcCCCCCCCCC---------chh-------------------hhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731          181 NLEELDMSDNAINNLV---------IPK-------------------ELHNFTNLEELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       181 ~L~~L~L~~n~l~~~~---------~~~-------------------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      .++.|+++.|.+.-..         .+.                   .-..++++..+-+..|.+....--+....++.+
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence            8888888888432110         000                   012245666666666766543323445567777


Q ss_pred             CEEEecCcccc
Q 024731          233 KYLSMGFCTLT  243 (263)
Q Consensus       233 ~~L~l~~n~l~  243 (263)
                      .-|+|+.|++.
T Consensus       227 ~~LnL~~~~id  237 (418)
T KOG2982|consen  227 SCLNLGANNID  237 (418)
T ss_pred             hhhhhcccccc
Confidence            77888888875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.91  E-value=8.9e-06  Score=75.61  Aligned_cols=155  Identities=21%  Similarity=0.231  Sum_probs=105.3

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..+..+|++|...- ...|.  ...-.-+|.|+.|.+.+-.+...   +......++|+|..||+|+.+++..  ..++.
T Consensus       122 ~nL~~LdI~G~~~~-s~~W~--~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSELF-SNGWP--KKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SGISR  193 (699)
T ss_pred             HhhhhcCccccchh-hccHH--HHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence            35677788776542 11121  12234689999999998777532   1223467899999999999999843  67889


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCC--chh---hhcCCCCCcEEEcCCCCCCcccchhhhhc
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPK---ELHNFTNLEELILDDSDLHISQLLQSIAS  228 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~--~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~l~~  228 (263)
                      +++|+.|.+.+=.+.....-..+.++++|+.||+|........  ...   .-..+|+|+.||.+++.+....+...+..
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s  273 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS  273 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence            9999999888766653222226778999999999988765421  111   12458999999999999887663344445


Q ss_pred             CCCCCEEE
Q 024731          229 FTSLKYLS  236 (263)
Q Consensus       229 l~~L~~L~  236 (263)
                      -++|+.+-
T Consensus       274 H~~L~~i~  281 (699)
T KOG3665|consen  274 HPNLQQIA  281 (699)
T ss_pred             CccHhhhh
Confidence            55555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=2.2e-07  Score=75.79  Aligned_cols=136  Identities=21%  Similarity=0.159  Sum_probs=96.4

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCc-CCCCcCccccCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGSIDIKGLDSLGNL  182 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L  182 (263)
                      .|+.|||++..++...-.   ..++.+.+|+.|.+.++++.+.+...+.+-..|+.|+++.+. ++..-....+.+++.|
T Consensus       186 Rlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            588999998888643221   236788899999999999998888889999999999998875 3221111245788999


Q ss_pred             CEEEcCCCCCCCCCchhhhcC-CCCCcEEEcCCCCC--CcccchhhhhcCCCCCEEEecCccc
Q 024731          183 EELDMSDNAINNLVIPKELHN-FTNLEELILDDSDL--HISQLLQSIASFTSLKYLSMGFCTL  242 (263)
Q Consensus       183 ~~L~L~~n~l~~~~~~~~l~~-l~~L~~L~l~~n~l--~~~~~~~~l~~l~~L~~L~l~~n~l  242 (263)
                      ..|+++.|.+....-...+.. -++|+.|+++++.-  ....+..-...+++|.+|||++|..
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence            999999998766432222222 25788899988652  1112133456799999999999753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.77  E-value=1.6e-05  Score=63.89  Aligned_cols=66  Identities=27%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             cCCCCCCCEEEccCC--cCCccccccCCCCCCCCEEEcCCCcCCC--CcCccccCCCCCCCEEEcCCCCCCC
Q 024731          127 LSRLNNLKFLYLDYN--HFNNSIFSSLGGLSSLRNLSLIGNRLIG--SIDIKGLDSLGNLEELDMSDNAINN  194 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~  194 (263)
                      +..+++|++|.++.|  .+.+.++.....+++|+++++++|++..  .++  .+..+.+|..|++.+|..+.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhhcchhhhhcccCCccc
Confidence            444555555555555  3333333333334555555555555431  111  23344445555555554433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.72  E-value=6e-05  Score=61.16  Aligned_cols=167  Identities=19%  Similarity=0.174  Sum_probs=114.8

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcc-------cccccCCCCCCCEEEccCCcCCc
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE-------GLDTLSRLNNLKFLYLDYNHFNN  145 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~l~~L~~L~Ls~n~l~~  145 (263)
                      ...+++++||+|.++....-.+ ...+++-.+|+..+++.-.. |....+       ..+.+..+|+|+..+||.|.|..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3468999999999864332222 22356778888888887543 322221       13446789999999999999987


Q ss_pred             ccccc----CCCCCCCCEEEcCCCcCCCCcCc-------------cccCCCCCCCEEEcCCCCCCCCCchhh----hcCC
Q 024731          146 SIFSS----LGGLSSLRNLSLIGNRLIGSIDI-------------KGLDSLGNLEELDMSDNAINNLVIPKE----LHNF  204 (263)
Q Consensus       146 ~~p~~----l~~l~~L~~L~L~~n~l~~~~p~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~----l~~l  204 (263)
                      ..|+.    ++.-+.|++|.+++|.+. .+.-             ....+-|.|+.+....|++.. .+...    +..-
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh  184 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH  184 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence            66654    456789999999999864 2221             122346789999999999865 33321    2333


Q ss_pred             CCCcEEEcCCCCCCccc----chhhhhcCCCCCEEEecCcccc
Q 024731          205 TNLEELILDDSDLHISQ----LLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       205 ~~L~~L~l~~n~l~~~~----~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      ..|+.+.+.+|.|.-..    ....+..+++|+.||+.+|.|+
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            58999999999886331    0123456789999999999987

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.72  E-value=2.2e-05  Score=63.11  Aligned_cols=107  Identities=24%  Similarity=0.327  Sum_probs=73.1

Q ss_pred             CCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCC--cCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731          129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN--RLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN  206 (263)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  206 (263)
                      .+..|+.+.+.+..++.  -..+-.+++|++|.++.|  +..+.++. ....+++|+++++++|++...-.-..+..+.+
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34566666666666652  235667889999999999  66665655 55567999999999999874211112667788


Q ss_pred             CcEEEcCCCCCCcccc--hhhhhcCCCCCEEEec
Q 024731          207 LEELILDDSDLHISQL--LQSIASFTSLKYLSMG  238 (263)
Q Consensus       207 L~~L~l~~n~l~~~~~--~~~l~~l~~L~~L~l~  238 (263)
                      |..|++.+|..+....  -..+.-+++|++||-.
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            8899999987764321  2346667888777643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=1.6e-06  Score=70.21  Aligned_cols=103  Identities=25%  Similarity=0.221  Sum_probs=72.3

Q ss_pred             CCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc
Q 024731          129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE  208 (263)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  208 (263)
                      .+.+.+.|+.-++.++++  ....+|+.|++|.|+-|.++. +.  .+..+++|++|+|..|.|....--..+.++++|+
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-LA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-ch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            456677788888887742  234578888888888888773 33  4677888888888888887743334467888888


Q ss_pred             EEEcCCCCCCcccc----hhhhhcCCCCCEEE
Q 024731          209 ELILDDSDLHISQL----LQSIASFTSLKYLS  236 (263)
Q Consensus       209 ~L~l~~n~l~~~~~----~~~l~~l~~L~~L~  236 (263)
                      .|+|..|.-.|...    ...+..+|+|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888887655431    12355677777776

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.66  E-value=0.00023  Score=61.82  Aligned_cols=69  Identities=14%  Similarity=0.140  Sum_probs=40.6

Q ss_pred             cEEEEecCCCCCccccccccccccccCC-cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC-cCCccccccCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPF-QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN-HFNNSIFSSLG  152 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~  152 (263)
                      ..+.|+++++.+...+          .+ .+|++|+++++.--...|..    +  .++|++|++++| .+. .+|.   
T Consensus        53 ~l~~L~Is~c~L~sLP----------~LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~-sLP~---  112 (426)
T PRK15386         53 ASGRLYIKDCDIESLP----------VLPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEIS-GLPE---  112 (426)
T ss_pred             CCCEEEeCCCCCcccC----------CCCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCccccc-cccc---
Confidence            3557888877664321          12 25888888775443334431    2  357888888887 443 4443   


Q ss_pred             CCCCCCEEEcCCCc
Q 024731          153 GLSSLRNLSLIGNR  166 (263)
Q Consensus       153 ~l~~L~~L~L~~n~  166 (263)
                         +|+.|+++.+.
T Consensus       113 ---sLe~L~L~~n~  123 (426)
T PRK15386        113 ---SVRSLEIKGSA  123 (426)
T ss_pred             ---ccceEEeCCCC
Confidence               46666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.55  E-value=0.00034  Score=50.93  Aligned_cols=36  Identities=17%  Similarity=0.197  Sum_probs=13.3

Q ss_pred             cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcC
Q 024731          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI  163 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  163 (263)
                      |..+++|+.+.+..+ +.......|..+++++.+.+.
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             ccccccccccccccc-ccccceeeeeccccccccccc
Confidence            444444555555443 332222334444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=3.3e-06  Score=68.47  Aligned_cols=103  Identities=19%  Similarity=0.214  Sum_probs=72.7

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  180 (263)
                      .+.+.+.|+..++.+++..      ....++.|++|.||-|+|+..  ..+..+++|++|+|..|.+...-....+.+++
T Consensus        17 dl~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            3567778888888876432      256788888899998888743  34677888888888888876432223567888


Q ss_pred             CCCEEEcCCCCCCCCCchh----hhcCCCCCcEEE
Q 024731          181 NLEELDMSDNAINNLVIPK----ELHNFTNLEELI  211 (263)
Q Consensus       181 ~L~~L~L~~n~l~~~~~~~----~l~~l~~L~~L~  211 (263)
                      +|+.|.|..|.-.+..+..    .+.-+|+|+.||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888888888766654332    356677777664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.41  E-value=0.00076  Score=49.02  Aligned_cols=122  Identities=15%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             ccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC
Q 024731          126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT  205 (263)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  205 (263)
                      .|.+..+|+.+.+.. .+.......|.++++|+.+.+..+ +. .++...+..+++++.+.+.. .+.. ++...+..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~-i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKS-IGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-E-E-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccc-cccccccccc
Confidence            377788899999875 566455567888989999999886 44 45665888888999999976 4433 3344588899


Q ss_pred             CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731          206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      +|+.+++..+ +.... ...+.+. +++.+.+.. .++ .++...|.+..+|
T Consensus        82 ~l~~i~~~~~-~~~i~-~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIG-SSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEH-TTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             cccccccCcc-ccEEc-hhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            9999999876 54333 5667787 899999876 343 4566566665544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.13  E-value=0.0011  Score=57.65  Aligned_cols=120  Identities=16%  Similarity=0.182  Sum_probs=75.7

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      +..+.+++.|++++|.++.. |.     +  .++|++|+++++.--..+|..+  .++|++|++++|.....+|.     
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~-----L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV-----L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC-----C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----
Confidence            44568999999999987654 22     2  3469999999854434666654  25899999999843334554     


Q ss_pred             CCCCCEEEcCCCCCC--CCCchhhhcCC------------------CCCcEEEcCCCCCCcccchhhhhcCCCCCEEEec
Q 024731          179 LGNLEELDMSDNAIN--NLVIPKELHNF------------------TNLEELILDDSDLHISQLLQSIASFTSLKYLSMG  238 (263)
Q Consensus       179 l~~L~~L~L~~n~l~--~~~~~~~l~~l------------------~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~  238 (263)
                        +|+.|++..+...  +.+|.. +..+                  ++|++|++++|... .. |+.+.  .+|+.|+++
T Consensus       113 --sLe~L~L~~n~~~~L~~LPss-Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~L-P~~LP--~SLk~L~ls  185 (426)
T PRK15386        113 --SVRSLEIKGSATDSIKNVPNG-LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-IL-PEKLP--ESLQSITLH  185 (426)
T ss_pred             --ccceEEeCCCCCcccccCcch-HhheeccccccccccccccccCCcccEEEecCCCcc-cC-ccccc--ccCcEEEec
Confidence              4666666655431  123332 2222                  36778888777654 22 33333  478888887


Q ss_pred             Cc
Q 024731          239 FC  240 (263)
Q Consensus       239 ~n  240 (263)
                      .|
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            66

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.64  E-value=0.00098  Score=32.53  Aligned_cols=19  Identities=42%  Similarity=0.504  Sum_probs=10.6

Q ss_pred             CCEEEccCCcCCccccccCC
Q 024731          133 LKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus       133 L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666665 4555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.50  E-value=0.0014  Score=31.93  Aligned_cols=21  Identities=24%  Similarity=0.320  Sum_probs=14.0

Q ss_pred             CCCEEEecCcccccccCccchhc
Q 024731          231 SLKYLSMGFCTLTGALHGQGKLR  253 (263)
Q Consensus       231 ~L~~L~l~~n~l~~~~p~~~l~~  253 (263)
                      +|++||+++|+++ .+|+ .+.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~-~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPS-SFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGT-TTTT
T ss_pred             CccEEECCCCcCE-eCCh-hhcC
Confidence            4677777777777 6776 3544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.35  E-value=2.7e-05  Score=69.43  Aligned_cols=91  Identities=22%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCcc----cccc
Q 024731           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNS----IFSS  150 (263)
Q Consensus        76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~----~p~~  150 (263)
                      ...+.+.+|.+...+.. .-...+...+.|+.|++++|.+.+.......+.+... ..+++|++..|.+++.    +...
T Consensus        89 l~~L~L~~~~l~~~~~~-~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAE-ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHH-HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            34455555555433221 1122344555666666666666533222222223332 3444555555554422    2233


Q ss_pred             CCCCCCCCEEEcCCCcC
Q 024731          151 LGGLSSLRNLSLIGNRL  167 (263)
Q Consensus       151 l~~l~~L~~L~L~~n~l  167 (263)
                      +.....++.++++.|.+
T Consensus       168 L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HhcccchhHHHHHhccc
Confidence            33344555555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.32  E-value=0.013  Score=26.46  Aligned_cols=13  Identities=31%  Similarity=0.381  Sum_probs=6.6

Q ss_pred             CCCEEEecCcccc
Q 024731          231 SLKYLSMGFCTLT  243 (263)
Q Consensus       231 ~L~~L~l~~n~l~  243 (263)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            5666666666665

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.22  E-value=0.00024  Score=63.51  Aligned_cols=171  Identities=24%  Similarity=0.233  Sum_probs=116.5

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc----ccc
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIF  148 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~p  148 (263)
                      ...+..+++++|.+...|...+.......-+.+++|++..|.++..........+.....++.++++.|.+..    .++
T Consensus       114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~  193 (478)
T KOG4308|consen  114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS  193 (478)
T ss_pred             cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence            3467789999999875554333333222236778889999988877665555567778899999999998841    223


Q ss_pred             ccCC----CCCCCCEEEcCCCcCCCC----cCccccCCCCC-CCEEEcCCCCCCCCCchh---hhcCC-CCCcEEEcCCC
Q 024731          149 SSLG----GLSSLRNLSLIGNRLIGS----IDIKGLDSLGN-LEELDMSDNAINNLVIPK---ELHNF-TNLEELILDDS  215 (263)
Q Consensus       149 ~~l~----~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~-L~~L~L~~n~l~~~~~~~---~l~~l-~~L~~L~l~~n  215 (263)
                      ..+.    ...++++|.+++|.++..    +. ..+...++ +..+++..|.+.+.....   .+... ..+++++++.|
T Consensus       194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~-~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n  272 (478)
T KOG4308|consen  194 QALESAASPLSSLETLKLSRCGVTSSSCALLD-EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN  272 (478)
T ss_pred             hhhhhhhcccccHHHHhhhhcCcChHHHHHHH-HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence            3333    467899999999987632    11 13444555 667999999887542221   13444 57799999999


Q ss_pred             CCCccc---chhhhhcCCCCCEEEecCccccc
Q 024731          216 DLHISQ---LLQSIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       216 ~l~~~~---~~~~l~~l~~L~~L~l~~n~l~~  244 (263)
                      .++...   ..+.+..+++++++.++.|.+..
T Consensus       273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             CccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            997553   14556677889999999998874

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.17  E-value=0.013  Score=52.35  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=17.3

Q ss_pred             CCCCCEEEcCCCC-CCCCCchhhhcCCCCCcEEEcCCCC
Q 024731          179 LGNLEELDMSDNA-INNLVIPKELHNFTNLEELILDDSD  216 (263)
Q Consensus       179 l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~  216 (263)
                      +++|++|.+.++. ++..........++.|++|+++++.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4555555554444 3332222223344555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.56  E-value=0.011  Score=52.76  Aligned_cols=116  Identities=23%  Similarity=0.171  Sum_probs=74.2

Q ss_pred             CCCCCCCEEEccCCcCCcc--ccccCCCCCCCCEEEcCCC-cCCCCcC---ccccCCCCCCCEEEcCCCC-CCCCCchhh
Q 024731          128 SRLNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGN-RLIGSID---IKGLDSLGNLEELDMSDNA-INNLVIPKE  200 (263)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~p---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  200 (263)
                      ...+.|+.+.+..+.-...  .-......+.|+.|+++++ ......+   ......+.+|+.|+++++. ++.......
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3467888888877644322  2344556788888888763 2211111   1134456888999999888 555433331


Q ss_pred             hcCCCCCcEEEcCCCC-CCcccchhhhhcCCCCCEEEecCcccc
Q 024731          201 LHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       201 l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      ...+++|++|.+..+. +++..+......++.|++|+++++...
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            2337899999987777 665553444556888999999987653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.58  E-value=0.0015  Score=52.06  Aligned_cols=84  Identities=17%  Similarity=0.041  Sum_probs=63.5

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      ..+|+.||++.|++...|.      -|..++.+..|+++.|.+.-...+     +.....++.+++..|..+ ..|.+++
T Consensus        41 ~kr~tvld~~s~r~vn~~~------n~s~~t~~~rl~~sknq~~~~~~d-----~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGK------NFSILTRLVRLDLSKNQIKFLPKD-----AKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             cceeeeehhhhhHHHhhcc------chHHHHHHHHHhccHhhHhhChhh-----HHHHHHHHHHHhhccchh-hCCcccc
Confidence            4578889998888754443      356677888888888887644333     667777888888888877 6788888


Q ss_pred             CCCCCCEEEcCCCcCC
Q 024731          153 GLSSLRNLSLIGNRLI  168 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~  168 (263)
                      ..++++++++-+|.+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            8899998888888765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.34  E-value=0.065  Score=27.00  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=11.5

Q ss_pred             CCCCEEEecCcccccccCc
Q 024731          230 TSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       230 ~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++|+.|++++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45667777777766 4555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.34  E-value=0.065  Score=27.00  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=11.5

Q ss_pred             CCCCEEEecCcccccccCc
Q 024731          230 TSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       230 ~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++|+.|++++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45667777777766 4555

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.68  E-value=0.0017  Score=51.84  Aligned_cols=88  Identities=15%  Similarity=0.056  Sum_probs=65.9

Q ss_pred             cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (263)
                      .+..+...+.||++.|++......     ++-+..+..|+++.|++. ..|..++....+..+++..|..+ ..|. ++.
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n-----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~  108 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKN-----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK  108 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccc-----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence            355677788888888877654443     566677788888888887 67888888888888888877765 5676 778


Q ss_pred             CCCCCCEEEcCCCCCC
Q 024731          178 SLGNLEELDMSDNAIN  193 (263)
Q Consensus       178 ~l~~L~~L~L~~n~l~  193 (263)
                      ..+.++++++..|.+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            8888888888887754

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.64  E-value=0.044  Score=27.06  Aligned_cols=13  Identities=38%  Similarity=0.578  Sum_probs=4.8

Q ss_pred             CCcEEEcCCCCCC
Q 024731          206 NLEELILDDSDLH  218 (263)
Q Consensus       206 ~L~~L~l~~n~l~  218 (263)
                      +|++|++++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.58  E-value=0.15  Score=25.57  Aligned_cols=14  Identities=50%  Similarity=0.854  Sum_probs=6.1

Q ss_pred             CCCEEEcCCCCCCC
Q 024731          181 NLEELDMSDNAINN  194 (263)
Q Consensus       181 ~L~~L~L~~n~l~~  194 (263)
                      +|++|+|++|.++.
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00369        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            34444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.58  E-value=0.15  Score=25.57  Aligned_cols=14  Identities=50%  Similarity=0.854  Sum_probs=6.1

Q ss_pred             CCCEEEcCCCCCCC
Q 024731          181 NLEELDMSDNAINN  194 (263)
Q Consensus       181 ~L~~L~L~~n~l~~  194 (263)
                      +|++|+|++|.++.
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00370        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            34444444444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.19  E-value=0.12  Score=44.87  Aligned_cols=139  Identities=19%  Similarity=0.133  Sum_probs=80.2

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCc-CCccccccC-CCCCCCCEEEcCCCcCCCC--cCcccc
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSL-GGLSSLRNLSLIGNRLIGS--IDIKGL  176 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~p~~~~  176 (263)
                      ....|+.|+.+++...+..+-  ..--.+.++|+.+-++.++ |+..--..+ .+.+.|+.+++..+.....  +.. .-
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls  368 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-LS  368 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-hc
Confidence            456677777776654221111  0112456788888888776 332222222 2567788888877764321  221 23


Q ss_pred             CCCCCCCEEEcCCCCCCCCC-ch---hhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccc
Q 024731          177 DSLGNLEELDMSDNAINNLV-IP---KELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL  242 (263)
Q Consensus       177 ~~l~~L~~L~L~~n~l~~~~-~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  242 (263)
                      .+++.|+.+.++++...... ..   ..-..+..|+.+.+++++.......+.+..+++|+.+++-+++-
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            46778888888877643321 00   00133567888888888765333245677788888888877653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.97  E-value=0.033  Score=43.57  Aligned_cols=83  Identities=22%  Similarity=0.237  Sum_probs=46.8

Q ss_pred             CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc-CCCCCCCEEEcCCCC-CCCCCchhhhcCCCCCcE
Q 024731          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL-DSLGNLEELDMSDNA-INNLVIPKELHNFTNLEE  209 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~  209 (263)
                      .++.+|-++..|..+..+.+.++++++.|.+.++.-.+..--+.+ .-.++|+.|++++|. |+..... .+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHH
Confidence            456666666666655566666666777776666653222111011 124567777777664 4443323 3667777777


Q ss_pred             EEcCCC
Q 024731          210 LILDDS  215 (263)
Q Consensus       210 L~l~~n  215 (263)
                      |.+.+=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            766553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=0.071  Score=41.74  Aligned_cols=83  Identities=12%  Similarity=0.105  Sum_probs=54.3

Q ss_pred             CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhc-CCCCCcEEEcCCCC-CCcccchhhhhcCCCCC
Q 024731          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELH-NFTNLEELILDDSD-LHISQLLQSIASFTSLK  233 (263)
Q Consensus       156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~  233 (263)
                      .++.+|-++..+...-- +.+..++.++.|.+.++.--+.-.-.-++ -.++|+.|++++|. |+... ...+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhH
Confidence            46778888877764322 26677788888888877643311111122 24789999999775 67555 56778888888


Q ss_pred             EEEecCc
Q 024731          234 YLSMGFC  240 (263)
Q Consensus       234 ~L~l~~n  240 (263)
                      .|++.+=
T Consensus       180 ~L~l~~l  186 (221)
T KOG3864|consen  180 RLHLYDL  186 (221)
T ss_pred             HHHhcCc
Confidence            8877653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=84.13  E-value=0.97  Score=39.48  Aligned_cols=135  Identities=20%  Similarity=0.104  Sum_probs=84.9

Q ss_pred             cCCcCCcEEEccCccc-CCCCCcccccccCCCCCCCEEEccCCcCC--ccccccCCCCCCCCEEEcCCCcCCCCcC----
Q 024731          100 TPFQQLESLYLIGNNI-AGCVENEGLDTLSRLNNLKFLYLDYNHFN--NSIFSSLGGLSSLRNLSLIGNRLIGSID----  172 (263)
Q Consensus       100 ~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p----  172 (263)
                      .+..+|+.+.++.++. +...-.   ..-.+.+.|+.+++..+...  +.+-..-.+++.|+++.++++.......    
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft---~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l  393 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFT---MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL  393 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhh---hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence            4568899999988864 211111   11356788999999888664  2222333467899999999887543220    


Q ss_pred             ccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCC-CcccchhhhhcCCCCCEEEe
Q 024731          173 IKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL-HISQLLQSIASFTSLKYLSM  237 (263)
Q Consensus       173 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~l~~l~~L~~L~l  237 (263)
                      ...-..+..|+.+.|+++.......-..+..+++|+.+++-+++- +...+...-.++|++++.-+
T Consensus       394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            113355778999999999865433223367788999999888763 22221334456777765543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.22  E-value=0.75  Score=23.25  Aligned_cols=18  Identities=39%  Similarity=0.344  Sum_probs=13.9

Q ss_pred             CCCCEEEecCcccccccCc
Q 024731          230 TSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       230 ~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            36788888888887 5676

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.07  E-value=1.2  Score=22.56  Aligned_cols=14  Identities=36%  Similarity=0.377  Sum_probs=7.9

Q ss_pred             CCCCEEEccCCcCC
Q 024731          131 NNLKFLYLDYNHFN  144 (263)
Q Consensus       131 ~~L~~L~Ls~n~l~  144 (263)
                      .+|++|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            35555666666554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.81  E-value=1.2  Score=22.79  Aligned_cols=13  Identities=38%  Similarity=0.508  Sum_probs=6.5

Q ss_pred             CCcEEEcCCCCCC
Q 024731          206 NLEELILDDSDLH  218 (263)
Q Consensus       206 ~L~~L~l~~n~l~  218 (263)
                      +|++|+|++|.+.
T Consensus         3 ~L~~LdL~~N~i~   15 (28)
T smart00368        3 SLRELDLSNNKLG   15 (28)
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (316), Expect = 9e-33
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 26/228 (11%)

Query: 26  GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTR 85
             L +E + L+  +    D   L + W  +    + C ++ V C     +V  +DL   +
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLPD-WSSN---KNPCTFDGVTCR--DDKVTSIDLSS-K 60

Query: 86  NWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN 145
                   +++SL      LESL+L  ++I G      +       +L  L L  N  + 
Sbjct: 61  PLNVGFSAVSSSLL-SLTGLESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSG 114

Query: 146 SI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL-- 201
            +   +SLG  S L+ L++  N L     + G   L +LE LD+S N+I+          
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVVGWVL 173

Query: 202 -HNFTNLEELILDDSDLH--ISQLLQSIASFTSLKYLSMGFCTLTGAL 246
                 L+ L +  + +   +      ++   +L++L +     +  +
Sbjct: 174 SDGCGELKHLAISGNKISGDV-----DVSRCVNLEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 2e-18
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              LE L +  NN +      G+  L   + L+ L +  N  +     ++   + L+ L+
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL-HNFTNLEELILDDSDLHIS 220
           +  N+ +G I       L +L+ L +++N      IP  L      L  L L  +  +  
Sbjct: 254 ISSNQFVGPIP---PLPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFY-G 308

Query: 221 QLLQSIASFTSLKYLSMGFCTLTGAL 246
            +     S + L+ L++     +G L
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGEL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 8/149 (5%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
           P + L+ L L  N   G + +         + L  L L  NHF  ++    G  S L +L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDF---LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT-NLEELILDDSDLHI 219
           +L  N   G + +  L  +  L+ LD+S N  +   +P+ L N + +L  L L  ++   
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFS- 381

Query: 220 SQLLQSI--ASFTSLKYLSMGFCTLTGAL 246
             +L ++      +L+ L +     TG +
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKI 410

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 9/154 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGL 154
             L      L  L L GN+  G V           + L+ L L  N+F+  +   +L  +
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNF--TNLEELIL 212
             L+ L L  N   G +     +   +L  LD+S N  +   I   L       L+EL L
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG-PILPNLCQNPKNTLQELYL 401

Query: 213 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
            ++     ++  ++++ + L  L + F  L+G +
Sbjct: 402 QNNGFT-GKIPPTLSNCSELVSLHLSFNYLSGTI 434

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 5e-15
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 7/143 (4%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L SL+L  N ++G + +     L  L+ L+ L L  N     I   L  + +L  L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL 223
            N L G I   GL +  NL  + +S+N +    IPK +    NL  L L ++      + 
Sbjct: 475 FNDLTGEIP-SGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFS-GNIP 531

Query: 224 QSIASFTSLKYLSMGFCTLTGAL 246
             +    SL +L +      G +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
            P   L+ LYL  N   G +      TLS  + L  L+L +N+ + +I SSLG LS LR+
Sbjct: 391 NPKNTLQELYLQNNGFTGKI----PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 160 LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--VIPKELHNFTNLEELILDDSDL 217
           L L  N L G I  + L  +  LE L +     N+L   IP  L N TNL  + L ++ L
Sbjct: 447 LKLWLNMLEGEI-PQELMYVKTLETLILDF---NDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 218 HISQLLQSIASFTSLKYLSMGFCTLTGAL 246
              ++ + I    +L  L +   + +G +
Sbjct: 503 T-GEIPKWIGRLENLAILKLSNNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 11/145 (7%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
             L  + L  N + G +       + RL NL  L L  N F+ +I + LG   SL  L L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS-Q 221
             N   G+I      ++       ++ N I        + N    +E     + L     
Sbjct: 546 NTNLFNGTIP----AAMFKQ-SGKIAANFIAGK-RYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 222 LLQSIASFTSLKYLSMGFCTLTGAL 246
             + +   ++    ++      G  
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHT 624

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
                   +      G        T     ++ FL + YN  +  I   +G +  L  L+
Sbjct: 607 LSTRNPCNITSRVYGGHT----SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--VIPKELHNFTNLEELIL 212
           L  N + GSI    +  L  L  LD+S    N L   IP+ +   T L E+ L
Sbjct: 663 LGHNDISGSIP-DEVGDLRGLNILDLSS---NKLDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELD 186
           L+RL+      +    +      +     S+  L +  N L G I  K + S+  L  L+
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILN 662

Query: 187 MSDNAINNLVIPKELHNFTNLEELILDDSDLHIS-QLLQSIASFTSLKYLSMGFCTLTG 244
           +  N I+   IP E+ +   L   ILD S   +  ++ Q++++ T L  + +    L+G
Sbjct: 663 LGHNDISG-SIPDEVGDLRGLN--ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 88.7 bits (221), Expect = 7e-21
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 17/224 (7%)

Query: 25  EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTT--GRVIKLDLR 82
           E C  Q++ ALLQ++    +   L + W+   +  +   W  V C+  T   RV  LDL 
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSS-WLPTTDCCNR-TWLGVLCDTDTQTYRVNNLDLS 58

Query: 83  DTRNWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
                    + + +SL      L  LY+ G NN+ G +       +++L  L +LY+ + 
Sbjct: 59  G--LNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHT 111

Query: 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL 201
           + + +I   L  + +L  L    N L G++    + SL NL  +    N I+   IP   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRISG-AIPDSY 169

Query: 202 HNFTNLEELILDDSDLHIS-QLLQSIASFTSLKYLSMGFCTLTG 244
            +F+ L    +  S   ++ ++  + A+  +L ++ +    L G
Sbjct: 170 GSFSKLFT-SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
             S+ +  N + G +        + LN L F+ L  N          G   + + + L  
Sbjct: 176 FTSMTISRNRLTGKIPPT----FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
           N L   +    +    NL  LD+ +N I    +P+ L     L  L +
Sbjct: 231 NSLAFDLG--KVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
           +  + ++L  N++A       L  +    NL  L L  N    ++   L  L  L +L++
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDN 190
             N L G I   G  +L   +    ++N
Sbjct: 276 SFNNLCGEIPQGG--NLQRFDVSAYANN 301

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 5e-19
 Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            LE L ++G ++     ++ +  LS L +L  L + ++  ++SI + +  L  + ++ L 
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
            N  I   DI  L +L  L+ L++  + +++    + + +F  L +L    
Sbjct: 145 YNGAIT--DIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L  + L   N+        L  +   +N+K L ++  H  N  ++ + GLS+L  L ++
Sbjct: 45  SLTYITLANINV------TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL 223
           G   + S  I  L  L +L  LD+S +A ++ ++  +++    +  + L  +   I+ + 
Sbjct: 97  GKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGA-ITDI- 152

Query: 224 QSIASFTSLKYLSMGFCTLT 243
             + +   LK L++ F  + 
Sbjct: 153 MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 7e-17
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              ++ L +   +          + +S L+NL+ L +      +    +L GL+SL  L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           +  +       +  +++L  +  +D+S N    +     L     L+ L +    +H   
Sbjct: 119 ISHSA-HDDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHD-- 173

Query: 222 LLQSIASFTSLKYLS 236
             + I  F  L  L 
Sbjct: 174 -YRGIEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
             K         +++   +   ++SL  ++L    +    D+ G++   N+++L +++  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIH 77

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
             N      +   +NLE L +   D+  S  + +++  TSL  L +      
Sbjct: 78  ATNY---NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHD 125

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.3 bits (209), Expect = 1e-18
 Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 6/165 (3%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            +++FT    L+ L L  +  +              + L  L L  N  +     +   L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L  L L  N +   +  +    L N+ E+ +S N    L          +L+ L+L  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRLMLRR 463

Query: 215 SDLH-ISQLLQSIASFTSLKYLSMGFCTLTG----ALHGQGKLRV 254
             L  +           +L  L +    +       L G  KL +
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 6e-18
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           ++   F     L  L+L+ N+I     N       +  NL  L L +N  +++   +   
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 154 LSSLRNLSLIGNRLIGSIDIK-GLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
           L +L+ L L  N++      +  + +  +L++L++S N I     P   H    L  L L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFL 202

Query: 213 DDSDLH--ISQLLQSIASFTSLKYLSMGFCTLTG 244
           ++  L   +++ L    + TS++ LS+    L+ 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 6e-17
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 11/164 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+ FT + QL SL +  N I+  +E    +   +L  LK L L +N  +     +    +
Sbjct: 42  AANFTRYSQLTSLDVGFNTISK-LEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           +L  L L+ N +    +        NL  LD+S N +++           NL+EL+L ++
Sbjct: 98  NLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNN 155

Query: 216 DL-HISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 254
            +  +      I + +SLK L +    +     G  H  G+L  
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 7/143 (4%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              +  L L  N +            +R + L  L + +N  +         L  L+ L+
Sbjct: 24  PTNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  N L    D K      NL EL +  N+I  +          NL  L L  + L  S 
Sbjct: 80  LQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLS-ST 136

Query: 222 LLQSIASFTSLKYLSMGFCTLTG 244
            L +     +L+ L +    +  
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 13/149 (8%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           + F     L+ L L    +     +        L NL  L L  N+  N     L GL  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 157 LRNLSLIGNRL-------IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE 209
           L  L L  N L            I  L  L +L  L++  N  + +   +   +   L+ 
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKI 564

Query: 210 LILDDSDLHISQLL-QSIASFTSLKYLSM 237
           + L     +++ L      +  SLK L++
Sbjct: 565 IDL--GLNNLNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 16/155 (10%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
            +  L  L L  NN+         D+ + L  L++ +L+YN+  +    SL GL ++R L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 161 SLIGNRLIGSIDIKGLDS--------LGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
           +L  +    SI +  L          L  LE L+M DN I  +          NL+ L L
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSL 360

Query: 213 DDSDLHISQLLQSI---ASFTSLKYLSMGFCTLTG 244
            +S   +  L        + + L  L++    ++ 
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 17/161 (10%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN--NSIFSSL 151
           +    +   + +  +YL  N       N    + + + +L+ L L        +S  S  
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRN----SFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-------VIPKELHNF 204
             L +L  L L  N +   I+   L+ L  LE LD+  N +  L            L   
Sbjct: 477 QPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 205 TNLEELILDDSDLHISQL-LQSIASFTSLKYLSMGFCTLTG 244
           ++L  L L        ++ ++       LK + +G   L  
Sbjct: 536 SHLHILNL--ESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 8/152 (5%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                 + L+ L L  N I   +++E LD  +  ++LK L L  N            +  
Sbjct: 139 GTQVQLENLQELLLSNNKIQA-LKSEELDIFA-NSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 157 LRNLSLIGNRLIGSI--DIKGLDSLGNLEELDMSDNAINNLVIPKELHN--FTNLEELIL 212
           L  L L   +L  S+   +    +  ++  L +S++ ++            +TNL  L L
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT-SNTTFLGLKWTNLTMLDL 255

Query: 213 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
             ++L++     S A    L+Y  + +  +  
Sbjct: 256 SYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 9e-13
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 33/182 (18%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVEN--EGLDTLSRLN--------------------- 131
               F    QLE  +L  NNI     +   GL  +  LN                     
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 132 ------NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL-IGSIDIKGLDSLGN--L 182
                  L+ L ++ N       +   GL +L+ LSL  +   + ++  +   SL +  L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 242
             L+++ N I+ +          +LE L L  +++      Q      ++  + + +   
Sbjct: 384 HILNLTKNKISKI-ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 243 TG 244
             
Sbjct: 443 LQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 29/115 (25%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 79  LDLRD---TRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKF 135
           LDL+     R W+ A              L  L L  N          ++    L  LK 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE----IPVEVFKDLFELKI 564

Query: 136 LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           + L  N+ N    S      SL++L+L  N +          +  NL ELDM  N
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.4 bits (204), Expect = 5e-18
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 7/147 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F   +QLE L    +N+    E         L NL +L + + H   +      GLSSL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L + GN    +        L NL  LD+S   +  L  P   ++ ++L+ L +  +  +
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHN--N 505

Query: 219 ISQLL-QSIASFTSLKYLSMGFCTLTG 244
              L         SL+ L      +  
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.0 bits (203), Expect = 7e-18
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            ++L L  N +          +      L+ L L           +   LS L  L L G
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ 224
           N +           L +L++L   +  + +L     + +   L+EL +  + +   +L +
Sbjct: 86  NPIQSLAL-GAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 225 SIASFTSLKYLSMGFCTLTG 244
             ++ T+L++L +    +  
Sbjct: 144 YFSNLTNLEHLDLSSNKIQS 163

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           NA        LE L L  N ++   +     +     +LK+L L +N    ++ S+  GL
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L +L    + L    +     SL NL  LD+S             +  ++LE L +  
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAG 454

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           +    + L        +L +L +  C L  
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F  F +L+ L L    I              L++L  L L  N   +    +  GLSSL+
Sbjct: 48  FFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L  +   L    +   +  L  L+EL+++ N I +  +P+   N TNLE L L  S   
Sbjct: 104 KLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL--SSNK 160

Query: 219 ISQLLQSIASFTSLKYLSMGFCTL 242
           I  +  +      L  + +   +L
Sbjct: 161 IQSIYCT--DLRVLHQMPLLNLSL 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 9e-16
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
             +     L +L L GN I        L   S L++L+ L     +  +     +G L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE--ELILDD 214
           L+ L++  N +      +   +L NLE LD+S N I ++    +L     +    L LD 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDL 184

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
           S   ++ +         L  L++     +  +
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 15/149 (10%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
            LF     + S  L+   I      E +   S     + L L    F       L  L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDDS 215
           L   S  G      +D      L +LE LD+S N ++      +     T+L+ L L  S
Sbjct: 330 LTFTSNKGGNAFSEVD------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL--S 381

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLTG 244
              +  +  +      L++L      L  
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
            + K L L +N   +    S      L+ L L    +    D     SL +L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGN 86

Query: 191 AINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
            I +L         ++L++L+  +++L  S     I    +LK L++    +  
Sbjct: 87  PIQSL-ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 9e-13
 Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
                +F     LE L + GN+          D  + L NL FL L          ++  
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL-HNFTNLEELI 211
            LSSL+ L++  N             L +L+ LD S N I      +EL H  ++L  L 
Sbjct: 492 SLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLN 549

Query: 212 LDD 214
           L  
Sbjct: 550 LTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 10/154 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGG 153
               F+    L+ L  +  N+A          +  L  LK L + +N   +  +      
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 154 LSSLRNLSLIGNRLIGSI--DIKGLDSLGNLE-ELDMSDNAINNLVIPKELHNFTNLEEL 210
           L++L +L L  N++      D++ L  +  L   LD+S N +N   I         L +L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLHKL 205

Query: 211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
            L ++   ++ +   I     L+   +       
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 27/175 (15%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLD--TLSRLNNLKFLYLDYNHFN---NSIF 148
           +  +       LE   L+          E  D   L  L NL        + +   + I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL------------- 195
                L+++ + SL+   +    D          + L++ +                   
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 196 -----VIPKELHNFTNLEELILDDSDLHISQLL-QSIASFTSLKYLSMGFCTLTG 244
                       +  +LE L L  + L       QS    TSLKYL + F  +  
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 10/156 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKF-LYLDYNHFNNSIFSSLGGLS 155
             F+    LE L L  N I   +    L  L ++  L   L L  N  N     +   + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-----VIPKELHNFTNLEEL 210
            L  L+L  N    ++    +  L  LE   +      N           L    NL   
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 211 ILDDSDLHIS--QLLQSIASFTSLKYLSMGFCTLTG 244
               + L      ++      T++   S+   T+  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 12/152 (7%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L  L L  N  +  V    +  L+ L   + +  ++ +  N        L  L NL++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 164 GNRL-----IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
             RL          I   + L N+    +    I  +    +       + L L   +  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLEL--VNCK 315

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTGALHGQG 250
             Q         SLK L+        A     
Sbjct: 316 FGQFPTL--KLKSLKRLTFTSNKGGNAFSEVD 345

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +FT  + L  L L    +            + L++L+ L + +N+F +        L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           +SL+ L    N ++ S   +      +L  L+++ N
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 7/151 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +++ F  F  L+ L L   ++     +E    L  L+ LK L L  N F N    S    
Sbjct: 270 SSNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILD 213
            SL +LS+ GN     +    L++L NL ELD+S + I        +L N ++L+ L L 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 214 DSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
            ++    +  ++      L+ L + F  L  
Sbjct: 385 YNEPLSLK-TEAFKECPQLELLDLAFTRLKV 414

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F    +L++L L  N +    E      LS    LK L+      ++  F  L    +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           +L L  N  I SI +        L+ LD  +NAI+ L   +++ +      L L+ +   
Sbjct: 133 SLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNGND 190

Query: 219 ISQLLQSIASFTSLKYLSMG 238
           I+ +          + L+ G
Sbjct: 191 IAGIEPGAFDSAVFQSLNFG 210

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 9/166 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
                   + L  L L  ++I           L  L++L+ L L YN   +    +    
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L  L L   RL          +L  L+ L++S + ++     +       L+ L L  
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQG 458

Query: 215 SDLH--ISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 254
           +       Q   S+ +   L+ L + FC L+     A      +  
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 34/140 (24%), Positives = 44/140 (31%), Gaps = 7/140 (5%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            E L    N +          T SRL NL FL L           +      L  L L  
Sbjct: 35  TECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ 224
           N LI  +    L     L+ L      I+++     LHN   LE L L  + +  S  L 
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHIS-SIKLP 147

Query: 225 SIASFTSLKYLSMGFCTLTG 244
                  LK L      +  
Sbjct: 148 KGFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 14/183 (7%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137
            L+   T+N             +  Q L        +      +  +       +++ + 
Sbjct: 206 SLNFGGTQNLLVI---FKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESIN 260

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVI 197
           L  ++F N   ++    S L+ L L     +  +   GL  L  L++L +S N   NL  
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATH-LSELP-SGLVGLSTLKKLVLSANKFENL-C 317

Query: 198 PKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT------GALHGQGK 251
                NF +L  L +  +   +      + +  +L+ L +    +         L     
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 252 LRV 254
           L+ 
Sbjct: 378 LQS 380

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 10/153 (6%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           M  +  +  + L+ L+ I   I+  ++      L     L+ LYL  NH ++        
Sbjct: 96  MAETALSGPKALKHLFFIQTGISS-IDF---IPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLE--ELDMSDNAINNLVIPKELHNFTNLEELI 211
              L+ L    N  I  +  + + SL       L+++ N I    I     +    + L 
Sbjct: 152 TEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAG--IEPGAFDSAVFQSLN 208

Query: 212 LDDSDLHISQLLQ-SIASFTSLKYLSMGFCTLT 243
              +   +        ++  SL   +       
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
             +  LF     L+ L L GN+       +  ++L  L  L+ L L +   ++    +  
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
            L  + ++ L  NRL  S  I+ L  L  +  L+++ N I+ + +P  L   +    + L
Sbjct: 498 SLKMMNHVDLSHNRLT-SSSIEALSHLKGI-YLNLASNHISII-LPSLLPILSQQRTINL 554

Query: 213 DDSDLH 218
             + L 
Sbjct: 555 RQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
            N+ + L   +N       ++   L +L  L L   + I  I      S   L+ L ++ 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA 90

Query: 190 NAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           N +  +     L     L+ L    + +        + +  +L+ L +G   ++ 
Sbjct: 91  NPLIFM-AETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISS 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 96  ASLFTPFQQLE--SLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
               +  QQ    SL L GN+IAG                + L          IF  L  
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPG-----AFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 154 --LSSLRNLSLIGNRL--IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE 209
             + SL   +        I     +GL  + ++E +++  +   N+      H F+ L+E
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNI-SSNTFHCFSGLQE 282

Query: 210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           L L  +  H+S+L   +   ++LK L +       
Sbjct: 283 LDL--TATHLSELPSGLVGLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
           L+L+   N          +      +LE L L   ++     +      + L  +  + L
Sbjct: 454 LNLQG--NHFPKGNIQKTNSLQTLGRLEILVLSFCDL----SSIDQHAFTSLKMMNHVDL 507

Query: 139 DYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
            +N   +S   +L  L  +  L+L  N  I  I    L  L     +++  N ++
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNH-ISIILPSLLPILSQQRTINLRQNPLD 560

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 5e-17
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 19/158 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L+L GN +        +  L+ L NL +L+LD N   +   SSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLK 112

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           +LSL  N +    DI GL  L  LE L + +N I ++     L   T L+ L L+D+ + 
Sbjct: 113 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQI- 165

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT--GALHGQGKLRV 254
               +  +A  T L+ L +    ++   AL G   L V
Sbjct: 166 --SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 201

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 3e-16
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 27/158 (17%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLN----------------NLKFLYLDYNHFNN 145
           F +     L   ++   V    L+++ ++                 N+  L+L+ N   +
Sbjct: 20  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 79

Query: 146 SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT 205
                L  L +L  L L  N++    D+  L  L  L+ L +  N I+++     L +  
Sbjct: 80  --IKPLTNLKNLGWLFLDENKI---KDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLP 131

Query: 206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
            LE L L ++ +     +  ++  T L  LS+    ++
Sbjct: 132 QLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 2e-14
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L+SL L  N I        ++ L  L  L+ LYL  N    +  + L  L+ L  LSL 
Sbjct: 110 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLE 161

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
            N++    DI  L  L  L+ L +S N I++L   + L    NL+ L L  
Sbjct: 162 DNQIS---DIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 1e-13
 Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
           +     +   I      + +             L      +    +   L+S+  +    
Sbjct: 1   MGETITVSTPI------KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ 224
           + +     ++G+  L N+ +L ++ N + ++   K L N  NL  L LD++   I   L 
Sbjct: 53  SDIK---SVQGIQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDEN--KIKD-LS 103

Query: 225 SIASFTSLKYLSMGFCTLT 243
           S+     LK LS+    ++
Sbjct: 104 SLKDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 4e-13
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             QLESLYL  N I        +  LSRL  L  L L+ N  ++     L GL+ L+NL 
Sbjct: 130 LPQLESLYLGNNKI------TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLY 181

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  N +    D++ L  L NL+ L++      N  I     N      +   D  L   +
Sbjct: 182 LSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINH-QSNLVVPNTVKNTDGSLVTPE 237

Query: 222 LLQSIASFTSLKYL 235
           ++     +      
Sbjct: 238 IISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 6/99 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                  +L++LYL  N+I        L  L+ L NL  L L      N   +    L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
              +      L+    I                   N +
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 7/149 (4%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           + F   ++L+ L    + +    E         L  L +L + Y +          GL+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216
           L  L + GN    +       +  NL  LD+S   +  +           L+ L +  + 
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHN- 507

Query: 217 LHISQL-LQSIASFTSLKYLSMGFCTLTG 244
            ++  L         SL  L   F  +  
Sbjct: 508 -NLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 6/143 (4%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
               +++ L  N +    +     + S  + L++L L           +  GL  L NL 
Sbjct: 31  PSSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L GN +  S        L +LE L   +  + +L     +     L++L +  + +H  +
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 222 LLQSIASFTSLKYLSMGFCTLTG 244
           L    ++ T+L ++ + +  +  
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 9e-15
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 9/147 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           +  F+ F +L+ L L    I   +E+        L++L  L L  N   +    S  GL+
Sbjct: 49  SYSFSNFSELQWLDLSRCEIET-IED---KAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           SL NL  +  +L        +  L  L++L+++ N I++  +P    N TNL  + L  S
Sbjct: 105 SLENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL--S 161

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTL 242
             +I  +  ++     L+       +L
Sbjct: 162 YNYIQTI--TVNDLQFLRENPQVNLSL 186

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +F     L +L + GN+      +   +  +   NL FL L         +     L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L+ L++  N L+  +D    + L +L  LD S N I         H   +L    L +
Sbjct: 497 HRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTN 554

Query: 215 SDLH 218
           + + 
Sbjct: 555 NSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 7/150 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           +     L +L L GN I          + S L +L+ L        +     +G L +L+
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI--LDDSD 216
            L++  N +          +L NL  +D+S N I  +    +L       ++   LD S 
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSL 190

Query: 217 LHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
             I  +         L  L++     +  +
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 9e-13
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 8/150 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGG 153
             S F   ++L  L +   N     +         L +L  L +  N F ++  S+    
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD 213
            ++L  L L   + +  I     D+L  L+ L+MS N +  L      +   +L  L   
Sbjct: 472 TTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCS 529

Query: 214 DSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
            + +  S+         SL + ++   ++ 
Sbjct: 530 FNRIETSK-GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 32/150 (21%), Positives = 47/150 (31%), Gaps = 11/150 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL--GGLSS 156
                 L+SL L  N                L +L +L L  N  + S   S    G +S
Sbjct: 324 TLDLPFLKSLTLTMNKG------SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216
           LR+L L  N     I       L  L+ LD   + +  +       +   L  L +  ++
Sbjct: 378 LRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 217 LHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
             I          TSL  L M   +     
Sbjct: 436 TKIDF-DGIFLGLTSLNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 12/158 (7%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSS 150
              +   F+    LE+L  +   +A          + +L  LK L + +N  ++  + + 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL----EELDMSDNAINNLVIPKELHNFTN 206
              L++L ++ L  N  I +I +  L  L         LDMS N I+   I  +      
Sbjct: 149 FSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDF--IQDQAFQGIK 205

Query: 207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           L EL L  +    + +   + +   L    +       
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                   L+ L +  N I  C         S L NL  + L YN+      + L  L  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 157 LRN----LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
                  L +  N  I  I  +    +  L EL +  N  ++ ++   L N   L    L
Sbjct: 179 NPQVNLSLDMSLNP-IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 213 DDSDLHISQLLQSIA--SFTSLKYLSMGFCTLTG 244
              +    + L+         L  +++    LT 
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLD--TLSRLNNLKFLYLDYNHFNNS--IFSSLG 152
           +       L    LI          E  +   +  L ++        + N+         
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
            L+++  +SL G  +     ++ +      + L +    +          +   L+ L L
Sbjct: 283 CLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQF----PTLDLPFLKSLTL 335

Query: 213 DDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
             +   IS       +  SL YL +    L+ 
Sbjct: 336 TMNKGSIS---FKKVALPSLSYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 15/148 (10%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSSLRNLSL 162
              SL +  N I    +        +   L  L L  N  +++I    L  L+ L    L
Sbjct: 182 VNLSLDMSLNPIDFIQDQ-----AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 163 IGNRLIGSIDIKGLD-----SLGNLEELDMSDNAINNLVI-PKELHNFTNLEELILDDSD 216
           I        +++  +      L ++   +      N+      + H   N+  + L  + 
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL--AG 294

Query: 217 LHISQLLQSIASFTSLKYLSMGFCTLTG 244
           + I   L+ +      + LS+  C L  
Sbjct: 295 VSIKY-LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
            ++  +F    +L+ L +  NN+            ++L +L  L   +N    S      
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 153 GLSSLRNLSLIGNRL 167
              SL   +L  N +
Sbjct: 543 FPKSLAFFNLTNNSV 557

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L SL L  N I      E +  L+ L +L +     N   +   + +  ++ L 
Sbjct: 173 IANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLN 224

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           +L +  N++    D+  L +L  L  L++  N I+++     + + T L+ L +  + + 
Sbjct: 225 SLKIGNNKI---TDLSPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQIS 278

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTG 244
               +  + + + L  L +    L  
Sbjct: 279 D---ISVLNNLSQLNSLFLNNNQLGN 301

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 6e-16
 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 16/146 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L +LY+  N I        +  L  L NL+ LYL+ ++ ++   S L  L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKI------TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           +L+L  N  +   D+  L ++  L  L ++++ + ++     + N T+L  L L+ + + 
Sbjct: 136 SLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIE 190

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTG 244
               +  +AS TSL Y +     +T 
Sbjct: 191 D---ISPLASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 16/146 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  LYL  +NI        +  L+ L  +  L L  NH  + + S L  ++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLN 158

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L++  +++    D+  + +L +L  L ++ N I ++     L + T+L       + + 
Sbjct: 159 YLTVTESKV---KDVTPIANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQIT 212

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTG 244
               +  +A+ T L  L +G   +T 
Sbjct: 213 D---ITPVANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              LE L L GN I        +  LS L  L  LY+  N    +  S+L  L++LR L 
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  + +    DI  L +L  +  L++  N  +NL     L N T L  L + +S +   +
Sbjct: 117 LNEDNI---SDISPLANLTKMYSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKV---K 168

Query: 222 LLQSIASFTSLKYLSMGFCTLTG 244
            +  IA+ T L  LS+ +  +  
Sbjct: 169 DVTPIANLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.0 bits (180), Expect = 3e-15
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 16/146 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               + +  L + G  +        +  +  L NL++L L+ N   +   S L  L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           NL +  N++    DI  L +L NL EL ++++ I+++     L N T +  L L     H
Sbjct: 92  NLYIGTNKI---TDISALQNLTNLRELYLNEDNISDI---SPLANLTKMYSLNL--GANH 143

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTG 244
               L  +++ T L YL++    +  
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.9 bits (172), Expect = 4e-14
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                QL  L +  N I        ++ +  L  LK L +  N  ++   S L  LS L 
Sbjct: 239 LANLSQLTWLEIGTNQI------SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
           +L L  N+ +G+ D++ +  L NL  L +S N I ++   + L + + ++     +
Sbjct: 291 SLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITDI---RPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.1 bits (170), Expect = 8e-14
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 17/151 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +     L   ++        + T   L ++  L +      +     +  L++L  L+
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L GN++    DI  L +L  L  L +  N I ++     L N TNL EL L++ ++    
Sbjct: 73  LNGNQI---TDISPLSNLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNISD-- 124

Query: 222 LLQSIASFTSLKYLSMGFCTLTGALHGQGKL 252
            +  +A+ T +  L++G       L     +
Sbjct: 125 -ISPLANLTKMYSLNLGANHNLSDLSPLSNM 154

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
             +L  +   I        +   + L       L      + +  +   L S+  L + G
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ 224
            ++     I+G++ L NLE L+++ N I ++     L N   L  L +  + +     + 
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITD---IS 104

Query: 225 SIASFTSLKYLSMGFCTLTG 244
           ++ + T+L+ L +    ++ 
Sbjct: 105 ALQNLTNLRELYLNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +L+ L +  N I        +  L+ L+ L  L+L+ N   N     +GGL++L 
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAI 192
            L L  N +    DI+ L SL  ++  D ++  I
Sbjct: 315 TLFLSQNHI---TDIRPLASLSKMDSADFANQVI 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.4 bits (186), Expect = 8e-16
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 17/146 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 LE L +  N +        +  L++L NL+ L    N  ++   + LG L++L 
Sbjct: 173 LANLTTLERLDISSNKV------SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 224

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            LSL GN+L    DI  L SL NL +LD+++N I+NL     L   T L EL L  + + 
Sbjct: 225 ELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQI- 277

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTG 244
               +  +A  T+L  L +    L  
Sbjct: 278 --SNISPLAGLTALTNLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L  L L  N I        +  L+ L  L  L L+ N   +   S +  L +L 
Sbjct: 261 LSGLTKLTELKLGANQI------SNISPLAGLTALTNLELNENQLED--ISPISNLKNLT 312

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L+L  N +    DI  + SL  L+ L   +N ++++     L N TN+  L    + + 
Sbjct: 313 YLTLYFNNIS---DISPVSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQI- 365

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTG 244
               L  +A+ T +  L +     T 
Sbjct: 366 --SDLTPLANLTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 18/143 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L  +    N +        +  L  L  L  + ++ N   +   + L  L++L  L+
Sbjct: 67  LNNLTQINFSNNQL------TDITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  N++    DI  L +L NL  L++S N I+++     L   T+L++L   +    +  
Sbjct: 119 LFNNQIT---DIDPLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVTDLK- 171

Query: 222 LLQSIASFTSLKYLSMGFCTLTG 244
               +A+ T+L+ L +    ++ 
Sbjct: 172 ---PLANLTTLERLDISSNKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 8e-15
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 18/146 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  L L  N I        +  LS L +L+ L         +    L  L++L 
Sbjct: 130 LKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L +  N++    DI  L  L NLE L  ++N I+++     L   TNL+EL L+ + L 
Sbjct: 181 RLDISSNKV---SDISVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQL- 233

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTG 244
             + + ++AS T+L  L +    ++ 
Sbjct: 234 --KDIGTLASLTNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            T   Q+ +L      I      + +D +  LNNL  +    N   +   + L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           ++ +  N++    DI  L +L NL  L + +N I ++     L N TNL  L L  + + 
Sbjct: 94  DILMNNNQI---ADITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTIS 147

Query: 219 ISQLLQSIASFTSLKYLSMG 238
               + +++  TSL+ LS G
Sbjct: 148 D---ISALSGLTSLQQLSFG 164

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 8e-14
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +     L   N+          + + L+ +  L  D     +     +  L++L  ++
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
              N+L    DI  L +L  L ++ M++N I ++     L N TNL  L L ++ +    
Sbjct: 75  FSNNQL---TDITPLKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITD-- 126

Query: 222 LLQSIASFTSLKYLSMGFCTLTG 244
            +  + + T+L  L +   T++ 
Sbjct: 127 -IDPLKNLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +L  + +  N I        +  L+ L NL  L L  N   +     L  L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLN 137

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L L  N +    DI  L  L +L++L       N +   K L N T LE L +  + + 
Sbjct: 138 RLELSSNTI---SDISALSGLTSLQQLSFG----NQVTDLKPLANLTTLERLDISSNKVS 190

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTG 244
               +  +A  T+L+ L      ++ 
Sbjct: 191 D---ISVLAKLTNLESLIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 11/121 (9%)

Query: 124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183
           + T + L       L   +  +++  S   L  +  L      +     I G++ L NL 
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGI---KSIDGVEYLNNLT 71

Query: 184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           +++ S+N + ++     L N T L +++++++ +     +  +A+ T+L  L++    +T
Sbjct: 72  QINFSNNQLTDI---TPLKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQIT 125

Query: 244 G 244
            
Sbjct: 126 D 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 11/103 (10%)

Query: 144 NNSI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL 201
           +  I    +   L+      L    +    D      L  +  L      I ++     +
Sbjct: 11  DTPINQIFTDTALAEKMKTVLGKTNV---TDTVSQTDLDQVTTLQADRLGIKSI---DGV 64

Query: 202 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
               NL ++   ++ L     +  + + T L  + M    +  
Sbjct: 65  EYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L    N I        L  L+ L  +  L L+   + N+  +    +S   
Sbjct: 349 LANLTNINWLSAGHNQI------SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
            +  +   LI    I      G+  E D++ N  +     +  + F+    +  
Sbjct: 403 TVKNVTGALIAPATIS---DGGSYTEPDITWNLPSYT--NEVSYTFSQPVTIGK 451

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 8/89 (8%)

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
            L + ++  +  I    I    +L    +  +    + + V      +   +  L  D  
Sbjct: 2   PLGSATITQDTPIN--QIFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRL 56

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLTG 244
            +     +  +    +L  ++     LT 
Sbjct: 57  GIKS---IDGVEYLNNLTQINFSNNQLTD 82

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 17/145 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 + +L   G  +        ++ +  LNNL  L L  N   +   + L  L+ + 
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L L GN L    ++  +  L +++ LD++   I ++     L   +NL+ L LD + + 
Sbjct: 89  ELELSGNPL---KNVSAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQIT 142

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT 243
               +  +A  T+L+YLS+G   ++
Sbjct: 143 N---ISPLAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 17/145 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               Q +++L L    I        +  L+ L+NL+ LYLD N   N   S L GL++L+
Sbjct: 103 IAGLQSIKTLDLTSTQI------TDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQ 154

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            LS+   ++    D+  L +L  L  L   DN I+++     L +  NL E+ L ++   
Sbjct: 155 YLSIGNAQVS---DLTPLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNN--Q 206

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT 243
           IS  +  +A+ ++L  +++   T+T
Sbjct: 207 ISD-VSPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 17/142 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
                 +    +N+          T + L+ +  L              +  L++L  L 
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  N++    D+  L +L  + EL++S N + N+     +    +++ L L  +   I+ 
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTST--QITD 121

Query: 222 LLQSIASFTSLKYLSMGFCTLT 243
            +  +A  ++L+ L +    +T
Sbjct: 122 -VTPLAGLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L+ L +    +        L  L+ L+ L  L  D N  ++   S L  L +L 
Sbjct: 147 LAGLTNLQYLSIGNAQV------SDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLI 198

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            + L  N++    D+  L +  NL  + +++  I N   P   +N   +  ++   S   
Sbjct: 199 EVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITN--QPVFYNNNLVVPNVVKGPSGAP 253

Query: 219 IS 220
           I+
Sbjct: 254 IA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 11/102 (10%)

Query: 144 NNSI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL 201
             +I        L++   ++   + +    D      L  +  L      +  +   + +
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTI---EGV 59

Query: 202 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
               NL  L L   D  I+  L  + + T +  L +    L 
Sbjct: 60  QYLNNLIGLEL--KDNQITD-LAPLKNLTKITELELSGNPLK 98

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
           ++L  L  + N + G      L        L  L L YN       +  G    + NLS 
Sbjct: 330 KKLGMLECLYNQLEGK-----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV------IPKELHNFTNLEELILDDSD 216
             N+L    +I    S+  +  +D S N I ++       +        N+  + L ++ 
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 217 LHISQLLQSIASFTSLKYLSMGFCTLTG 244
           +      +  ++ + L  +++    LT 
Sbjct: 445 IS-KFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 20/164 (12%), Positives = 47/164 (28%), Gaps = 24/164 (14%)

Query: 103 QQLESLYLIGNNIAGCVENEGL---------------DTLSRLNNLKFLYLDYNHFNNSI 147
            +L   Y+  +        E                      L +L  + +        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 148 FSSLGGLSSLRNLSLIGNRLIGSIDIKG-------LDSLGNLEELDMSDNAINNLVIPKE 200
            + L  L  ++ +++  NR I    +K              ++ + +  N +    +   
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 201 LHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           L     L  L    +   +   L +  S   L  L++ +  +T 
Sbjct: 326 LQKMKKLGMLECLYN--QLEGKLPAFGSEIKLASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 18/155 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN-------NSIFSSLGGL 154
              + S+ L  N I+   +    +  S  + L  + L  N               +    
Sbjct: 432 GINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L ++ L  N+L    D     +L  L  +D+S N+ +    P +  N + L+   + +
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRN 545

Query: 215 S-DLHISQLL----QSIASFTSLKYLSMGFCTLTG 244
             D   ++ L    + I    SL  L +G   +  
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 16/164 (9%), Positives = 53/164 (32%), Gaps = 21/164 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN-------NSIF 148
           A+     +Q+E+L    N +              ++ +  +   YN          + + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFD---AKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL------VIPKELH 202
            +     ++ +++L  N++      +   +   L  +++  N +  +         +   
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 203 NFTNLEELILDDSDLHISQLLQSIA--SFTSLKYLSMGFCTLTG 244
           N   L  + L      +++L       +   L  + + + + + 
Sbjct: 486 NTYLLTSIDL--RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 29/215 (13%), Positives = 56/215 (26%), Gaps = 29/215 (13%)

Query: 52  WVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
           W  ++          V  N   GRV  L L            +  ++     +LE L L 
Sbjct: 60  WNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR----VPDAIGQ-LTELEVLALG 113

Query: 112 GNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL--SSLRNLSLIGNRLIG 169
            +         G   +S   + +       H+  +          S L    +  +    
Sbjct: 114 SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD--------------S 215
           SI  K         ++    N I    + K +   T L +  + +               
Sbjct: 174 SI-KKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 216 DLHISQLLQ----SIASFTSLKYLSMGFCTLTGAL 246
           +   +Q  +       +   L  + +  C     L
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 6e-12
 Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 17/155 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF--------NNSIFSS 150
           +   + L  + +        +       L  L  ++ + +  N          +    + 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210
                 ++ + +  N L        L  +  L  L+   N +          +   L  L
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIKLASL 358

Query: 211 ILDDSDLHISQLLQSIASF-TSLKYLSMGFCTLTG 244
            L  +   I+++  +   F   ++ LS     L  
Sbjct: 359 NL--AYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 6/115 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEG-LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
            T    L  + L  N+ +          TL             N         +    SL
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
             L +  N +    +        N+  LD+ DN   ++     +  +      +L
Sbjct: 569 TQLQIGSNDIRKVNE----KITPNISVLDIKDNPNISI-DLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 103 QQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
             L+   +     A          + ++   +L  L +  N     +   +    ++  L
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVL 592

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
            +  N  I SID+  +          +  +   ++
Sbjct: 593 DIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDI 626

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 8e-15
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F   +QLE L    +N+    E         L NL +L + + H   +      GLSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDDSDL 217
            L + GN    +        L NL  LD+S   +    +     ++ ++L+ L +  +  
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHN-- 209

Query: 218 HISQLLQSIASFTSLKYL 235
           +   L      +  L  L
Sbjct: 210 NFFSL--DTFPYKCLNSL 225

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 8/162 (4%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +F    QL  L L  N ++   +     +     +LK+L L +N    ++ S+  GL 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 101

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
            L +L    + L    +     SL NL  LD+S             +  ++LE L +  +
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGN 160

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 253
               + L        +L +L +  C L      A +    L+
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +F     LE L + GN+          D  + L NL FL L          ++   L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL--HNFTNLEELIL 212
           SSL+ L++  N    S+D      L +L+ LD S N I      K+   H  ++L  L L
Sbjct: 199 SSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMT--SKKQELQHFPSSLAFLNL 255

Query: 213 DDSDLH 218
             +D  
Sbjct: 256 TQNDFA 261

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 7/149 (4%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLS 155
            +       E L L  N I          +   L  L+ L L   +   +I   +   L 
Sbjct: 18  QVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDD 214
           +LR L L  ++ I  +       L +L EL +    +++ V+      N   L  L L  
Sbjct: 74  NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           + +    L  S     SLK +      + 
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 7/152 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            AS F   +QL+ L L        ++    +    L NL+ L L  +        +  GL
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 155 SSLRNLSLIGNRL-IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD 213
             L  L L    L    +      +L  L  LD+S N I +L +        +L+ +   
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 214 DSDLHI--SQLLQSIASFTSLKYLSMGFCTLT 243
            + + +     L+ +    +L + S+   +L 
Sbjct: 157 SNQIFLVCEHELEPL-QGKTLSFFSLAANSLY 187

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.5 bits (165), Expect = 5e-13
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 19/163 (11%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N+ +F   + L+ L L  N I   + +   +    L+NL+ L L YN       S+  GL
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINK-IAD---EAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELH-------NFTNL 207
             +  + L  N  I  I  +    L  L+ LD+ DNA+  +     +            L
Sbjct: 338 PKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396

Query: 208 EELILDDSDLHIS-------QLLQSIASFTSLKYLSMGFCTLT 243
            ++ L  + +H+S        +L  +     L+ L +     +
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSS 150
           ++++   F     L  L L    ++  V  +G      L  L  L L  N   +  +  S
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 151 LGGLSSLRNLSLIGNRL--IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE 208
            G L+SL+++    N++  +   +++ L     L    ++ N++ + V            
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 209 ELILDDSDLHISQL 222
            ++L+  D+  +  
Sbjct: 203 NMVLEILDVSGNGW 216

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 27/185 (14%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN------- 145
            + +S F    ++  + L  N+I          T   L  L+ L L  N           
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHI----AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383

Query: 146 -SIFSSLGGLSSLRNLSLIGNRLIGS-IDIKGLDS------LGNLEELDMSDNAINNLVI 197
             IF S   L +L  ++L  N +  S   ++ LD       + +L+ L ++ N  ++   
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 198 PKELHNFTNLEELILDDSDLHISQL----LQSIASFTSLKYLSMGFCTLT----GALHGQ 249
            +      +LE+L L ++ L ++             + L+ L +    L     G     
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503

Query: 250 GKLRV 254
             LR 
Sbjct: 504 TALRG 508

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            +       +NI    +      L+R + ++ L L +    +        L  L+ L+L 
Sbjct: 241 HIMGAGFGFHNIKD-PDQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL 223
            N+ I  I  +    L NL+ L++S N +  L      +    +  + L  + + I Q  
Sbjct: 299 YNK-INKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQ-D 355

Query: 224 QSIASFTSLKYLSMGFCTLT 243
           Q+      L+ L +    LT
Sbjct: 356 QTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENE-GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              +    LE L+L  N +    E E   D    L++L+ LYL++N+ N+        L+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           +LR LSL  NRL     +   D   NLE LD+S N +           F +L  L +  +
Sbjct: 505 ALRGLSLNSNRL---TVLSHNDLPANLEILDISRNQLLAP----NPDVFVSLSVLDITHN 557

Query: 216 DLH 218
              
Sbjct: 558 KFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 17/165 (10%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
           L L      ++    +    F   + L  L L  N I     +    +  +LN+LK +  
Sbjct: 102 LRLYFCGLSDAV---LKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDF 155

Query: 139 DYNHFNNSIFSSLGGLS--SLRNLSLIGNRLIGSIDIKGLDSLG-----NLEELDMSDNA 191
             N         L  L   +L   SL  N L   + +     +       LE LD+S N 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLS 236
               +      NF+N        S +    ++ +   F ++K   
Sbjct: 216 WTVDI----TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137
           +L L +     + E  +   +F     L+ LYL  N +     +      S L  L+ L 
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL----NSLPPGVFSHLTALRGLS 510

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVI 197
           L+ N       S     ++L  L +  N+ + + +    D   +L  LD++ N       
Sbjct: 511 LNSNRLTV--LSHNDLPANLEILDISRNQ-LLAPN---PDVFVSLSVLDITHNKFICECE 564

Query: 198 PKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
                N+ N   + +      I  +     S  SL  LS   C     L
Sbjct: 565 LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 14/160 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L +L L  N +   + +        L+ L+ L+L  N   +    +   + SL 
Sbjct: 119 FNGLASLNTLELFDNWLTV-IPS---GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL- 217
            L L   + +  I     + L NL+ L++    I ++     L     LEEL +  +   
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHFP 231

Query: 218 HISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 253
            I     S    +SLK L +    ++     A  G   L 
Sbjct: 232 EIRP--GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     L+ L L   NI        +  L+ L  L+ L +  NHF      S  GLS
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           SL+ L ++ ++ +  I+    D L +L EL+++ N +++L           L EL L  +
Sbjct: 243 SLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHN 300

Query: 216 DLH----ISQLLQSIASFTSLKYLSMGFCTLTGALHGQ 249
             +    I  L   +  +        G C     + G+
Sbjct: 301 PWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGR 338

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 16/164 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A  F     LE L L  N+I   +E       + L +L  L L  N        +   LS
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR-QIEV---GAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKE-LHNFTNLEELILD 213
            LR L L  N  I SI     + + +L  LD+ +     L  I +       NL+ L L 
Sbjct: 148 KLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGEL--KKLEYISEGAFEGLFNLKYLNLG 204

Query: 214 DSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 253
             ++     + ++     L+ L M          G+ HG   L+
Sbjct: 205 MCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 12/129 (9%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           N ++L L  N+       +   L  L  L L  N  I  I++   + L +L  L++ DN 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW 134

Query: 192 INNLVIPKE-LHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFC-TLT----G 244
           +    IP       + L EL L   +  I  +         SL  L +G    L     G
Sbjct: 135 LTV--IPSGAFEYLSKLRELWL--RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 245 ALHGQGKLR 253
           A  G   L+
Sbjct: 191 AFEGLFNLK 199

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 26/169 (15%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGL---------------DTLSRLNNLKFLYLDYNHF 143
                +L+ +Y   +                           + S L +L  + L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 144 NNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG--------LDSLGNLEELDMSDNAINNL 195
              +   L  L  L++L++  NR I +  +K          D+   ++   M  N +   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 196 VIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
                L     L  L    + +     L++  +   L  L + +  +  
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRH---LEAFGTNVKLTDLKLDYNQIEE 609

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 18/155 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF-------NNSIFSSLGGL 154
                ++ L  N I            +  + +  + L  N               +    
Sbjct: 672 GINASTVTLSYNEIQKFPTE----LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L  + L  N+L    D     +L  L  +D+S N  ++   P +  N + L+   +  
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRH 785

Query: 215 -SDLHISQLLQ----SIASFTSLKYLSMGFCTLTG 244
             D   +++L+     I +  SL  L +G   +  
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 14/154 (9%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                  +++  Y+  NN+     +     L ++  L  L   +N        + G    
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASAS---LQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216
           L +L L  N++   I          +E L  S N +  +       +   +  +    S 
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF--SY 653

Query: 217 LHISQLLQSIAS------FTSLKYLSMGFCTLTG 244
             I    ++I+         +   +++ +  +  
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 13/146 (8%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            +L  L  + N +        L+       L  L LDYN               +  L  
Sbjct: 573 VKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAI----NNLVIPKELHNFTNLEELILDDSDLH 218
             N+L    +I    S+  +  +D S N I     N+    + +   N   + L  S   
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL--SYNE 684

Query: 219 ISQLLQSI-ASFTSLKYLSMGFCTLT 243
           I +    + A+ + +  + +    +T
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 19/156 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---------NSIFS 149
           ++  + L  + L        +     D L  L  L+ L +  N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLP----DFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE 209
                  ++   +  N L        L  +  L  LD      N +   +       L +
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH---NKVRHLEAFGTNVKLTD 599

Query: 210 LILDDSDLHISQLLQSIASFTS-LKYLSMGFCTLTG 244
           L LD +   I ++ +   +FT  ++ L      L  
Sbjct: 600 LKLDYN--QIEEIPEDFCAFTDQVEGLGFSHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 6/143 (4%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           ++  L L G    G V +     + +L  LK L    +    S         +       
Sbjct: 324 RVTGLSLAGFGAKGRVPDA----IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAI--NNLVIPKELHNFTNLEELILDDSDLHISQ 221
            +R+        LD    L   D+  +AI  N  + P +  +  +L++  + +    I+ 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 222 LLQSIASFTSLKYLSMGFCTLTG 244
           + ++I   T L+ +       T 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTY 462

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 20/174 (11%), Positives = 41/174 (23%), Gaps = 34/174 (19%)

Query: 96  ASLFTPFQQLESLYLIGNNIAG---CVENEGLDTLSRLN--------------------- 131
                   Q+E L    N +         + +  +  ++                     
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 132 --NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL------IGSIDIKGLDSLGNLE 183
             N   + L YN             S +  + L  N +                +   L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237
            +D+  N + +L           L  + +  S    S       + + LK   +
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDV--SYNCFSSFPTQPLNSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 21/174 (12%), Positives = 55/174 (31%), Gaps = 29/174 (16%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
                Q+L    L+ + I    E + +   SR++       +  +    I  ++  L+ L
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450

Query: 158 RNLSLIGNRLIGSID------------------IKGLDSLGNLEELDMSDNAINNL-VIP 198
           + +    +                              +L +L ++++ +    N+  +P
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC--PNMTQLP 508

Query: 199 KELHNFTNLEELIL--------DDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
             L++   L+ L +               ++L     +   ++   MG+  L  
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 9/125 (7%)

Query: 99  FTPFQQLESLYLIGNNIAG---CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            T    L ++ +  N  +       N     L           + N       + +    
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLN--SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           SL  L +  N +   +D K       L  LD++DN   ++ +            ++L D 
Sbjct: 807 SLIQLQIGSNDI-RKVDEKLTP---QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

Query: 216 DLHIS 220
              I 
Sbjct: 863 TQDIR 867

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 37/160 (23%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L +L L  N +   + N        L+ LK L+L  N   +    +   + SLR
Sbjct: 108 FNGLANLNTLELFDNRLTT-IPN---GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL- 217
            L L   + +  I     + L NL  L+++   +    IP  L     L+EL L  + L 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLS 220

Query: 218 HISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 253
            I     S      L+ L M    +      A      L 
Sbjct: 221 AIRP--GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 8/120 (6%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L  L L   N+        +  L+ L  L  L L  NH +     S  GL  L+
Sbjct: 181 FEGLSNLRYLNLAMCNLRE------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L +I ++ I  I+    D+L +L E++++ N +  L          +LE + L  +  +
Sbjct: 235 KLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 16/164 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            + F   + LE L L  N+I   +E       + L NL  L L  N        +   LS
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRT-IEI---GAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKE-LHNFTNLEELILD 213
            L+ L L  N  I SI     + + +L  LD+ +     L  I +      +NL  L L 
Sbjct: 137 KLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLA 193

Query: 214 DSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 253
             +L     + ++     L  L +    L+    G+  G   L+
Sbjct: 194 MCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           N + L L  N       +S   L  L  L L  N  I +I+I   + L NL  L++ DN 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR 123

Query: 192 INNLVIPKE-LHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFC-TLT----G 244
           +    IP       + L+EL L   +  I  +         SL+ L +G    L+    G
Sbjct: 124 LTT--IPNGAFVYLSKLKELWL--RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 245 ALHGQGKLR 253
           A  G   LR
Sbjct: 180 AFEGLSNLR 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 17/145 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L+L GN +        +  L+ L NL +L+LD N   +   SSL  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           +LSL  N +    DI GL  L  LE L + +N I ++     L   T L+ L L+D+ + 
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS 169

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT 243
               +  +A  T L+ L +    ++
Sbjct: 170 D---IVPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 27/158 (17%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLN----------------NLKFLYLDYNHFNN 145
           F +     L   ++   V    L+++ ++                 N+  L+L+ N   +
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 82

Query: 146 SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT 205
                L  L +L  L L  N++    D+  L  L  L+ L +  N I+++     L +  
Sbjct: 83  --IKPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLP 134

Query: 206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
            LE L L   +  I+  +  ++  T L  LS+    ++
Sbjct: 135 QLESLYL--GNNKITD-ITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L+SL L  N I        ++ L  L  L+ LYL  N   +   + L  L+ L  LSL 
Sbjct: 113 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 164

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
            N++    DI  L  L  L+ L +S N I++L   + L    NL+ L L  
Sbjct: 165 DNQIS---DIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE 183
           + +           L      +    +   L+S+  +    + +     ++G+  L N+ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 71

Query: 184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           +L ++ N + ++   K L N  NL  L LD++   +   L S+     LK LS+    ++
Sbjct: 72  KLFLNGNKLTDI---KPLANLKNLGWLFLDEN--KVKD-LSSLKDLKKLKSLSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L++LYL  N+I        L  L+ L NL  L L      N   +    L     + 
Sbjct: 177 LTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
                L   +  + +   G+ E+ ++  +   
Sbjct: 231 NTDGSL---VTPEIISDDGDYEKPNVKWHLPE 259

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 8/160 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 LE L L  N ++   +     +     +LK+L L +N    ++ S+  GL  L 
Sbjct: 343 EVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           +L    + L    +     SL NL  LD+S             +  ++LE L +  +   
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQ 458

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 254
            + L        +L +L +  C L      A +    L+V
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            +  F  F +L+ L L    I   +E+        L++L  L L  N   +    +  GL
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQT-IED---GAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
           SSL+ L  +   L  S++   +  L  L+EL+++ N I +  +P+   N TNLE L L  
Sbjct: 100 SSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL-- 156

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTL 242
           S   I  +  +      L  + +   +L
Sbjct: 157 SSNKIQSIYCT--DLRVLHQMPLLNLSL 182

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
               ++L L  N +          +      L+ L L           +   LS L  L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L GN +  S+ +     L +L++L   +  + +L     + +   L+EL +  + +   +
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 222 LLQSIASFTSLKYLSMGFCTLT 243
           L +  ++ T+L++L +    + 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 5/142 (3%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           S F   +QLE L    +N+    E         L NL +L + + H   +      GLSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216
           L  L + GN    +        L NL  LD+S   +  L  P   ++ ++L+ L +  + 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMASNQ 505

Query: 217 LHISQLLQSIASFTSLKYLSMG 238
           L            TSL+ + + 
Sbjct: 506 LKSVP-DGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGG 153
             S+F   + L  L +   +             + L++L+ L +  N F  +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD 213
           L +L  L L   + +  +     +SL +L+ L+M+ N + ++         T+L+++ L 
Sbjct: 469 LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLH 526

Query: 214 D 214
            
Sbjct: 527 T 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           +     L +L L GN I    ++  L   S L++L+ L     +  +     +G L +L+
Sbjct: 72  YQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI--LDDSD 216
            L++  N +      +   +L NLE LD+S N I ++    +L     +  L   LD S 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSL 186

Query: 217 LHISQLLQSIASFTSLKYLSMGFCTLTGAL 246
             ++ +         L  L++     +  +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 19/209 (9%)

Query: 38  LRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTG--RVIKLDLRDTRNWESAEWYMN 95
           ++        L+   +    + +    E+ + +   G   +   + R        +  ++
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             LF     + S  L+   I      E +   S     + L L    F          L 
Sbjct: 277 --LFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVNCKFGQFPTLK---LK 325

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDD 214
           SL+ L+   N+     +      L +LE LD+S N ++      +     T+L+ L L  
Sbjct: 326 SLKRLTFTSNKG---GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL-- 380

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           S   +  +  +      L++L      L 
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG 152
           +    F+    L+ L  +  N+     +     +  L  LK L + +N   +  +     
Sbjct: 91  LALGAFSGLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE----ELDMSDNAINNLVIPKELHNFTNLE 208
            L++L +L L  N+ I SI    L  L  +      LD+S N +N   I         L 
Sbjct: 147 NLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLH 203

Query: 209 ELILDDSDLHISQLLQSIASFTSLKYLS 236
           +L L ++   ++ +   I     L+   
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +F     LE L + GN+          D  + L NL FL L          ++   L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           SSL+ L++  N+L  S+     D L +L+++ +  N
Sbjct: 494 SSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 11/148 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
                  + L+ L +  N I         +  S L NL+ L L  N   +   + L  L 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 156 SLRN----LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
            +      L L  N  +  I       +  L +L + +N  +  V+   +     LE   
Sbjct: 174 QMPLLNLSLDLSLNP-MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 212 LDDSDLHISQLLQSI--ASFTSLKYLSM 237
           L   +      L+    ++   L  L++
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTI 259

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 12/137 (8%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L  L L  N  +  V    +  L+ L   + +  ++ +  N        L  L NL++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 164 GNRL-----IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
             RL          I   + L N+    +    I  +   K+       + L L   +  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLEL--VNCK 315

Query: 219 ISQLLQSIASFTSLKYL 235
             Q         SLK L
Sbjct: 316 FGQF--PTLKLKSLKRL 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +FT  + L  L L    +   +        + L++L+ L +  N   +        L+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLE-QLSP---TAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 156 SLRNLSLIGNRLIGS 170
           SL+ + L  N    S
Sbjct: 519 SLQKIWLHTNPWDCS 533

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 16/148 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+   PF +LE L L  N +           L  L+ L+ L L+ N+        L    
Sbjct: 51  AADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGP 99

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           S+  L    N  I  +           + + +++N I  L    +    + ++ L L  +
Sbjct: 100 SIETLHAANNN-ISRVS---CSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLN 154

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLT 243
           ++      +  AS  +L++L++ +  + 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 17/148 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           ASL      ++ L L GN +           L+    L+ L L  N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           +LR L L  N       ++ L    ++E L  ++N I+ +            + + L ++
Sbjct: 81  TLRTLDLNNNY------VQELLVGPSIETLHAANNNISRV----SCSRGQGKKNIYLANN 130

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLT 243
            + + + L      + ++YL +    + 
Sbjct: 131 KITMLRDL-DEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
            N  K   +  +    ++ S      +++ L L GN  +  I    L     LE L++S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 190 NAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           N +       +L + + L  L L+++       +Q +    S++ L      ++
Sbjct: 68  NVLYET---LDLESLSTLRTLDLNNN------YVQELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 17/141 (12%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            + +   +  +++   + +          N+K L L  N  +    + L   + L  L+L
Sbjct: 10  NRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL 222
             N L    +   L+SL  L  LD+++N +      +EL    ++E L   ++  +IS++
Sbjct: 66  SSNVL---YETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANN--NISRV 114

Query: 223 LQSIASFTSLKYLSMGFCTLT 243
             S +     K + +    +T
Sbjct: 115 --SCSRGQGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 10/163 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            A L      LE L L  N I        +        LK L L  N     +       
Sbjct: 161 FAELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
           + +  +SL  N+L+  I+ K L    NLE  D+  N  +   +         ++ +    
Sbjct: 214 AGVTWISLRNNKLV-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA 257
               ++   +   +  +L +     C    A      + +   
Sbjct: 272 VK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 14/136 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L L  NN+           L     L  + L YN     ++     +  L  L 
Sbjct: 225 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           +  NR + +++      +  L+ LD+S N + +  + +    F  LE L LD +   I  
Sbjct: 279 ISNNR-LVALN-LYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHN--SIVT 332

Query: 222 LLQSIASFTSLKYLSM 237
           L   +++  +LK L++
Sbjct: 333 L--KLSTHHTLKNLTL 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 19/157 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLS------------RLNNLKFLYLDYNHFNNS 146
            +    L    +  N ++       ++ L                 L  L L +N+  + 
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD- 240

Query: 147 IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206
             + L     L  + L  N  +  I       +  LE L +S+N +    +         
Sbjct: 241 -TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPT 296

Query: 207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           L+ L L  S  H+  + ++   F  L+ L +   ++ 
Sbjct: 297 LKVLDL--SHNHLLHVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +   F     ++ LY+  N I   +          +  L  L L+ N  ++         
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRY-LPP---HVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L  LS+  N  +  I+     +  +L+ L +S N + ++    +L    +L    +  
Sbjct: 141 PKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSY 195

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           +      LL ++A   +++ L     ++ 
Sbjct: 196 N------LLSTLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 12/149 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+L   F+Q+E L L    I            +  + ++ LY+ +N            + 
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDD 214
            L  L L  N  + S+      +   L  L MS+N +    I  +     T+L+ L L  
Sbjct: 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQL-- 172

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           S   ++ +   ++   SL + ++ +  L+
Sbjct: 173 SSNRLTHV--DLSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 9/146 (6%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                  + +    + +           L     ++ L L+          +     +++
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L +  N  I  +      ++  L  L +  N +++L      HN   L  L + ++  +
Sbjct: 97  KLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNN--N 152

Query: 219 ISQLLQSI-ASFTSLKYLSMGFCTLT 243
           + ++      + TSL+ L +    LT
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
            LNN K +    +       + L     +  L+L   + I  ID         +++L M 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMG 101

Query: 189 DNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT---- 243
            NAI  L  P    N   L  L+L      +S L + I  +   L  LSM    L     
Sbjct: 102 FNAIRYLP-PHVFQNVPLLTVLVL--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 244 GALHGQGKLRV 254
                   L+ 
Sbjct: 159 DTFQATTSLQN 169

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              F   Q+LE LY+  N +        L+     +  LK L L +NH    +  +    
Sbjct: 265 YHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQF 317

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L NL L  N  I ++ +    +   L+ L +S N  +   +      F N+    +DD
Sbjct: 318 DRLENLYLDHNS-IVTLKL---STHHTLKNLTLSHNDWDCNSL---RALFRNVARPAVDD 370

Query: 215 SDLHISQLLQ 224
           +D H     Q
Sbjct: 371 ADQHCKIDYQ 380

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 22/143 (15%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     L++L L  N +           LS + +L    + YN       S+L    
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLL-----STLAIPI 205

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           ++  L    N  I  +          L  L +  N + +      L N+  L E+ L  S
Sbjct: 206 AVEELDASHNS-INVVRG---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDL--S 256

Query: 216 DLHISQLLQSI-ASFTSLKYLSM 237
              + +++         L+ L +
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYI 279

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 9/135 (6%)

Query: 125 DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184
             L        +++D    +         L++ + ++   +  +  +    LDS   +E 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVEL 73

Query: 185 LDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT 243
           L+++D  I  +           +++L +  +   I  L   +  +   L  L +    L+
Sbjct: 74  LNLNDLQIEEID-TYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 244 ----GALHGQGKLRV 254
               G  H   KL  
Sbjct: 131 SLPRGIFHNTPKLTT 145

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 5/142 (3%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              ++SL L  N I       G   L    NL+ L L  +  N     +   L SL +L 
Sbjct: 25  TAAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  N L  S+       L +L+ L++  N    L +     N TNL+ L + + +     
Sbjct: 81  LSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 222 LLQSIASFTSLKYLSMGFCTLT 243
                A  TSL  L +   +L 
Sbjct: 140 RRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 14/156 (8%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF--- 148
           +Y  +++++  ++++ + +  + +   V          L +L+FL L  N          
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKV-FLVPC---SFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 149 SSLGGLSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNL 207
           +  G   SL+ L L  N L       + L +L NL  LD+S N  +   +P        +
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSCQWPEKM 412

Query: 208 EELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
             L L  S   I  +   I    +L+ L +    L 
Sbjct: 413 RFLNL--SSTGIRVVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            + +   ++E++ +   +I        L    S L  +K + ++ +       S    L 
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334

Query: 156 SLRNLSLIGNRL--IGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELIL 212
           SL  L L  N +      +     +  +L+ L +S N + ++    + L    NL  L +
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 213 DDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
             +      +  S      +++L++    + 
Sbjct: 395 SRN--TFHPMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 9/156 (5%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
              SLF     L++L +        +        + L +L  L +      N    SL  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-----VIPKELHNFTNLE 208
           +  + +L+L  +     +     D L ++  L++ D  +         + +       L 
Sbjct: 171 IRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
                 +D   ++LL+ +     L  +    CTL G
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L+ L L  + I         D    L +L+ L L  NH ++   S  G LSSL+
Sbjct: 46  LRACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L+L+GN            +L NL+ L + +    + +   +    T+L EL +    L 
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI--KALS 159

Query: 219 ISQL-LQSIASFTSLKYLSMGFCTLT 243
           +     QS+ S   + +L++      
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLG 152
           +++S F P   L+ L L+GN                L NL+ L +      + I      
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQ---TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
           GL+SL  L +     + +   + L S+ ++  L +  +    L +       +++  L L
Sbjct: 146 GLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLEL 203

Query: 213 DDSDL 217
            D++L
Sbjct: 204 RDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 14/153 (9%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN--SIFSS 150
            +  S     + LE L L  N +                +L+ L L  NH  +       
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC-KGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210
           L  L +L +L +  N     +          +  L++S   I  +    +      LE L
Sbjct: 383 LLTLKNLTSLDISRNT-FHPMP-DSCQWPEKMRFLNLSSTGIRVV----KTCIPQTLEVL 436

Query: 211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
                D+  + L         L+ L +    L 
Sbjct: 437 -----DVSNNNLDSFSLFLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 19/144 (13%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +    + L SL +  N       +   D+      ++FL L        + +      
Sbjct: 380 GEILLTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQ 431

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           +L  L +  N L  S  +     L  L+EL +S N +  L    +   F  L  + +  S
Sbjct: 432 TLEVLDVSNNNL-DSFSL----FLPRLQELYISRNKLKTL---PDASLFPVLLVMKI--S 481

Query: 216 DLHISQLLQSI-ASFTSLKYLSMG 238
              +  +   I    TSL+ + + 
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
            Q LE L +  NN+              L  L+ LY+  N               L  + 
Sbjct: 430 PQTLEVLDVSNNNLD--------SFSLFLPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           +  N+ + S+     D L +L+++ +  N
Sbjct: 480 ISRNQ-LKSVPDGIFDRLTSLQKIWLHTN 507

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
           F  L+ L+L  N I        L  L  L  L+ L ++ N   N   + +     L  L 
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLF 112

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  N L    D   L  L NLE L + +N + ++     L   + LE L L      I+ 
Sbjct: 113 LDNNELR---DTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDL--HGNEITN 164

Query: 222 LLQSIASFTSLKYLSMGFCTLT 243
               +     + ++ +      
Sbjct: 165 -TGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
                   L   ++        L +   L+ ++    D ++  +   + +   ++L+ L 
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  N++    D+  L  L  LEEL ++ N + NL           L  L LD+++L    
Sbjct: 70  LSHNQI---SDLSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNELRD-- 120

Query: 222 LLQSIASFTSLKYLSMGFCTLT 243
              S+    +L+ LS+    L 
Sbjct: 121 -TDSLIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.6 bits (137), Expect = 9e-10
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L  L+L  N +         D+L  L NL+ L +  N   +     LG LS L  L L 
Sbjct: 107 CLSRLFLDNNEL------RDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLH 158

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL 222
           GN +    +  GL  L  +  +D++     N  +  +   +        D   +    +
Sbjct: 159 GNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYI 214

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 144 NNSI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL 201
              I       GL++    +L    +    D+     L  ++  +  ++ I +L     +
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQSL---AGM 59

Query: 202 HNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
             FTNL+EL L  S   IS  L  +   T L+ LS+    L 
Sbjct: 60  QFFTNLKELHL--SHNQISD-LSPLKDLTKLEELSVNRNRLK 98

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +   L L  N I    +    D  +   +L+ L L+ N  +     +   L +LR L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           L  NR +  I +     L NL +LD+S+N I  L +     +  NL+ L + D+   +  
Sbjct: 87  LRSNR-LKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDN--DLVY 142

Query: 222 L-LQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 254
           +  ++ +   SL+ L++  C LT     AL     L V
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 13/163 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +F     L+SL +  N++   + +      S LN+L+ L L+  +  +    +L  L 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
            L  L L     I +I       L  L+ L++S     + + P  L+   NL  L +   
Sbjct: 177 GLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHC 234

Query: 216 DL-HISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 253
           +L  +     ++     L++L++ +  ++      LH   +L+
Sbjct: 235 NLTAVPY--LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 9/144 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F    +L+ L +        +    L  L    NL  L + + +     + ++  L 
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL----NLTSLSITHCNLTAVPYLAVRHLV 248

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
            LR L+L  N  I +I+   L  L  L+E+ +    +  +  P        L  L +  +
Sbjct: 249 YLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGN 306

Query: 216 DL-HISQLLQSIASFTSLKYLSMG 238
            L  + +      S  +L+ L + 
Sbjct: 307 QLTTLEE--SVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 13/164 (7%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N   F  F  LE L L  N ++  VE       + L NL+ L L  N           GL
Sbjct: 48  NQDEFASFPHLEELELNENIVSA-VEP---GAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
           S+L  L +  N+ I  +       L NL+ L++ DN +  +   +      +LE+L L+ 
Sbjct: 104 SNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEK 161

Query: 215 SDL-HISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLR 253
            +L  I    ++++    L  L +    +      +     +L+
Sbjct: 162 CNLTSIPT--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 15/162 (9%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F+    LE L L   N+           LS L+ L  L L + + N     S   L  L+
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTE----ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDDSDL 217
            L +     + ++    L  L NL  L ++   +    +P   + +   L  L L  +  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYN-- 258

Query: 218 HISQLLQSI-ASFTSLKYLSMGFCTLT----GALHGQGKLRV 254
            IS +  S+      L+ + +    L      A  G   LRV
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            S+     +L+ + L+G  +A  VE         LN L+ L +  N       S    + 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA-VVEP---YAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 156 SLRNLSLIGNRLI 168
           +L  L L  N L 
Sbjct: 321 NLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 5e-13
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 14/136 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L L  NN+           L     L  + L YN     ++     +  L  L 
Sbjct: 231 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
           +  NR + +++      +  L+ LD+S N + +  + +    F  LE L LD +   I  
Sbjct: 285 ISNNR-LVALN-LYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHN--SIVT 338

Query: 222 LLQSIASFTSLKYLSM 237
           L   +++  +LK L++
Sbjct: 339 L--KLSTHHTLKNLTL 352

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.6 bits (157), Expect = 5e-12
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 19/157 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTL------------SRLNNLKFLYLDYNHFNNS 146
            +    L    +  N ++       ++ L                 L  L L +N+  + 
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD- 246

Query: 147 IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN 206
             + L     L  + L  N  +  I       +  LE L +S+N +    +         
Sbjct: 247 -TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPT 302

Query: 207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           L+ L L  S  H+  + ++   F  L+ L +   ++ 
Sbjct: 303 LKVLDL--SHNHLLHVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 6e-12
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 10/148 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+L   F+Q+E L L    I            +  + ++ LY+ +N            + 
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
            L  L L  N  + S+      +   L  L MS+N +  +         T+L+ L L  S
Sbjct: 124 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQL--S 179

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLT 243
              ++ +   ++   SL + ++ +  L+
Sbjct: 180 SNRLTHV--DLSLIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 15/148 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     ++ LY+  N I   +          +  L  L L+ N  ++          
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRY-LPP---HVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
            L  LS+  N  +  I+     +  +L+ L +S N + ++    +L    +L    +   
Sbjct: 148 KLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSY- 201

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLT 243
                 LL ++A   +++ L     ++ 
Sbjct: 202 -----NLLSTLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           + +    +  L  + L  N +    E        ++  L+ LY+  N    ++      +
Sbjct: 246 DTAWLLNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPI 300

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
            +L+ L L  N L+  ++ +       LE L +  N+I  L    +L     L+ L L  
Sbjct: 301 PTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSH 354

Query: 215 SDLHISQLLQSIASFTSLKYL 235
           +D   + L     +       
Sbjct: 355 NDWDCNSLRALFRNVARPAVD 375

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 9/146 (6%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                  + +    + +           L     ++ L L+          +     +++
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L +  N  I  +      ++  L  L +  N +++L      HN   L  L +  S+ +
Sbjct: 103 KLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSM--SNNN 158

Query: 219 ISQLLQSI-ASFTSLKYLSMGFCTLT 243
           + ++      + TSL+ L +    LT
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
            LNN K +    +       + L     +  L+L   + I  ID         +++L M 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMG 107

Query: 189 DNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT---- 243
            NAI  L  P    N   L  L+L      +S L + I  +   L  LSM    L     
Sbjct: 108 FNAIRYLP-PHVFQNVPLLTVLVL--ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 244 GALHGQGKLRV 254
                   L+ 
Sbjct: 165 DTFQATTSLQN 175

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 15/142 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              F   Q+LE LY+  N +        L+     +  LK L L +NH    +  +    
Sbjct: 271 YHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQF 323

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             L NL L  N  I ++ +    +   L+ L +S N  +   +      F N+    +DD
Sbjct: 324 DRLENLYLDHNS-IVTLKL---STHHTLKNLTLSHNDWDCNSL---RALFRNVARPAVDD 376

Query: 215 SDLHISQLLQSIASFTSLKYLS 236
           +D H     Q        +   
Sbjct: 377 ADQHCKIDYQLEHGLCCKESDK 398

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 9/135 (6%)

Query: 125 DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE 184
             L        +++D    +         L++ + ++   +  +  +    LDS   +E 
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVEL 79

Query: 185 LDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT 243
           L+++D  I  +           +++L +  +   I  L   +  +   L  L +    L+
Sbjct: 80  LNLNDLQIEEID-TYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 244 ----GALHGQGKLRV 254
               G  H   KL  
Sbjct: 137 SLPRGIFHNTPKLTT 151

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 8e-13
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
            +  +  L+L   ++        L  L +L  +  L L +N    ++  +L  L  L  L
Sbjct: 439 EYADVRVLHLAHKDL------TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
               N L    ++ G+ +L  L+EL + +N +      + L +   L  L L  
Sbjct: 492 QASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL 185
                 +++ L+L +     ++   L  L  + +L L  NRL  ++    L +L  LE L
Sbjct: 436 LKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVL 491

Query: 186 DMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLS 236
             SDNA+ N+     + N   L+EL+L ++ L  S  +Q + S   L  L+
Sbjct: 492 QASDNALENV---DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 5e-08
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              +  L L  N +           L+ L  L+ L    N   N     +  L  L+ L 
Sbjct: 462 LLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAI 192
           L  NRL  S  I+ L S   L  L++  N++
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 16/148 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+   PF +LE L L  N +           L  L+ L+ L L+ N+        L    
Sbjct: 51  AADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGP 99

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           S+  L    N  I  +           + + +++N I  L    +    + ++ L L  +
Sbjct: 100 SIETLHAANNN-ISRVS---CSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLN 154

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLT 243
           ++      +  AS  +L++L++ +  + 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +++ L L  N I         +  +  + L+ L L YN             + L+
Sbjct: 140 EGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L L  N+ +  +      S   +  + + +N +    I K L    NLE   L  +  H
Sbjct: 195 TLDLSSNK-LAFMG-PEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250

Query: 219 ISQLLQSIASFTSLKYLS 236
              L    +    ++ ++
Sbjct: 251 CGTLRDFFSKNQRVQTVA 268

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 9e-12
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 16/145 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L +L L  N +           L    +++ L+   N+ +     S       +
Sbjct: 76  LESLSTLRTLDLNNNYVQ---------ELLVGPSIETLHAANNNISRV---SCSRGQGKK 123

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           N+ L  N+ I  +          ++ LD+  N I+ +   +   +   LE L L  + ++
Sbjct: 124 NIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT 243
               ++    F  LK L +    L 
Sbjct: 183 D---VKGQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 17/141 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           ASL      ++ L L GN ++          L+    L+ L L  N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           +LR L L  N       ++ L    ++E L  ++N I+ +            + + L ++
Sbjct: 81  TLRTLDLNNNY------VQELLVGPSIETLHAANNNISRV----SCSRGQGKKNIYLANN 130

Query: 216 DLHISQLLQSIASFTSLKYLS 236
            + + + L      + ++YL 
Sbjct: 131 KITMLRDL-DEGCRSRVQYLD 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
            N  K   +  +    ++ S      +++ L L GN  +  I    L     LE L++S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 190 NAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           N +       +L + + L  L L+++       +Q +    S++ L      ++
Sbjct: 68  NVLYET---LDLESLSTLRTLDLNNN------YVQELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            + +   +  +++   + +          N+K L L  N  +    + L   + L  L+L
Sbjct: 10  NRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL 222
             N L  ++D++    L  L  LD+++N +      +EL    ++E L   ++  +IS++
Sbjct: 66  SSNVLYETLDLES---LSTLRTLDLNNNYV------QELLVGPSIETLHAANN--NISRV 114

Query: 223 LQSIASFTSLKYLSMGFCTLT 243
             S +     K + +    +T
Sbjct: 115 --SCSRGQGKKNIYLANNKIT 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 19/169 (11%), Positives = 40/169 (23%), Gaps = 32/169 (18%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
             F +L++L L  N +        +         + ++ L  N     I  +L    +L 
Sbjct: 188 VVFAKLKTLDLSSNKL------AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 159 NLSLIGNRL----------------------IGSIDIKGLDSLGNLEELDMSDNAINNLV 196
           +  L GN                        +  +  +  +                +L 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 197 IP--KELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
            P    L      E  +L        +L     +    + +        
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS-SLRNL 160
            +  + L L  NNI   + +     LS + NL+ L L  N        +L  ++ +L  L
Sbjct: 47  LKACKHLALSTNNIE-KISS-----LSGMENLRILSLGRNLI--KKIENLDAVADTLEEL 98

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
            +  N++     + G++ L NL  L MS+N I N     +L     LE+L+L  
Sbjct: 99  WISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+ FT    LE L L  N     V+     T   L  L  L+LD             GL+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           +L+ L L  N  + ++       LGNL  L +  N I+++   +      +L+ L+L  +
Sbjct: 130 ALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQN 187

Query: 216 DLH 218
            + 
Sbjct: 188 RVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            + ++L GN I+    +    +     NL  L+L  N       ++  GL+ L  L L  
Sbjct: 34  SQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDDSDL-HISQL 222
           N  + S+D      LG L  L +    +    +          L+ L L D+ L  +   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPD- 146

Query: 223 LQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 254
             +     +L +L +    ++     A  G   L  
Sbjct: 147 -DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             LF     L+ LYL  N +   + +   DT   L NL  L+L  N  ++    +  GL 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQA-LPD---DTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDD 214
           SL  L L  NR +  +       LG L  L +  N ++   +P E L     L+ L L+D
Sbjct: 178 SLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSA--LPTEALAPLRALQYLRLND 234

Query: 215 SDLH 218
           +   
Sbjct: 235 NPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 16/165 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGL 154
           A+ F   + L  L+L  N +A  ++       + L  L+ L L  N    S+  ++  GL
Sbjct: 49  AASFRACRNLTILWLHSNVLA-RIDA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILD 213
             L  L L     +  +       L  L+ L + DNA+    +P +   +  NL  L L 
Sbjct: 105 GRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLH 161

Query: 214 DSDLHISQLLQSI-ASFTSLKYLSMGFCTLT----GALHGQGKLR 253
            +   IS + +       SL  L +    +      A    G+L 
Sbjct: 162 GN--RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
             + ++L  N  ++   +S     +L  L L  N  +  ID      L  LE+LD+SDNA
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT----GAL 246
               V P   H    L  L LD     + +L   +     +L+YL +    L        
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRC--GLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 247 HGQGKLR 253
              G L 
Sbjct: 150 RDLGNLT 156

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL--G 152
               F   + L +L LI N I+  +        + L  L+ LYL  N         L   
Sbjct: 68  KDGDFKNLKNLHTLILINNKISK-ISP---GAFAPLVKLERLYLSKNQ-----LKELPEK 118

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELI 211
              +L+ L +  N  I  +     + L  +  +++  N + +  I          L  + 
Sbjct: 119 MPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 212 LDDSDLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 254
           + D+  +I+ + Q +    SL  L +    +T     +L G   L  
Sbjct: 178 IADT--NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAK 220

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 19/160 (11%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--LGGLSSLRN 159
            + L+ L +  N I   V        + LN +  + L  N   +S   +    G+  L  
Sbjct: 120 PKTLQELRVHENEIT-KVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 160 LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDDSDL- 217
           + +     I +I         +L EL +  N I    +    L    NL +L L  + + 
Sbjct: 176 IRIADTN-ITTIP---QGLPPSLTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSIS 229

Query: 218 HISQLLQSIASFTSLKYLSMGFCTLT---GALHGQGKLRV 254
            +     S+A+   L+ L +    L    G L     ++V
Sbjct: 230 AVDN--GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+       L  L L  N+I+  V+N    +L+   +L+ L+L+ N     +   L    
Sbjct: 209 AASLKGLNNLAKLGLSFNSIS-AVDN---GSLANTPHLRELHLNNNKLV-KVPGGLADHK 263

Query: 156 SLRNLSLIGNRL--IGS---IDIKGLDSLGNLEELDMSDNAINNLVIPKEL-HNFTNLEE 209
            ++ + L  N +  IGS             +   + +  N +    I             
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 210 LILDD 214
           + L +
Sbjct: 324 VQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 27/166 (16%)

Query: 96  ASLFTPFQQLESLYLIGNNI-AGCVEN---EGLDTLSRLN---------------NLKFL 136
            S+F    Q+  + L  N + +  +EN   +G+  LS +                +L  L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197

Query: 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV 196
           +LD N       +SL GL++L  L L  N  I ++D   L +  +L EL +++N +    
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVK-- 254

Query: 197 IPKELHNFTNLEELILDD---SDLHISQLLQSIA--SFTSLKYLSM 237
           +P  L +   ++ + L +   S +  +            S   +S+
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 14/130 (10%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           +   L L  N            L +L  L LI N+ I  I       L  LE L +S N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ 111

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMGFCTLT------G 244
           +    +P+++     L+EL + ++   I+++ +S+      +  + +G   L       G
Sbjct: 112 LKE--LPEKM--PKTLQELRVHEN--EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 245 ALHGQGKLRV 254
           A  G  KL  
Sbjct: 166 AFQGMKKLSY 175

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F   Q L +L L+ N I+  +        S L  L+ LY+  NH    I  +L   S
Sbjct: 71  KDDFKGLQHLYALVLVNNKISK-IHE---KAFSPLRKLQKLYISKNHLV-EIPPNL--PS 123

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           SL  L +  NR I  +       L N+  ++M  N + N         F  L+   L  S
Sbjct: 124 SLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA--FDGLKLNYLRIS 180

Query: 216 DLHISQLLQSIASFTSLKYLSMGFCTLT----GALHGQGKLRV 254
           +  ++ + + +    +L  L +    +       L    KL  
Sbjct: 181 EAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYR 221

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 21/137 (15%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEG------LDTLSRLNN------------LKFLY 137
             +F+  + +  + + GN +       G      L+ L                 L  L+
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVI 197
           LD+N         L   S L  L L  N+ I  I+   L  L  L EL + +N ++   +
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSR--V 256

Query: 198 PKELHNFTNLEELILDD 214
           P  L +   L+ + L  
Sbjct: 257 PAGLPDLKLLQVVYLHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
                 + +L  L L  N I   +EN    +LS L  L+ L+LD N  +  + + L  L 
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIR-MIEN---GSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 156 SLRNLSLIGNRL--IGSIDIKGL---DSLGNLEELDMSDNAINNLVIPKEL-HNFTNLEE 209
            L+ + L  N +  +G  D   +           + + +N +    +        T+   
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 210 LILD 213
           +   
Sbjct: 325 IQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           +   L L  N  +        GL  L  L L+ N+ I  I  K    L  L++L +S N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH 113

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSMG 238
           +    IP  L   ++L EL + D+   I ++ + + +   ++  + MG
Sbjct: 114 LVE--IPPNL--PSSLVELRIHDN--RIRKVPKGVFSGLRNMNCIEMG 155

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 32/154 (20%)

Query: 105 LESLYLIGNNIAGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
             +L L    +          D   RL++L+ + +D       +  ++   + L  L+L 
Sbjct: 83  RVALELRSVPL------PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLA 135

Query: 164 GNRL------IGSIDIKGLDSLGNLEELDMSDN--------AINNLVIPKELHNFTNLEE 209
            N L      I S        L  L EL +            + +     E     NL+ 
Sbjct: 136 RNPLRALPASIAS--------LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           L L+ +   I  L  SIA+  +LK L +    L+
Sbjct: 188 LRLEWT--GIRSLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 105 LESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            E+LY  G+          L      L+  +  Y    +  +S        ++ +  +  
Sbjct: 14  RENLYFQGST--------ALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRT 64

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL 223
           G  L  + D+    +      L++    +     P +    ++L+ + +D + L   +L 
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGL--MELP 120

Query: 224 QSIASFTSLKYLSMGFCTLT 243
            ++  F  L+ L++    L 
Sbjct: 121 DTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 8e-09
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 33/155 (21%)

Query: 102 FQQLESLYLIGNNIAGCVENEGL-DTLSRLNNLKFLYLDYNH---------FNNSIFSSL 151
           F  LE+L L  N +        L  +++ LN L+ L +              +       
Sbjct: 126 FAGLETLTLARNPL------RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 152 GGLSSLRNLSLIGNRL------IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT 205
            GL +L++L L    +      I +        L NL+ L + ++ ++ L     +H+  
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIAN--------LQNLKSLKIRNSPLSAL--GPAIHHLP 229

Query: 206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC 240
            LEEL L      +            LK L +  C
Sbjct: 230 KLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%)

Query: 103 QQLESLYLIGNNIAGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
           Q L+SL +  + +        L   +  L  L+ L L       +     GG + L+ L 
Sbjct: 206 QNLKSLKIRNSPL------SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV-IPKELHNFTNLEELILDDSDL--H 218
           L     + ++    +  L  LE+LD+      NL  +P  +        +++        
Sbjct: 260 LKDCSNLLTLP-LDIHRLTQLEKLDLRGC--VNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 219 ISQLLQSIAS 228
                 +  +
Sbjct: 317 DQHRPVARPA 326

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 9/145 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGL 154
              F+    LE L L  N ++             L++L FL L  N +      S    L
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
           + L+ L +        I  K    L  LEEL++  + + +   PK L +  N+  LIL  
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLIL-- 205

Query: 215 SDLHISQLLQSI-ASFTSLKYLSMG 238
                  LL+      +S++ L + 
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELR 230

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
           ++SL L  N I           L R  NL+ L L  N  N     S   L SL +L L  
Sbjct: 54  VKSLDLSNNRI----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL-L 223
           N L  ++       L +L  L++  N    L       + T L+ L + + D   +++  
Sbjct: 110 NYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT-FTKIQR 167

Query: 224 QSIASFTSLKYLSMGFCTLT----GALHGQGKLR 253
           +  A  T L+ L +    L      +L     + 
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN--NLKFLYLDYNHFN---NSIFSS 150
                  Q +  L L        +    +D  S +    L+   LD  HF+       +S
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEE 209
           L    + RN+ +    L     +K L+ +  L EL+ S N + +  +P       T+L++
Sbjct: 250 LIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQK 305

Query: 210 LILDD 214
           + L  
Sbjct: 306 IWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
            F     LE L +  +++    E +   +L  + N+  L L        +   +   SS+
Sbjct: 169 DFAGLTFLEELEIDASDLQ-SYEPK---SLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 158 RNLSLIGNRL-------IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210
             L L    L       + + +   L        + ++D ++    + K L+  + L EL
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLEL 282

Query: 211 ILDDSDL 217
               + L
Sbjct: 283 EFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 28/189 (14%), Positives = 61/189 (32%), Gaps = 32/189 (16%)

Query: 96  ASLFTPFQQLESLYLIGNNIA-----------------GCVENEGL-----DTLSRLNNL 133
           +S F P   L  L L+GN                         +          + L  L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176

Query: 134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
           + L +D +   +    SL  + ++ +L L   +    +    +D   ++E L++ D  ++
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLD 235

Query: 194 NLVIPK----ELHNFTNLEEL-ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT----G 244
                +    E ++         +  +D  + Q+++ +   + L  L      L     G
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG 295

Query: 245 ALHGQGKLR 253
                  L+
Sbjct: 296 IFDRLTSLQ 304

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
            +K L L  N       S L    +L+ L L  N  I +I+     SLG+LE LD+S N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY 111

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL-----TGAL 246
           ++NL         ++L  L L  +           +  T L+ L +G             
Sbjct: 112 LSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 247 HGQGKLR 253
            G   L 
Sbjct: 171 AGLTFLE 177

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENE----GLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
                    +E L L   ++     +E      ++L +    + + +        +   L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
             +S L  L    N+L  S+     D L +L+++ +  N
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 15/150 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLGGLS 155
            T    L SL L  N++   + +   +    + NL++L L  NH    +  +FS    L 
Sbjct: 60  PTRLTNLHSLLLSHNHLNF-ISS---EAFVPVPNLRYLDLSSNHLHTLDEFLFS---DLQ 112

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL-ILDD 214
           +L  L L  N  I  +D    + +  L++L +S N I+     + + +   L +L +LD 
Sbjct: 113 ALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDL 170

Query: 215 SDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           S   + +L   +     L         L  
Sbjct: 171 SSNKLKKL--PLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 9/136 (6%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L L  NN++  +  E   T +RL NL  L L +NH N     +   + +LR L L  
Sbjct: 41  TALLDLSHNNLSR-LRAEW--TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDDSDLH--ISQ 221
           N L  ++D      L  LE L + +N I    + +    +   L++L L  + +     +
Sbjct: 98  NHL-HTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 222 LLQSIASFTSLKYLSM 237
           L++       L  L +
Sbjct: 155 LIKDGNKLPKLMLLDL 170

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 132 NLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
               L L +N+ +      +   L++L +L L  N  +  I  +    + NL  LD+S N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98

Query: 191 AINNLVIPKE-LHNFTNLEELILDDSDLHISQLLQSIASF-----TSLKYLSMGFCTLT- 243
            ++ L   +    +   LE L+L ++       +  +          L+ L +    ++ 
Sbjct: 99  HLHTL--DEFLFSDLQALEVLLLYNNH------IVVVDRNAFEDMAQLQKLYLSQNQISR 150

Query: 244 ---GALHGQGKLR 253
                +    KL 
Sbjct: 151 FPVELIKDGNKLP 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
             LF+  Q LE L L  N+I   V+    +    +  L+ LYL  N    F   +     
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVDR---NAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNL--EELDMSDNAIN 193
            L  L  L L  N+ +  + +  L  L       L + +N + 
Sbjct: 161 KLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            + F    QL+ LYL  N I+     E +   ++L  L  L L  N       + L  L 
Sbjct: 129 RNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 156 SL--RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--VIPKELHNFTNLEELI 211
           +     L L  N L     +  L S     +L    +   +L  +  K+LHN  +L+   
Sbjct: 188 AWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFN 247

Query: 212 LDD 214
             +
Sbjct: 248 CSE 250

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 19/152 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
           +  F  F +L+ L L    I   +E+        L++L  L L  N         FS   
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIED---GAYQSLSHLSTLILTGNPIQSLALGAFS--- 97

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
           GLSSL+ L  +    + S++   +  L  L+EL+++ N I +  +P+   N TNLE L  
Sbjct: 98  GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-- 154

Query: 213 DDSDLHISQLLQSI--ASFTSLKYLSMGFCTL 242
              DL  ++ +QSI       L  + +   +L
Sbjct: 155 ---DLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKF-LYLDYNHFN---NSIFSSL 151
              F+    LE L L  N I   +    L  L ++  L   L L  N  N      F  +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
                L+ L+L  N+L  S+     D L +L+++ +  N
Sbjct: 201 ----RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 20/147 (13%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            +   P+ +L  L L    +        L     L  L  L L +N    S+      L 
Sbjct: 48  LATLMPYTRLTQLNLDRAELTK------LQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLP 100

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS 215
           +L  L +  NR + S+ +  L  LG L+EL +  N +  L  P  L     LE+L     
Sbjct: 101 ALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKL----- 153

Query: 216 DLHISQLLQSI-----ASFTSLKYLSM 237
            L  +  L  +         +L  L +
Sbjct: 154 SLANNN-LTELPAGLLNGLENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 17/123 (13%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHFNN---SIFSSL 151
            L      L  L +  N +        L    L  L  L+ LYL  N        + +  
Sbjct: 94  LLGQTLPALTVLDVSFNRL------TSLPLGALRGLGELQELYLKGNELKTLPPGLLT-- 145

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
                L  LSL  N L   +    L+ L NL+ L + +N++    IPK       L    
Sbjct: 146 -PTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAF 201

Query: 212 LDD 214
           L  
Sbjct: 202 LHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           +   L+L  N       ++L   + L  L+L    L     ++   +L  L  LD+S N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQ 88

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-----ASFTSLKYLSMGFCTLT--- 243
           + +L  P        L  L     D+  ++ L S+          L+ L +    L    
Sbjct: 89  LQSL--PLLGQTLPALTVL-----DVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 244 -GALHGQGKLR 253
            G L    KL 
Sbjct: 141 PGLLTPTPKLE 151

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 33/155 (21%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
              + +L +  NN         L +L +    L+ L +  N    S+     GL  L   
Sbjct: 60  PAHITTLVIPDNN---------LTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIF 109

Query: 161 SLIGNRLIGSID-IKGLD-----------SLGNLEELDMSDNAINNLVIPKELHNFTNLE 208
           S     L      +  L                L+EL +SDN + +L  P          
Sbjct: 110 SNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL--PALPSELCK-- 165

Query: 209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
              L   +  ++ L       + L+ LS+    L 
Sbjct: 166 ---LWAYNNQLTSLPMLP---SGLQELSVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 102 FQQLESLYLIGNNIAG-CVENEGLDTLSRLNN-----------LKFLYLDYNHFNNSIFS 149
              L+ L +  N +A        L  L   NN           LK L +  N    S+  
Sbjct: 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPV 238

Query: 150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE 209
                  L+ L + GNRL  S+          L  L +  N +  L  P+ L + ++   
Sbjct: 239 LPS---ELKELMVSGNRLT-SLP----MLPSGLLSLSVYRNQLTRL--PESLIHLSSETT 288

Query: 210 LILDD 214
           + L+ 
Sbjct: 289 VNLEG 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 31/141 (21%), Positives = 47/141 (33%), Gaps = 27/141 (19%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
             L  L++ GN +        L  L     L+ L +  N       S     S L  L  
Sbjct: 121 SGLCKLWIFGNQL------TSLPVL--PPGLQELSVSDNQLA----SLPALPSELCKLWA 168

Query: 163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL 222
             N+L  S+          L+EL +SDN + +L  P        L        +  ++ L
Sbjct: 169 YNNQLT-SLP----MLPSGLQELSVSDNQLASL--PTLPSELYKLWAY-----NNRLTSL 216

Query: 223 LQSIASFTSLKYLSMGFCTLT 243
                  + LK L +    LT
Sbjct: 217 PALP---SGLKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 24/131 (18%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L+   N +        L  L   + L+ L +  N    S+ +       L  L 
Sbjct: 160 PSELCKLWAYNNQL------TSLPML--PSGLQELSVSDNQLA-SLPTLPS---ELYKLW 207

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ 221
              NRL  S+          L+EL +S N + +L  P      + L+EL++  S   ++ 
Sbjct: 208 AYNNRLT-SLP----ALPSGLKELIVSGNRLTSL--PVLP---SELKELMV--SGNRLTS 255

Query: 222 LLQSIASFTSL 232
           L    +   SL
Sbjct: 256 LPMLPSGLLSL 266

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 26/129 (20%)

Query: 129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMS 188
             N    L +  +    ++   L   + +  L +  N L  S+          L  L++S
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP----ALPPELRTLEVS 89

Query: 189 DNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSI--------------ASFTSLKY 234
            N + +L  P        L          H+  L   +                   L+ 
Sbjct: 90  GNQLTSL--PVLPPGLLELSIFSN--PLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQE 145

Query: 235 LSMGFCTLT 243
           LS+    L 
Sbjct: 146 LSVSDNQLA 154

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 28/155 (18%), Positives = 43/155 (27%), Gaps = 10/155 (6%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSS 150
            +      F  L +L L  N   G           +   L+ L L             + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL 210
                 L+ L L  N L  +      D    L  L++S   +  +  PK L     L  L
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV--PKGL--PAKLSVL 279

Query: 211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA 245
            L  + L       S      +  LS+       +
Sbjct: 280 DLSYNRL---DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 5/151 (3%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L      L  L L   + A                LK L +   H  N     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 158 RNLSLIGNRLIGSIDIKG---LDSLGNLEELDMSDNAINNL--VIPKELHNFTNLEELIL 212
             L L  N  +G   +           L+ L + +  +     V          L+ L L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 213 DDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
             + L  +    S    + L  L++ F  L 
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 3/135 (2%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            LE L    +  A   +   +     L  L                 + G+S L+ L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 164 GNRLIGSIDIKGLD-SLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDDSDLHISQ 221
              + G+     L+ +  +L  L++ + +         EL  +      +L  +  H   
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 222 L-LQSIASFTSLKYL 235
              + +  F +L  L
Sbjct: 164 FSCEQVRVFPALSTL 178

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 129 RLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDM 187
             +++K L LD +  N   +         L  LS I   L     I  L  L  L++L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL---TSIANLPKLNKLKKLEL 71

Query: 188 SDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237
           SDN ++   +        NL  L L  + +     ++ +    +LK L +
Sbjct: 72  SDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL- 160
              ++ L L  +           D       L+FL       N  + +S+  L  L  L 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFE---ELEFLSTI----NVGL-TSIANLPKLNKLK 67

Query: 161 --SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
              L  NR +        +   NL  L++S N I +L   + L    NL+ L L +
Sbjct: 68  KLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L   F++LE L  I   +        +  L +LN LK L L  N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAI 192
            +L+L GN++     I+ L  L NL+ LD+ +  +
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L   F  LE L LI   +        +  L +L  LK L L  N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
            +L+L GN+L     ++ L  L  L+ LD+ +  + NL
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              +  L L         + +     +   NL+FL L          S+L  L  L+ L 
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLE 77

Query: 162 LIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
           L  NR I        + L NL  L++S N + ++   + L     L+ L L +
Sbjct: 78  LSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 4e-09
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 124 LDTLSRLNNLKFLYLDYNHFNNSIFS----SLGGLSSLRNLSLIGNRLIGSIDIKGLDSL 179
           L  L    NL  LY++       +       L GL  LRNL+++ +  +  +        
Sbjct: 24  LHHLPGAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT 79

Query: 180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
             L  L++S NA+    +  +     +L+EL+L  + LH
Sbjct: 80  PRLSRLNLSFNALE--SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 146 SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNF 204
                L G  +L  L +   + +  ++++ L  LG L  L +  + +    +  +  H  
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFT 79

Query: 205 TNLEELILDDSDLHISQLLQSIASFTSLKYLSM 237
             L  L L  +   +  L        SL+ L +
Sbjct: 80  PRLSRLNLSFN--ALESLSWKTVQGLSLQELVL 110

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N + F+  Q L+ L +        + N   +T   L++L  L LDYN F      +  GL
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYNQFLQLETGAFNGL 102

Query: 155 SSLRNLSLIGNRLIGS-IDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD 213
           ++L  L+L    L G+ +       L +LE L + DN I  +       N      L L 
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 214 D 214
            
Sbjct: 163 F 163

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 2/107 (1%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           ++ ++ L  N       +S   L  L+ L +        I       L +L  L +  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSI-ASFTSLKYLSM 237
              L      +   NLE L L   +L  + L  +     TSL+ L +
Sbjct: 91  FLQLE-TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
               +++  L  + I   +        S   +L+ L L  N  N    ++  GL+ L  L
Sbjct: 273 EASGVKTCDLSKSKIFA-LLK---SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328

Query: 161 SLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL-HNFTNLEELILDDSDLHI 219
           +L  N L GSID +  ++L  LE LD+S N I    +  +      NL+EL      L  
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR--ALGDQSFLGLPNLKEL-----ALDT 380

Query: 220 SQLLQSIAS--FTSLKYLS 236
           +Q L+S+    F  L  L 
Sbjct: 381 NQ-LKSVPDGIFDRLTSLQ 398

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSSLGGLS 155
           F     L  L L  N + G +++        L+ L+ L L YNH     +  F    GL 
Sbjct: 319 FWGLTHLLKLNLSQNFL-GSIDS---RMFENLDKLEVLDLSYNHIRALGDQSFL---GLP 371

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           +L+ L+L  N+L  S+     D L +L+++ +  N
Sbjct: 372 NLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSSLRNLSLI 163
            ++L LI  ++   + +      S L N+  +Y+  +     + S S   LS + ++ + 
Sbjct: 33  TQTLKLIETHLR-TIPS---HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDD 214
             R +  ID   L  L  L+ L + +  +       ++++      L + D
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGL 154
           +  F    ++  + +        ++    D L  L  LKFL +           + +   
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDP---DALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 155 SSLRNLSLIGNRLIGSIDIKGLDSLGN-LEELDMSDNAINNLVIPKELHNFTNLEELILD 213
                L +  N  + SI +     L N    L + +N   +  +     N T L+ + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLN 187

Query: 214 D 214
            
Sbjct: 188 K 188

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 15/109 (13%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
           + + L L   H       +   L ++  + +  +  +  ++     +L  +  +++ +  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT- 90

Query: 192 INNLV-IPKE-LHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMG 238
             NL  I  + L     L+ L + ++ L +   L  + S      L + 
Sbjct: 91  -RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 39/161 (24%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI------AGCVENEGLDTLSRLNN 132
           +++R+TRN       ++         L+ L +    +            +    L   +N
Sbjct: 85  IEIRNTRNLTY----IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 133 -----------------LKFLYLDYNHFN---NSIFSSLGGLSSLRNLSLIGNRLIGSID 172
                               L L  N F       F+     + L  + L  N+ +  ID
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN----GTKLDAVYLNKNKYLTVID 196

Query: 173 IKGLDSLGN-LEELDMSDNAINNLVIPKELHNFTNLEELIL 212
                 + +    LD+S  ++  L  P +     +L+ELI 
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTAL--PSKG--LEHLKELIA 233

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
               L +  N+ +    S +  LS LR L +  NR I  +DI        LE LD+S N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK 80

Query: 192 INNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           +  +      H   NL+ L L  +      + +   + + LK+L +    L 
Sbjct: 81  LVKI----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 11/141 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN--SIFSSLGGLSS 156
            +       L    N +     +   +    L  L+ L L  N       I      + S
Sbjct: 320 PSKISPFLHLDFSNNLLT----DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216
           L+ L +  N +             +L  L+MS N + + +          ++ L L  + 
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP---RIKVLDLHSN- 431

Query: 217 LHISQLLQSIASFTSLKYLSM 237
             I  + + +    +L+ L++
Sbjct: 432 -KIKSIPKQVVKLEALQELNV 451

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 6/166 (3%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
             + + +     ++       T  + L    ++ +                 +N+     
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY----IYEIFSNMNIKNF 307

Query: 139 DYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VI 197
             +            +S   +L    N L      +    L  LE L +  N +  L  I
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 198 PKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
            +      +L++L +  + +   +     +   SL  L+M    LT
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L +  N I+          +  L+ L+ L + +N       S       L  L L  
Sbjct: 23  TTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           N+L   I         NL+ LD+S NA + L I KE  N + L+ L L  + L 
Sbjct: 79  NKL-VKISC---HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 11/139 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +L  L +  N I   ++            L++L L +N              +L+
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDI---SVFKFNQELEYLDLSHNKLVKISC---HPTVNLK 93

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
           +L L  N        K   ++  L+ L +S   +        +    +L    +      
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGE 149

Query: 219 ISQLLQSIASFTSLKYLSM 237
                +           S+
Sbjct: 150 TYGEKEDPEGLQDFNTESL 168

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 16/130 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS--RLNNLKFLYLDYNHFNN-SIFSSLG 152
            S+F   Q+LE L L  N          L  +S     NLK L L +N F+   I    G
Sbjct: 62  ISVFKFNQELEYLDLSHNK---------LVKISCHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
            +S L+ L L    L  S     +  + +L    +           ++     +     L
Sbjct: 113 NMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168

Query: 213 DDSDLHISQL 222
                   + 
Sbjct: 169 HIVFPTNKEF 178

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 25/116 (21%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG--- 152
           A + T  + L+ L +  N+++   +           +L  L +  N   ++IF  L    
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCS---WTKSLLSLNMSSNILTDTIFRCLPPRI 423

Query: 153 ------------------GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
                              L +L+ L++  N+L  S+     D L +L+++ +  N
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 15/155 (9%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
             P   L+ L L  N        +    +S    LKFL L   H   S    +  L+  +
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSVLPIAHLNISK 142

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHN---------FTNLEE 209
            L ++G       D    + L +     +      N      L            +N++ 
Sbjct: 143 VLLVLGETYGEKED---PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           ++ D+   +   +L  + +   L  L++     T 
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF------------- 143
            L      LE +    N +      E L  L  L  L  +Y D N               
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220

Query: 144 ---NNSI--FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP 198
              NN +     L  L  L  +    N L  ++     D   +LE L++ DN + +L  P
Sbjct: 221 VAGNNILEELPELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTDL--P 273

Query: 199 KELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           +   + T      LD S+   S L +      +L YL+     + 
Sbjct: 274 ELPQSLTF-----LDVSENIFSGLSELP---PNLYYLNASSNEIR 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 29/154 (18%)

Query: 103 QQLESLYLIGNNIAG-CVENEGLDTLSRLNN-----------LKFLYLDYNHFNNSIFSS 150
             LESL    N++       + L +L   NN           L++L +  N         
Sbjct: 91  PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK--LPE 148

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNLVIPKELHNFTNLEE 209
           L   S L+ + +  N L      K L D   +LE +   +N +  L    EL N   L  
Sbjct: 149 LQNSSFLKIIDVDNNSL------KKLPDLPPSLEFIAAGNNQLEEL---PELQNLPFLTA 199

Query: 210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           +         + L +      SL+ +  G   L 
Sbjct: 200 I-----YADNNSLKKLPDLPLSLESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 25/147 (17%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
            L      LES+    N +      E L  L  L  L  +Y D N    ++        S
Sbjct: 209 KLPDLPLSLESIVAGNNIL------EELPELQNLPFLTTIYADNNLL-KTLPDLPP---S 258

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216
           L  L++  N L   +     +   +L  LD+S+N  + L   +      NL  L    S 
Sbjct: 259 LEALNVRDNYLT-DLP----ELPQSLTFLDVSENIFSGL--SELP---PNLYYLNA--SS 306

Query: 217 LHISQLLQSIASFTSLKYLSMGFCTLT 243
             I  L        SL+ L++    L 
Sbjct: 307 NEIRSLCDLP---PSLEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 28/140 (20%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L  L    N I    +           +L+ L +  N     + +       L  L   
Sbjct: 298 NLYYLNASSNEIRSLCDL--------PPSLEELNVSNNKLI-ELPALPP---RLERLIAS 345

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL 223
            N L   +     +   NL++L +  N +     P    +  +L            S L 
Sbjct: 346 FNHL-AEVP----ELPQNLKQLHVEYNPLREF--PDIPESVEDLRMN---------SHLA 389

Query: 224 QSIASFTSLKYLSMGFCTLT 243
           +      +LK L +    L 
Sbjct: 390 EVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 22/140 (15%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
            L     +LE L    N++        +  L    NLK L+++YN            +  
Sbjct: 331 ELPALPPRLERLIASFNHL------AEVPEL--PQNLKQLHVEYNPLR-EFPDIPESVED 381

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD 216
           LR    + + L      +  +   NL++L +  N +     P    +  +L   +  +  
Sbjct: 382 LR----MNSHLA-----EVPELPQNLKQLHVETNPLREF--PDIPESVEDLR--MNSERV 428

Query: 217 LHISQLLQSIASFTSLKYLS 236
           +   +               
Sbjct: 429 VDPYEFAHETTDKLEDDVFE 448

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 21/145 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  L    NNI        LD LS+  NL +L  D N   N     +  L+ L 
Sbjct: 60  IEKLTGLTKLICTSNNI------TTLD-LSQNTNLTYLACDSNKLTN---LDVTPLTKLT 109

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L+   N+L   +D+        L  L+ + N +  +    ++ + T L EL        
Sbjct: 110 YLNCDTNKLT-KLDVSQNP---LLTYLNCARNTLTEI----DVSHNTQLTELDC--HLNK 159

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT 243
               L  +   T L  L   F  +T
Sbjct: 160 KITKL-DVTPQTQLTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 21/145 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +    L  L    N +           +   +N +   LD +         +   + L 
Sbjct: 123 VSQNPLLTYLNCARNTLT---------EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLT 173

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L    N++   +D+        L  L+   N I  L    +L+    L  L    +   
Sbjct: 174 TLDCSFNKIT-ELDVSQNK---LLNRLNCDTNNITKL----DLNQNIQLTFLDCSSN--K 223

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT 243
           ++++   +   T L Y       LT
Sbjct: 224 LTEI--DVTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 18/139 (12%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
             S       +    +     +  +L  L  L    +   +   + +  L+ L  L    
Sbjct: 20  FASEVAAAFEM----QATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTS 73

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ 224
           N  I ++D+       NL  L    N + NL    ++   T L  L  D +   +++L  
Sbjct: 74  NN-ITTLDLSQ---NTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTN--KLTKL-- 121

Query: 225 SIASFTSLKYLSMGFCTLT 243
            ++    L YL+    TLT
Sbjct: 122 DVSQNPLLTYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 18/145 (12%), Positives = 45/145 (31%), Gaps = 20/145 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L +L+ I  +         L  +   +N + +Y             +   + L 
Sbjct: 250 VSTLSKLTTLHCIQTD---------LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L      +   +D+        L  L +++  +  L    ++ + T L+ L   ++ + 
Sbjct: 301 LLDCQAAGIT-ELDLSQNP---KLVYLYLNNTELTEL----DVSHNTKLKSLSCVNAHI- 351

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLT 243
             Q   S+    +L           
Sbjct: 352 --QDFSSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 30/166 (18%), Positives = 46/166 (27%), Gaps = 42/166 (25%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF--------------- 143
                QL  L    N +        +D ++ L  L +     N                 
Sbjct: 208 LNQNIQLTFLDCSSNKL------TEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH 260

Query: 144 --NNSIFS-SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE 200
                +    L   + L      G R I  +D+        L  LD     I  L    +
Sbjct: 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT---QLYLLDCQAAGITEL----D 313

Query: 201 LHNFTNLEELILDD---SDLHISQLLQSIASFTSLKYLSMGFCTLT 243
           L     L  L L++   ++L +S         T LK LS     + 
Sbjct: 314 LSQNPKLVYLYLNNTELTELDVSHN-------TKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 21/148 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L SL    ++I        +  + +L  L  L    N+        L   ++L 
Sbjct: 38  EEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKLICTSNNITT---LDLSQNTNLT 88

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L+   N+L  ++D+  L     L  L+   N +  L    ++     L  L    +   
Sbjct: 89  YLACDSNKL-TNLDVTPLT---KLTYLNCDTNKLTKL----DVSQNPLLTYLNC--ARNT 138

Query: 219 ISQLLQSIASFTSLKYLSMGFCTLTGAL 246
           ++++   ++  T L  L          L
Sbjct: 139 LTEI--DVSHNTQLTELDCHLNKKITKL 164

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           +N             +   S   L++L +L    + +    D+ G++ L  L +L  + N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSN 74

Query: 191 AINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
            I  L    +L   TNL  L  D +   ++ L   +   T L YL+     LT
Sbjct: 75  NITTL----DLSQNTNLTYLACDSN--KLTNL--DVTPLTKLTYLNCDTNKLT 119

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L     Q +++    N I        LD    L  LK L ++ N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
             L L  N L+   D+  L SL +L  L +  N + N 
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 10/92 (10%)

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDS-LGNLEELDMSDNAINNLVIPKELHNFTNL 207
           +        R L L G ++     I+ L + L   + +D SDN I  L           L
Sbjct: 13  AQYTNAVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRL 66

Query: 208 EELILDDSDLHISQLLQSIA-SFTSLKYLSMG 238
           + L++  ++  I ++ + +  +   L  L + 
Sbjct: 67  KTLLV--NNNRICRIGEGLDQALPDLTELILT 96

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 8e-08
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 23/138 (16%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L+ L +  N +        L  L     L+++  D N     +        SL  LS
Sbjct: 119 PASLKHLDVDNNQL------TMLPEL--PALLEYINADNNQLT-MLPELPT---SLEVLS 166

Query: 162 LIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL--ILDDSDLH 218
           +  N+L        L +   +LE LD+S N + +L  P       + EE        +  
Sbjct: 167 VRNNQL------TFLPELPESLEALDVSTNLLESL--PAVPVRNHHSEETEIFFRCRENR 218

Query: 219 ISQLLQSIASFTSLKYLS 236
           I+ + ++I S      + 
Sbjct: 219 ITHIPENILSLDPTCTII 236

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 25/150 (16%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTL--SRLNNLKFLYLDYNHFNNSIFSSLGG 153
           A  F+ + + E   L G N      NE +  L    +N    L L+  + + S+  +L  
Sbjct: 27  ADYFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP- 79

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD 213
              +  L +  N LI S+     +   +LE LD  DN ++ L  P+      +L+ L + 
Sbjct: 80  -PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTL--PELP---ASLKHLDV- 127

Query: 214 DSDLHISQLLQSIASFTSLKYLSMGFCTLT 243
             +  ++ L +       L+Y++     LT
Sbjct: 128 -DNNQLTMLPELP---ALLEYINADNNQLT 153

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 19/147 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF---NNSIFSSLG 152
                   Q   L +  N     +E      LS       L+L+ N     +NS F+   
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAFNGT- 177

Query: 153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL 212
               L  L+L  N  +  +             LD+S   I++L      +   NL++L  
Sbjct: 178 ---QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL----PSYGLENLKKLRA 230

Query: 213 DDSDLHISQL--LQSIASFTSLKYLSM 237
                    L  L ++    +L   S+
Sbjct: 231 ----RSTYNLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLSSLRNLSLI 163
              L  +   +    +       S   +L+ + +  N     I       L  L  + + 
Sbjct: 32  AIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 164 GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD-LHISQL 222
               +  I+ +   +L NL+ L +S+  I +L    ++H   +L++++LD  D ++I  +
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHL---PDVHKIHSLQKVLLDIQDNINIHTI 144

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 25/140 (17%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN----------------------NLKFL 136
           F+ F  LE + +  N++   +E +    L +L+                      NL++L
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL-GNLEELDMSDNAINNL 195
            +      +              L +  N  I +I+      L      L ++ N I   
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168

Query: 196 VIPKELHNFTNLEELILDDS 215
            I     N T L+EL L D+
Sbjct: 169 -IHNSAFNGTQLDELNLSDN 187

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 27/166 (16%)

Query: 104 QLESLYLIGNNI--AGCV-------ENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSS 150
            LE LYL  N +             E            L+ +    N   N        +
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 151 LGGLSSLRNLSLIGNRL----IGSIDIKGLDSLGNLEELDMSDNAINN---LVIPKELHN 203
                 L  + ++ N +    I  + ++GL     L+ LD+ DN   +     +   L +
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 204 FTNLEELILDDSDL------HISQLLQSIASFTSLKYLSMGFCTLT 243
           + NL EL L+D  L       +            L+ L + +  + 
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSK-LENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNI--AGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFS 149
           A  F   + L ++ ++ N I   G       + L+    LK L L  N F +    ++  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 150 SLGGLSSLRNLSLIGNRL--IGSIDI-KGLDSLGN--LEELDMSDNAINN---LVIPKEL 201
           +L    +LR L L    L   G+  +      L N  L+ L +  N I       +   +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 202 -HNFTNLEELILD-----DSDLHISQLLQSIASFTSLKYLSM 237
                +L  L L+     + D  + ++ +  ++    +   +
Sbjct: 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 36/171 (21%)

Query: 105 LESLYLIGNNIAGCVENEG----LDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSS 156
           +E   L  + I      E        L   +++K + L  N         +  ++     
Sbjct: 6   IEGKSLKLDAI----TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 157 LRNLSLIGNRL--IGSIDIKGLDSLG-------NLEELDMSDNAINN---LVIPKELHNF 204
           L            +     + L  L         L  + +SDNA        +   L   
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 205 TNLEELILDDSDL------HISQLLQSIASF------TSLKYLSMGFCTLT 243
           T LE L L ++ L       I++ LQ +A          L+ +  G   L 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 14/120 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN---HFNNSIFSSLGGLS 155
           F+P+++L  + L  N I+        D    L +L  L L  N       S+F    GL 
Sbjct: 52  FSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLVLYGNKITELPKSLFE---GLF 104

Query: 156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDD 214
           SL+ L L  N++   + +     L NL  L + DN +    I K        ++ + L  
Sbjct: 105 SLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHFN---NSIFSS 150
              F   + L SL L GN I        L       L +L+ L L+ N  N      F  
Sbjct: 73  PDAFQGLRSLNSLVLYGNKI------TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ- 125

Query: 151 LGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
              L +L  LSL  N+L  +I       L  ++ + ++ N
Sbjct: 126 --DLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLGG 153
            +F    QL  +    N I    E          + +  + L  N      + +F    G
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLENVQHKMFK---G 103

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELIL 212
           L SL+ L L  NR+   +       L ++  L + DN I    +         +L  L L
Sbjct: 104 LESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTLNL 160

Query: 213 DD 214
             
Sbjct: 161 LA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHF---NNSIFSSLGG 153
           F     +  + L  N +      E +       L +LK L L  N      N  F    G
Sbjct: 77  FEGASGVNEILLTSNRL------ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---G 127

Query: 154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
           LSS+R LSL  N++  ++     D+L +L  L++  N  N
Sbjct: 128 LSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 132 NLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
               L L+ N F           L  LR ++   N+ I  I+    +    + E+ ++ N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91

Query: 191 AINNLVIPKELHNFTNLEELILDDSDLH 218
            + N+   K      +L+ L+L  + + 
Sbjct: 92  RLENVQ-HKMFKGLESLKTLMLRSNRIT 118

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 22/131 (16%)

Query: 96  ASLFTPFQQLESLYLIGNNI----AGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIF 148
           +  F    +L  LYL  N +    AG            L NL+ L++  N        +F
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQTLPAG--------IFKELKNLETLWVTDNKLQALPIGVF 105

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL-HNFTNL 207
                L +L  L L  N+ + S+  +  DSL  L  L +  N + +L  PK +    T+L
Sbjct: 106 D---QLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSL--PKGVFDKLTSL 159

Query: 208 EELILDDSDLH 218
           +EL L ++ L 
Sbjct: 160 KELRLYNNQLK 170

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 21/184 (11%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI--AGCVENEGL-DTLSRLNNLK 134
           +L L D    ++    +   L  P  +LE L L   ++  A C   E L   L    + K
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC---EPLASVLRAKPDFK 173

Query: 135 FLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRL--IGSIDI-KGLDSLGNLEELD 186
            L +  N  N +    L          L  L L    +      D+   + S  +L EL 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 187 MSDNAINN----LVIPKELHNFTNLEELILDD---SDLHISQLLQSIASFTSLKYLSMGF 239
           +  N + +     + P  LH  + L  L + +   +      L + + +  SLK LS+  
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293

Query: 240 CTLT 243
             L 
Sbjct: 294 NELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 21/165 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNI--AGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
           A L    QQ + + L    +  A C   + +   L     L  L L  N   +     + 
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVL 77

Query: 153 -GLSS----LRNLSLIGNRL--IGSIDI-KGLDSLGNLEELDMSDNAINN----LVIPKE 200
            GL +    ++ LSL    L   G   +   L +L  L+EL +SDN + +    L+    
Sbjct: 78  QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 201 LHNFTNLEELILDD---SDLHISQLLQSIASFTSLKYLSMGFCTL 242
           L     LE+L L+    S      L   + +    K L++    +
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF--NNSIFSSLGGL 154
            + +   +L++L L G  ++    +  ++TL++ +NL  L L         ++ + L   
Sbjct: 112 GILSQCSKLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167

Query: 155 SSLRNLSLIGNRLIGSIDIKGL--DSLGNLEELDMSD--NAINNLVIPKELHNFTNLEEL 210
           S L  L+L          ++         + +L++S     +    +   +    NL  L
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227

Query: 211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTL 242
            L DS +  +   Q       L++LS+  C  
Sbjct: 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 41/210 (19%), Positives = 80/210 (38%), Gaps = 23/210 (10%)

Query: 47  CLQNCWVDDENYSDCCQWERVECN------DTTGRVIKLDLRDTRNWESAEWYMNASLFT 100
               C       SD   W+ ++        D TGR++   +   R   S      A  F+
Sbjct: 32  VSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS 91

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
           PF+ ++ + L  + I     +     LS+ + L+ L L+    ++ I ++L   S+L  L
Sbjct: 92  PFR-VQHMDLSNSVI---EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 161 SLIGNRLIGSIDIKGL-DSLGNLEELDMS------DNAINNLVIPKELHNFTNLEELILD 213
           +L G        ++ L  S   L+EL++S      +  +   V     H    + +L L 
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV----AHVSETITQLNLS 203

Query: 214 DSDLHIS-QLLQSIASF-TSLKYLSMGFCT 241
               ++    L ++     +L +L +    
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
            +    + + SL  +  ++     +    T +   ++  L L  N    S+F  L     
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPK 451

Query: 157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKE-LHNFTNLEELILDD 214
           ++ L L  NR+  SI  K +  L  L+EL+++ N + +  +P       T+L+ + L D
Sbjct: 452 VKVLDLHNNRI-MSIP-KDVTHLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELD 186
           +S L+ L+ L L +N   +  F        L  L +  NRL  +I       + +L  LD
Sbjct: 72  ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNI---SCCPMASLRHLD 127

Query: 187 MSDNAINNLVIPKELHNFTNLEELILDDSDL 217
           +S N  + L + KE  N T L  L L  +  
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 97  SLFTPFQQLESLYLIGNNI----AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
           +L++ F ++    L  ++       C            ++  FL    N F +S+F    
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVC--------PPSPSSFTFLNFTQNVFTDSVFQGCS 374

Query: 153 GLSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI 211
            L  L+ L L  N L           ++ +LE LD+S N++N+    +      ++  L 
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 212 LDDSDLH 218
           L  + L 
Sbjct: 435 LSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
                + +  L L  N + G V       L     +K L L  N    SI   +  L +L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSV----FRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQAL 475

Query: 158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
           + L++  N+L  S+     D L +L+ + + DN
Sbjct: 476 QELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 60/225 (26%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWE----RV 67
            +F  L           +QE      ++ F  +        V   NY     +     + 
Sbjct: 66  RLFWTL---------LSKQEE----MVQKFVEE--------VLRINYK----FLMSPIKT 100

Query: 68  ECNDTTGRVIKLDLRDTRNWESAEWY--MNASLFTPFQQL-ESLYLI--GNNI-----AG 117
           E    +        +  R +   + +   N S   P+ +L ++L  +    N+      G
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 118 CVENEG---LDTLSRLNNLKFLYLDYNHFNNSIF-SSLGGLSSLRNLSLIGNRLIGSID- 172
                G   +  L    + K         +  IF  +L   +S   +  +  +L+  ID 
Sbjct: 161 S----GKTWV-ALDVCLSYKVQ----CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 173 --IKGLDSLGNLE-ELDMSDNAINNLVIPKELHNFTNLEELILDD 214
                 D   N++  +      +  L+  K   N   L  L+L +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CL--LVLLN 252

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 40/274 (14%), Positives = 80/274 (29%), Gaps = 79/274 (28%)

Query: 25  EGCLE-------QERYALLQLRHFFNDD-----QCLQNCWVDDENY------SDCCQWER 66
           E  L        ++ +  L +   F          L   W D          +   ++  
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 67  VECNDTTGRV----IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE 122
           VE       +    I L+L+     E A   ++ S+      ++  Y    NI    +++
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYA---LHRSI------VDH-Y----NIPKTFDSD 462

Query: 123 GLDTLSRLNNLKFLYLDYNHFNN-------SIFSSLGGLSSLRNLSLIGNRLIGS-IDIK 174
            L     L+   + ++ + H  N       ++F  +       +   +  ++        
Sbjct: 463 DL-IPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMV-----FLDFRFLEQKIRHDSTAWN 515

Query: 175 GLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASF----- 229
              S+ N                   L      +  I D+ D    +L+ +I  F     
Sbjct: 516 ASGSILNT------------------LQQLKFYKPYICDN-DPKYERLVNAILDFLPKIE 556

Query: 230 TSLKYLSMGFCTLTGALHGQGKLRVSEAFMILIR 263
            +L   S     L  AL  + +    EA   + R
Sbjct: 557 ENL-ICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 87  WESAEWYMNASLFTPFQQLESLYLIGNNIAGC-VENEGLDTLSRLNNLKFLYLDY-NHFN 144
           +   + +       P   L+   +   +     + + G D +  L  ++ + L   ++  
Sbjct: 40  YHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99

Query: 145 NSIFSSLGGLS----SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
           +     L  L     S+  + +I    +    I  L    NL+ L +SD
Sbjct: 100 DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 29/171 (16%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-----NNLKFLYLDYNHFNNS---- 146
            +       + SL L GN++      +  D L ++      N+  L L  N+  +     
Sbjct: 131 QAFSNLPASITSLNLRGNDL----GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186

Query: 147 IFSSLGGL-SSLRNLSLIGNRLIGSIDIKGLDSL-----GNLEELDMSDNAINNL---VI 197
           +   L  + +S+ +L L  N  +G      L  +      ++  L++  N ++      +
Sbjct: 187 LAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245

Query: 198 PKELHNFTNLEELILDDSDL------HISQLLQSIASFTSLKYLSMGFCTL 242
                +  +L+ + LD   +          L  +  +   +  +      +
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 136 LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL 195
           L L          ++  GL+ L  L+L  N+L  ++     D L  L  L +++N + +L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 196 --VIPKELHNFTNLEELILDDSDLHISQLLQSIA-----SFTSLKYLSMG 238
              +   L   T L++L      L  +Q L+S+        T LK L + 
Sbjct: 99  PLGVFDHL---TQLDKL-----YLGGNQ-LKSLPSGVFDRLTKLKELRLN 139

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 19/144 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L L GN +        +  L  L NL +L L  N   +        L++L+
Sbjct: 59  IQYLPNVRYLALGGNKL------HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH 218
            L L+ N+L  S+     D L NL  L+++ N + +L         TNL EL     DL 
Sbjct: 113 ELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTEL-----DLS 165

Query: 219 ISQLLQSIAS-----FTSLKYLSM 237
            +Q LQS+        T LK L +
Sbjct: 166 YNQ-LQSLPEGVFDKLTQLKDLRL 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.71
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.03
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.72
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.84
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.03

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.5e-34  Score=243.84  Aligned_cols=209  Identities=24%  Similarity=0.408  Sum_probs=169.6

Q ss_pred             CCCcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCCC--CCceEEcCCC--CcEEEEecCCCCCcccccccccccccc
Q 024731           25 EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTT--GRVIKLDLRDTRNWESAEWYMNASLFT  100 (263)
Q Consensus        25 ~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~  100 (263)
                      +.|.++|++||++||+++.++. .+++|.   .+.+||.  |.||.|+...  ++|+.++++++.+.....   .+..+.
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~---~~~~l~   73 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP---IPSSLA   73 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE---CCGGGG
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcc---cChhHh
Confidence            3699999999999999997554 688997   4678998  9999998644  799999999999852102   244678


Q ss_pred             CCcCCcEEEccC-cccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731          101 PFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (263)
Q Consensus       101 ~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  179 (263)
                      .+++|++|++++ |.+.+.+|..    +..+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|. .+..+
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l  148 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSL  148 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGC
T ss_pred             CCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcC
Confidence            899999999995 8888877764    78888999999999998888888888889999999999988877887 78888


Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCC-CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFT-NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++|++|++++|.+++.+|.. +..++ +|++|++++|++++.. |..+..++ |++|++++|.+++.+|.
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~-~~~~~~l~-L~~L~Ls~N~l~~~~~~  215 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI-PPTFANLN-LAFVDLSRNMLEGDASV  215 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC-CGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred             CCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccC-ChHHhCCc-ccEEECcCCcccCcCCH
Confidence            88999999999888767765 77777 8888888888887666 67777776 77777777777765554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=2e-31  Score=249.56  Aligned_cols=221  Identities=24%  Similarity=0.269  Sum_probs=155.5

Q ss_pred             cCCCcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCCCCCceEEcCCCCcEEEEecCCCCCccccc-cc---------
Q 024731           24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAE-WY---------   93 (263)
Q Consensus        24 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~-~~---------   93 (263)
                      ++.+.++|++||++||+++.++. .+++|.   .+.+||.|.||+|+  .++|++++++++.+...-. ..         
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            44668899999999999998666 799997   46789999999997  6899999999988742100 00         


Q ss_pred             ---------c--ccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC-CCCCCCCEEE
Q 024731           94 ---------M--NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNLS  161 (263)
Q Consensus        94 ---------~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~  161 (263)
                               +  .+..++.+++|++|++++|.+.+.+|..  ..++.+++|++|++++|.+++.+|..+ .++++|++|+
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence                     0  1145777888888888888887766541  125666667777777666665555543 4555555555


Q ss_pred             cCCCcCCCCcCcc------------------------ccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCC
Q 024731          162 LIGNRLIGSIDIK------------------------GLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL  217 (263)
Q Consensus       162 L~~n~l~~~~p~~------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  217 (263)
                      +++|.+++..|..                        .+..+++|++|++++|.+.+.+|.  ++++++|++|++++|.+
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l  235 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKL  235 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCC
T ss_pred             CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcC
Confidence            5555554333220                        125667777777777777775443  78888888888888888


Q ss_pred             CcccchhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731          218 HISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS  255 (263)
Q Consensus       218 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~  255 (263)
                      ++.. |..++.+++|++|++++|.+++.+|...+.+|+
T Consensus       236 ~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~  272 (768)
T 3rgz_A          236 SGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ  272 (768)
T ss_dssp             CSCH-HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred             CCcc-cHHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence            8777 788888888888888888888887774444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.4e-30  Score=237.59  Aligned_cols=205  Identities=18%  Similarity=0.243  Sum_probs=173.9

Q ss_pred             CCcHHHHHHHHHHhhhCC-CCCCCC-------CCCcCCCCCCCCCCC---CceEEcCCCCcEEEEecCCCCCcccccccc
Q 024731           26 GCLEQERYALLQLRHFFN-DDQCLQ-------NCWVDDENYSDCCQW---ERVECNDTTGRVIKLDLRDTRNWESAEWYM   94 (263)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~-~~~~~~-------~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~   94 (263)
                      ....+|+.||.++|.++. +++...       .+|+   .+.+||.|   .||.|+. .++|++|+++++++.  |..  
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~--g~l--   97 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS--GRV--   97 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCE--EEE--
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecCcccC--CcC--
Confidence            455679999999999988 333322       3797   46899999   9999986 489999999999984  442  


Q ss_pred             ccccccCCcCCcEEEccCccc-----------------------------------------------------------
Q 024731           95 NASLFTPFQQLESLYLIGNNI-----------------------------------------------------------  115 (263)
Q Consensus        95 ~~~~~~~l~~L~~L~l~~n~l-----------------------------------------------------------  115 (263)
                       +..++.+++|++|++++|.+                                                           
T Consensus        98 -p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~  176 (636)
T 4eco_A           98 -PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK  176 (636)
T ss_dssp             -CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred             -ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence             35689999999999999954                                                           


Q ss_pred             -------------------CCCCCcccccccCCCCCCCEEEccCCcCCcc-----------------ccccCC--CCCCC
Q 024731          116 -------------------AGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-----------------IFSSLG--GLSSL  157 (263)
Q Consensus       116 -------------------~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L  157 (263)
                                         ++ +|    ..++++++|++|+|++|.+++.                 +|..++  ++++|
T Consensus       177 ~~~~~~l~~l~l~~~~n~l~~-ip----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L  251 (636)
T 4eco_A          177 KSSRITLKDTQIGQLSNNITF-VS----KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL  251 (636)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE-EC----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             cccccchhhhhhccccCCCcc-CC----HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence                               12 22    3478899999999999999985                 899999  99999


Q ss_pred             CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCC-CCC-CCchhhhcCC------CCCcEEEcCCCCCCcccchh--hhh
Q 024731          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INN-LVIPKELHNF------TNLEELILDDSDLHISQLLQ--SIA  227 (263)
Q Consensus       158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~l~~l------~~L~~L~l~~n~l~~~~~~~--~l~  227 (263)
                      ++|++++|.+.+.+|. .+.++++|++|++++|. +++ .+|.. ++.+      ++|++|++++|+++ .+ |.  .++
T Consensus       252 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~-~i-p~~~~l~  327 (636)
T 4eco_A          252 TDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK-TF-PVETSLQ  327 (636)
T ss_dssp             CEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-SC-CCHHHHT
T ss_pred             CEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC-cc-Cchhhhc
Confidence            9999999999999997 89999999999999998 887 67765 7665      89999999999998 66 77  899


Q ss_pred             cCCCCCEEEecCcccccccCc
Q 024731          228 SFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       228 ~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      .+++|++|++++|.++|.+|.
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip~  348 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLPA  348 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECCC
T ss_pred             cCCCCCEEeCcCCcCccchhh
Confidence            999999999999999988984

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=9.2e-29  Score=232.47  Aligned_cols=209  Identities=15%  Similarity=0.196  Sum_probs=164.3

Q ss_pred             cCCCcHHHHHHHHHHhhhCCCCCCCCCCCcCCC--CCCCC--CCC------------CceEEcCCCCcEEEEecCCCCCc
Q 024731           24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDE--NYSDC--CQW------------ERVECNDTTGRVIKLDLRDTRNW   87 (263)
Q Consensus        24 ~~~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~   87 (263)
                      .+.+..+|+.||++||+++.++     +|....  ...+|  |.|            .||.|+. .++|+.|+|+++++.
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~  336 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK  336 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence            4456788999999999999743     676211  01344  999            9999986 689999999999984


Q ss_pred             cccccccccccccCCcCCcEEEc-cCcccCCCCCcc--------------------------------------------
Q 024731           88 ESAEWYMNASLFTPFQQLESLYL-IGNNIAGCVENE--------------------------------------------  122 (263)
Q Consensus        88 ~~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~--------------------------------------------  122 (263)
                        |.  + +..++.+++|+.|+| ++|.+.|..+..                                            
T Consensus       337 --G~--i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          337 --GR--V-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             --EE--E-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             --Cc--C-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence              43  2 456899999999999 777654431100                                            


Q ss_pred             ----------------------------cccccCCCCCCCEEEccCCcCCc-----------------cccccCC--CCC
Q 024731          123 ----------------------------GLDTLSRLNNLKFLYLDYNHFNN-----------------SIFSSLG--GLS  155 (263)
Q Consensus       123 ----------------------------~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~  155 (263)
                                                  ++..+.++++|++|+|++|.+++                 .+|..++  +++
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~  491 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK  491 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred             ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence                                        22347888999999999999997                 3888887  999


Q ss_pred             CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCC-CCC-CCchhhhcCC-------CCCcEEEcCCCCCCcccchh--
Q 024731          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INN-LVIPKELHNF-------TNLEELILDDSDLHISQLLQ--  224 (263)
Q Consensus       156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~~--  224 (263)
                      +|++|++++|.+.+.+|. .+.++++|++|++++|. +++ .+|.. ++++       ++|++|++++|.++ .+ |.  
T Consensus       492 ~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~-~i-p~~~  567 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE-EF-PASA  567 (876)
T ss_dssp             TCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC-BC-CCHH
T ss_pred             CCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC-cc-CChh
Confidence            999999999999989997 89999999999999998 887 56654 4444       48888899888888 55 66  


Q ss_pred             hhhcCCCCCEEEecCcccccccCc
Q 024731          225 SIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       225 ~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      .++.+++|++|++++|.++ .+|.
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp~  590 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLEA  590 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCCC
T ss_pred             hhhcCCCCCEEECCCCCcc-cchh
Confidence            7888888888888888888 7773

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.9e-29  Score=214.01  Aligned_cols=216  Identities=18%  Similarity=0.232  Sum_probs=132.3

Q ss_pred             CCCcHHHHHHHHHHhhhCC-CCCCCCCCCcC-CCCCCCCCCCCceEEcC--------CCCcEEEEecCCCCCcccccccc
Q 024731           25 EGCLEQERYALLQLRHFFN-DDQCLQNCWVD-DENYSDCCQWERVECND--------TTGRVIKLDLRDTRNWESAEWYM   94 (263)
Q Consensus        25 ~~~~~~~~~aL~~~~~~~~-~~~~~~~~W~~-~~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~~   94 (263)
                      ..+..+|++||++||+.+. ++......|.. .....++|.|.|+.|..        ...+|+.++++++.+...     
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~l-----   96 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF-----   96 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSC-----
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhc-----
Confidence            3566789999999999885 44445677841 12467899999999952        346899999999987532     


Q ss_pred             ccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCC----
Q 024731           95 NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGS----  170 (263)
Q Consensus        95 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----  170 (263)
                       +..+..+++|++|++++|.++ .+|..    +..+++|++|++++|.++ .+|..++++++|++|++++|++.+.    
T Consensus        97 -p~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~  169 (328)
T 4fcg_A           97 -PDQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP  169 (328)
T ss_dssp             -CSCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred             -ChhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh
Confidence             223455666666666666665 33332    455555555555555555 4455555555555555555444444    


Q ss_pred             ----------------------------cCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccc
Q 024731          171 ----------------------------IDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL  222 (263)
Q Consensus       171 ----------------------------~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  222 (263)
                                                  +|. .+..+++|++|++++|.+++ +|+. +..+++|++|++++|.+.+.+ 
T Consensus       170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~-l~~~-l~~l~~L~~L~Ls~n~~~~~~-  245 (328)
T 4fcg_A          170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSA-LGPA-IHHLPKLEELDLRGCTALRNY-  245 (328)
T ss_dssp             SEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCC-CCGG-GGGCTTCCEEECTTCTTCCBC-
T ss_pred             HhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCc-Cchh-hccCCCCCEEECcCCcchhhh-
Confidence                                        443 45555666666666666655 4443 566666666666666666555 


Q ss_pred             hhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731          223 LQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       223 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      |..++.+++|++|++++|.+.+.+|. .+.++++|
T Consensus       246 p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L  279 (328)
T 4fcg_A          246 PPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQL  279 (328)
T ss_dssp             CCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTC
T ss_pred             HHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCC
Confidence            56666666666666666666666665 34444333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=9.5e-25  Score=180.04  Aligned_cols=170  Identities=22%  Similarity=0.251  Sum_probs=124.2

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .++.|+++++.+..     +.+..|..+++|++|++++|.++...+..    +..+++|++|++++|.+++..+..+.++
T Consensus        38 ~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l  108 (270)
T 2o6q_A           38 DTKKLDLQSNKLSS-----LPSKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNKLQALPIGVFDQL  108 (270)
T ss_dssp             TCSEEECCSSCCSC-----CCTTSSSSCTTCCEEECCSSCCSCCCTTT----TSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEECcCCCCCe-----eCHHHhcCCCCCCEEECCCCccCeeChhh----hcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence            45667777776642     33446788888999999998887655542    6778888888888888886666677888


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      ++|++|++++|.+++..+. .+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.. +..+..+++|++
T Consensus       109 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  185 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKT  185 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCE
T ss_pred             cCCCEEECCCCccCeeCHH-HhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCE
Confidence            8888888888888754443 67788888888888888877 44444778888888888888887554 566778888888


Q ss_pred             EEecCcccccccCccchhcHHHH
Q 024731          235 LSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       235 L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      |++++|++++ +|...+..+++|
T Consensus       186 L~L~~N~l~~-~~~~~~~~l~~L  207 (270)
T 2o6q_A          186 LKLDNNQLKR-VPEGAFDSLEKL  207 (270)
T ss_dssp             EECCSSCCSC-CCTTTTTTCTTC
T ss_pred             EECCCCcCCc-CCHHHhccccCC
Confidence            8888888874 444234444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=2.9e-24  Score=175.26  Aligned_cols=163  Identities=21%  Similarity=0.243  Sum_probs=134.8

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.+++++|.+..     +.+..+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..|..
T Consensus        35 ~~l~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  105 (251)
T 3m19_A           35 ADTEKLDLQSTGLAT-----LSDATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDH  105 (251)
T ss_dssp             TTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCCEEEccCCCcCc-----cCHhHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhcc
Confidence            357788888888753     33456788999999999999998876653    788999999999999999777778889


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+++ +|...+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|+
T Consensus       106 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  182 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQ  182 (251)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCC
T ss_pred             cCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCC
Confidence            9999999999999885 444367889999999999999988 45544888999999999999998655 67888999999


Q ss_pred             EEEecCcccccccCc
Q 024731          234 YLSMGFCTLTGALHG  248 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~  248 (263)
                      +|++++|++++..+.
T Consensus       183 ~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          183 TITLFGNQFDCSRCE  197 (251)
T ss_dssp             EEECCSCCBCTTSTT
T ss_pred             EEEeeCCceeCCccc
Confidence            999999999876443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=1.4e-22  Score=165.30  Aligned_cols=180  Identities=22%  Similarity=0.286  Sum_probs=147.9

Q ss_pred             CCCCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEcc
Q 024731           60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLD  139 (263)
Q Consensus        60 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls  139 (263)
                      +||.|.|..|..   ..+.++++++.+...+.     . +  .+.++.|++++|.+.+..+..    +..+++|++|+++
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p~-----~-~--~~~l~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~   67 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLDSVPS-----G-I--PADTEKLDLQSTGLATLSDAT----FRGLTKLTWLNLD   67 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCSSCCS-----C-C--CTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCccccCC-----C-C--CCCCCEEEccCCCcCccCHhH----hcCcccCCEEECC
Confidence            578899999953   33468999988764322     1 2  258999999999999877754    8899999999999


Q ss_pred             CCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCc
Q 024731          140 YNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHI  219 (263)
Q Consensus       140 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  219 (263)
                      +|.+++..+..+.++++|++|++++|.+++..+. .+..+++|++|++++|.+++ +++..+..+++|++|++++|++++
T Consensus        68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCcCCccCHhHhccCCcCCEEECCCCcccccChh-HhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCc
Confidence            9999988888899999999999999999854444 78999999999999999998 555558899999999999999996


Q ss_pred             ccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          220 SQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       220 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      .. +..++.+++|++|++++|++++..|. .+.++++|+
T Consensus       146 ~~-~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~  182 (251)
T 3m19_A          146 IP-AGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQ  182 (251)
T ss_dssp             CC-TTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCC
T ss_pred             cC-HHHcCcCcCCCEEECCCCcCCccCHH-HHhCCCCCC
Confidence            55 66899999999999999999965554 455554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1.1e-23  Score=197.30  Aligned_cols=91  Identities=22%  Similarity=0.254  Sum_probs=51.7

Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      ++|++|++++|+++|.+|. .++.+++|++|+|++|.++|.+|.. ++++++|++|++++|+++|.+ |..++.+++|++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~  708 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRI-PQAMSALTMLTE  708 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECC-CGGGGGCCCCSE
T ss_pred             ccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCE
Confidence            3444555555555555554 5555555555555555555555544 555555666666666665555 555556666666


Q ss_pred             EEecCcccccccCc
Q 024731          235 LSMGFCTLTGALHG  248 (263)
Q Consensus       235 L~l~~n~l~~~~p~  248 (263)
                      |++++|+++|.||.
T Consensus       709 L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          709 IDLSNNNLSGPIPE  722 (768)
T ss_dssp             EECCSSEEEEECCS
T ss_pred             EECcCCcccccCCC
Confidence            66666666666555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.4e-23  Score=164.11  Aligned_cols=169  Identities=24%  Similarity=0.370  Sum_probs=106.9

Q ss_pred             CCCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCC
Q 024731           61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (263)
Q Consensus        61 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~  131 (263)
                      .|.|.++.|...         ..+++.+++++|.+..     +.+..+..+++|++|++++|.+++..+..    +..++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~   76 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKLT   76 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-----CChhhhcccccCcEEECCCCccCccChhh----cCCCC
Confidence            478999999752         1246667777776642     22344566677777777777766544432    56667


Q ss_pred             CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEE
Q 024731          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELI  211 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  211 (263)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..+. .+..+++|++|++++|.+++ ++...+..+++|++|+
T Consensus        77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEE
T ss_pred             CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCCccce-eCHHHhccCCCccEEE
Confidence            777777777777655455566677777777777776643332 56666777777777777766 3333366667777777


Q ss_pred             cCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          212 LDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       212 l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +++|.+.+.        +++|+.|+++.|.++|.+|.
T Consensus       155 l~~N~~~~~--------~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          155 LHDNPWDCT--------CPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             CCSCCBCCC--------TTTTHHHHHHHHHCTTTBBC
T ss_pred             ecCCCeecC--------CCCHHHHHHHHHhCCceeec
Confidence            777765532        33566666777777777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=6.6e-23  Score=170.13  Aligned_cols=140  Identities=24%  Similarity=0.269  Sum_probs=78.3

Q ss_pred             cccCCcCCcEEEccCcc-cCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc
Q 024731           98 LFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL  176 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  176 (263)
                      .+..+++|++|++++|. +....+..    +..+++|++|++++|.+++..|..+.++++|++|++++|.+.+..+. .+
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~  149 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLRSVDPAT----FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-TF  149 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TT
T ss_pred             hcCCccCCCEEeCCCCCCccccCHHH----hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh-Hh
Confidence            34455555555555554 43332322    45555666666666665554455555566666666666665532222 45


Q ss_pred             CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccccc
Q 024731          177 DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       177 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  244 (263)
                      ..+++|++|++++|.+++ ++...+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++
T Consensus       150 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             TTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCc
Confidence            556666666666666655 33333555666666666666666544 5566666666666666666664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=3.9e-23  Score=173.95  Aligned_cols=163  Identities=21%  Similarity=0.252  Sum_probs=114.3

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.+++++|.+..     ..+..+..+++|++|++++|.+++.+|..    +..+++|++|++++|.+++.+|..+..
T Consensus       101 ~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~  171 (313)
T 1ogq_A          101 TQLHYLYITHTNVSG-----AIPDFLSQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             TTCSEEEEEEECCEE-----ECCGGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             CCCCEEECcCCeeCC-----cCCHHHhCCCCCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhh
Confidence            356778888887742     12345667777777777777777665543    566666666666666666666666666


Q ss_pred             CC-CCCEEEcCCCcCCCCcCc----------------------cccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEE
Q 024731          154 LS-SLRNLSLIGNRLIGSIDI----------------------KGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL  210 (263)
Q Consensus       154 l~-~L~~L~L~~n~l~~~~p~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  210 (263)
                      ++ +|++|++++|.+++.+|.                      ..+..+++|++|++++|.+++.. +. +..+++|++|
T Consensus       172 l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~-~~~l~~L~~L  249 (313)
T 1ogq_A          172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK-VGLSKNLNGL  249 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GG-CCCCTTCCEE
T ss_pred             hhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec-Cc-ccccCCCCEE
Confidence            65 666666666655433332                      15666777777777777777643 33 6778888888


Q ss_pred             EcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       211 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++++|++++.+ |..+..+++|++|++++|+++|.+|.
T Consensus       250 ~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          250 DLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             ECCSSCCEECC-CGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ECcCCcccCcC-ChHHhcCcCCCEEECcCCcccccCCC
Confidence            99989888777 88899999999999999999998888

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=8.8e-22  Score=162.43  Aligned_cols=162  Identities=25%  Similarity=0.263  Sum_probs=139.7

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      -..++.+++++|.+...       ..+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..++
T Consensus        62 l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~  130 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDI-------SALKELTNLTYLILTGNQLQSLPNGV----FDKLTNLKELVLVENQLQSLPDGVFD  130 (272)
T ss_dssp             CTTCCEEECTTSCCCCC-------GGGTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCCCcEEECCCCCCCCc-------hhhcCCCCCCEEECCCCccCccChhH----hcCCcCCCEEECCCCcCCccCHHHhc
Confidence            34788999999988532       35788999999999999999876653    78899999999999999977777789


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      .+++|++|++++|.+++..+. .+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|
T Consensus       131 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  207 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSL  207 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTC
T ss_pred             cCCCCCEEECCCCccCccCHH-HhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCC
Confidence            999999999999999854443 68899999999999999998 44544889999999999999999766 7778999999


Q ss_pred             CEEEecCcccccccCc
Q 024731          233 KYLSMGFCTLTGALHG  248 (263)
Q Consensus       233 ~~L~l~~n~l~~~~p~  248 (263)
                      ++|++++|++.+..|.
T Consensus       208 ~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          208 QYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CEEECCSSCBCCCTTT
T ss_pred             CEEEccCCCccccCcH
Confidence            9999999999987764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=4.5e-23  Score=174.73  Aligned_cols=173  Identities=19%  Similarity=0.209  Sum_probs=140.6

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccc-----cccCCCCCCCEEEccCCcCCccccc
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGL-----DTLSRLNNLKFLYLDYNHFNNSIFS  149 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~l~~L~~L~Ls~n~l~~~~p~  149 (263)
                      +++.+++++|.+..     + +..+..+++|++|++++|++.+.+|....     ..+..+++|++|++++|.++ .+|.
T Consensus       128 ~L~~L~Ls~n~l~~-----l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~  200 (328)
T 4fcg_A          128 GLETLTLARNPLRA-----L-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA  200 (328)
T ss_dssp             TCSEEEEESCCCCC-----C-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG
T ss_pred             CCCEEECCCCcccc-----C-cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH
Confidence            45566666665531     1 33467777888888888777766665311     11334889999999999998 7888


Q ss_pred             cCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcC
Q 024731          150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASF  229 (263)
Q Consensus       150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l  229 (263)
                      .++++++|++|++++|.+++ +|. .+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+ |..++.+
T Consensus       201 ~l~~l~~L~~L~L~~N~l~~-l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~-p~~~~~l  276 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLSA-LGP-AIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTL-PLDIHRL  276 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCCC-CCG-GGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBC-CTTGGGC
T ss_pred             hhcCCCCCCEEEccCCCCCc-Cch-hhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhc-chhhhcC
Confidence            89999999999999999985 676 7899999999999999999988776 999999999999999999888 8899999


Q ss_pred             CCCCEEEecCcccccccCccchhcHHHHHH
Q 024731          230 TSLKYLSMGFCTLTGALHGQGKLRVSEAFM  259 (263)
Q Consensus       230 ~~L~~L~l~~n~l~~~~p~~~l~~L~~L~~  259 (263)
                      ++|++|++++|++.+.+|. .+.+|+++..
T Consensus       277 ~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~  305 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPS-LIAQLPANCI  305 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCG-GGGGSCTTCE
T ss_pred             CCCCEEeCCCCCchhhccH-HHhhccCceE
Confidence            9999999999999999998 6666665544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.1e-22  Score=165.17  Aligned_cols=168  Identities=23%  Similarity=0.230  Sum_probs=141.0

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.++++++.+...       ..+..+++|++|++++|.+++. +     .+..+++|++|++++|.+++..+..+.+
T Consensus        41 ~~L~~L~l~~~~i~~~-------~~l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~  107 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV-------QGIQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQLQSLPNGVFDK  107 (272)
T ss_dssp             TTCCEEECTTSCCCCC-------TTGGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             cceeeeeeCCCCcccc-------cccccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCccCccChhHhcC
Confidence            4688899999987532       2478899999999999999874 2     2889999999999999999877778899


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+++..+. .+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..++.+++|+
T Consensus       108 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~  184 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLK  184 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             CcCCCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCC
Confidence            99999999999999865544 78999999999999999998 45554889999999999999999665 77789999999


Q ss_pred             EEEecCcccccccCccchhcHHHHH
Q 024731          234 YLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      +|++++|++++..|. .+.++++|+
T Consensus       185 ~L~L~~N~l~~~~~~-~~~~l~~L~  208 (272)
T 3rfs_A          185 DLRLYQNQLKSVPDG-VFDRLTSLQ  208 (272)
T ss_dssp             EEECCSSCCSCCCTT-TTTTCTTCC
T ss_pred             EEECCCCcCCccCHH-HHhCCcCCC
Confidence            999999999976554 444444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=1.6e-22  Score=167.84  Aligned_cols=162  Identities=20%  Similarity=0.186  Sum_probs=86.1

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCc-CCccccccCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGG  153 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~  153 (263)
                      .++.++++++.+..     +.+..|..+++|++|++++|.+++..+..    +..+++|++|++++|. ++...|..+..
T Consensus        33 ~l~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           33 ASQRIFLHGNRISH-----VPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             TCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CceEEEeeCCcCCc-----cCHHHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhcC
Confidence            45555665555532     22334555555666666665555443332    5555566666666654 44444555555


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+.+..|. .+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.. +..+..+++|+
T Consensus       104 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~  180 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLD  180 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCC
T ss_pred             CcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCcccccC-HHHhcCccccC
Confidence            56666666666655543333 45555566666666665555 22223555556666666666555332 34455555666


Q ss_pred             EEEecCcccccccCc
Q 024731          234 YLSMGFCTLTGALHG  248 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~  248 (263)
                      +|++++|.+++..|.
T Consensus       181 ~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPH  195 (285)
T ss_dssp             EEECCSSCCCEECTT
T ss_pred             EEECCCCcccccCHh
Confidence            666666655544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.88  E-value=1e-21  Score=158.06  Aligned_cols=162  Identities=24%  Similarity=0.245  Sum_probs=128.7

Q ss_pred             CCCCCCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEE
Q 024731           58 YSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY  137 (263)
Q Consensus        58 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~  137 (263)
                      +.+.|.|.+|.|...  +          +..     ++.. +  .++|++|++++|.+++..+..    +..+++|++|+
T Consensus        15 ~~~~Cs~~~v~c~~~--~----------l~~-----ip~~-~--~~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~   70 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSK--R----------HAS-----VPAG-I--PTNAQILYLHDNQITKLEPGV----FDSLINLKELY   70 (229)
T ss_dssp             TTCEEETTEEECTTS--C----------CSS-----CCSC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEE
T ss_pred             CCCEEeCCEeEccCC--C----------cCc-----cCCC-C--CCCCCEEEcCCCccCccCHHH----hhCccCCcEEE
Confidence            667899999999641  1          211     1111 1  278899999999998876653    78899999999


Q ss_pred             ccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCC
Q 024731          138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL  217 (263)
Q Consensus       138 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  217 (263)
                      |++|.++...+..|..+++|++|++++|.+++. +...+..+++|++|++++|.++. +|.. +..+++|++|++++|++
T Consensus        71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A           71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLTE-LPRG-IERLTHLTHLALDQNQL  147 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCS-CCTT-GGGCTTCSEEECCSSCC
T ss_pred             CCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCcccc-cCcc-cccCCCCCEEECCCCcC
Confidence            999999865556778999999999999998854 44367889999999999999985 6765 88899999999999999


Q ss_pred             CcccchhhhhcCCCCCEEEecCcccccccC
Q 024731          218 HISQLLQSIASFTSLKYLSMGFCTLTGALH  247 (263)
Q Consensus       218 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p  247 (263)
                      ++.. +..+..+++|+.|++++|++.+..+
T Consensus       148 ~~~~-~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          148 KSIP-HGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCC-TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CccC-HHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8655 6778889999999999999887655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=5.1e-23  Score=172.45  Aligned_cols=177  Identities=19%  Similarity=0.244  Sum_probs=103.6

Q ss_pred             CCCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCC--Ccc-------
Q 024731           61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCV--ENE-------  122 (263)
Q Consensus        61 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-------  122 (263)
                      .|.|.++.|...         ...++.+++++|.+..     +....|..+++|++|++++|.++...  +..       
T Consensus         6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-----cCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence            378999999752         2468899999998853     33455778888888888888876331  111       


Q ss_pred             ------------cccccCCCCCCCEEEccCCcCCcccc-ccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCC
Q 024731          123 ------------GLDTLSRLNNLKFLYLDYNHFNNSIF-SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD  189 (263)
Q Consensus       123 ------------~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~  189 (263)
                                  ....+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+. .+..+++|++|++++
T Consensus        81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTT
T ss_pred             CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCC
Confidence                        00113344445555555554443222 3445555555555555555443333 455556666666666


Q ss_pred             CCCCC-CCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731          190 NAINN-LVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  245 (263)
Q Consensus       190 n~l~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  245 (263)
                      |.+.+ ..|. .+..+++|++|++++|++++.. +..+..+++|++|++++|.+++.
T Consensus       160 n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          160 NSFQENFLPD-IFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSL  214 (306)
T ss_dssp             CEEGGGEECS-CCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBC
T ss_pred             Cccccccchh-HHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCcc
Confidence            65554 2233 2556666666666666666544 55666666666666666666643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.3e-21  Score=163.00  Aligned_cols=159  Identities=22%  Similarity=0.210  Sum_probs=122.6

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.+++++|.+..     +.+..|..+++|++|++++|.+++..+      ...+++|++|++++|.++ .+|..+..
T Consensus        31 ~~l~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-~l~~~~~~   98 (290)
T 1p9a_G           31 KDTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-SLPLLGQT   98 (290)
T ss_dssp             TTCCEEECTTSCCSE-----EEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred             CCCCEEEcCCCcCCc-----cCHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-cCchhhcc
Confidence            467889999998853     334567888899999999988876433      367788888888888887 67777888


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|++++..+. .+..+++|++|++++|.+++ +++..+..+++|+.|++++|+++... +..+..+++|+
T Consensus        99 l~~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~  175 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLD  175 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCC
Confidence            88888888888888754333 78888888888888888887 45555778888888888888887543 55677788888


Q ss_pred             EEEecCcccccccCc
Q 024731          234 YLSMGFCTLTGALHG  248 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~  248 (263)
                      +|++++|+++ .+|.
T Consensus       176 ~L~L~~N~l~-~ip~  189 (290)
T 1p9a_G          176 TLLLQENSLY-TIPK  189 (290)
T ss_dssp             EEECCSSCCC-CCCT
T ss_pred             EEECCCCcCC-ccCh
Confidence            8888888887 5665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=8.7e-22  Score=173.15  Aligned_cols=171  Identities=21%  Similarity=0.187  Sum_probs=100.0

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.+++++|.+..     +.+..|..+++|++|++++|.+++..+..    |.++++|++|+|++|++++..+..|..
T Consensus        64 ~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  134 (440)
T 3zyj_A           64 TNTRLLNLHENQIQI-----IKVNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLNTLELFDNRLTTIPNGAFVY  134 (440)
T ss_dssp             TTCSEEECCSCCCCE-----ECTTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred             CCCcEEEccCCcCCe-----eCHHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCCEEECCCCcCCeeCHhHhhc
Confidence            346677888777653     22344556666666666666665443332    555555555555555555433344555


Q ss_pred             CCCCCEEEcCCCcCC------------------------CCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcE
Q 024731          154 LSSLRNLSLIGNRLI------------------------GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEE  209 (263)
Q Consensus       154 l~~L~~L~L~~n~l~------------------------~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  209 (263)
                      +++|++|++++|.+.                        +.++...+..+++|++|++++|.++. +| . +..+++|++
T Consensus       135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~-~~~l~~L~~  211 (440)
T 3zyj_A          135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-N-LTPLIKLDE  211 (440)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-C-CTTCSSCCE
T ss_pred             cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-c-cCCCcccCE
Confidence            555555555555544                        23333345556666666666666654 33 2 566677777


Q ss_pred             EEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       210 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      |++++|++++.. +..+..+++|++|++++|++++..|. .+.++++|+
T Consensus       212 L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~  258 (440)
T 3zyj_A          212 LDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLV  258 (440)
T ss_dssp             EECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTT-SSTTCTTCC
T ss_pred             EECCCCccCccC-hhhhccCccCCEEECCCCceeEEChh-hhcCCCCCC
Confidence            777777777555 66777777777777777777755444 444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=7.7e-23  Score=174.83  Aligned_cols=176  Identities=28%  Similarity=0.332  Sum_probs=132.3

Q ss_pred             CCCCCCCceEEcC-----------CCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCccccccc
Q 024731           59 SDCCQWERVECND-----------TTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL  127 (263)
Q Consensus        59 ~~~c~w~gv~c~~-----------~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  127 (263)
                      ...|.|.++ |+-           ...+++.+++++|.+..     +.+..+..+++|++|++++|.+++..+..    +
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~   96 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----ISNSDLQRCVNLQALVLTSNGINTIEEDS----F   96 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTT----T
T ss_pred             CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----cCHHHhccCCCCCEEECCCCccCccCHhh----c
Confidence            455777766 542           12368899999998853     33446788899999999999888766543    7


Q ss_pred             CCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCc-cccCCCCCCCEEEcCCCC-CCCCCchhhhcCCC
Q 024731          128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNA-INNLVIPKELHNFT  205 (263)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~  205 (263)
                      ..+++|++|++++|.+++..+..++++++|++|++++|.+.+ +|. ..+..+++|++|++++|. +.. +++..+..++
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~  174 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLT  174 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCC
T ss_pred             CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccc-cCHHHccCCC
Confidence            888999999999999986555558888999999999998874 443 367888899999998885 544 4444478888


Q ss_pred             CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +|++|++++|++++.. +..+..+++|++|++++|.++ .+|.
T Consensus       175 ~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~-~~~~  215 (353)
T 2z80_A          175 FLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHI-LLLE  215 (353)
T ss_dssp             EEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSCST-THHH
T ss_pred             CCCEEECCCCCcCccC-HHHHhccccCCeecCCCCccc-cchh
Confidence            8888888888888665 777888888888888888775 3443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=1.1e-21  Score=173.13  Aligned_cols=181  Identities=22%  Similarity=0.198  Sum_probs=120.0

Q ss_pred             CCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCC
Q 024731           64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK  134 (263)
Q Consensus        64 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~  134 (263)
                      |..+.|...         ...++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    |..+++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-----IQADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCce-----ECHHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence            466777642         2468899999998853     33455777778888888887777655443    66677777


Q ss_pred             EEEccCCcCCccccccCCCCCCCCEEEcCCCcCCC------------------------CcCccccCCCCCCCEEEcCCC
Q 024731          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG------------------------SIDIKGLDSLGNLEELDMSDN  190 (263)
Q Consensus       135 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------------------~~p~~~~~~l~~L~~L~L~~n  190 (263)
                      +|+|++|.+++..+..|..+++|++|++++|.+..                        .++...+..+++|++|++++|
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            77777777765555556666777777777666552                        222223555666666666666


Q ss_pred             CCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          191 AINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       191 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      .+++ +| . +..+++|++|++++|++++.. +..+..+++|++|++++|++++..|. .+.++++|+
T Consensus       207 ~l~~-~~-~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~  269 (452)
T 3zyi_A          207 NIKD-MP-N-LTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLV  269 (452)
T ss_dssp             CCSS-CC-C-CTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTCC
T ss_pred             cccc-cc-c-ccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCcCceECHH-HhcCCCCCC
Confidence            6665 33 2 666777777788888777655 77788888888888888888765554 454444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=7.1e-22  Score=174.12  Aligned_cols=181  Identities=23%  Similarity=0.271  Sum_probs=145.1

Q ss_pred             CCCCCCCc--eEEcCC--------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccC
Q 024731           59 SDCCQWER--VECNDT--------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS  128 (263)
Q Consensus        59 ~~~c~w~g--v~c~~~--------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  128 (263)
                      ...|.|.+  +.|...        ..+++.+++++|.+..     +.+..+..+++|++|++++|.+.+.++..   .+.
T Consensus         5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~   76 (455)
T 3v47_A            5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE-----LNETSFSRLQDLQFLKVEQQTPGLVIRNN---TFR   76 (455)
T ss_dssp             --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCE-----ECTTTTSSCTTCCEEECCCCSTTCEECTT---TTT
T ss_pred             cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCc-----CChhHhccCccccEEECcCCcccceECcc---ccc
Confidence            34565544  777652        2568999999998853     34567899999999999999998666542   488


Q ss_pred             CCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCc-cccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCC
Q 024731          129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKELHNFTNL  207 (263)
Q Consensus       129 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  207 (263)
                      .+++|++|++++|.+++..|..++++++|++|++++|.+++..+. ..+..+++|++|++++|.+++..|...+.++++|
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            999999999999999988899999999999999999999875543 1388999999999999999986665547899999


Q ss_pred             cEEEcCCCCCCcccchhhhhcC----------------------------------CCCCEEEecCcccccccCc
Q 024731          208 EELILDDSDLHISQLLQSIASF----------------------------------TSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       208 ~~L~l~~n~l~~~~~~~~l~~l----------------------------------~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++|++++|++++.. +..+..+                                  ++|++|++++|.+++.+|.
T Consensus       157 ~~L~L~~n~l~~~~-~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  230 (455)
T 3v47_A          157 HVLDLTFNKVKSIC-EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK  230 (455)
T ss_dssp             CEEECTTCCBSCCC-TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred             cEEeCCCCcccccC-hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence            99999999998765 6555543                                  6788888888888776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=6.2e-21  Score=152.54  Aligned_cols=157  Identities=16%  Similarity=0.139  Sum_probs=127.3

Q ss_pred             EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCC
Q 024731           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (263)
Q Consensus        78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  157 (263)
                      .++++++.+...+     . .+  ...+++|++++|.+++..+..   .+..+++|++|++++|.+++..+..|.++++|
T Consensus        15 ~l~~s~n~l~~iP-----~-~~--~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A           15 TVDCSNQKLNKIP-----E-HI--PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             EEECCSSCCSSCC-----S-CC--CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             EeEeCCCCcccCc-----c-CC--CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            4666666664322     1 12  235689999999998775542   36789999999999999997777789999999


Q ss_pred             CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM  237 (263)
Q Consensus       158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  237 (263)
                      ++|++++|.+++..+. .+..+++|++|++++|.+++..+.. +..+++|++|++++|++++.. |..+..+++|++|++
T Consensus        84 ~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           84 NEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNL  160 (220)
T ss_dssp             CEEECCSSCCCCCCGG-GGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCccCHh-HhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEe
Confidence            9999999999865443 7899999999999999999855554 889999999999999999776 888999999999999


Q ss_pred             cCcccccccCc
Q 024731          238 GFCTLTGALHG  248 (263)
Q Consensus       238 ~~n~l~~~~p~  248 (263)
                      ++|++++..+.
T Consensus       161 ~~N~l~c~c~l  171 (220)
T 2v70_A          161 LANPFNCNCYL  171 (220)
T ss_dssp             CSCCEECSGGG
T ss_pred             cCcCCcCCCch
Confidence            99999876553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=172.45  Aligned_cols=180  Identities=23%  Similarity=0.302  Sum_probs=138.6

Q ss_pred             CCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCC
Q 024731           63 QWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNL  133 (263)
Q Consensus        63 ~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L  133 (263)
                      .|..|.|...         ...++.|++++|.+..     +.+..|..+++|++|++++|.+++..|..    |.++++|
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L   82 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-----LNQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNL   82 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-----ECHhHccCCCCCCEEECCCCccCEeChhh----hhCCccC
Confidence            3567777641         2467899999998864     33456888999999999999988776653    7888999


Q ss_pred             CEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcC
Q 024731          134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD  213 (263)
Q Consensus       134 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  213 (263)
                      ++|+|++|.+++..+..|.++++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+. .+..+++|++|+++
T Consensus        83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~  160 (477)
T 2id5_A           83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLE  160 (477)
T ss_dssp             CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEE
T ss_pred             CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeChh-hccCCCCCCEEECC
Confidence            9999999998865556788889999999999988765555 788888999999999888875444 38888888888888


Q ss_pred             CCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731          214 DSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS  255 (263)
Q Consensus       214 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~  255 (263)
                      +|++++.. +..+..+++|+.|++++|.+++..+. .+.+++
T Consensus       161 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~  200 (477)
T 2id5_A          161 KCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDY-SFKRLY  200 (477)
T ss_dssp             SCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTT-CSCSCT
T ss_pred             CCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChh-hcccCc
Confidence            88887655 66788888888888888888764443 444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=1.4e-20  Score=155.04  Aligned_cols=162  Identities=25%  Similarity=0.299  Sum_probs=140.1

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.+++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..|..
T Consensus        61 ~~L~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~  131 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQT-----LPAGIFKELKNLETLWVTDNKLQALPIGV----FDQLVNLAELRLDRNQLKSLPPRVFDS  131 (270)
T ss_dssp             TTCCEEECCSSCCSC-----CCTTTTSSCTTCCEEECCSSCCCCCCTTT----TTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCEEECCCCccCe-----eChhhhcCCCCCCEEECCCCcCCcCCHhH----cccccCCCEEECCCCccCeeCHHHhCc
Confidence            478999999998853     44566789999999999999998776643    788999999999999999877888999


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+.+ +|...+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|+
T Consensus       132 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  208 (270)
T 2o6q_A          132 LTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLK  208 (270)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCC
T ss_pred             CcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCC
Confidence            9999999999999885 454368999999999999999998 45545889999999999999998655 66789999999


Q ss_pred             EEEecCcccccccC
Q 024731          234 YLSMGFCTLTGALH  247 (263)
Q Consensus       234 ~L~l~~n~l~~~~p  247 (263)
                      .|++++|++....+
T Consensus       209 ~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          209 MLQLQENPWDCTCN  222 (270)
T ss_dssp             EEECCSSCBCCSSS
T ss_pred             EEEecCCCeeCCCc
Confidence            99999999986654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=4.4e-22  Score=179.44  Aligned_cols=170  Identities=24%  Similarity=0.296  Sum_probs=132.6

Q ss_pred             CCCCCceEEcCC-----------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCC
Q 024731           61 CCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR  129 (263)
Q Consensus        61 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  129 (263)
                      .|.|.|+ |+..           ..+++.+++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~   72 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----IGHGDLRACANLQVLILKSSRINTIEGDA----FYS   72 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----ECSSTTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc-----cChhhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence            4778887 7531           2478999999998853     33456889999999999999998776653    889


Q ss_pred             CCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCC-CcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc
Q 024731          130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE  208 (263)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  208 (263)
                      +++|++|++++|.+++..|..++++++|++|++++|.+.+ ..|. .+..+++|++|++++|.+.+.++...+..+++|+
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  151 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN  151 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence            9999999999999998777779999999999999999875 3454 7889999999999999865556655588899999


Q ss_pred             EEEcCCCCCCcccchhhhhcCCCCCEEEecCccc
Q 024731          209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL  242 (263)
Q Consensus       209 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  242 (263)
                      +|++++|.+++.. |..++.+++|++|++++|.+
T Consensus       152 ~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          152 ELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             EEEEEETTCCEEC-TTTTTTCSEEEEEEEECSBS
T ss_pred             eeeccCCcccccC-hhhhhccccCceEecccCcc
Confidence            9999999988765 66666555444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.2e-20  Score=145.72  Aligned_cols=157  Identities=21%  Similarity=0.214  Sum_probs=130.6

Q ss_pred             EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      +.++.+++++....     .   .-.+++++|++++|.+++..+..    +..+++|++|++++|++++..+..|..+++
T Consensus        10 ~~v~c~~~~l~~~p-----~---~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (208)
T 2o6s_A           10 TTVECYSQGRTSVP-----T---GIPAQTTYLDLETNSLKSLPNGV----FDELTSLTQLYLGGNKLQSLPNGVFNKLTS   77 (208)
T ss_dssp             TEEECCSSCCSSCC-----S---CCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEecCCCccCCC-----C---CCCCCCcEEEcCCCccCcCChhh----hcccccCcEEECCCCccCccChhhcCCCCC
Confidence            36778877764322     1   22468999999999998766543    789999999999999999766667899999


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEE
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLS  236 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~  236 (263)
                      |++|++++|.+++ ++...+..+++|++|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|++|+
T Consensus        78 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           78 LTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIW  154 (208)
T ss_dssp             CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEE
T ss_pred             cCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEE
Confidence            9999999999985 444368899999999999999998 45545889999999999999999655 66789999999999


Q ss_pred             ecCcccccccCc
Q 024731          237 MGFCTLTGALHG  248 (263)
Q Consensus       237 l~~n~l~~~~p~  248 (263)
                      +++|.+.+..|.
T Consensus       155 l~~N~~~~~~~~  166 (208)
T 2o6s_A          155 LHDNPWDCTCPG  166 (208)
T ss_dssp             CCSCCBCCCTTT
T ss_pred             ecCCCeecCCCC
Confidence            999999987664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=1.7e-21  Score=163.16  Aligned_cols=162  Identities=22%  Similarity=0.249  Sum_probs=96.6

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      +++.+++++|.+...      +..+..+++|++|++++|.+++..+.   ..+..+++|++|++++|.+++..+..+..+
T Consensus        79 ~L~~L~Ls~n~i~~l------~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  149 (306)
T 2z66_A           79 SLKYLDLSFNGVITM------SSNFLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGL  149 (306)
T ss_dssp             CCCEEECCSCSEEEE------EEEEETCTTCCEEECTTSEEESSTTT---TTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred             ccCEEECCCCccccC------hhhcCCCCCCCEEECCCCcccccccc---hhhhhccCCCEEECCCCcCCccchhhcccC
Confidence            455566666554321      12355667777777777776655431   125666667777777666665556666666


Q ss_pred             CCCCEEEcCCCcCCC-CcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          155 SSLRNLSLIGNRLIG-SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      ++|++|++++|.+.+ .+|. .+..+++|++|++++|.+++..+.. +..+++|++|++++|++++.. +..+..+++|+
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  226 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQ  226 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCC
T ss_pred             cCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcCCcCHHH-hcCCCCCCEEECCCCccCccC-hhhccCcccCC
Confidence            666666666666654 2444 5666666666666666666533333 666666666666666665443 44556666666


Q ss_pred             EEEecCcccccccCc
Q 024731          234 YLSMGFCTLTGALHG  248 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~  248 (263)
                      +|++++|++++..|.
T Consensus       227 ~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             EEECTTSCCCBCSSS
T ss_pred             EeECCCCCCcccCHH
Confidence            666666666655544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=4.8e-21  Score=168.99  Aligned_cols=170  Identities=21%  Similarity=0.267  Sum_probs=125.2

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcc-------
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-------  146 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-------  146 (263)
                      .+++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..+++|++|++++|.++..       
T Consensus        99 ~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~  169 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQ-----IEVGAFNGLASLNTLELFDNWLTVIPSGA----FEYLSKLRELWLRNNPIESIPSYAFNR  169 (452)
T ss_dssp             TTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCSBCCTTT----SSSCTTCCEEECCSCCCCEECTTTTTT
T ss_pred             CCCCEEECCCCccCC-----cChhhccCcccCCEEECCCCcCCccChhh----hcccCCCCEEECCCCCcceeCHhHHhc
Confidence            457778888887753     23345666677777777777666544432    55556666666666655522       


Q ss_pred             -----------------cc-ccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc
Q 024731          147 -----------------IF-SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE  208 (263)
Q Consensus       147 -----------------~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  208 (263)
                                       ++ ..|.++++|++|++++|.+++ +|  .+..+++|++|++++|.+++..+. .+..+++|+
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~  245 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP--NLTPLVGLEELEMSGNHFPEIRPG-SFHGLSSLK  245 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC--CCTTCTTCCEEECTTSCCSEECGG-GGTTCTTCC
T ss_pred             CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc--cccccccccEEECcCCcCcccCcc-cccCccCCC
Confidence                             22 246778889999999999874 55  688999999999999999995555 499999999


Q ss_pred             EEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       209 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      .|++++|++++.. +..+..+++|++|++++|++++ +|...+..+++|.
T Consensus       246 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~  293 (452)
T 3zyi_A          246 KLWVMNSQVSLIE-RNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLV  293 (452)
T ss_dssp             EEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCC
T ss_pred             EEEeCCCcCceEC-HHHhcCCCCCCEEECCCCcCCc-cChHHhccccCCC
Confidence            9999999999776 8889999999999999999995 4543455554443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=4.6e-21  Score=168.52  Aligned_cols=171  Identities=23%  Similarity=0.278  Sum_probs=123.6

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc--------
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN--------  145 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------  145 (263)
                      .+++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    +..+++|++|++++|.++.        
T Consensus        88 ~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~  158 (440)
T 3zyj_A           88 RHLEILQLSRNHIRT-----IEIGAFNGLANLNTLELFDNRLTTIPNGA----FVYLSKLKELWLRNNPIESIPSYAFNR  158 (440)
T ss_dssp             SSCCEEECCSSCCCE-----ECGGGGTTCSSCCEEECCSSCCSSCCTTT----SCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred             CCCCEEECCCCcCCc-----cChhhccCCccCCEEECCCCcCCeeCHhH----hhccccCceeeCCCCcccccCHHHhhh
Confidence            356777888777643     22344566666666666666666544322    4455555555555554442        


Q ss_pred             ----------------cc-cccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc
Q 024731          146 ----------------SI-FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE  208 (263)
Q Consensus       146 ----------------~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  208 (263)
                                      .+ +..|.++++|++|++++|.++ .+|  .+..+++|++|++++|.+++..+. .+..+++|+
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~  234 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPG-SFQGLMHLQ  234 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTT-TTTTCTTCC
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCccChh-hhccCccCC
Confidence                            22 235777889999999999987 566  588999999999999999985555 499999999


Q ss_pred             EEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHHH
Q 024731          209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFM  259 (263)
Q Consensus       209 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~~  259 (263)
                      .|++++|++++.. +..+..+++|++|++++|++++ +|...+..+++|+.
T Consensus       235 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          235 KLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLER  283 (440)
T ss_dssp             EEECTTCCCCEEC-TTSSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCE
T ss_pred             EEECCCCceeEEC-hhhhcCCCCCCEEECCCCCCCc-cChhHhccccCCCE
Confidence            9999999999766 8889999999999999999995 44435555554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=2.8e-20  Score=148.69  Aligned_cols=136  Identities=21%  Similarity=0.283  Sum_probs=117.2

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  182 (263)
                      ++++.|++++|.+++..+..    +..+++|++|+|++|.+++..|..|.++++|++|++++|.++ .+|...+..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTS----STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCHhH----hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCC
Confidence            57899999999998766543    888999999999999999877889999999999999999988 4555467889999


Q ss_pred             CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731          183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  245 (263)
Q Consensus       183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  245 (263)
                      ++|+|++|.+++..+. .+..+++|++|++++|++++.. +..+..+++|++|++++|++...
T Consensus       107 ~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          107 QLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEECS
T ss_pred             CEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcCCC
Confidence            9999999999985444 4889999999999999998665 67789999999999999998753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=2.7e-20  Score=153.64  Aligned_cols=144  Identities=24%  Similarity=0.294  Sum_probs=112.4

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.+++++|.+..     +.+..+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+.+
T Consensus        28 ~~l~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             TTCCEEECTTCCCCE-----ECTTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CCccEEECCCCcccc-----cCHhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcC
Confidence            358899999998854     23446788899999999999888665543    788899999999999998777778888


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC-CchhhhcCCCCCcEEEcCCCCCCcccchhhhhcC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDDSDLHISQLLQSIASF  229 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l  229 (263)
                      +++|++|++++|.+.+..+. .+..+++|++|++++|.+++. +|.. +..+++|++|++++|++++.. +..+..+
T Consensus        99 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l  172 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-CTDLRVL  172 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-GGGGHHH
T ss_pred             CccccEEECCCCCccccCch-hcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC-HHHhhhh
Confidence            99999999999988765443 688888999999999988773 3554 888889999999998887544 4444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=5.9e-21  Score=174.02  Aligned_cols=92  Identities=21%  Similarity=0.220  Sum_probs=45.3

Q ss_pred             cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (263)
                      .|..+++|++|++++|.+++.++..    +..+++|++|+|++|.+++..+..|+++++|++|++++|.+.+..|. .+.
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~  168 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQ  168 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhh
Confidence            3444455555555555554444332    44555555555555555533333345555555555555555443333 455


Q ss_pred             CCCCCCEEEcCCCCCCC
Q 024731          178 SLGNLEELDMSDNAINN  194 (263)
Q Consensus       178 ~l~~L~~L~L~~n~l~~  194 (263)
                      .+++|++|++++|.+++
T Consensus       169 ~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          169 ATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TCTTCCEEECTTSCCSB
T ss_pred             cCCcCcEEECcCCCCCC
Confidence            55555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=4.6e-21  Score=165.88  Aligned_cols=132  Identities=20%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .++.++++++.+..     ++...+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..|..++++
T Consensus        46 ~l~~l~l~~~~l~~-----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           46 NQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             CCSEEEEESCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CceEEEecCCchhh-----CChhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            34455555554432     22223444445555555555444333321    4444444444444444444334444444


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCC
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDL  217 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  217 (263)
                      ++|++|++++|.+. .+|...+..+++|++|++++|.+.+..+. .+..+++|++|++++|++
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcC
Confidence            44444444444443 23321234444444444444444432221 234444444444444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=2.8e-20  Score=169.63  Aligned_cols=161  Identities=20%  Similarity=0.215  Sum_probs=134.1

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      ..+++.+++++|.+..     +.+..|..+++|++|++++|.+++..|..    |.++++|++|++++|.+++..|..|+
T Consensus        31 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~  101 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKI-----LKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFS  101 (606)
T ss_dssp             CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred             CCCcCEEECCCCCcCE-----eChhhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcC
Confidence            3578999999998853     34556889999999999999998776653    88999999999999999988899999


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC-CCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN-LVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS  231 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  231 (263)
                      ++++|++|++++|.+.+..+. .++.+++|++|++++|.+.+ .+|.. ++++++|++|++++|++++.. +..++.+++
T Consensus       102 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~  178 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT-VNDLQFLRE  178 (606)
T ss_dssp             TCTTCCEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC-TTTTHHHHH
T ss_pred             CcccCCEEEccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC-hhhhhhhhc
Confidence            999999999999998865545 79999999999999999986 35665 999999999999999998765 666666555


Q ss_pred             CC----EEEecCcccccc
Q 024731          232 LK----YLSMGFCTLTGA  245 (263)
Q Consensus       232 L~----~L~l~~n~l~~~  245 (263)
                      |+    ++++++|.+++.
T Consensus       179 L~~~l~~L~l~~n~l~~~  196 (606)
T 3vq2_A          179 NPQVNLSLDMSLNPIDFI  196 (606)
T ss_dssp             CTTCCCEEECTTCCCCEE
T ss_pred             cccccceeeccCCCccee
Confidence            44    788888888743

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=2.5e-20  Score=159.87  Aligned_cols=171  Identities=20%  Similarity=0.240  Sum_probs=126.5

Q ss_pred             CCCCceEEcCC---------CCcEEEEecCCCCCcccccccccccccc-CCcCCcEEEccCcccCCCCCcccccccCCCC
Q 024731           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (263)
Q Consensus        62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~  131 (263)
                      |.+..+.|...         ...++.|++++|.+..     +.+..+. .+++|++|++++|.+++..+..    |..++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~   88 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-----LRAEWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVP   88 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-----ECTTSSSSCCTTCCEEECCSSCCCEECTTT----TTTCT
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-----cChhhhhhcccccCEEECCCCcCCccChhh----ccCCC
Confidence            66777777641         2346778888888753     2344455 7888888888888887766543    77888


Q ss_pred             CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhh---cCCCCCc
Q 024731          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL---HNFTNLE  208 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~  208 (263)
                      +|++|+|++|++++..+..|.++++|++|+|++|.+.+..|. .+..+++|++|+|++|.+++ +|...+   ..+++|+
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLM  166 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCC
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCC
Confidence            888888888888866666788888888888888888754454 78888888888888888887 555534   5678888


Q ss_pred             EEEcCCCCCCcccchhhhhcCCC--CCEEEecCccccc
Q 024731          209 ELILDDSDLHISQLLQSIASFTS--LKYLSMGFCTLTG  244 (263)
Q Consensus       209 ~L~l~~n~l~~~~~~~~l~~l~~--L~~L~l~~n~l~~  244 (263)
                      +|++++|++++.. +..+..++.  ++.|++++|++..
T Consensus       167 ~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          167 LLDLSSNKLKKLP-LTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             EEECCSSCCCCCC-HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             EEECCCCCCCccC-HHHhhhccHhhcceEEecCCCccC
Confidence            8888888887544 567777776  4788888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=3.8e-20  Score=145.38  Aligned_cols=151  Identities=20%  Similarity=0.230  Sum_probs=126.9

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.++++++.+...     .  .+..+++|++|++++|.++...      .+..+++|++|++++|.+++..+..++.
T Consensus        44 ~~L~~L~l~~n~i~~l-----~--~l~~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           44 NSLTYITLANINVTDL-----T--GIEYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HTCCEEEEESSCCSCC-----T--TGGGCTTCSEEEEESCCCSCCG------GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             CCccEEeccCCCccCh-----H--HHhcCCCCCEEEccCCCCCcch------hhhcCCCCCEEEeECCccCcccChhhcC
Confidence            3578899999987531     1  4788999999999999775432      2889999999999999999888999999


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCC-CCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA-INNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      +++|++|++++|.+++..+. .+..+++|++|++++|. ++. ++ . +..+++|++|++++|++++ . + .+..+++|
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~-~~-~-l~~l~~L~~L~l~~n~i~~-~-~-~l~~l~~L  183 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD-IM-P-LKTLPELKSLNIQFDGVHD-Y-R-GIEDFPKL  183 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC-CG-G-GGGCSSCCEEECTTBCCCC-C-T-TGGGCSSC
T ss_pred             CCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc-cH-h-hcCCCCCCEEECCCCCCcC-h-H-HhccCCCC
Confidence            99999999999999876666 89999999999999998 655 54 3 8999999999999999985 3 3 78899999


Q ss_pred             CEEEecCccccc
Q 024731          233 KYLSMGFCTLTG  244 (263)
Q Consensus       233 ~~L~l~~n~l~~  244 (263)
                      ++|++++|++.+
T Consensus       184 ~~L~l~~N~i~~  195 (197)
T 4ezg_A          184 NQLYAFSQTIGG  195 (197)
T ss_dssp             CEEEECBC----
T ss_pred             CEEEeeCcccCC
Confidence            999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=3.1e-20  Score=169.48  Aligned_cols=161  Identities=22%  Similarity=0.295  Sum_probs=110.9

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.|||++|.+..     +.+..|..+++|++|+|++|.+++..+..    |.++++|++|+|++|++++..+..|.+
T Consensus        52 ~~~~~LdLs~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             TTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             cCCCEEEeeCCCCCC-----CCHHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            356778888877753     34456777788888888888777655543    677778888888888877655566777


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC-
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL-  232 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L-  232 (263)
                      +++|++|++++|++++ +|...++.+++|++|++++|.+++...+..+..+++|++|++++|++++.. +..+..++++ 
T Consensus       123 L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~l~  200 (635)
T 4g8a_A          123 LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMP  200 (635)
T ss_dssp             CTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCT
T ss_pred             CCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc-cccccchhhhh
Confidence            8888888888887774 333367777888888888887765322333677778888888888777554 5555544333 


Q ss_pred             ---CEEEecCcccccc
Q 024731          233 ---KYLSMGFCTLTGA  245 (263)
Q Consensus       233 ---~~L~l~~n~l~~~  245 (263)
                         ..++++.|.++..
T Consensus       201 ~~~~~~~ls~n~l~~i  216 (635)
T 4g8a_A          201 LLNLSLDLSLNPMNFI  216 (635)
T ss_dssp             TCCCEEECTTCCCCEE
T ss_pred             hhhhhhhcccCccccc
Confidence               3677777777643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=4.3e-20  Score=168.62  Aligned_cols=148  Identities=16%  Similarity=0.163  Sum_probs=128.0

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  182 (263)
                      +++++|+|++|.|++..+..    |.++++|++|+|++|++++..+..|.++++|++|+|++|++++ +|...|.++++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence            37999999999999876653    8999999999999999997777889999999999999999884 565589999999


Q ss_pred             CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731          183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      ++|++++|++++ +++..++++++|++|++++|.+++...|..++.+++|++|++++|++++..|. .+..++++
T Consensus       127 ~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~L~~l  199 (635)
T 4g8a_A          127 QKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQM  199 (635)
T ss_dssp             CEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTC
T ss_pred             CEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc-cccchhhh
Confidence            999999999998 55545899999999999999998654478899999999999999999976555 56555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=7.9e-20  Score=166.60  Aligned_cols=163  Identities=20%  Similarity=0.190  Sum_probs=143.1

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.+++++|.+..     +.+..|..+++|++|++++|.+.+..|..    |.++++|++|++++|.+++..|..|++
T Consensus        33 ~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           33 NSTECLEFSFNVLPT-----IQNTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             TTCCEEECTTCCCSE-----ECTTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             CcCcEEEccCCccCc-----CChhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhcc
Confidence            478999999999863     44567899999999999999998877754    899999999999999999888999999


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+++..+. .+..+++|++|++++|.+.+...+. +..+++|++|++++|.+++.. +..++.+++|+
T Consensus       104 l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  180 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQAT  180 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCC
T ss_pred             cccccEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccC-hhhhhhhcccc
Confidence            99999999999999864454 7899999999999999999843343 556999999999999999766 88899999999


Q ss_pred             --EEEecCcccccccCc
Q 024731          234 --YLSMGFCTLTGALHG  248 (263)
Q Consensus       234 --~L~l~~n~l~~~~p~  248 (263)
                        +|++++|.+++..|.
T Consensus       181 ~l~L~l~~n~l~~~~~~  197 (606)
T 3t6q_A          181 NLSLNLNGNDIAGIEPG  197 (606)
T ss_dssp             SEEEECTTCCCCEECTT
T ss_pred             eeEEecCCCccCccChh
Confidence              999999999987665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=5.1e-20  Score=156.01  Aligned_cols=173  Identities=25%  Similarity=0.396  Sum_probs=99.1

Q ss_pred             CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN  132 (263)
Q Consensus        62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~  132 (263)
                      |.|..+.|...         ...++.+++++|.+..     +.+..+..+++|++|++++|.+++..+..    +..+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~  103 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----LRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRK  103 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGGG----STTCTT
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----cCHhHhhCCCCCcEEECCCCccCccCHhH----hhCcCC
Confidence            78999998742         2368899999998753     33445777788888888888777655543    666677


Q ss_pred             CCEEEccCCcCCccccc----------------------cCCCCCCCCEEEcCCCcCCC--CcCccccCCC---------
Q 024731          133 LKFLYLDYNHFNNSIFS----------------------SLGGLSSLRNLSLIGNRLIG--SIDIKGLDSL---------  179 (263)
Q Consensus       133 L~~L~Ls~n~l~~~~p~----------------------~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l---------  179 (263)
                      |++|++++|.++ .+|.                      .+.++++|++|++++|.+..  ..+. .+..+         
T Consensus       104 L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~L~~L~l~~  181 (332)
T 2ft3_A          104 LQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGLKLNYLRISE  181 (332)
T ss_dssp             CCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSCCCSCCBCCS
T ss_pred             CCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCCccCEEECcC
Confidence            777777666665 3333                      34555555555555555431  1111 11111         


Q ss_pred             -----------CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          180 -----------GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       180 -----------~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                                 ++|++|++++|.+++..+. .+..+++|++|++++|++++.. +..+..+++|++|++++|+++ .+|.
T Consensus       182 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~-~lp~  258 (332)
T 2ft3_A          182 AKLTGIPKDLPETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLS-RVPA  258 (332)
T ss_dssp             SBCSSCCSSSCSSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred             CCCCccCccccCCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCcCe-ecCh
Confidence                       2333333333333332212 2555566666666666665443 445666666666666666665 4555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=5.8e-20  Score=155.49  Aligned_cols=170  Identities=23%  Similarity=0.332  Sum_probs=101.3

Q ss_pred             CCCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCC
Q 024731           61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (263)
Q Consensus        61 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~  131 (263)
                      .|.|..+.|...         ...++.+++++|.+..     +.+..|..+++|++|++++|.+++..|..    +..++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~  100 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKISKISPGA----FAPLV  100 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----eChhhhccCCCCCEEECCCCcCCeeCHHH----hcCCC
Confidence            468999998741         2467889999998864     33446788899999999999888776653    77778


Q ss_pred             CCCEEEccCCcCCccccc----------------------cCCCCCCCCEEEcCCCcCCC--CcCccccCCCCCCCEEEc
Q 024731          132 NLKFLYLDYNHFNNSIFS----------------------SLGGLSSLRNLSLIGNRLIG--SIDIKGLDSLGNLEELDM  187 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~----------------------~l~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~L  187 (263)
                      +|++|++++|.++ .+|.                      .+.++++|++|++++|.+..  ..+. .+..+++|++|++
T Consensus       101 ~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l  178 (330)
T 1xku_A          101 KLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRI  178 (330)
T ss_dssp             TCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEEC
T ss_pred             CCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEEC
Confidence            8888888877776 3333                      34555566666666665532  2222 4445555555555


Q ss_pred             CCCCCCCCCch---------------------hhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731          188 SDNAINNLVIP---------------------KELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       188 ~~n~l~~~~~~---------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      ++|.++. +|.                     ..+..+++|++|++++|.+++.. +..+..+++|++|++++|+++
T Consensus       179 ~~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          179 ADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             CSSCCCS-CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCS
T ss_pred             CCCcccc-CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCCcCc
Confidence            5444433 221                     12444444555555555544333 334445555555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=2.3e-20  Score=172.36  Aligned_cols=163  Identities=23%  Similarity=0.254  Sum_probs=139.8

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.+++++|.+..     +.+..|..+++|++|++++|.+++..|..    +.++++|++|++++|.+++..+..|++
T Consensus        25 ~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR-----LPAANFTRYSQLTSLDVGFNTISKLEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             TTCSEEECCSSCCCC-----CCGGGGGGGTTCSEEECCSSCCCCCCTTH----HHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCC-----cCHHHHhCCCcCcEEECCCCccCccCHHH----HhcccCcCEEECCCCccCccChhhhcc
Confidence            578999999998863     34556899999999999999999887754    788999999999999999655557999


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhh--cCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIA--SFTS  231 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~--~l~~  231 (263)
                      +++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+.. +.++++|++|++++|.+++.. +..+.  .+++
T Consensus        96 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~  172 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALK-SEELDIFANSS  172 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCE
T ss_pred             CCCCCEEECCCCccCccChh-HccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccC-HHHhhcccccc
Confidence            99999999999999865444 8999999999999999999865554 889999999999999998766 66654  5689


Q ss_pred             CCEEEecCcccccccCc
Q 024731          232 LKYLSMGFCTLTGALHG  248 (263)
Q Consensus       232 L~~L~l~~n~l~~~~p~  248 (263)
                      |++|++++|.+++..|.
T Consensus       173 L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          173 LKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             ESEEECTTCCCCCBCTT
T ss_pred             ccEEECCCCcccccChh
Confidence            99999999999976665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=2.3e-19  Score=149.35  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=134.7

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      -.+++.+++++|.+.....       ...+++|++|++++|.++....     .+..+++|++|++++|++++..+..|.
T Consensus        54 l~~L~~L~L~~n~l~~~~~-------~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~l~~N~l~~l~~~~~~  121 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQV-------DGTLPVLGTLDLSHNQLQSLPL-----LGQTLPALTVLDVSFNRLTSLPLGALR  121 (290)
T ss_dssp             CTTCCEEECTTSCCCEEEC-------CSCCTTCCEEECCSSCCSSCCC-----CTTTCTTCCEEECCSSCCCCCCSSTTT
T ss_pred             CCCCCEEECCCCccCcccC-------CCCCCcCCEEECCCCcCCcCch-----hhccCCCCCEEECCCCcCcccCHHHHc
Confidence            4578999999999864322       3688999999999999985433     278899999999999999977778899


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      ++++|++|++++|++++ +|...+..+++|++|++++|+++. +|...+..+++|++|++++|+++ .+ |..+...++|
T Consensus       122 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~-~i-p~~~~~~~~L  197 (290)
T 1p9a_G          122 GLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TI-PKGFFGSHLL  197 (290)
T ss_dssp             TCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-CC-CTTTTTTCCC
T ss_pred             CCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC-cc-ChhhcccccC
Confidence            99999999999999985 454478899999999999999997 66665788999999999999998 55 7888888999


Q ss_pred             CEEEecCcccccc
Q 024731          233 KYLSMGFCTLTGA  245 (263)
Q Consensus       233 ~~L~l~~n~l~~~  245 (263)
                      +.+++++|++...
T Consensus       198 ~~l~L~~Np~~C~  210 (290)
T 1p9a_G          198 PFAFLHGNPWLCN  210 (290)
T ss_dssp             SEEECCSCCBCCS
T ss_pred             CeEEeCCCCccCc
Confidence            9999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.3e-19  Score=144.79  Aligned_cols=150  Identities=20%  Similarity=0.288  Sum_probs=127.8

Q ss_pred             CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN  132 (263)
Q Consensus        62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~  132 (263)
                      |.|..+.|...         ...++.+++++|.+....    ....|..+++|++|++++|.+++..+..    |..+++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~~   82 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLE----ATGIFKKLPQLRKINFSNNKITDIEEGA----FEGASG   82 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC----CCCCGGGCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccC----chhhhccCCCCCEEECCCCcCCEECHHH----hCCCCC
Confidence            67888888652         235678999999986421    2345789999999999999999876643    899999


Q ss_pred             CCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEc
Q 024731          133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL  212 (263)
Q Consensus       133 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  212 (263)
                      |++|+|++|.+++..+..|.++++|++|++++|.+.+..|. .+..+++|++|++++|.+++..|.. +..+++|++|++
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L  160 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNL  160 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEEC
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEe
Confidence            99999999999988888899999999999999999976665 8999999999999999999955554 999999999999


Q ss_pred             CCCCCCccc
Q 024731          213 DDSDLHISQ  221 (263)
Q Consensus       213 ~~n~l~~~~  221 (263)
                      ++|.+.+..
T Consensus       161 ~~N~l~c~c  169 (220)
T 2v70_A          161 LANPFNCNC  169 (220)
T ss_dssp             CSCCEECSG
T ss_pred             cCcCCcCCC
Confidence            999997654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=5.5e-20  Score=161.99  Aligned_cols=139  Identities=24%  Similarity=0.213  Sum_probs=122.8

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  182 (263)
                      ++|++|++++|.+.+..+..    +..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..|. .+..+++|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L  349 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSV----FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR-MFENLDKL  349 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GGTTCTTC
T ss_pred             cCceEEEecCccccccchhh----cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh-HhcCcccC
Confidence            58999999999998777654    88999999999999999988888999999999999999999765554 88999999


Q ss_pred             CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++|++++|.+++..+.. +..+++|++|++++|++++.. +..+..+++|++|++++|++++.+|.
T Consensus       350 ~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQS-FLGLPNLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEECCCCcccccChhh-ccccccccEEECCCCccccCC-HhHhccCCcccEEEccCCCcccCCCc
Confidence            99999999998855554 999999999999999998654 66788999999999999999998885

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=6.1e-21  Score=154.34  Aligned_cols=170  Identities=16%  Similarity=0.246  Sum_probs=93.9

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcc-cCCCCCcccccccCCCCCCCEEEccC-CcCCccccccC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSL  151 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l  151 (263)
                      ..++.+++++|.+..     +.+..|..+++|++|++++|. +++..+..    +..+++|++|++++ |.+++..+..|
T Consensus        31 ~~l~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT-----IPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             TTCCEEEEESCCCSE-----ECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CcccEEEEeCCcceE-----ECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            357777887777653     223345666666666666665 54433322    45555666666665 55554434455


Q ss_pred             CCCCCCCEEEcCCCcCCC-------------------------CcCccccCCCCCCC-EEEcCCCCCCCCCchhhhcCCC
Q 024731          152 GGLSSLRNLSLIGNRLIG-------------------------SIDIKGLDSLGNLE-ELDMSDNAINNLVIPKELHNFT  205 (263)
Q Consensus       152 ~~l~~L~~L~L~~n~l~~-------------------------~~p~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~l~  205 (263)
                      .++++|++|++++|.+++                         .+|...+..+++|+ +|++++|.++. ++...+.. +
T Consensus       102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~  179 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-T  179 (239)
T ss_dssp             ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-C
T ss_pred             CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-C
Confidence            555555555555554442                         22222455555666 66666666653 44432333 5


Q ss_pred             CCcEEEcCCCC-CCcccchhhhhcC-CCCCEEEecCcccccccCccchhcHHH
Q 024731          206 NLEELILDDSD-LHISQLLQSIASF-TSLKYLSMGFCTLTGALHGQGKLRVSE  256 (263)
Q Consensus       206 ~L~~L~l~~n~-l~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~l~~L~~  256 (263)
                      +|++|++++|+ +++.. +..+..+ ++|++|++++|+++ .+|...+.+|++
T Consensus       180 ~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~  230 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE  230 (239)
T ss_dssp             EEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSE
T ss_pred             CCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCccc-cCChhHhccCce
Confidence            66666666663 55333 4556666 66777777777776 344434444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.9e-19  Score=143.85  Aligned_cols=148  Identities=20%  Similarity=0.290  Sum_probs=126.7

Q ss_pred             CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN  132 (263)
Q Consensus        62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~  132 (263)
                      |.|..+.|...         ...++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    |..+++
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l~~   81 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV-----IPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGLRS   81 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECCSSCCCEECTTT----TTTCSS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC-----cCHhHhhCCCCCCEEECCCCcCCCcCHHH----hhCCcC
Confidence            78899999752         2368999999999863     34557899999999999999999876654    899999


Q ss_pred             CCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEc
Q 024731          133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL  212 (263)
Q Consensus       133 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  212 (263)
                      |++|+|++|.++...+..|.++++|++|++++|.+.+..|. .+..+++|++|++++|.+++. ++..+..+++|++|++
T Consensus        82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEe
Confidence            99999999999966666789999999999999999876665 899999999999999999984 4445899999999999


Q ss_pred             CCCCCCcc
Q 024731          213 DDSDLHIS  220 (263)
Q Consensus       213 ~~n~l~~~  220 (263)
                      ++|++...
T Consensus       160 ~~N~~~c~  167 (220)
T 2v9t_B          160 AQNPFICD  167 (220)
T ss_dssp             CSSCEECS
T ss_pred             CCCCcCCC
Confidence            99998643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.82  E-value=6.2e-20  Score=173.48  Aligned_cols=176  Identities=19%  Similarity=0.225  Sum_probs=143.7

Q ss_pred             CCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC
Q 024731           62 CQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN  141 (263)
Q Consensus        62 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n  141 (263)
                      |.|..|.+  ...+++.||+++|.+..     +.+..|..+++|++|++++|...+.+++   ..+.++++|++|+|++|
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~-----i~~~~~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRT-----VTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCE-----ECSSSCSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTC
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCc-----cChhHCcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCC
Confidence            56777766  45789999999999853     3456789999999999999977666533   24899999999999999


Q ss_pred             cCCccccccCCCCCCCCEEEcCCCcCCCCcCc-cccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731          142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS  220 (263)
Q Consensus       142 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  220 (263)
                      .+++..|..|+++++|++|++++|.+.+.+|. ..+..+++|++|++++|.+++..+...++++++|++|++++|.+++.
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            99988899999999999999999999876654 13889999999999999998865544589999999999999999876


Q ss_pred             cchhhhhcC--CCCCEEEecCcccccccCc
Q 024731          221 QLLQSIASF--TSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       221 ~~~~~l~~l--~~L~~L~l~~n~l~~~~p~  248 (263)
                      . +..+..+  ++|+.|++++|.+++..|.
T Consensus       164 ~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~  192 (844)
T 3j0a_A          164 C-EHELEPLQGKTLSFFSLAANSLYSRVSV  192 (844)
T ss_dssp             C-SGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred             C-HHHcccccCCccceEECCCCcccccccc
Confidence            6 6767665  6677777777777665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=3.5e-19  Score=162.30  Aligned_cols=166  Identities=16%  Similarity=0.151  Sum_probs=139.6

Q ss_pred             EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCC
Q 024731           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (263)
Q Consensus        78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  157 (263)
                      .++.+++++...+.     . +  .+++++|++++|.+++..+..    +.++++|++|++++|.+++..|..|.++++|
T Consensus        15 ~~~c~~~~l~~ip~-----~-~--~~~l~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L   82 (606)
T 3vq2_A           15 TYQCMDQKLSKVPD-----D-I--PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHL   82 (606)
T ss_dssp             EEECTTSCCSSCCT-----T-S--CTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             ceEccCCCcccCCC-----C-C--CCCcCEEECCCCCcCEeChhh----ccCCccCcEEeCCCCcccccCHHHhhchhhc
Confidence            46667766653221     1 2  278999999999998877653    8999999999999999998888899999999


Q ss_pred             CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM  237 (263)
Q Consensus       158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  237 (263)
                      ++|++++|.+++..|. .+.++++|++|++++|.+++..+.. ++++++|++|++++|.+++..+|..++++++|++|++
T Consensus        83 ~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L  160 (606)
T 3vq2_A           83 SNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL  160 (606)
T ss_dssp             CEEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred             CEeECCCCcccccChh-hcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence            9999999999876676 8999999999999999999854344 9999999999999999986333899999999999999


Q ss_pred             cCcccccccCccchhcHHHHH
Q 024731          238 GFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       238 ~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      ++|++++..|. .+..+++|.
T Consensus       161 s~n~l~~~~~~-~~~~l~~L~  180 (606)
T 3vq2_A          161 SYNYIQTITVN-DLQFLRENP  180 (606)
T ss_dssp             CSSCCCEECTT-TTHHHHHCT
T ss_pred             cCCcceecChh-hhhhhhccc
Confidence            99999976565 677776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=1e-19  Score=165.87  Aligned_cols=162  Identities=25%  Similarity=0.316  Sum_probs=107.5

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .++.++++++.+..     +.+..|..+++|++|++++|.++.. |..    +..+++|++|++++|.+++..|..+..+
T Consensus       255 ~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~l-p~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          255 SVESINLQKHYFFN-----ISSNTFHCFSGLQELDLTATHLSEL-PSG----LVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             EEEEEECTTCCCSS-----CCTTTTTTCTTCSEEECTTSCCSCC-CSS----CCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             ceeEEEeecCccCc-----cCHHHhccccCCCEEeccCCccCCC-Chh----hcccccCCEEECccCCcCcCchhhhhcc
Confidence            67888888887753     3345577788888888888887743 332    6777788888888888776666677777


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCC--chhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLV--IPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      ++|++|++++|.+.+.+|...+..+++|++|++++|.+.+..  +.. +..+++|++|++++|++.+.. +..+..+++|
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L  402 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLK-TEAFKECPQL  402 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCSCEEEC-TTTTTTCTTC
T ss_pred             CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh-cccCCCCCEEECCCCcCCcCC-HHHhcCCccC
Confidence            777777777777766666545666777777777777666532  222 566666666666666665444 5555666666


Q ss_pred             CEEEecCcccccccCc
Q 024731          233 KYLSMGFCTLTGALHG  248 (263)
Q Consensus       233 ~~L~l~~n~l~~~~p~  248 (263)
                      ++|++++|.+++..|.
T Consensus       403 ~~L~l~~n~l~~~~~~  418 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQ  418 (606)
T ss_dssp             SEEECTTCCEECCTTC
T ss_pred             CeEECCCCcCCCcccc
Confidence            6666666666554443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.81  E-value=1.1e-20  Score=175.69  Aligned_cols=208  Identities=19%  Similarity=0.127  Sum_probs=75.5

Q ss_pred             CCcHHHHHHHHHHhhhCC-CCCCCCCCCcCCCCCCCCCCCCceEEcCCCCcEEEEecCCCCCccccc-------------
Q 024731           26 GCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAE-------------   91 (263)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~-------------   91 (263)
                      +..+.++++|++++.+.. ..+.....|.  ......+.|.++.+.  ..+++.+++.++.+...+.             
T Consensus       128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i  203 (727)
T 4b8c_D          128 SLVDCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVS--TPLTPKIELFANGKDEANQALLQHKKLSQYSI  203 (727)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred             hccccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceec--CCccceEEeeCCCCCcchhhHhhcCccCcccc
Confidence            345667899999998876 3333455676  344556788888775  3567777777666542111             


Q ss_pred             ---------cccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEc
Q 024731           92 ---------WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL  162 (263)
Q Consensus        92 ---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  162 (263)
                               ..+.+..+..++.|+.|+|++|.+....+.     +..+++|++|+|++|.++ .+|..|+++++|++|+|
T Consensus       204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  277 (727)
T 4b8c_D          204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-----IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL  277 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCSCCCGG-----GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred             cCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-----hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence                     001122334444455555555544422211     224444555555555554 44444444555555555


Q ss_pred             CCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC-CCEEEecCcc
Q 024731          163 IGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS-LKYLSMGFCT  241 (263)
Q Consensus       163 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~-L~~L~l~~n~  241 (263)
                      ++|.++ .+|. .+..+++|++|+|++|.++. +|.. ++.+++|++|+|++|.+++.+ |..+..+.. +..+++++|.
T Consensus       278 s~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~-lp~~-~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~~~~~l~l~~N~  352 (727)
T 4b8c_D          278 SHNRLT-SLPA-ELGSCFQLKYFYFFDNMVTT-LPWE-FGNLCNLQFLGVEGNPLEKQF-LKILTEKSVTGLIFYLRDNR  352 (727)
T ss_dssp             TTSCCS-SCCS-SGGGGTTCSEEECCSSCCCC-CCSS-TTSCTTCCCEECTTSCCCSHH-HHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCcCC-ccCh-hhcCCCCCCEEECCCCCCCc-cChh-hhcCCCccEEeCCCCccCCCC-hHHHhhcchhhhHHhhccCc
Confidence            555544 3443 44444555555555554442 3433 444555555555555554443 443332211 1123444555


Q ss_pred             cccccCc
Q 024731          242 LTGALHG  248 (263)
Q Consensus       242 l~~~~p~  248 (263)
                      ++|.+|.
T Consensus       353 l~~~~p~  359 (727)
T 4b8c_D          353 PEIPLPH  359 (727)
T ss_dssp             CCCCCCC
T ss_pred             ccCcCcc
Confidence            5544444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=2.2e-19  Score=163.65  Aligned_cols=134  Identities=19%  Similarity=0.230  Sum_probs=92.2

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .++.++++++.+..     +++..+..+++|++|++++|.+++..+..    +..+++|++|+|++|.+++..|..|+++
T Consensus        52 ~l~~l~l~~~~l~~-----lp~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           52 NQKIVTFKNSTMRK-----LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             CCSEEEESSCEESE-----ECTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CceEEEeeCCCCCC-----cCHHHHccCCCCcEEECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            34556666665532     34455677777888888888777665543    6777788888888888877666677778


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCc
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHI  219 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  219 (263)
                      ++|++|++++|.+++ +|...+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++
T Consensus       123 ~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          123 PLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSB
T ss_pred             CCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCC
Confidence            888888888887763 4443567777888888888877774433 36777777777777776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=3.3e-19  Score=154.22  Aligned_cols=111  Identities=22%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.++++++.+..     +.+..|..+++|++|++++|.+++..+..    +..+++|++|++++|.++...+..|.+
T Consensus        69 ~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~  139 (390)
T 3o6n_A           69 RQVELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHN  139 (390)
T ss_dssp             CCCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCcEEECCCCcccc-----cChhhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcC
Confidence            357778888877643     23345666777777777777776655542    566666666666666666333333466


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINN  194 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  194 (263)
                      +++|++|++++|.+.+..+. .+..+++|++|++++|.+++
T Consensus       140 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCc
Confidence            66666666666666543333 55566666666666665543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=2e-20  Score=151.21  Aligned_cols=132  Identities=13%  Similarity=0.162  Sum_probs=100.5

Q ss_pred             ccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCC---EEEccCC-cCCccccccCCCCCCCC-EEEcCCCcCCCCc
Q 024731           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK---FLYLDYN-HFNNSIFSSLGGLSSLR-NLSLIGNRLIGSI  171 (263)
Q Consensus        97 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~  171 (263)
                      ..|..+++|++|++++|.+++ +|.     +..+++|+   +|++++| .+++..+..|.++++|+ +|++++|.++ .+
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i  171 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV  171 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EE
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-cc
Confidence            345566666666666666655 232     55666666   8888888 88766566789999999 9999999988 67


Q ss_pred             CccccCCCCCCCEEEcCCCC-CCCCCchhhhcCC-CCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcc
Q 024731          172 DIKGLDSLGNLEELDMSDNA-INNLVIPKELHNF-TNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT  241 (263)
Q Consensus       172 p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  241 (263)
                      |...+.. ++|++|++++|. +++ +++..+..+ ++|+.|++++|++++ + |..  .+++|+.|+++++.
T Consensus       172 ~~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~-l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          172 QGYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTA-L-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTTTTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCC-C-CCT--TCTTCSEEECTTC-
T ss_pred             CHhhcCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCcccc-C-Chh--HhccCceeeccCcc
Confidence            7644544 899999999995 886 555558889 999999999999984 4 433  68899999998764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=2.4e-19  Score=147.96  Aligned_cols=149  Identities=16%  Similarity=0.120  Sum_probs=126.5

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  182 (263)
                      +++++|++++|.+++..+..    +..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+. .+..+++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTT----TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTC
T ss_pred             CCccEEECCCCcccccCHhH----hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccc
Confidence            47999999999998776643    88999999999999999977777899999999999999999865554 89999999


Q ss_pred             CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      ++|++++|.+.+..+. .+..+++|++|++++|.+++..+|..++.+++|++|++++|++++..+. .+..+++|.
T Consensus       103 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~  176 (276)
T 2z62_A          103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMP  176 (276)
T ss_dssp             CEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCT
T ss_pred             cEEECCCCCccccCch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-Hhhhhhhcc
Confidence            9999999999985433 3899999999999999998643388999999999999999999965444 565555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=3.1e-19  Score=158.24  Aligned_cols=164  Identities=18%  Similarity=0.185  Sum_probs=130.5

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      -.+++.|++++|.+..     +.+..|..+++|++|++++|.+++..+..    |..+++|++|++++|.+++..+..|.
T Consensus        55 l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~  125 (477)
T 2id5_A           55 FPHLEELELNENIVSA-----VEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQ  125 (477)
T ss_dssp             CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCCCCEEECCCCccCE-----eChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcc
Confidence            3478899999998753     33556889999999999999998766543    78899999999999999988888899


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      ++++|++|++++|.+.+..+. .+..+++|++|++++|.+++ ++...+..+++|+.|++++|.+.+.. +..+..+++|
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L  202 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRL  202 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEEC-TTCSCSCTTC
T ss_pred             ccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeC-hhhcccCccc
Confidence            999999999999998865554 78889999999999999887 45555888888888888888887654 5667777777


Q ss_pred             CEEEecCcccccccCc
Q 024731          233 KYLSMGFCTLTGALHG  248 (263)
Q Consensus       233 ~~L~l~~n~l~~~~p~  248 (263)
                      ++|++++|.+.+.+|.
T Consensus       203 ~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          203 KVLEISHWPYLDTMTP  218 (477)
T ss_dssp             CEEEEECCTTCCEECT
T ss_pred             ceeeCCCCccccccCc
Confidence            7777766655555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=3.8e-19  Score=152.47  Aligned_cols=163  Identities=22%  Similarity=0.189  Sum_probs=130.6

Q ss_pred             EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccC-CCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      .++++++++....     .. +  .+.++.|++++|.+++..+..    +. .+++|++|+|++|++++..+..|.++++
T Consensus        22 ~l~c~~~~l~~iP-----~~-~--~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   89 (361)
T 2xot_A           22 ILSCSKQQLPNVP-----QS-L--PSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFISSEAFVPVPN   89 (361)
T ss_dssp             EEECCSSCCSSCC-----SS-C--CTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             EEEeCCCCcCccC-----cc-C--CCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCccChhhccCCCC
Confidence            6889998875432     11 2  246899999999998876653    66 8999999999999999777788999999


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhh---hcCCCCC
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSI---ASFTSLK  233 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l---~~l~~L~  233 (263)
                      |++|+|++|++.+ ++...+..+++|++|+|++|.+++..+. .+..+++|++|++++|++++.. +..+   ..+++|+
T Consensus        90 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~  166 (361)
T 2xot_A           90 LRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLM  166 (361)
T ss_dssp             CCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCC
T ss_pred             CCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCC
Confidence            9999999999985 4444789999999999999999985444 4999999999999999998643 4445   6799999


Q ss_pred             EEEecCcccccccCccchhcHHH
Q 024731          234 YLSMGFCTLTGALHGQGKLRVSE  256 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~~~l~~L~~  256 (263)
                      .|++++|+++ .+|...+..+..
T Consensus       167 ~L~L~~N~l~-~l~~~~~~~l~~  188 (361)
T 2xot_A          167 LLDLSSNKLK-KLPLTDLQKLPA  188 (361)
T ss_dssp             EEECCSSCCC-CCCHHHHHHSCH
T ss_pred             EEECCCCCCC-ccCHHHhhhccH
Confidence            9999999999 466434444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=5.4e-19  Score=159.78  Aligned_cols=164  Identities=22%  Similarity=0.267  Sum_probs=140.7

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      ..+++.+++++|.+..     +.+..|..+++|++|++++|.+++..+..    |.++++|++|++++|.+++..|..|+
T Consensus        27 ~~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS   97 (570)
T ss_dssp             CSSCCEEECCSCCCCE-----ECTTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             cccccEEEccCCccCc-----cChhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhc
Confidence            3468899999999864     33456899999999999999998766653    88999999999999999987788999


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC-CchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS  231 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  231 (263)
                      ++++|++|++++|.+.+. +...++.+++|++|++++|.+++. +|.. ++++++|++|++++|++++.. +..++.+++
T Consensus        98 ~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~  174 (570)
T 2z63_A           98 GLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQ  174 (570)
T ss_dssp             TCTTCCEEECTTSCCCCS-TTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEEC-GGGGHHHHT
T ss_pred             CccccccccccccccccC-CCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceec-HHHccchhc
Confidence            999999999999998854 433689999999999999999873 4665 999999999999999998765 778888888


Q ss_pred             C----CEEEecCcccccccCc
Q 024731          232 L----KYLSMGFCTLTGALHG  248 (263)
Q Consensus       232 L----~~L~l~~n~l~~~~p~  248 (263)
                      |    +.+++++|.+++..|.
T Consensus       175 L~~~~~~L~l~~n~l~~~~~~  195 (570)
T 2z63_A          175 MPLLNLSLDLSLNPMNFIQPG  195 (570)
T ss_dssp             CTTCCCEEECTTCCCCEECTT
T ss_pred             cchhhhhcccCCCCceecCHH
Confidence            8    8999999999976554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=2.5e-20  Score=156.56  Aligned_cols=162  Identities=17%  Similarity=0.111  Sum_probs=85.4

Q ss_pred             cEEEEecCCCCCccccccccccccc--cCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLF--TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      +++++++++|.+....     +..+  ..+++|++|++++|.+++..+......+..+++|++|++++|.+++..+..++
T Consensus        92 ~L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           92 RLKELTLEDLKITGTM-----PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCCEEEEESCCCBSCC-----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ceeEEEeeCCEeccch-----hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            3677777777764322     2223  56667777777777776544421111234566667777777766655556666


Q ss_pred             CCCCCCEEEcCCCcCCCC--c-CccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCCCcccchhhh
Q 024731          153 GLSSLRNLSLIGNRLIGS--I-DIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDLHISQLLQSI  226 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~--~-p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l  226 (263)
                      .+++|++|++++|++.+.  + +...+..+++|++|++++|.++. ++.   ..++.+++|++|++++|++++.. |..+
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~  244 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATV-NPSA  244 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC-CSCC
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccc-hhhH
Confidence            666677777766665431  1 11122345555555555555543 111   01234455555555555555443 3334


Q ss_pred             hcC---CCCCEEEecCcccc
Q 024731          227 ASF---TSLKYLSMGFCTLT  243 (263)
Q Consensus       227 ~~l---~~L~~L~l~~n~l~  243 (263)
                      ..+   ++|++|++++|+++
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC
T ss_pred             HhccCcCcCCEEECCCCCCC
Confidence            333   35555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=2.9e-19  Score=161.54  Aligned_cols=144  Identities=23%  Similarity=0.253  Sum_probs=125.2

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC-CCcCccccC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI-GSIDIKGLD  177 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~  177 (263)
                      +..+++|++|++++|.+.+..+..   .+..+++|++|++++|.+++..|..+.++++|++|++++|.+. +.+|. .+.
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~  467 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFT  467 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCT
T ss_pred             ccccCCCCEEEccCCccccccchh---hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh-hhh
Confidence            677888888888888887765532   3788999999999999999888889999999999999999987 46776 889


Q ss_pred             CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      .+++|++|++++|.+++..|.. +..+++|++|++++|++++.. +..+..+++|++|++++|++++.+|.
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccCCCEEECCCCccccCChhh-hhcccCCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999999999855554 899999999999999998766 77889999999999999999998886

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=161.46  Aligned_cols=135  Identities=19%  Similarity=0.217  Sum_probs=67.5

Q ss_pred             cCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc--cccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN--SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (263)
Q Consensus       100 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (263)
                      ..+++|++|++++|.+++..|..    +..+++|++|++++|++++  .+|..++.+++|++|++++|.+.+.+|...+.
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             hhCCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence            44555555555555555544432    4555555555555555553  33444555555555555555555434442344


Q ss_pred             CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731          178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      .+++|++|++++|.+++..+.. +.  ++|++|++++|+++ .+ |..+..+++|++|++++|+++
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~-~i-p~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIK-SI-PKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCC-CC-CGGGGGCTTCCEEECCSSCCC
T ss_pred             cCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCccc-cc-chhhhcCCCCCEEECCCCcCC
Confidence            4555555555555554433222 21  34555555555554 33 444444555555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=7.8e-19  Score=147.33  Aligned_cols=148  Identities=25%  Similarity=0.387  Sum_probs=88.9

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.+++++|.+....     +  +..+++|++|++++|.+++. +     .+..+++|++|++++|.+++ ++. +..
T Consensus        63 ~~L~~L~L~~n~i~~~~-----~--~~~l~~L~~L~L~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~-~~~-l~~  127 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLA-----P--LKNLTKITELELSGNPLKNV-S-----AIAGLQSIKTLDLTSTQITD-VTP-LAG  127 (308)
T ss_dssp             TTCCEEECCSSCCCCCG-----G--GTTCCSCCEEECCSCCCSCC-G-----GGTTCTTCCEEECTTSCCCC-CGG-GTT
T ss_pred             CCCCEEEccCCcCCCCh-----h--HccCCCCCEEEccCCcCCCc-h-----hhcCCCCCCEEECCCCCCCC-chh-hcC
Confidence            35667777777664321     1  56667777777777776653 2     15666667777777776664 232 666


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+.+ ++  .+..+++|++|++++|.+++ ++.  +..+++|++|++++|++++.. +  +..+++|+
T Consensus       128 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~-~--l~~l~~L~  198 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITN-IS--PLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKISDIS-P--LASLPNLI  198 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG-G--GGGCTTCC
T ss_pred             CCCCCEEECCCCccCc-Cc--cccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccCcCh-h--hcCCCCCC
Confidence            6666666666666653 22  25566666666666666665 222  556666666666666665322 2  55666666


Q ss_pred             EEEecCcccccc
Q 024731          234 YLSMGFCTLTGA  245 (263)
Q Consensus       234 ~L~l~~n~l~~~  245 (263)
                      +|++++|++++.
T Consensus       199 ~L~L~~N~l~~~  210 (308)
T 1h6u_A          199 EVHLKNNQISDV  210 (308)
T ss_dssp             EEECTTSCCCBC
T ss_pred             EEEccCCccCcc
Confidence            666666666643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=8.7e-20  Score=153.36  Aligned_cols=37  Identities=24%  Similarity=0.187  Sum_probs=15.9

Q ss_pred             CCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcC
Q 024731          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL  167 (263)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  167 (263)
                      ++|++|++++|++++..|..++++++|++|++++|++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE  185 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence            3444444444444433334444444444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=2.3e-19  Score=151.07  Aligned_cols=148  Identities=18%  Similarity=0.206  Sum_probs=119.9

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC-CCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~~l  179 (263)
                      .+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +  ....+
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~l  190 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--GQVVF  190 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBC----TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--CCCCC
T ss_pred             ccCCCCEEECCCCCCCCccchh----hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c--ccccc
Confidence            4678889999999888766543    6778999999999999997777766 4789999999999998754 4  34468


Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc-cccCccchhcHHHHH
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT-GALHGQGKLRVSEAF  258 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~l~~L~~L~  258 (263)
                      ++|++|++++|.+++ +++. +..+++|++|++++|+++ .+ |..+..+++|+.|++++|+++ +.+|. .+..+++|+
T Consensus       191 ~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~L~~N~l~-~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~  265 (317)
T 3o53_A          191 AKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLV-LI-EKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQ  265 (317)
T ss_dssp             TTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCC-EE-CTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHH
T ss_pred             ccCCEEECCCCcCCc-chhh-hcccCcccEEECcCCccc-ch-hhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccce
Confidence            999999999999988 5665 888999999999999998 45 778899999999999999998 55555 555555555


Q ss_pred             HH
Q 024731          259 MI  260 (263)
Q Consensus       259 ~~  260 (263)
                      .+
T Consensus       266 ~l  267 (317)
T 3o53_A          266 TV  267 (317)
T ss_dssp             HH
T ss_pred             EE
Confidence            43

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=2.3e-20  Score=156.95  Aligned_cols=144  Identities=20%  Similarity=0.161  Sum_probs=117.7

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC-----CCCCEEEcCCCcCCCCcCccc
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRLIGSIDIKG  175 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~~  175 (263)
                      .+++|++|++++|.+++..|...+  +..+++|++|++++|.+++. |..++.+     ++|++|++++|++.+..|. .
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~  168 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-Q  168 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-T
T ss_pred             CcCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-H
Confidence            589999999999999988776411  28899999999999999976 7777766     9999999999999876555 8


Q ss_pred             cCCCCCCCEEEcCCCCCCCCC--chh-hhcCCCCCcEEEcCCCCCCc--ccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          176 LDSLGNLEELDMSDNAINNLV--IPK-ELHNFTNLEELILDDSDLHI--SQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       176 ~~~l~~L~~L~L~~n~l~~~~--~~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +..+++|++|++++|.+.+.+  +.. .+..+++|++|++++|++++  ......+..+++|++|++++|++++.+|.
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  246 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA  246 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred             hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence            999999999999999987642  222 12788999999999999984  22124456789999999999999987654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.2e-18  Score=145.00  Aligned_cols=147  Identities=25%  Similarity=0.333  Sum_probs=104.3

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.+++++|.+....     +  +..+++|++|++++|.+++. +.     +..+++|++|++++|.+++.  ..+..
T Consensus        68 ~~L~~L~L~~n~l~~~~-----~--l~~l~~L~~L~l~~n~l~~~-~~-----l~~l~~L~~L~L~~n~i~~~--~~l~~  132 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIK-----P--LANLKNLGWLFLDENKVKDL-SS-----LKDLKKLKSLSLEHNGISDI--NGLVH  132 (291)
T ss_dssp             TTCCEEECCSSCCCCCG-----G--GTTCTTCCEEECCSSCCCCG-GG-----GTTCTTCCEEECTTSCCCCC--GGGGG
T ss_pred             CCCCEEEccCCccCCCc-----c--cccCCCCCEEECCCCcCCCC-hh-----hccCCCCCEEECCCCcCCCC--hhhcC
Confidence            45777777777764321     1  67777888888888877653 22     67777888888888887752  45677


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+++.  . .+..+++|++|++++|.+++. ++  +..+++|++|++++|.+++ + + .+..+++|+
T Consensus       133 l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~-~~--l~~l~~L~~L~L~~N~i~~-l-~-~l~~l~~L~  203 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLSKNHISD-L-R-ALAGLKNLD  203 (291)
T ss_dssp             CTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCB-C-G-GGTTCTTCS
T ss_pred             CCCCCEEEccCCcCCcc--h-hhccCCCCCEEEccCCccccc-hh--hcCCCccCEEECCCCcCCC-C-h-hhccCCCCC
Confidence            77888888888877643  2 677778888888888887773 32  6777888888888888764 3 3 377788888


Q ss_pred             EEEecCccccc
Q 024731          234 YLSMGFCTLTG  244 (263)
Q Consensus       234 ~L~l~~n~l~~  244 (263)
                      .|++++|+++.
T Consensus       204 ~L~l~~n~i~~  214 (291)
T 1h6t_A          204 VLELFSQECLN  214 (291)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEECcCCcccC
Confidence            88888887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.79  E-value=4.1e-19  Score=135.78  Aligned_cols=139  Identities=23%  Similarity=0.249  Sum_probs=117.1

Q ss_pred             CCcCCcEEEccCcccC-CCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731          101 PFQQLESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  179 (263)
                      ..++|++|++++|.++ +.+|..    +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|. .+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL----TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL   94 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC----CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred             CcccCCEEECCCCCCChhhHHHH----HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence            4578999999999997 556653    67889999999999999865  7889999999999999999876775 77779


Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccch---hhhhcCCCCCEEEecCcccccccCc
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++|++|++++|.+++......+..+++|++|++++|.+++.. +   ..+..+++|++|++++|.+. .+|.
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            999999999999988322134899999999999999998654 4   47899999999999999987 5665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=2.3e-19  Score=153.24  Aligned_cols=171  Identities=21%  Similarity=0.207  Sum_probs=138.3

Q ss_pred             CceEEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCC
Q 024731           65 ERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN  144 (263)
Q Consensus        65 ~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  144 (263)
                      ....|..  ..+  .+.+++++...+     .. +  .++|++|++++|.+++..+..    +..+++|++|++++|.++
T Consensus        26 ~~~~C~~--~~~--c~~~~~~l~~iP-----~~-~--~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~   89 (353)
T 2z80_A           26 ASLSCDR--NGI--CKGSSGSLNSIP-----SG-L--TEAVKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGIN   89 (353)
T ss_dssp             -CCEECT--TSE--EECCSTTCSSCC-----TT-C--CTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCC--CeE--eeCCCCCccccc-----cc-c--cccCcEEECCCCcCcccCHHH----hccCCCCCEEECCCCccC
Confidence            4567754  233  788888876432     21 2  258999999999998766543    889999999999999999


Q ss_pred             ccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCch-hhhcCCCCCcEEEcCCCC-CCcccc
Q 024731          145 NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP-KELHNFTNLEELILDDSD-LHISQL  222 (263)
Q Consensus       145 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~  222 (263)
                      +..|..|.++++|++|++++|.+++ +|...+..+++|++|++++|.+++ ++. ..+..+++|++|++++|. +.... 
T Consensus        90 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~-  166 (353)
T 2z80_A           90 TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQ-  166 (353)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEEC-
T ss_pred             ccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccC-
Confidence            8778889999999999999999985 665468999999999999999987 555 448899999999999995 65444 


Q ss_pred             hhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731          223 LQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS  255 (263)
Q Consensus       223 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~  255 (263)
                      +..++.+++|++|++++|.+++..|. .+.+++
T Consensus       167 ~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~  198 (353)
T 2z80_A          167 RKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQ  198 (353)
T ss_dssp             TTTTTTCCEEEEEEEEETTCCEECTT-TTTTCS
T ss_pred             HHHccCCCCCCEEECCCCCcCccCHH-HHhccc
Confidence            77899999999999999999987676 444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.79  E-value=9.9e-19  Score=136.75  Aligned_cols=132  Identities=19%  Similarity=0.201  Sum_probs=104.8

Q ss_pred             EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      +.++++++++....     .. +  ..++++|++++|.+++..+..   .+..+++|++|+|++|.+++..|..|.++++
T Consensus        11 ~~l~~s~~~l~~ip-----~~-~--~~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP-----RD-I--PLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSSCC-----SC-C--CTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEcCCCCcCcCc-----cC-C--CCCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            46888988875432     21 2  238899999999988766531   2678889999999999999887888999999


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ  221 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  221 (263)
                      |++|++++|++++..+. .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..
T Consensus        80 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           80 IQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCCSG
T ss_pred             CCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccCcC
Confidence            99999999998865554 7888999999999999998855554 888899999999999988664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=1.9e-20  Score=171.84  Aligned_cols=149  Identities=13%  Similarity=0.152  Sum_probs=125.8

Q ss_pred             cccccCCcCCcEEEccCcccCCC-----------------CCcccccccC--CCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           96 ASLFTPFQQLESLYLIGNNIAGC-----------------VENEGLDTLS--RLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        96 ~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      +..++++++|++|++++|.+++.                 +|..    +.  ++++|++|++++|.+.+.+|..++++++
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~----l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED----LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC----CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh----hhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            44588999999999999999984                 5543    77  8999999999999999999999999999


Q ss_pred             CCEEEcCCCc-CCC-CcCccccCCC------CCCCEEEcCCCCCCCCCch--hhhcCCCCCcEEEcCCCCCCcccchhhh
Q 024731          157 LRNLSLIGNR-LIG-SIDIKGLDSL------GNLEELDMSDNAINNLVIP--KELHNFTNLEELILDDSDLHISQLLQSI  226 (263)
Q Consensus       157 L~~L~L~~n~-l~~-~~p~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l  226 (263)
                      |++|++++|+ +++ .+|. .+..+      ++|++|++++|.++ .+|.  . ++++++|++|++++|+++|.+ | .+
T Consensus       275 L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g~i-p-~~  349 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEGKL-P-AF  349 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEEEC-C-CC
T ss_pred             CCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCccch-h-hh
Confidence            9999999998 887 7886 66665      89999999999998 4776  5 899999999999999998777 6 78


Q ss_pred             hcCCCCCEEEecCcccccccCccchhcHH
Q 024731          227 ASFTSLKYLSMGFCTLTGALHGQGKLRVS  255 (263)
Q Consensus       227 ~~l~~L~~L~l~~n~l~~~~p~~~l~~L~  255 (263)
                      +.+++|++|++++|.++ .+|. .+.+++
T Consensus       350 ~~l~~L~~L~L~~N~l~-~lp~-~l~~l~  376 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT-EIPA-NFCGFT  376 (636)
T ss_dssp             EEEEEESEEECCSSEEE-ECCT-TSEEEC
T ss_pred             CCCCCCCEEECCCCccc-cccH-hhhhhc
Confidence            88888888888888887 6776 344433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=2.8e-19  Score=161.07  Aligned_cols=160  Identities=23%  Similarity=0.191  Sum_probs=134.3

Q ss_pred             EecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCC
Q 024731           79 LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR  158 (263)
Q Consensus        79 l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  158 (263)
                      .|.+++++...+     .. +  .++|++|++++|.+++..+..    +..+++|++|++++|.+++..|..|+++++|+
T Consensus        10 c~~~~~~l~~ip-----~~-~--~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A           10 CDGRSRSFTSIP-----SG-L--TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             EECTTSCCSSCC-----SC-C--CTTCCEEECCSSCCCEECSST----TSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             EECCCCcccccc-----cc-C--CCCccEEECcCCccCccChhh----hhcCCcccEEECCCCCcCccChhhccccccCC
Confidence            688888775432     22 2  278999999999998877654    89999999999999999988888999999999


Q ss_pred             EEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC-CchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731          159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL-VIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSM  237 (263)
Q Consensus       159 ~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  237 (263)
                      +|++++|.+.+..|. .+..+++|++|++++|.+++. .+.. ++++++|++|++++|.+.+.+.+..+..+++|++|++
T Consensus        78 ~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           78 HLDLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             EEECTTSCCCSCCHH-HHTTCTTCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             EEECCCCccCccCHH-HhccCCCCcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence            999999999865544 799999999999999999863 3444 8999999999999999655663568999999999999


Q ss_pred             cCcccccccCccchhc
Q 024731          238 GFCTLTGALHGQGKLR  253 (263)
Q Consensus       238 ~~n~l~~~~p~~~l~~  253 (263)
                      ++|.+++.+|. .+.+
T Consensus       156 ~~n~l~~~~~~-~l~~  170 (549)
T 2z81_A          156 KALSLRNYQSQ-SLKS  170 (549)
T ss_dssp             EETTCCEECTT-TTTT
T ss_pred             cCCcccccChh-hhhc
Confidence            99999988877 4443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=1.9e-18  Score=144.98  Aligned_cols=150  Identities=23%  Similarity=0.287  Sum_probs=128.0

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.++++++.+...       ..+..+++|++|++++|.+++..+      +..+++|++|++++|.+++ ++ .+..
T Consensus        41 ~~L~~L~l~~~~i~~l-------~~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~-~~-~~~~  105 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-VS-AIAG  105 (308)
T ss_dssp             HTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-CG-GGTT
T ss_pred             CCcCEEEeeCCCccCc-------hhhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCC-ch-hhcC
Confidence            3688999999987532       247889999999999999987543      7889999999999999985 33 6899


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+.+ ++  .+..+++|++|++++|.+++. +.  +..+++|++|++++|++++..  . +..+++|+
T Consensus       106 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~  176 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLT  176 (308)
T ss_dssp             CTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCC
T ss_pred             CCCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCcCCCCh--h-hcCCCCCC
Confidence            9999999999999885 44  588999999999999999884 33  889999999999999998643  3 89999999


Q ss_pred             EEEecCcccccccC
Q 024731          234 YLSMGFCTLTGALH  247 (263)
Q Consensus       234 ~L~l~~n~l~~~~p  247 (263)
                      +|++++|.+++..|
T Consensus       177 ~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          177 TLKADDNKISDISP  190 (308)
T ss_dssp             EEECCSSCCCCCGG
T ss_pred             EEECCCCccCcChh
Confidence            99999999986443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=4.1e-19  Score=158.05  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=116.0

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC-CCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG-GLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~~l  179 (263)
                      .+++|+.|++++|.+++..+..    +..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |  ....+
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~--~~~~l  190 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K--GQVVF  190 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E--CCCCC
T ss_pred             ccCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c--ccccC
Confidence            4577888888888888776643    67788899999999999887777776 788999999999998754 3  34468


Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc-cccCccchhcHHHHH
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT-GALHGQGKLRVSEAF  258 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~l~~L~~L~  258 (263)
                      ++|++|++++|.+++ +|+. +..+++|+.|++++|.+++ + |..+..+++|+.|++++|.+. +.+|. .+..+..|.
T Consensus       191 ~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~~-l-p~~l~~l~~L~~L~l~~N~l~c~~~~~-~~~~l~~L~  265 (487)
T 3oja_A          191 AKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVL-I-EKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQ  265 (487)
T ss_dssp             TTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCCE-E-CTTCCCCTTCCEEECTTCCBCHHHHHH-HHTTCHHHH
T ss_pred             CCCCEEECCCCCCCC-CCHh-HcCCCCccEEEecCCcCcc-c-chhhccCCCCCEEEcCCCCCcCcchHH-HHHhCCCCc
Confidence            899999999999988 5565 8888999999999999984 5 777888899999999999988 55555 444444444


Q ss_pred             H
Q 024731          259 M  259 (263)
Q Consensus       259 ~  259 (263)
                      .
T Consensus       266 ~  266 (487)
T 3oja_A          266 T  266 (487)
T ss_dssp             H
T ss_pred             E
Confidence            3

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=7e-19  Score=159.17  Aligned_cols=161  Identities=19%  Similarity=0.224  Sum_probs=94.1

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccc-cCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLG  152 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~  152 (263)
                      .+++.+++++|.+..     ..+..+..+++|++|++++|.+++..+.  ...+..+++|++|++++|.+++.+|. .+.
T Consensus       353 ~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          353 SSFTFLNFTQNVFTD-----SVFQGCSTLKRLQTLILQRNGLKNFFKV--ALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             CCCCEEECCSSCCCT-----TTTTTCCSCSSCCEEECCSSCCCBTTHH--HHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             CCceEEECCCCcccc-----chhhhhcccCCCCEEECCCCCcCCcccc--hhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence            345566666665532     1123455666666666666666543210  01255666666666666666653443 355


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhh-hhcCCC
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQS-IASFTS  231 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-l~~l~~  231 (263)
                      .+++|++|++++|.+++.+|. .+.  ++|++|++++|.++. +|.. +..+++|++|++++|+++ .+ |.. +..+++
T Consensus       426 ~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~L~L~~N~l~~-ip~~-~~~l~~L~~L~L~~N~l~-~l-~~~~~~~l~~  498 (562)
T 3a79_B          426 WAESILVLNLSSNMLTGSVFR-CLP--PKVKVLDLHNNRIMS-IPKD-VTHLQALQELNVASNQLK-SV-PDGVFDRLTS  498 (562)
T ss_dssp             CCTTCCEEECCSSCCCGGGGS-SCC--TTCSEEECCSSCCCC-CCTT-TTSSCCCSEEECCSSCCC-CC-CTTSTTTCTT
T ss_pred             CcccCCEEECCCCCCCcchhh-hhc--CcCCEEECCCCcCcc-cChh-hcCCCCCCEEECCCCCCC-CC-CHHHHhcCCC
Confidence            666666666666666554443 222  566777777776664 5554 446677777777777776 33 333 666777


Q ss_pred             CCEEEecCcccccccCc
Q 024731          232 LKYLSMGFCTLTGALHG  248 (263)
Q Consensus       232 L~~L~l~~n~l~~~~p~  248 (263)
                      |++|++++|++.+..|.
T Consensus       499 L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          499 LQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCCEECCSCCBCCCHHH
T ss_pred             CCEEEecCCCcCCCcch
Confidence            77777777777665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.7e-18  Score=139.21  Aligned_cols=143  Identities=21%  Similarity=0.226  Sum_probs=118.6

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  183 (263)
                      .-+.++.+++.++..+..     +  .++|++|++++|.+++..|..|..+++|++|++++|.+. .+|...+..+++|+
T Consensus        20 s~~~v~c~~~~l~~ip~~-----~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAG-----I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLT   91 (229)
T ss_dssp             ETTEEECTTSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             eCCEeEccCCCcCccCCC-----C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcC
Confidence            356788888888754432     2  389999999999999888999999999999999999997 45554789999999


Q ss_pred             EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      +|++++|.+++ ++...+..+++|++|++++|+++ .+ |..+..+++|++|++++|++++ +|...+..+++|.
T Consensus        92 ~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~  162 (229)
T 3e6j_A           92 VLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-EL-PRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLT  162 (229)
T ss_dssp             EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SC-CTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             EEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-cc-CcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCC
Confidence            99999999998 55555889999999999999998 56 8889999999999999999995 4443455554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=9.4e-19  Score=148.02  Aligned_cols=89  Identities=25%  Similarity=0.305  Sum_probs=73.0

Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      ++|++|++++|.+.+..|. .+..+++|++|++++|.+++..+. .+..+++|++|++++|+++ .+ |..+..+++|++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~l-p~~l~~l~~L~~  267 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-KV-PGGLADHKYIQV  267 (330)
T ss_dssp             TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCS-SC-CTTTTTCSSCCE
T ss_pred             ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCc-cC-ChhhccCCCcCE
Confidence            4566666666666654454 788999999999999999985443 4899999999999999998 55 788999999999


Q ss_pred             EEecCcccccccCc
Q 024731          235 LSMGFCTLTGALHG  248 (263)
Q Consensus       235 L~l~~n~l~~~~p~  248 (263)
                      |++++|++++ +|.
T Consensus       268 L~l~~N~i~~-~~~  280 (330)
T 1xku_A          268 VYLHNNNISA-IGS  280 (330)
T ss_dssp             EECCSSCCCC-CCT
T ss_pred             EECCCCcCCc-cCh
Confidence            9999999995 444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.78  E-value=2e-18  Score=154.56  Aligned_cols=160  Identities=18%  Similarity=0.172  Sum_probs=134.1

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCC--CCcccccccCCCCCCCEEEccCCcCCccccc-
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC--VENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-  149 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-  149 (263)
                      ...++.+++++|.+..     ..+..+..+++|++|++++|.+++.  .|.    .+..+++|++|++++|.+++.+|. 
T Consensus       323 l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTD-----TVFENCGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             CCCCCEEECCSSCCCT-----TTTTTCCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             CCcccEEEeECCccCh-----hhhhhhccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCCcCCcccccc
Confidence            4568899999998853     1245678999999999999999863  232    378999999999999999975666 


Q ss_pred             cCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchh-hhhc
Q 024731          150 SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ-SIAS  228 (263)
Q Consensus       150 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~l~~  228 (263)
                      .+..+++|++|++++|.+++.+|. .+.  ++|++|++++|.++. +|.. +..+++|++|++++|+++. + |. .+..
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~L~L~~N~l~~-l-~~~~~~~  466 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSNKIKS-IPKQ-VVKLEALQELNVASNQLKS-V-PDGIFDR  466 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSSCCCC-CCGG-GGGCTTCCEEECCSSCCCC-C-CTTTTTT
T ss_pred             hhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCCcccc-cchh-hhcCCCCCEEECCCCcCCc-c-CHHHhcc
Confidence            488899999999999999887775 443  799999999999995 7776 6799999999999999984 5 44 4899


Q ss_pred             CCCCCEEEecCcccccccCc
Q 024731          229 FTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       229 l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +++|++|++++|++++..+.
T Consensus       467 l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          467 LTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CTTCCEEECCSSCBCCCHHH
T ss_pred             CCcccEEECcCCCCcccCCc
Confidence            99999999999999976653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.77  E-value=1.1e-18  Score=130.81  Aligned_cols=131  Identities=23%  Similarity=0.280  Sum_probs=102.6

Q ss_pred             CCcCCcEEEccCcccC-CCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731          101 PFQQLESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  179 (263)
                      ..++++.|++++|.++ +.+|..    +..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|. .+..+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKC   87 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHC
T ss_pred             CCccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhC
Confidence            3467889999999887 555543    67888999999999988855  6788888999999999988876665 66678


Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccch---hhhhcCCCCCEEEecC
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSMGF  239 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l~~  239 (263)
                      ++|++|++++|.+++......+..+++|++|++++|++++.. +   ..+..+++|++|++++
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETTBC
T ss_pred             CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccCCC
Confidence            889999999998887311134888889999999999887654 4   4688888999888763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=3.6e-18  Score=145.23  Aligned_cols=143  Identities=20%  Similarity=0.299  Sum_probs=111.2

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      +..+++|+.|++++|.+.+..+      +..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++  .+..
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~  263 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--AVKD  263 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTT
T ss_pred             ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHhc
Confidence            3444555555555555543322      5678899999999999985433  8889999999999999875 33  6889


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHH
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSE  256 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~  256 (263)
                      +++|++|++++|.+++.  +. +..+++|++|++++|++++.. +..+..+++|++|++++|++++..|-..+.+|++
T Consensus       264 l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~  337 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS  337 (347)
T ss_dssp             CTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGG-HHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSE
T ss_pred             CCCcCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcC-hhHhhccccCCEEEccCCccccccChhhhhccce
Confidence            99999999999999884  33 888999999999999998777 8889999999999999999997666444554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.77  E-value=1.7e-18  Score=159.92  Aligned_cols=119  Identities=24%  Similarity=0.245  Sum_probs=74.4

Q ss_pred             cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCc-------CccccCCCCCCCEEEcCCCCCCCCCchh
Q 024731          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI-------DIKGLDSLGNLEELDMSDNAINNLVIPK  199 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------p~~~~~~l~~L~~L~L~~n~l~~~~~~~  199 (263)
                      +..+++|++|++++|++++..+..+.++++|++|++++|.+++..       |...+..+++|++|++++|.++. +|..
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~  554 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVE  554 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHH
Confidence            556666777777777776555556666777777777777665321       11125566667777777776664 4544


Q ss_pred             hhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccC
Q 024731          200 ELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALH  247 (263)
Q Consensus       200 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p  247 (263)
                      .+..+++|++|++++|++++.. +..+..+++|++|++++|++++..|
T Consensus       555 ~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             HcccccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCccCh
Confidence            4666777777777777776433 4556666777777777777765433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=5.3e-20  Score=154.50  Aligned_cols=160  Identities=16%  Similarity=0.097  Sum_probs=112.9

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcc--cc--c
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS--IF--S  149 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p--~  149 (263)
                      .+++.+++++|.+..... .+....+..+++|++|++++|.+.+..+..    +..+++|++|++++|++.+.  ++  .
T Consensus       117 ~~L~~L~Ls~n~i~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~  191 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRS-WLAELQQWLKPGLKVLSIAQAHSPAFSCEQ----VRAFPALTSLDLSDNPGLGERGLMAAL  191 (310)
T ss_dssp             BCCSSCEEESCCCSSTTS-SHHHHHTTBCSCCCEEEEECCSSCCCCTTS----CCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred             CCCCEEEeecccccchhh-hhHHHHhhhccCCCEEEeeCCCcchhhHHH----hccCCCCCEEECCCCCCccchhhhHHH
Confidence            456778888888753221 011123446888888888888887766653    77888888888888887642  22  2


Q ss_pred             cCCCCCCCCEEEcCCCcCCCCcCc---cccCCCCCCCEEEcCCCCCCCCCchhhhcCC---CCCcEEEcCCCCCCcccch
Q 024731          150 SLGGLSSLRNLSLIGNRLIGSIDI---KGLDSLGNLEELDMSDNAINNLVIPKELHNF---TNLEELILDDSDLHISQLL  223 (263)
Q Consensus       150 ~l~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~  223 (263)
                      .++.+++|++|++++|.++. ++.   ..+..+++|++|++++|.+++..|.. +..+   ++|++|++++|+++ .+ |
T Consensus       192 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~-~l-p  267 (310)
T 4glp_A          192 CPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLE-QV-P  267 (310)
T ss_dssp             CTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCC-SC-C
T ss_pred             hhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCC-ch-h
Confidence            34678888888888888762 332   02456788888888888888865654 5555   68888888888887 45 5


Q ss_pred             hhhhcCCCCCEEEecCccccc
Q 024731          224 QSIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       224 ~~l~~l~~L~~L~l~~n~l~~  244 (263)
                      ..+.  ++|++|++++|++++
T Consensus       268 ~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          268 KGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             SCCC--SCCSCEECCSCCCCS
T ss_pred             hhhc--CCCCEEECCCCcCCC
Confidence            5553  688888888888886

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=3.8e-19  Score=158.26  Aligned_cols=162  Identities=23%  Similarity=0.231  Sum_probs=101.7

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC-------------
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN-------------  141 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-------------  141 (263)
                      +++.|++++|.+..     +.+..|..+++|++|++++|.+++..+      +..+++|++|++++|             
T Consensus        35 ~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~~~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSGNPLSQ-----ISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLVGPSIET  103 (487)
T ss_dssp             GCCEEECCSSCCCC-----CCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             CccEEEeeCCcCCC-----CCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence            45666666665532     223345556666666666666554332      444555555555555             


Q ss_pred             ------cCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhc-CCCCCcEEEcCC
Q 024731          142 ------HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELH-NFTNLEELILDD  214 (263)
Q Consensus       142 ------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~l~~  214 (263)
                            .+++..+.   .+++|++|++++|.+++..|. .+..+++|++|++++|.+++..|.. +. .+++|++|++++
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQY  178 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTT
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHH-HhhhCCcccEEecCC
Confidence                  44433332   346778888888887765555 6777888888888888888755554 44 678888888888


Q ss_pred             CCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731          215 SDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       215 n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      |.+++..   ....+++|++|++++|.+++..|.  +..++.|
T Consensus       179 N~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L  216 (487)
T 3oja_A          179 NFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGV  216 (487)
T ss_dssp             SCCCEEE---CCCCCTTCCEEECCSSCCCEECGG--GGGGTTC
T ss_pred             Ccccccc---ccccCCCCCEEECCCCCCCCCCHh--HcCCCCc
Confidence            8887542   234588888888888888864333  4444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=8.7e-19  Score=137.58  Aligned_cols=143  Identities=20%  Similarity=0.347  Sum_probs=120.0

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      ...+++|++|++++|.++.. +.     +..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+. .+..
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l-~~-----l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~  110 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDL-TG-----IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIP-NLSG  110 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCC-TT-----GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSC-CCTT
T ss_pred             hhhcCCccEEeccCCCccCh-HH-----HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccCh-hhcC
Confidence            36678999999999999843 33     7889999999999997763  45788999999999999999876676 8999


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCC-CCcccchhhhhcCCCCCEEEecCcccccccCc-cchhcHH
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSD-LHISQLLQSIASFTSLKYLSMGFCTLTGALHG-QGKLRVS  255 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~l~~L~  255 (263)
                      +++|++|++++|.+++..+.. +..+++|++|++++|. ++ .+ + .+..+++|++|++++|.+++ ++. ..+++|+
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~-~~-~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~  184 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAIT-DI-M-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLN  184 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC-CC-G-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCC
T ss_pred             CCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCcc-cc-H-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCC
Confidence            999999999999999866665 9999999999999998 65 44 4 68999999999999999986 443 3444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=1.1e-17  Score=137.25  Aligned_cols=147  Identities=21%  Similarity=0.273  Sum_probs=124.9

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.++++++.+...       ..+..+++|++|++++|.+++..+      +..+++|++|++++|++++ +|. +..
T Consensus        41 ~~L~~L~l~~n~i~~l-------~~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~-l~~-~~~  105 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSL-------AGMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN-LNG-IPS  105 (263)
T ss_dssp             TTCSEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC-CTT-CCC
T ss_pred             CcCcEEECcCCCcccc-------hHHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC-cCc-ccc
Confidence            4678999999988532       147889999999999999987544      7889999999999999985 444 333


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                       ++|++|++++|.+++ ++  .+..+++|++|++++|.+++ ++ . +..+++|++|++++|++++.   ..+..+++|+
T Consensus       106 -~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~-~~-~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~  175 (263)
T 1xeu_A          106 -ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKS-IV-M-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVN  175 (263)
T ss_dssp             -SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCB-CG-G-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCC
T ss_pred             -CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCC-Ch-H-HccCCCCCEEECCCCcCcch---HHhccCCCCC
Confidence             999999999999985 44  68899999999999999998 43 3 88999999999999999854   5688999999


Q ss_pred             EEEecCcccccc
Q 024731          234 YLSMGFCTLTGA  245 (263)
Q Consensus       234 ~L~l~~n~l~~~  245 (263)
                      .|++++|++++.
T Consensus       176 ~L~l~~N~~~~~  187 (263)
T 1xeu_A          176 WIDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEeCCCCcccCC
Confidence            999999999854

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=5.5e-18  Score=153.32  Aligned_cols=168  Identities=18%  Similarity=0.129  Sum_probs=138.3

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc--cccccC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN--SIFSSL  151 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l  151 (263)
                      .+++.++++++.+...       .....+++|++|++++|.+++..+..    +..+++|++|++++|++++  .+|..+
T Consensus       331 ~~L~~L~l~~n~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~  399 (562)
T 3a79_B          331 MNIKMLSISDTPFIHM-------VCPPSPSSFTFLNFTQNVFTDSVFQG----CSTLKRLQTLILQRNGLKNFFKVALMT  399 (562)
T ss_dssp             CCCSEEEEESSCCCCC-------CCCSSCCCCCEEECCSSCCCTTTTTT----CCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred             CcceEEEccCCCcccc-------cCccCCCCceEEECCCCccccchhhh----hcccCCCCEEECCCCCcCCcccchhhh
Confidence            3578899999987421       12368899999999999999877754    8899999999999999996  446789


Q ss_pred             CCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731          152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS  231 (263)
Q Consensus       152 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  231 (263)
                      .++++|++|++++|.+.+.+|...+..+++|++|++++|.+++.++.. +.  ++|++|++++|+++ .+ |..+..+++
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~-~i-p~~~~~l~~  474 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNNRIM-SI-PKDVTHLQA  474 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSSCCC-CC-CTTTTSSCC
T ss_pred             cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCCcCc-cc-ChhhcCCCC
Confidence            999999999999999997677756889999999999999998755443 32  69999999999998 56 777779999


Q ss_pred             CCEEEecCcccccccCccchhcHHHHH
Q 024731          232 LKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       232 L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      |++|++++|+++ .+|...+..+++|+
T Consensus       475 L~~L~L~~N~l~-~l~~~~~~~l~~L~  500 (562)
T 3a79_B          475 LQELNVASNQLK-SVPDGVFDRLTSLQ  500 (562)
T ss_dssp             CSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred             CCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence            999999999999 57763355555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.76  E-value=2.7e-18  Score=145.41  Aligned_cols=86  Identities=21%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      ++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+. .+..+++|++|++++|+++ .+ |..+..+++|++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~l-p~~l~~l~~L~~  268 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKLS-RV-PAGLPDLKLLQV  268 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCCC-BC-CTTGGGCTTCCE
T ss_pred             CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcCe-ec-ChhhhcCccCCE
Confidence            3455555555555543333 555566666666666666553222 2555666666666666665 33 455556666666


Q ss_pred             EEecCccccc
Q 024731          235 LSMGFCTLTG  244 (263)
Q Consensus       235 L~l~~n~l~~  244 (263)
                      |++++|++++
T Consensus       269 L~l~~N~l~~  278 (332)
T 2ft3_A          269 VYLHTNNITK  278 (332)
T ss_dssp             EECCSSCCCB
T ss_pred             EECCCCCCCc
Confidence            6666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.76  E-value=1.7e-17  Score=127.85  Aligned_cols=131  Identities=19%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      +.++++++++....     .   .-.++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+..+++
T Consensus        10 ~~l~~~~~~l~~~p-----~---~~~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A           10 TEIRCNSKGLTSVP-----T---GIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TEEECCSSCCSSCC-----T---TCCTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEecCCCCccCC-----C---CCCCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCc
Confidence            35677777664321     1   12356777777777776554432    566777777777777777555555677777


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ  221 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  221 (263)
                      |++|++++|.+++..+. .+..+++|++|++++|.+++ ++...+..+++|++|++++|++.+..
T Consensus        78 L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNG-VFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCEEECCCCCccccCHH-HhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeeccC
Confidence            77777777777643332 56677777777777777765 44443566777777777777776543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.1e-19  Score=169.12  Aligned_cols=143  Identities=15%  Similarity=0.158  Sum_probs=107.6

Q ss_pred             cccccCCcCCcEEEccCcccCCC-----------------CCcccccccC--CCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           96 ASLFTPFQQLESLYLIGNNIAGC-----------------VENEGLDTLS--RLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        96 ~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      +..++.+++|++|++++|.+++.                 +|..    ++  ++++|++|+|++|.+.+.+|..++++++
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~----l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE  516 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC----CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh----hhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence            34578888888888888888872                 4443    55  7888888888888888888888888888


Q ss_pred             CCEEEcCCCc-CCC-CcCccccCC-------CCCCCEEEcCCCCCCCCCch-hhhcCCCCCcEEEcCCCCCCcccchhhh
Q 024731          157 LRNLSLIGNR-LIG-SIDIKGLDS-------LGNLEELDMSDNAINNLVIP-KELHNFTNLEELILDDSDLHISQLLQSI  226 (263)
Q Consensus       157 L~~L~L~~n~-l~~-~~p~~~~~~-------l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l  226 (263)
                      |++|++++|+ +++ .+|. .+..       +++|++|++++|.++ .+|. ..++++++|++|++++|+++ .+ | .+
T Consensus       517 L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l-p-~~  591 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL-E-AF  591 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC-C-CC
T ss_pred             CCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc-h-hh
Confidence            8888888887 776 5665 4433       448888888888887 4665 12777888888888888877 55 5 67


Q ss_pred             hcCCCCCEEEecCcccccccCc
Q 024731          227 ASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       227 ~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +.+++|+.|++++|.++ .+|.
T Consensus       592 ~~L~~L~~L~Ls~N~l~-~lp~  612 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE-EIPE  612 (876)
T ss_dssp             CTTSEESEEECCSSCCS-CCCT
T ss_pred             cCCCcceEEECcCCccc-cchH
Confidence            77777777787777777 6665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=5.5e-18  Score=154.17  Aligned_cols=149  Identities=28%  Similarity=0.353  Sum_probs=123.4

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      -..++.|++++|.+....     +  +..+++|+.|+|++|.+.+. +.     +..+++|++|+|++|.+++ + ..+.
T Consensus        64 l~~L~~L~Ls~N~l~~~~-----~--l~~l~~L~~L~Ls~N~l~~l-~~-----l~~l~~L~~L~Ls~N~l~~-l-~~l~  128 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIK-----P--LTNLKNLGWLFLDENKIKDL-SS-----LKDLKKLKSLSLEHNGISD-I-NGLV  128 (605)
T ss_dssp             CTTCCEEECTTSCCCCCG-----G--GGGCTTCCEEECCSSCCCCC-TT-----STTCTTCCEEECTTSCCCC-C-GGGG
T ss_pred             CCCCCEEEeeCCCCCCCh-----h--hccCCCCCEEECcCCCCCCC-hh-----hccCCCCCEEEecCCCCCC-C-cccc
Confidence            347889999999885322     2  78899999999999999864 22     7889999999999999985 3 4588


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      .+++|+.|+|++|.+++.  . .+..+++|+.|+|++|.+.+.. +  +..+++|+.|+|++|++++ +  ..+..+++|
T Consensus       129 ~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~i~~-l--~~l~~l~~L  199 (605)
T 1m9s_A          129 HLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKNHISD-L--RALAGLKNL  199 (605)
T ss_dssp             GCTTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCB-C--GGGTTCTTC
T ss_pred             CCCccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCCCCCC-C--hHHccCCCC
Confidence            899999999999998854  3 7889999999999999998843 3  8889999999999999985 3  458889999


Q ss_pred             CEEEecCcccccc
Q 024731          233 KYLSMGFCTLTGA  245 (263)
Q Consensus       233 ~~L~l~~n~l~~~  245 (263)
                      +.|++++|++++.
T Consensus       200 ~~L~L~~N~l~~~  212 (605)
T 1m9s_A          200 DVLELFSQECLNK  212 (605)
T ss_dssp             SEEECCSEEEECC
T ss_pred             CEEEccCCcCcCC
Confidence            9999999999864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=2.1e-17  Score=137.50  Aligned_cols=157  Identities=25%  Similarity=0.369  Sum_probs=131.6

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.++++++.+...       ..+..+++|++|++++|.+++..+      +..+++|++|++++|.+++ ++ .+..
T Consensus        46 ~~L~~L~l~~~~i~~~-------~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-~~-~l~~  110 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKD  110 (291)
T ss_dssp             HTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred             CcccEEEccCCCcccC-------hhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence            3578999999988532       237889999999999999987544      7899999999999999985 34 4899


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+.+ ++  .+..+++|++|++++|.+++.  .. +..+++|++|++++|++++.. +  +..+++|+
T Consensus       111 l~~L~~L~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~~-~--l~~l~~L~  181 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQ  181 (291)
T ss_dssp             CTTCCEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCCCG-G--GTTCTTCC
T ss_pred             CCCCCEEECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hh-hccCCCCCEEEccCCccccch-h--hcCCCccC
Confidence            9999999999999885 43  688999999999999999984  43 899999999999999998654 4  89999999


Q ss_pred             EEEecCcccccccCccchhcHHHH
Q 024731          234 YLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      +|++++|.+++ +|.  +..+++|
T Consensus       182 ~L~L~~N~i~~-l~~--l~~l~~L  202 (291)
T 1h6t_A          182 NLYLSKNHISD-LRA--LAGLKNL  202 (291)
T ss_dssp             EEECCSSCCCB-CGG--GTTCTTC
T ss_pred             EEECCCCcCCC-Chh--hccCCCC
Confidence            99999999985 554  4444333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=1.4e-18  Score=146.24  Aligned_cols=169  Identities=20%  Similarity=0.146  Sum_probs=120.4

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccc------------cccCCCCCCCEEEccCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGL------------DTLSRLNNLKFLYLDYN  141 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------~~l~~l~~L~~L~Ls~n  141 (263)
                      .+++.+++++|.+....       .+..+++|++|++++|.+++..+....            .....+++|++|++++|
T Consensus        58 ~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N  130 (317)
T 3o53_A           58 TKLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN  130 (317)
T ss_dssp             TTCCEEECTTSCCEEEE-------EETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS
T ss_pred             CcCCEEECCCCcCCcch-------hhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC
Confidence            35666777776663211       145556666666666655432211000            00234678999999999


Q ss_pred             cCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc-CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731          142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL-DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS  220 (263)
Q Consensus       142 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  220 (263)
                      .+++..+..++.+++|++|++++|.+.+..+. .+ ..+++|++|++++|.+++. +.  ...+++|++|++++|++++ 
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~-  205 (317)
T 3o53_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAF-  205 (317)
T ss_dssp             CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCE-
T ss_pred             CCCCccchhhhccCCCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCccc-cc--ccccccCCEEECCCCcCCc-
Confidence            99987777888999999999999998865555 44 4789999999999999874 33  4468999999999999985 


Q ss_pred             cchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731          221 QLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       221 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      + +..+..+++|++|++++|+++ .+|. .+..+++|
T Consensus       206 l-~~~~~~l~~L~~L~L~~N~l~-~l~~-~~~~l~~L  239 (317)
T 3o53_A          206 M-GPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNL  239 (317)
T ss_dssp             E-CGGGGGGTTCSEEECTTSCCC-EECT-TCCCCTTC
T ss_pred             c-hhhhcccCcccEEECcCCccc-chhh-HhhcCCCC
Confidence            4 556899999999999999999 5676 34444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.74  E-value=5.4e-18  Score=160.24  Aligned_cols=165  Identities=18%  Similarity=0.168  Sum_probs=140.4

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcccccc--C
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--L  151 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l  151 (263)
                      .+++.|++++|...  +  .+.+..|.++++|++|++++|.+.+..|..    +.++++|++|+|++|.+++.+|..  +
T Consensus        48 ~~L~~LdLs~n~~~--~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           48 EQLQLLELGSQYTP--L--TIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             CSCSEEEECTTCCC--C--EECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             ccCeEEeCCCCCCc--c--ccCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccc
Confidence            46889999998542  2  355677999999999999999999887764    899999999999999999877665  8


Q ss_pred             CCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCC--CCCcEEEcCCCCCCcccchhhhhcC
Q 024731          152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNF--TNLEELILDDSDLHISQLLQSIASF  229 (263)
Q Consensus       152 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~l~~l  229 (263)
                      +++++|++|++++|.+.+..+...+.++++|++|++++|.+++..+.. +..+  ++|+.|++++|.+.+.. +..++.+
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~  197 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRV-SVDWGKC  197 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCC-CCCCCSS
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCcccccc-ccchhhc
Confidence            999999999999999987655447999999999999999999866654 7766  89999999999998876 6666666


Q ss_pred             CC------CCEEEecCcccccccCc
Q 024731          230 TS------LKYLSMGFCTLTGALHG  248 (263)
Q Consensus       230 ~~------L~~L~l~~n~l~~~~p~  248 (263)
                      ++      |++|++++|.+++.+|.
T Consensus       198 ~~~~~~~~L~~L~Ls~n~l~~~~~~  222 (844)
T 3j0a_A          198 MNPFRNMVLEILDVSGNGWTVDITG  222 (844)
T ss_dssp             SCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred             CCccccCceeEEecCCCcCchhHHH
Confidence            55      99999999999887776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=1.4e-17  Score=147.37  Aligned_cols=130  Identities=28%  Similarity=0.387  Sum_probs=57.3

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      +..+++|++|++++|.+.+..+      +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+. +  .+..
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~--~~~~  307 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-S--PISN  307 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-G--GGGG
T ss_pred             hhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-h--hhcC
Confidence            3445555555555555544322      3444555555555555543222  44444555555555544432 1  1334


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  245 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  245 (263)
                      +++|++|++++|.+++..+   +..+++|+.|++++|++++.   ..+..+++|++|++++|++++.
T Consensus       308 l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCcc
Confidence            4444444444444444211   33344444444444444321   2333444444444444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=2.1e-18  Score=147.24  Aligned_cols=185  Identities=18%  Similarity=0.190  Sum_probs=134.1

Q ss_pred             CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN  132 (263)
Q Consensus        62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~  132 (263)
                      |.+..|.|...         ...+++|++++|++..     +.+..|.++++|++|++++|.+.+.++..   .|.++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~   80 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK   80 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTT
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhcchh
Confidence            78999999752         2368899999999863     45567899999999999999997766652   3677777


Q ss_pred             CCE-EEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcC------------------------ccccCCC-CCCCEEE
Q 024731          133 LKF-LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID------------------------IKGLDSL-GNLEELD  186 (263)
Q Consensus       133 L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p------------------------~~~~~~l-~~L~~L~  186 (263)
                      +++ +.+++|+++...|..|..+++|++|++++|.+....+                        ...+..+ ..++.|+
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~  160 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  160 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence            665 5566788886667778888888888888887653221                        1122223 2467788


Q ss_pred             cCCCCCCCCCchhhhcCCCCCcEEEcCC-CCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          187 MSDNAINNLVIPKELHNFTNLEELILDD-SDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       187 L~~n~l~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      +++|.++. ++.. .....+|+.+++.+ |.++ .+.++.|..+++|++||+++|+++ .+|...+.+|++|+
T Consensus       161 L~~N~i~~-i~~~-~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          161 LNKNGIQE-IHNS-AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR  229 (350)
T ss_dssp             CCSSCCCE-ECTT-SSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred             cccccccC-CChh-hccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhh
Confidence            88888876 5554 44556788888875 5555 452567889999999999999998 56765666665554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=3.7e-19  Score=150.67  Aligned_cols=137  Identities=20%  Similarity=0.205  Sum_probs=68.6

Q ss_pred             cCCcCCcEEEccCcccCCC-CCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCC-cCCCC-cCcccc
Q 024731          100 TPFQQLESLYLIGNNIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN-RLIGS-IDIKGL  176 (263)
Q Consensus       100 ~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~  176 (263)
                      ..+++|++|++++|.+++. .+.    .+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++. .+
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~  164 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LL  164 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HH
T ss_pred             ccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HH
Confidence            3456666666666655432 222    2455566666666666655555555555666666666665 34321 232 34


Q ss_pred             CCCCCCCEEEcCCC-CCCCCCchhhhcCCC-CCcEEEcCCC--CCCcccchhhhhcCCCCCEEEecCcc
Q 024731          177 DSLGNLEELDMSDN-AINNLVIPKELHNFT-NLEELILDDS--DLHISQLLQSIASFTSLKYLSMGFCT  241 (263)
Q Consensus       177 ~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~-~L~~L~l~~n--~l~~~~~~~~l~~l~~L~~L~l~~n~  241 (263)
                      ..+++|++|++++| .+++......+..++ +|++|++++|  .+++..++..+..+++|++|++++|.
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            45555555555555 554321112244455 5555555555  33322214444455555555555555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=3.8e-17  Score=127.81  Aligned_cols=128  Identities=21%  Similarity=0.230  Sum_probs=100.7

Q ss_pred             EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCC
Q 024731           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (263)
Q Consensus        78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  157 (263)
                      .++++++++...+.     . +  .+++++|++++|.++.. |.    .+..+++|++|++++|.+++..+..|.++++|
T Consensus        14 ~l~~~~~~l~~ip~-----~-~--~~~l~~L~L~~n~i~~i-p~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           14 VVRCSNKGLKVLPK-----G-I--PRDVTELYLDGNQFTLV-PK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             EEECTTSCCSSCCS-----C-C--CTTCCEEECCSSCCCSC-CG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEEcCCCCCCcCCC-----C-C--CCCCCEEECCCCcCchh-HH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            57888888754321     1 1  25789999999998743 33    37888999999999999987777788899999


Q ss_pred             CEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731          158 RNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS  220 (263)
Q Consensus       158 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  220 (263)
                      ++|++++|.+++..+. .+..+++|++|+|++|.++. ++...+..+++|+.|++++|.+...
T Consensus        81 ~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPR-TFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CEEECCSSCCCBCCTT-TTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CEEECCCCccCEeCHH-HhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeecC
Confidence            9999999998865554 78889999999999999887 5554588888999999999988643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=8.5e-20  Score=154.60  Aligned_cols=173  Identities=20%  Similarity=0.227  Sum_probs=140.6

Q ss_pred             CCCCCCceEEcCCCCcEEEEecCCCCCccccccccccccccCC--cCCcEEEccCcccCCCCCcccccccCCCCCCCEEE
Q 024731           60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPF--QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY  137 (263)
Q Consensus        60 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~  137 (263)
                      -|.+|.++.|+  ...++.++++++.+.        +..+..+  +.++.|++++|.+.+..+.     +..+++|++|+
T Consensus        35 vc~~W~~~~~~--~~~~~~l~l~~~~~~--------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~   99 (336)
T 2ast_B           35 VCKRWYRLASD--ESLWQTLDLTGKNLH--------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMD   99 (336)
T ss_dssp             SCHHHHHHHTC--STTSSEEECTTCBCC--------HHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEE
T ss_pred             HHHHHHHHhcC--chhheeeccccccCC--------HHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEE
Confidence            45578888874  345778999988764        2335556  7999999999999987765     56799999999


Q ss_pred             ccCCcCCcc-ccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCC-CCCCCCchhhhcCCCCCcEEEcCCC
Q 024731          138 LDYNHFNNS-IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN-AINNLVIPKELHNFTNLEELILDDS  215 (263)
Q Consensus       138 Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~l~~n  215 (263)
                      +++|.+++. ++..+..+++|++|++++|.+++..+. .+..+++|++|++++| .+++...+..+..+++|++|++++|
T Consensus       100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            999999866 788899999999999999998877776 8889999999999999 6775322333788999999999999


Q ss_pred             -CCCcccchhhhhcCC-CCCEEEecCc--ccc-cccCc
Q 024731          216 -DLHISQLLQSIASFT-SLKYLSMGFC--TLT-GALHG  248 (263)
Q Consensus       216 -~l~~~~~~~~l~~l~-~L~~L~l~~n--~l~-~~~p~  248 (263)
                       .+++..++..+..++ +|++|++++|  .++ +.+|.
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence             998653377889999 9999999999  455 34444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=4.4e-17  Score=138.52  Aligned_cols=130  Identities=22%  Similarity=0.332  Sum_probs=112.4

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      +..+++|++|++++|.+++..+      +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+ ++  .+..
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~--~~~~  285 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS--VLNN  285 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred             hhcCCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch--hhcC
Confidence            6788999999999999987544      78899999999999999853  468899999999999999885 44  6889


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      +++|++|++++|.+++..+. .+..+++|++|++++|++++.. |  +..+++|++|++++|.++
T Consensus       286 l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIR-P--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCG-G--GGGCTTCSEESSSCC---
T ss_pred             CCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCcccccc-C--hhhhhccceeehhhhccc
Confidence            99999999999999985555 4999999999999999998655 4  889999999999999986

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=4.8e-17  Score=127.11  Aligned_cols=113  Identities=21%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             CCCEEEccCCcCCccccc-cCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEE
Q 024731          132 NLKFLYLDYNHFNNSIFS-SLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEEL  210 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  210 (263)
                      ++++|++++|.+++..+. .++.+++|++|++++|.+++..|. .+..+++|++|++++|.+++..+. .+..+++|++|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNK-MFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSS-SSTTCTTCCEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCCccCHH-HhcCCCCCCEE
Confidence            555555555555533332 245555555555555555544343 555555555555555555553222 25555555555


Q ss_pred             EcCCCCCCcccchhhhhcCCCCCEEEecCcccccccC
Q 024731          211 ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALH  247 (263)
Q Consensus       211 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p  247 (263)
                      ++++|++++.. |..+..+++|++|++++|++++..+
T Consensus       108 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          108 NLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCccCcCc
Confidence            55555555444 4555555555555555555554443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1e-18  Score=162.31  Aligned_cols=115  Identities=19%  Similarity=0.180  Sum_probs=56.2

Q ss_pred             cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN  206 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  206 (263)
                      +..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|. .+..+++|++|+|++|.++. +|.. ++.+++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~l~~  294 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLTS-LPAE-LGSCFQ  294 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCSS-CCSS-GGGGTT
T ss_pred             hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCCc-cChh-hcCCCC
Confidence            444455555555555554 34444445555555555555544 4443 44555555555555555542 3443 455555


Q ss_pred             CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      |++|+|++|.++ .+ |..|+.+++|++|+|++|.+++.+|.
T Consensus       295 L~~L~L~~N~l~-~l-p~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          295 LKYFYFFDNMVT-TL-PWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CSEEECCSSCCC-CC-CSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CCEEECCCCCCC-cc-ChhhhcCCCccEEeCCCCccCCCChH
Confidence            555555555554 33 44455555555555555555544444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=8.4e-17  Score=146.40  Aligned_cols=157  Identities=25%  Similarity=0.372  Sum_probs=131.9

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.|+++++.+...       ..+..+++|+.|+|++|.+.+..+      +..+++|++|+|++|.+++ +| .+..
T Consensus        43 ~~L~~L~l~~n~i~~l-------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-l~-~l~~  107 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-LS-SLKD  107 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred             CCCCEEECcCCCCCCC-------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence            4577889999887532       247889999999999999987654      7889999999999999985 33 7899


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|+|++|.+.+ ++  .+..+++|+.|+|++|.+++.  .. +..+++|+.|+|++|++++.. +  +..+++|+
T Consensus       108 l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~  178 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQ  178 (605)
T ss_dssp             CTTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--GG-GGSCTTCSEEECCSSCCCCCG-G--GTTCTTCC
T ss_pred             CCCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--hh-hcccCCCCEEECcCCcCCCch-h--hccCCCCC
Confidence            9999999999999985 43  688999999999999999984  43 899999999999999998755 4  89999999


Q ss_pred             EEEecCcccccccCccchhcHHHH
Q 024731          234 YLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      .|+|++|++++ +|.  +..+++|
T Consensus       179 ~L~Ls~N~i~~-l~~--l~~l~~L  199 (605)
T 1m9s_A          179 NLYLSKNHISD-LRA--LAGLKNL  199 (605)
T ss_dssp             EEECCSSCCCB-CGG--GTTCTTC
T ss_pred             EEECcCCCCCC-ChH--HccCCCC
Confidence            99999999986 444  4444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=2.4e-17  Score=135.19  Aligned_cols=145  Identities=21%  Similarity=0.251  Sum_probs=119.9

Q ss_pred             EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCC
Q 024731           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (263)
Q Consensus        76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  155 (263)
                      ++.++++++.+....       .+..+++|++|++++|.++... .     +..+++|++|++++|++++..+  +.+++
T Consensus        21 l~~l~l~~~~i~~~~-------~~~~l~~L~~L~l~~n~i~~l~-~-----l~~l~~L~~L~L~~N~i~~~~~--l~~l~   85 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV-------SQKELSGVQNFNGDNSNIQSLA-G-----MQFFTNLKELHLSHNQISDLSP--LKDLT   85 (263)
T ss_dssp             HHHHHHTCSCTTSEE-------CHHHHTTCSEEECTTSCCCCCT-T-----GGGCTTCCEEECCSSCCCCCGG--GTTCS
T ss_pred             HHHHHhcCCCccccc-------chhhcCcCcEEECcCCCcccch-H-----HhhCCCCCEEECCCCccCCChh--hccCC
Confidence            345566666664221       3678899999999999998643 2     7889999999999999996544  89999


Q ss_pred             CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEE
Q 024731          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYL  235 (263)
Q Consensus       156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  235 (263)
                      +|++|++++|++++ +|.  +.. ++|++|++++|.+++ + +. +..+++|++|++++|++++ . + .+..+++|++|
T Consensus        86 ~L~~L~L~~N~l~~-l~~--~~~-~~L~~L~L~~N~l~~-~-~~-l~~l~~L~~L~Ls~N~i~~-~-~-~l~~l~~L~~L  155 (263)
T 1xeu_A           86 KLEELSVNRNRLKN-LNG--IPS-ACLSRLFLDNNELRD-T-DS-LIHLKNLEILSIRNNKLKS-I-V-MLGFLSKLEVL  155 (263)
T ss_dssp             SCCEEECCSSCCSC-CTT--CCC-SSCCEEECCSSCCSB-S-GG-GTTCTTCCEEECTTSCCCB-C-G-GGGGCTTCCEE
T ss_pred             CCCEEECCCCccCC-cCc--ccc-CcccEEEccCCccCC-C-hh-hcCcccccEEECCCCcCCC-C-h-HHccCCCCCEE
Confidence            99999999999985 553  333 899999999999998 4 33 8999999999999999985 3 3 68999999999


Q ss_pred             EecCcccccc
Q 024731          236 SMGFCTLTGA  245 (263)
Q Consensus       236 ~l~~n~l~~~  245 (263)
                      ++++|++++.
T Consensus       156 ~L~~N~i~~~  165 (263)
T 1xeu_A          156 DLHGNEITNT  165 (263)
T ss_dssp             ECTTSCCCBC
T ss_pred             ECCCCcCcch
Confidence            9999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.72  E-value=6.7e-17  Score=142.98  Aligned_cols=108  Identities=29%  Similarity=0.377  Sum_probs=68.4

Q ss_pred             cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN  206 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  206 (263)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++  .+..+++|++|++++|.+++. ++  +..+++
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~  310 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-IS--PLAGLTALTNLELNENQLEDI-SP--ISNLKN  310 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCSCC-GG--GGGCTT
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-cc--cccCCCccCeEEcCCCcccCc-hh--hcCCCC
Confidence            4555666666666666664333  5666666666666666654 22  255666777777777776663 22  566677


Q ss_pred             CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731          207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  245 (263)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  245 (263)
                      |+.|++++|++++.. +  +..+++|++|++++|++++.
T Consensus       311 L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          311 LTYLTLYFNNISDIS-P--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CSEEECCSSCCSCCG-G--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCEEECcCCcCCCch-h--hccCccCCEeECCCCccCCc
Confidence            777777777776543 3  56777777777777777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=3.3e-16  Score=120.63  Aligned_cols=135  Identities=18%  Similarity=0.166  Sum_probs=107.6

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  183 (263)
                      ..+.+++++++++.....       ..++|++|++++|++++..+..+..+++|++|++++|.+++ +|...+..+++|+
T Consensus         8 ~~~~l~~~~~~l~~~p~~-------~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~   79 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTG-------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLT   79 (177)
T ss_dssp             ETTEEECCSSCCSSCCTT-------CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             CCCEEEecCCCCccCCCC-------CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccC
Confidence            356788888888754332       23689999999999987666678889999999999999875 4443678899999


Q ss_pred             EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +|++++|.+++ +++..+..+++|++|++++|++++.. +..+..+++|++|++++|++++..|.
T Consensus        80 ~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           80 ILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             EEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeC-HHHhcCCcccCEEEecCCCeeccCcc
Confidence            99999999988 44444788899999999999998544 55678899999999999999887664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=1.5e-17  Score=124.53  Aligned_cols=116  Identities=22%  Similarity=0.257  Sum_probs=101.7

Q ss_pred             CCCCCCCEEEccCCcCC-ccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731          128 SRLNNLKFLYLDYNHFN-NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN  206 (263)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  206 (263)
                      ...++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  . .+..+++|++|++++|.+++.+|.. +..+++
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~   89 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSGGLEVL-AEKCPN   89 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCSCTHHH-HHHCTT
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccchHHHH-hhhCCC
Confidence            34578999999999998 78898899999999999999999865  3 7899999999999999999865554 778999


Q ss_pred             CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccC
Q 024731          207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALH  247 (263)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p  247 (263)
                      |++|++++|++++...+..+..+++|++|++++|.+++..+
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999999999864225789999999999999999997655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.71  E-value=3e-17  Score=126.43  Aligned_cols=136  Identities=19%  Similarity=0.196  Sum_probs=112.1

Q ss_pred             ccccCCcCCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccc
Q 024731           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (263)
Q Consensus        97 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  175 (263)
                      ..+....+|++|++++|.++.. +.     +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++ +|...
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i-~~-----~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~   83 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVI-EN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGL   83 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCH
T ss_pred             HhcCCcCCceEEEeeCCCCchh-HH-----hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcch
Confidence            3466788999999999999854 43     3444 4999999999999964  688999999999999999985 55435


Q ss_pred             cCCCCCCCEEEcCCCCCCCCCch-hhhcCCCCCcEEEcCCCCCCcccchh----hhhcCCCCCEEEecCccccc
Q 024731          176 LDSLGNLEELDMSDNAINNLVIP-KELHNFTNLEELILDDSDLHISQLLQ----SIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       176 ~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----~l~~l~~L~~L~l~~n~l~~  244 (263)
                      +..+++|++|++++|.++. ++. ..+..+++|++|++++|+++. . |.    .+..+++|++||+++|....
T Consensus        84 ~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~-~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-K-KHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-S-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-c-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence            5889999999999999976 554 248899999999999999973 4 44    48999999999999998763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.70  E-value=2.3e-16  Score=139.21  Aligned_cols=142  Identities=18%  Similarity=0.115  Sum_probs=87.9

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      +++.+++++|.+...        .++.+++|++|++++|.+++. +      +..+++|++|++++|.+++ +|  ++.+
T Consensus        65 ~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~l  126 (457)
T 3bz5_A           65 GLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQN  126 (457)
T ss_dssp             TCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTTC
T ss_pred             CCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCCC
Confidence            455666666655321        145566666666666666553 1      4566666666666666664 33  5666


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      ++|++|++++|.+++ +   .+..+++|++|++++|...+.+  . +..+++|++|++++|++++ + +  ++.+++|++
T Consensus       127 ~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l~~-l-~--l~~l~~L~~  195 (457)
T 3bz5_A          127 PLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL--D-VTPQTQLTTLDCSFNKITE-L-D--VSQNKLLNR  195 (457)
T ss_dssp             TTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC--C-CTTCTTCCEEECCSSCCCC-C-C--CTTCTTCCE
T ss_pred             CcCCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc--c-cccCCcCCEEECCCCccce-e-c--cccCCCCCE
Confidence            666666666666654 2   2456666677777666544433  1 5667777777777777764 3 3  667777777


Q ss_pred             EEecCcccccc
Q 024731          235 LSMGFCTLTGA  245 (263)
Q Consensus       235 L~l~~n~l~~~  245 (263)
                      |++++|.+++.
T Consensus       196 L~l~~N~l~~~  206 (457)
T 3bz5_A          196 LNCDTNNITKL  206 (457)
T ss_dssp             EECCSSCCSCC
T ss_pred             EECcCCcCCee
Confidence            77777777753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=7.9e-17  Score=123.02  Aligned_cols=135  Identities=25%  Similarity=0.272  Sum_probs=113.2

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.+++++|.+.. +.  + +..+..+++|++|++++|.+++. +     .+..+++|++|++++|.+++.+|..+..
T Consensus        24 ~~L~~L~l~~n~l~~-~~--i-~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           24 AAVRELVLDNCKSND-GK--I-EGLTAEFVNLEFLSLINVGLISV-S-----NLPKLPKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             TSCSEEECCSCBCBT-TB--C-SSCCGGGGGCCEEEEESSCCCCC-S-----SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred             ccCCEEECCCCCCCh-hh--H-HHHHHhCCCCCEEeCcCCCCCCh-h-----hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence            568899999998851 12  2 34478899999999999999876 3     2889999999999999999778888888


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCCCc
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDLHI  219 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~  219 (263)
                      +++|++|++++|.+++..+...+..+++|++|++++|.+++. +.   ..+..+++|++|++++|.+..
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCCChhh
Confidence            999999999999998632213889999999999999999984 44   348999999999999998863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=9.7e-17  Score=144.74  Aligned_cols=150  Identities=17%  Similarity=0.130  Sum_probs=78.1

Q ss_pred             CCCce-EEcCCCCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC
Q 024731           63 QWERV-ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN  141 (263)
Q Consensus        63 ~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n  141 (263)
                      .|.++ .|..  .+++.++++++.+...+     ...   +++|++|++++|.++. +|.       .+++|++|++++|
T Consensus        49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~lp-----~~l---~~~L~~L~Ls~N~l~~-ip~-------~l~~L~~L~Ls~N  110 (571)
T 3cvr_A           49 AVSLLKECLI--NQFSELQLNRLNLSSLP-----DNL---PPQITVLEITQNALIS-LPE-------LPASLEYLDACDN  110 (571)
T ss_dssp             HHHHHHHHHH--TTCSEEECCSSCCSCCC-----SCC---CTTCSEEECCSSCCSC-CCC-------CCTTCCEEECCSS
T ss_pred             hhhhcccccc--CCccEEEeCCCCCCccC-----HhH---cCCCCEEECcCCCCcc-ccc-------ccCCCCEEEccCC
Confidence            68888 6742  46778888888775321     111   2456666666666653 221       1345555555555


Q ss_pred             cCCccccccCC------------------CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcC
Q 024731          142 HFNNSIFSSLG------------------GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHN  203 (263)
Q Consensus       142 ~l~~~~p~~l~------------------~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  203 (263)
                      .+++ +|. +.                  .+++|++|++++|.+++ +|.    .+++|++|++++|.+++ +|.  +. 
T Consensus       111 ~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~--l~-  179 (571)
T 3cvr_A          111 RLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE--LP-  179 (571)
T ss_dssp             CCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC--CC-
T ss_pred             CCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch--hh-
Confidence            5543 333 33                  34445555555555443 332    34455555555555555 333  32 


Q ss_pred             CCCCcEEEcCCCCCCcccchhhhhcCCCC-------CEEEecCcccccccCc
Q 024731          204 FTNLEELILDDSDLHISQLLQSIASFTSL-------KYLSMGFCTLTGALHG  248 (263)
Q Consensus       204 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~p~  248 (263)
                       ++|++|++++|+++ .+ |. +..  +|       +.|++++|+++ .+|.
T Consensus       180 -~~L~~L~Ls~N~L~-~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~  224 (571)
T 3cvr_A          180 -ESLEALDVSTNLLE-SL-PA-VPV--RNHHSEETEIFFRCRENRIT-HIPE  224 (571)
T ss_dssp             -TTCCEEECCSSCCS-SC-CC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred             -CCCCEEECcCCCCC-ch-hh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence             55666666666665 33 33 332  45       66666666666 4555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=4.7e-16  Score=121.59  Aligned_cols=129  Identities=19%  Similarity=0.265  Sum_probs=94.7

Q ss_pred             cEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEE
Q 024731          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL  185 (263)
Q Consensus       106 ~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  185 (263)
                      +.+++++|.++..+..     +  .++|++|++++|.++ .+|..|.++++|++|++++|.+++..+. .+..+++|++|
T Consensus        13 ~~l~~~~~~l~~ip~~-----~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-----I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCSSCCSC-----C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred             CEEEcCCCCCCcCCCC-----C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHh-HccCCCCCCEE
Confidence            5677888877654322     2  257888888888887 6677788888888888888887754443 67888888888


Q ss_pred             EcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731          186 DMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  245 (263)
Q Consensus       186 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  245 (263)
                      +|++|.+++. ++..+..+++|++|++++|+++... +..+..+++|+.|++++|++...
T Consensus        84 ~Ls~N~l~~i-~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           84 ILSYNRLRCI-PPRTFDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             ECCSSCCCBC-CTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEECS
T ss_pred             ECCCCccCEe-CHHHhCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeecC
Confidence            8888888774 3434778888888888888887544 55677788888888888887653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.68  E-value=6e-19  Score=152.42  Aligned_cols=142  Identities=19%  Similarity=0.218  Sum_probs=97.5

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCc-----cccccCCCCCCCCEEEcCCCcCC----CCcCc
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-----SIFSSLGGLSSLRNLSLIGNRLI----GSIDI  173 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~p~  173 (263)
                      ++|++|++++|.++....+.....+..+++|++|++++|.++.     ..+..+..+++|++|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            6777777777776522211111235567788888888888772     23446777888888888888875    44565


Q ss_pred             cccCCCCCCCEEEcCCCCCCCC----Cchhhh--cCCCCCcEEEcCCCCCCc----ccchhhh-hcCCCCCEEEecCccc
Q 024731          174 KGLDSLGNLEELDMSDNAINNL----VIPKEL--HNFTNLEELILDDSDLHI----SQLLQSI-ASFTSLKYLSMGFCTL  242 (263)
Q Consensus       174 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~l--~~l~~L~~L~l~~n~l~~----~~~~~~l-~~l~~L~~L~l~~n~l  242 (263)
                       .+..+++|++|++++|.+++.    ++.. +  +.+++|++|++++|.+++    .+ +..+ .++++|++|++++|++
T Consensus       239 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n~i~~~g~~~l-~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          239 -ALKSWPNLRELGLNDCLLSARGAAAVVDA-FSKLENIGLQTLRLQYNEIELDAVRTL-KTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             -HGGGCTTCCEEECTTCCCCHHHHHHHHHH-HHTCSSCCCCEEECCSSCCBHHHHHHH-HHHHHHHCTTCCEEECTTSBS
T ss_pred             -HHccCCCcCEEECCCCCCchhhHHHHHHH-HhhccCCCeEEEECcCCcCCHHHHHHH-HHHHHhcCCCceEEEccCCcC
Confidence             677788888888888888764    2232 4  337888888888888876    24 5666 5678888888888888


Q ss_pred             ccccC
Q 024731          243 TGALH  247 (263)
Q Consensus       243 ~~~~p  247 (263)
                      ++..|
T Consensus       316 ~~~~~  320 (386)
T 2ca6_A          316 SEEDD  320 (386)
T ss_dssp             CTTSH
T ss_pred             Ccchh
Confidence            86554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=3.1e-16  Score=141.48  Aligned_cols=128  Identities=17%  Similarity=0.145  Sum_probs=100.8

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  183 (263)
                      +|++|++++|.+++ +|.       .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.  +.  ++|+
T Consensus       121 ~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~  183 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE-------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLE  183 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCC
T ss_pred             CCCEEECCCCcCCC-CCC-------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCC
Confidence            66666666666665 221       46789999999999985 665   57899999999999986 775  44  8999


Q ss_pred             EEEcCCCCCCCCCchhhhcCCCCC-------cEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHH
Q 024731          184 ELDMSDNAINNLVIPKELHNFTNL-------EELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSE  256 (263)
Q Consensus       184 ~L~L~~n~l~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~  256 (263)
                      +|++++|.++. +|.  +..  +|       +.|++++|+++ .+ |..+..+++|+.|++++|++++.+|. .+.++..
T Consensus       184 ~L~Ls~N~L~~-lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~l-p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~  255 (571)
T 3cvr_A          184 ALDVSTNLLES-LPA--VPV--RNHHSEETEIFFRCRENRIT-HI-PENILSLDPTCTIILEDNPLSSRIRE-SLSQQTA  255 (571)
T ss_dssp             EEECCSSCCSS-CCC--CC----------CCEEEECCSSCCC-CC-CGGGGGSCTTEEEECCSSSCCHHHHH-HHHHHHH
T ss_pred             EEECcCCCCCc-hhh--HHH--hhhcccccceEEecCCCcce-ec-CHHHhcCCCCCEEEeeCCcCCCcCHH-HHHHhhc
Confidence            99999999985 655  433  66       99999999998 46 78888899999999999999998887 5555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=8.2e-18  Score=145.29  Aligned_cols=173  Identities=20%  Similarity=0.255  Sum_probs=132.9

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCC---------CCCCEEEccCCcC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL---------NNLKFLYLDYNHF  143 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l---------~~L~~L~Ls~n~l  143 (263)
                      ..+++.+++++|.+...+...+ +..+..+++|++|++++|.+++..+......+..+         ++|++|++++|.+
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPL-IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CCcccEEECCCCcCCHHHHHHH-HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            3578999999999865433222 33568899999999999998654443322234444         8999999999999


Q ss_pred             C-cccc---ccCCCCCCCCEEEcCCCcCCC-----CcCccccCCCCCCCEEEcCCCCCC----CCCchhhhcCCCCCcEE
Q 024731          144 N-NSIF---SSLGGLSSLRNLSLIGNRLIG-----SIDIKGLDSLGNLEELDMSDNAIN----NLVIPKELHNFTNLEEL  210 (263)
Q Consensus       144 ~-~~~p---~~l~~l~~L~~L~L~~n~l~~-----~~p~~~~~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L  210 (263)
                      + +.++   ..+..+++|++|++++|.+..     ..+. .+..+++|++|+|++|.++    ..++.. +..+++|++|
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L  249 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLREL  249 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEE
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH-HhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEE
Confidence            8 4445   467788999999999999872     2332 6778999999999999985    435554 8899999999


Q ss_pred             EcCCCCCCccc---chhhhhc--CCCCCEEEecCccccc----ccCc
Q 024731          211 ILDDSDLHISQ---LLQSIAS--FTSLKYLSMGFCTLTG----ALHG  248 (263)
Q Consensus       211 ~l~~n~l~~~~---~~~~l~~--l~~L~~L~l~~n~l~~----~~p~  248 (263)
                      ++++|.+++..   ++..+..  +++|++|++++|.+++    .+|.
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~  296 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  296 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence            99999998652   1556643  8999999999999997    3665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.67  E-value=4.4e-16  Score=137.46  Aligned_cols=143  Identities=18%  Similarity=0.160  Sum_probs=93.4

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.+++++|.+...        .++.+++|++|++++|.+++. +      +..+++|++|++++|...+.+  .++.
T Consensus       106 ~~L~~L~L~~N~l~~l--------~~~~l~~L~~L~l~~N~l~~l-~------l~~l~~L~~L~l~~n~~~~~~--~~~~  168 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKL--------DVSQNPLLTYLNCARNTLTEI-D------VSHNTQLTELDCHLNKKITKL--DVTP  168 (457)
T ss_dssp             TTCCEEECCSSCCSCC--------CCTTCTTCCEEECTTSCCSCC-C------CTTCTTCCEEECTTCSCCCCC--CCTT
T ss_pred             CcCCEEECCCCcCCee--------cCCCCCcCCEEECCCCcccee-c------cccCCcCCEEECCCCCccccc--cccc
Confidence            4678899999887531        167788888888888888763 2      566677777777777544444  3566


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+++ +|   +..+++|++|++++|.+++.   . ++.+++|++|++++|++++ + |  ++.+++|+
T Consensus       169 l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~-l~~l~~L~~L~Ls~N~l~~-i-p--~~~l~~L~  236 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---D-LNQNIQLTFLDCSSNKLTE-I-D--VTPLTQLT  236 (457)
T ss_dssp             CTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSC-C-C--CTTCTTCS
T ss_pred             CCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---c-cccCCCCCEEECcCCcccc-c-C--ccccCCCC
Confidence            6677777777776664 33   45566666666666666653   1 5566666666666666664 3 3  55666666


Q ss_pred             EEEecCcccccc
Q 024731          234 YLSMGFCTLTGA  245 (263)
Q Consensus       234 ~L~l~~n~l~~~  245 (263)
                      +|++++|++++.
T Consensus       237 ~L~l~~N~l~~~  248 (457)
T 3bz5_A          237 YFDCSVNPLTEL  248 (457)
T ss_dssp             EEECCSSCCSCC
T ss_pred             EEEeeCCcCCCc
Confidence            666666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.64  E-value=1.4e-17  Score=142.66  Aligned_cols=169  Identities=21%  Similarity=0.219  Sum_probs=82.6

Q ss_pred             cEEEEecCCCCCccccccccccccccCC-cCCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCccccccC-
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPF-QQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSSL-  151 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l-  151 (263)
                      +++.+++++|.+...+...+. ..+... ++|++|++++|.+++..+......+..+ ++|++|++++|.+++..+..+ 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            466666666665432221110 011111 5666666666666554443322223334 566666666666654433322 


Q ss_pred             ---CC-CCCCCEEEcCCCcCCCCcCc---cccCCCC-CCCEEEcCCCCCCCCCchh---hhcCC-CCCcEEEcCCCCCCc
Q 024731          152 ---GG-LSSLRNLSLIGNRLIGSIDI---KGLDSLG-NLEELDMSDNAINNLVIPK---ELHNF-TNLEELILDDSDLHI  219 (263)
Q Consensus       152 ---~~-l~~L~~L~L~~n~l~~~~p~---~~~~~l~-~L~~L~L~~n~l~~~~~~~---~l~~l-~~L~~L~l~~n~l~~  219 (263)
                         .. .++|++|++++|.+.+..+.   ..+..++ +|++|++++|.+++..+..   .+..+ ++|++|++++|.+++
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence               22 24666666666665532111   0223333 6666666666665533221   12333 366666666666654


Q ss_pred             cc---chhhhhc-CCCCCEEEecCccccc
Q 024731          220 SQ---LLQSIAS-FTSLKYLSMGFCTLTG  244 (263)
Q Consensus       220 ~~---~~~~l~~-l~~L~~L~l~~n~l~~  244 (263)
                      ..   ++..+.. .++|++|++++|.+++
T Consensus       211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          211 KSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             SCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             hHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            21   1334444 2366666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.64  E-value=5.8e-17  Score=138.87  Aligned_cols=169  Identities=19%  Similarity=0.183  Sum_probs=125.3

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCc-CCcEEEccCcccCCCCCcccccccCCC-CCCCEEEccCCcCCcccccc
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIFSS  150 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~  150 (263)
                      ...++.+++++|.+...+...+ ...+..++ +|++|++++|.+++..+......+... ++|++|++++|.+++..+..
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            3458999999999865432111 14567788 899999999999877665433333333 89999999999998766664


Q ss_pred             C----CCC-CCCCEEEcCCCcCCCCcCccc----cCC-CCCCCEEEcCCCCCCCCCchh---hhcCCC-CCcEEEcCCCC
Q 024731          151 L----GGL-SSLRNLSLIGNRLIGSIDIKG----LDS-LGNLEELDMSDNAINNLVIPK---ELHNFT-NLEELILDDSD  216 (263)
Q Consensus       151 l----~~l-~~L~~L~L~~n~l~~~~p~~~----~~~-l~~L~~L~L~~n~l~~~~~~~---~l~~l~-~L~~L~l~~n~  216 (263)
                      +    ..+ ++|++|++++|.+++..+. .    +.. .++|++|++++|.+++.....   .+..++ +|++|++++|+
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence            4    344 8999999999998754332 3    334 369999999999998643322   245565 99999999999


Q ss_pred             CCcccchhhh----hcC-CCCCEEEecCccccc
Q 024731          217 LHISQLLQSI----ASF-TSLKYLSMGFCTLTG  244 (263)
Q Consensus       217 l~~~~~~~~l----~~l-~~L~~L~l~~n~l~~  244 (263)
                      +++.. +..+    ... ++|++|++++|.+++
T Consensus       179 l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          179 LASKN-CAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             GGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             Cchhh-HHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            98665 5444    445 599999999999986

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=2.5e-15  Score=115.02  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=88.1

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  183 (263)
                      ..+.+++++|.++..+..     +  .++|++|+|++|.+++..|..|.++++|++|++++|++++ +|...+..+++|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~-----~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTG-----I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred             CCCEEEeCCCCcCccCcc-----C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCC
Confidence            457899999998764332     3  3789999999999998778889999999999999999885 4443678899999


Q ss_pred             EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731          184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS  220 (263)
Q Consensus       184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  220 (263)
                      +|+|++|.+++ +++..+..+++|++|++++|+++..
T Consensus        82 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           82 QLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             EEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99999999988 4554588899999999999988754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.63  E-value=1.1e-17  Score=147.40  Aligned_cols=142  Identities=22%  Similarity=0.163  Sum_probs=84.0

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC-----CCCCCCEEEcCCCcCCCC----c
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG-----GLSSLRNLSLIGNRLIGS----I  171 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~  171 (263)
                      .+++|++|++++|.+++.........+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    +
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            4555666666666554321111112244456666666666666533222222     224666666666666543    2


Q ss_pred             CccccCCCCCCCEEEcCCCCCCCCCchhhhcC-----CCCCcEEEcCCCCCCc----ccchhhhhcCCCCCEEEecCccc
Q 024731          172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHN-----FTNLEELILDDSDLHI----SQLLQSIASFTSLKYLSMGFCTL  242 (263)
Q Consensus       172 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~-----l~~L~~L~l~~n~l~~----~~~~~~l~~l~~L~~L~l~~n~l  242 (263)
                      +. .+..+++|++|++++|.+++..+.. +..     .++|++|++++|.+++    .+ +..+..+++|++|++++|++
T Consensus       334 ~~-~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          334 SS-VLAQNRFLLELQISNNRLEDAGVRE-LCQGLGQPGSVLRVLWLADCDVSDSSCSSL-AATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HH-HHHHCSSCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCCCCCEEECCSSSC
T ss_pred             HH-HHhhCCCccEEEccCCccccccHHH-HHHHHcCCCCceEEEECCCCCCChhhHHHH-HHHHHhCCCccEEECCCCCC
Confidence            33 4556677888888888776533322 321     5688888888888875    44 67777888888888888887


Q ss_pred             ccc
Q 024731          243 TGA  245 (263)
Q Consensus       243 ~~~  245 (263)
                      ++.
T Consensus       411 ~~~  413 (461)
T 1z7x_W          411 GDA  413 (461)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=4.9e-15  Score=113.85  Aligned_cols=107  Identities=19%  Similarity=0.263  Sum_probs=86.7

Q ss_pred             CcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCE
Q 024731          105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE  184 (263)
Q Consensus       105 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  184 (263)
                      -+.+++++|.++..+..     +  .++|++|+|++|++++..|..|.++++|++|+|++|++++ +|...+..+++|++
T Consensus        14 ~~~l~~~~n~l~~iP~~-----~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAG-----I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSSCCSC-----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCccCCC-----c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhE
Confidence            36889999988654332     3  3789999999999998778889999999999999999885 55436788999999


Q ss_pred             EEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731          185 LDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS  220 (263)
Q Consensus       185 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  220 (263)
                      |+|++|.+++ +++..+..+++|++|++++|++...
T Consensus        86 L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           86 LDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             EECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             EECCCCccce-eCHHHhccccCCCEEEeCCCCcccc
Confidence            9999999987 5554588899999999999988743

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=3.1e-15  Score=131.93  Aligned_cols=78  Identities=22%  Similarity=0.252  Sum_probs=35.1

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  183 (263)
                      +|++|++++|.+++ +|.     +..+++|++|++++|++++ +|..+   .+|++|++++|.+.+ +|  .+..+++|+
T Consensus       132 ~L~~L~L~~n~l~~-lp~-----~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~  198 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LPE-----LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLT  198 (454)
T ss_dssp             TCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCC
T ss_pred             CCCEEECcCCCCCC-Ccc-----cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCC
Confidence            45555555555543 221     4445555555555555542 33221   244444444444443 33  244444444


Q ss_pred             EEEcCCCCCCC
Q 024731          184 ELDMSDNAINN  194 (263)
Q Consensus       184 ~L~L~~n~l~~  194 (263)
                      +|++++|.+++
T Consensus       199 ~L~l~~N~l~~  209 (454)
T 1jl5_A          199 AIYADNNSLKK  209 (454)
T ss_dssp             EEECCSSCCSS
T ss_pred             EEECCCCcCCc
Confidence            44444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.62  E-value=9.8e-15  Score=133.10  Aligned_cols=88  Identities=20%  Similarity=0.191  Sum_probs=61.0

Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      ++|++|++++|.+++ +|    ..+++|++|++++|.++. +|.    .+++|+.|++++|+++ .+ |..+..+++|+.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-lp~----~~~~L~~L~Ls~N~L~-~l-p~~l~~l~~L~~  288 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRNQLT-RL-PESLIHLSSETT  288 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCC-SC-CGGGGGSCTTCE
T ss_pred             CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-CCc----ccccCcEEeCCCCCCC-cC-CHHHhhccccCE
Confidence            445555565555553 33    234667777777777665 443    4577888888888888 55 778889999999


Q ss_pred             EEecCcccccccCccchhcHH
Q 024731          235 LSMGFCTLTGALHGQGKLRVS  255 (263)
Q Consensus       235 L~l~~n~l~~~~p~~~l~~L~  255 (263)
                      |++++|++++.+|. .+.+++
T Consensus       289 L~L~~N~l~~~~~~-~l~~L~  308 (622)
T 3g06_A          289 VNLEGNPLSERTLQ-ALREIT  308 (622)
T ss_dssp             EECCSCCCCHHHHH-HHHHHH
T ss_pred             EEecCCCCCCcCHH-HHHhcc
Confidence            99999999887766 454444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=4.6e-15  Score=134.12  Aligned_cols=143  Identities=24%  Similarity=0.269  Sum_probs=113.4

Q ss_pred             cccCCcCCcEEE-ccCcccCCCCCcc----cccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcC
Q 024731           98 LFTPFQQLESLY-LIGNNIAGCVENE----GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID  172 (263)
Q Consensus        98 ~~~~l~~L~~L~-l~~n~l~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  172 (263)
                      .++.+++|+.|+ ++.|.+.....-.    ....+ ....|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l-~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp  479 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM-EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALP  479 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH-HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCC
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhccccccc-CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccc
Confidence            456778888888 5655432111000    00001 11359999999999995 676 999999999999999998 788


Q ss_pred             ccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          173 IKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       173 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      . .++.+++|++|+|++|.+++ +| . ++.+++|+.|++++|++++...|..++.+++|+.|++++|++++.+|.
T Consensus       480 ~-~~~~l~~L~~L~Ls~N~l~~-lp-~-l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          480 P-ALAALRCLEVLQASDNALEN-VD-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCC-CG-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             h-hhhcCCCCCEEECCCCCCCC-Cc-c-cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            7 89999999999999999998 66 4 999999999999999998653378899999999999999999977664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=1.2e-14  Score=111.26  Aligned_cols=106  Identities=24%  Similarity=0.242  Sum_probs=87.0

Q ss_pred             EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      +.++++++.+....     .. +  .++|++|++++|.+++..+..    |..+++|++|+|++|++++..+..|.++++
T Consensus        12 ~~l~~s~n~l~~ip-----~~-~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           12 TTVDCSGKSLASVP-----TG-I--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TEEECTTSCCSSCC-----SC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEeCCCCcCccC-----cc-C--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            36899999886432     22 2  378999999999999887754    888999999999999999776677889999


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL  195 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  195 (263)
                      |++|++++|++++ +|...+..+++|++|++++|.+...
T Consensus        80 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           80 LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999999885 4443788999999999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.59  E-value=7.6e-15  Score=129.40  Aligned_cols=82  Identities=26%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCc--ccchhhhhcC----
Q 024731          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHI--SQLLQSIASF----  229 (263)
Q Consensus       156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~l~~l----  229 (263)
                      +|++|++++|++++ +|.    .+++|++|++++|.+++ +|.    .+++|++|++++|++++  .+ |..++.+    
T Consensus       318 ~L~~L~Ls~N~l~~-lp~----~~~~L~~L~L~~N~l~~-lp~----~l~~L~~L~L~~N~l~~l~~i-p~~l~~L~~n~  386 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPA----LPPRLERLIASFNHLAE-VPE----LPQNLKQLHVEYNPLREFPDI-PESVEDLRMNS  386 (454)
T ss_dssp             TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCCCC-CTTCCEEECCC
T ss_pred             cCCEEECCCCcccc-ccc----cCCcCCEEECCCCcccc-ccc----hhhhccEEECCCCCCCcCCCC-hHHHHhhhhcc
Confidence            44444444444442 332    13455555555555553 332    24556666666666655  33 4555544    


Q ss_pred             ---------CCCCEEEecCccccc--ccCc
Q 024731          230 ---------TSLKYLSMGFCTLTG--ALHG  248 (263)
Q Consensus       230 ---------~~L~~L~l~~n~l~~--~~p~  248 (263)
                               ++|++|++++|++++  .+|.
T Consensus       387 ~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          387 HLAEVPELPQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             ------------------------------
T ss_pred             cccccccccCcCCEEECCCCcCCccccchh
Confidence                     556666666666665  4444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=2.4e-15  Score=115.68  Aligned_cols=131  Identities=21%  Similarity=0.177  Sum_probs=106.7

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCc-CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      ..++.+++++|.+...      +. +..+. +|++|++++|.+++. +     .+..+++|++|++++|.+++..+..+.
T Consensus        19 ~~L~~L~l~~n~l~~i------~~-~~~~~~~L~~L~Ls~N~l~~~-~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI------EN-LGATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             TSCEEEECTTSCCCSC------CC-GGGGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             CCceEEEeeCCCCchh------HH-hhhcCCCCCEEECCCCCCCcc-c-----ccccCCCCCEEECCCCcccccCcchhh
Confidence            4688999999988632      22 34444 999999999999875 3     288999999999999999965445558


Q ss_pred             CCCCCCEEEcCCCcCCCCcCc-cccCCCCCCCEEEcCCCCCCCCCchh---hhcCCCCCcEEEcCCCCCCc
Q 024731          153 GLSSLRNLSLIGNRLIGSIDI-KGLDSLGNLEELDMSDNAINNLVIPK---ELHNFTNLEELILDDSDLHI  219 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l~~n~l~~  219 (263)
                      .+++|++|++++|.+. .+|. ..+..+++|++|++++|.+.. ++..   .+..+++|+.|++++|....
T Consensus        86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999999999986 4553 367889999999999999986 4542   37889999999999998753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=4e-18  Score=133.87  Aligned_cols=133  Identities=26%  Similarity=0.305  Sum_probs=97.6

Q ss_pred             cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (263)
                      .+..+++|++|++++|.+++. |.     +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|  .+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l-~~-----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~  112 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKI-SS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE  112 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCC-CC-----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHH
T ss_pred             HHhcCCCCCEEECCCCCCccc-cc-----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccc
Confidence            567788888888888888763 32     677788888888888887 567666667888888888888775 44  567


Q ss_pred             CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchh----------hhhcCCCCCEEEecCcccc
Q 024731          178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ----------SIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----------~l~~l~~L~~L~l~~n~l~  243 (263)
                      .+++|++|++++|.+++..+...+..+++|++|++++|++++.. |.          .+..+++|+.||  +|.++
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY-KENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH-HTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc-ccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            77888888888888876322123778888888888888876543 33          367788888776  66665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=2.3e-14  Score=110.07  Aligned_cols=106  Identities=22%  Similarity=0.256  Sum_probs=87.1

Q ss_pred             EEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        77 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      +.++++++++....     .. +  .++|++|++++|.+++..+..    +..+++|++|+|++|++++..+..|.++++
T Consensus        15 ~~l~~~~n~l~~iP-----~~-~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQNIRLASVP-----AG-I--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCSSCCSSCC-----SC-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cEEEeCCCCCCccC-----CC-c--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            46899999885432     22 2  278999999999999887754    889999999999999999765666789999


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL  195 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  195 (263)
                      |++|++++|++.+ +|...+..+++|++|++++|.+...
T Consensus        83 L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hhEEECCCCccce-eCHHHhccccCCCEEEeCCCCcccc
Confidence            9999999999985 5543688999999999999999873

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=8.6e-15  Score=133.47  Aligned_cols=67  Identities=24%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      ++|++|++++|.+++ +|    ..+++|+.|++++|.++. + |.   .+++|++|++++|+++ .+|. .+.++++|.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~-l-p~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~  287 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLTS-L-PM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSET  287 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSC-C-CC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTC
T ss_pred             CCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCCc-C-Cc---ccccCcEEeCCCCCCC-cCCH-HHhhccccC
Confidence            556666666666665 43    245677888888887773 4 43   5678888999999888 6776 455555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=1.6e-14  Score=130.60  Aligned_cols=122  Identities=22%  Similarity=0.253  Sum_probs=88.4

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  183 (263)
                      .|+.|++++|.+++. |.     +..+++|++|+|++|.++ .+|..++++++|++|++++|.+++ +|  .+..+++|+
T Consensus       442 ~L~~L~Ls~n~l~~l-p~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-CH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSSC-CC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred             CceEEEecCCCCCCC-cC-----ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence            577788888877763 32     667778888888888887 677778888888888888888775 55  677788888


Q ss_pred             EEEcCCCCCCCCC-chhhhcCCCCCcEEEcCCCCCCcccch---hhhhcCCCCCEEEe
Q 024731          184 ELDMSDNAINNLV-IPKELHNFTNLEELILDDSDLHISQLL---QSIASFTSLKYLSM  237 (263)
Q Consensus       184 ~L~L~~n~l~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l  237 (263)
                      +|++++|.+++.. |.. ++.+++|+.|++++|++++.. +   ..+..+++|+.|++
T Consensus       512 ~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~-~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE-GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS-SCTTHHHHHCTTCSEEEC
T ss_pred             EEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc-cHHHHHHHHCcccCccCC
Confidence            8888888887744 554 777888888888888876543 2   23445777777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=8e-18  Score=132.15  Aligned_cols=143  Identities=24%  Similarity=0.232  Sum_probs=117.7

Q ss_pred             ccCCcCCcEEEccCcccCCCCCc--ccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcccc
Q 024731           99 FTPFQQLESLYLIGNNIAGCVEN--EGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL  176 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  176 (263)
                      +.....++.++++.+.+.+..|.  .....+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|. .+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence            45566777778888888776654  111237889999999999999996 66 8889999999999999988 5776 67


Q ss_pred             CCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          177 DSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       177 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      ..+++|++|++++|.+++ ++ . +..+++|++|++++|++++......+..+++|++|++++|++++.+|.
T Consensus        90 ~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS-LS-G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC-HH-H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             hcCCcCCEEECcCCcCCc-CC-c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            778999999999999998 44 4 888999999999999998643125789999999999999999987664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.56  E-value=3.8e-16  Score=137.57  Aligned_cols=40  Identities=23%  Similarity=0.183  Sum_probs=19.0

Q ss_pred             CCCCcEEEcCCCCCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731          204 FTNLEELILDDSDLHISQ---LLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       204 l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      +++|++|++++|.+++..   ++..+..+++|++|++++|.++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            445555555555554321   1334444555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.48  E-value=2.9e-15  Score=128.74  Aligned_cols=167  Identities=17%  Similarity=0.157  Sum_probs=102.9

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccC--
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL--  151 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--  151 (263)
                      ..++.+++++|.+...+...+........++|++|++++|.++.......   ...+++|++|+|++|.+++.....+  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            35678888888775332211111111233678888888887754322221   2234577888888888875443333  


Q ss_pred             ---CCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCc---hhhhcCCCCCcEEEcCCCCCCccc
Q 024731          152 ---GGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVI---PKELHNFTNLEELILDDSDLHISQ  221 (263)
Q Consensus       152 ---~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~l~~n~l~~~~  221 (263)
                         ...++|++|+|++|.++..    ++. .+..+++|++|+|++|.+++...   ...+...++|++|++++|.+++..
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence               3457788888888877532    222 44567788888888888765221   112566678888888888887532


Q ss_pred             ---chhhhhcCCCCCEEEecCccccc
Q 024731          222 ---LLQSIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       222 ---~~~~l~~l~~L~~L~l~~n~l~~  244 (263)
                         +...+...++|++|++++|.+++
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence               13445567788888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=4.6e-14  Score=119.21  Aligned_cols=99  Identities=13%  Similarity=0.112  Sum_probs=80.9

Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCc-EEEcCCCCCCcccchhhhhcCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE-ELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      +++|+++++++|+++ .+|...|.++++|+.+++.+| ++. ++...|.++++|+ .+++.+ .++... +.+|..+++|
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccC
Confidence            678999999999877 677778999999999999998 655 6666799999999 999988 676444 7889999999


Q ss_pred             CEEEecCcccccccCccchhcHHHHH
Q 024731          233 KYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       233 ~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      +.++++.|.++ .|+...|.++++|.
T Consensus       300 ~~l~l~~n~i~-~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          300 RYVLATGDKIT-TLGDELFGNGVPSK  324 (329)
T ss_dssp             EEEEECSSCCC-EECTTTTCTTCCCC
T ss_pred             CEEEeCCCccC-ccchhhhcCCcchh
Confidence            99999999998 56664666555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.43  E-value=4.2e-13  Score=114.26  Aligned_cols=164  Identities=15%  Similarity=0.072  Sum_probs=109.0

Q ss_pred             EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccc-cCCCCCC
Q 024731           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSS  156 (263)
Q Consensus        78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~  156 (263)
                      .++-++++++..+     .. +  .+++++|++++|+|+...+.    .|.++++|++|+|++|++.+.+|. .|.++++
T Consensus        13 ~v~C~~~~Lt~iP-----~~-l--~~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X           13 VFLCQESKVTEIP-----SD-L--PRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             EEEEESTTCCSCC-----TT-C--CTTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             EEEecCCCCCccC-----cC-c--CCCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            4667777775432     22 2  35799999999999876554    389999999999999999766664 6788988


Q ss_pred             CCE-EEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC--------------------------CCcE
Q 024731          157 LRN-LSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT--------------------------NLEE  209 (263)
Q Consensus       157 L~~-L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~--------------------------~L~~  209 (263)
                      +++ +.+..|++....|. .+..+++|++|++++|.+... +...+....                          .++.
T Consensus        81 l~~~l~~~~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~  158 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  158 (350)
T ss_dssp             CCEEEEEEETTCCEECTT-SBCCCTTCCEEEEEEECCSSC-CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             hhhhhcccCCcccccCch-hhhhccccccccccccccccC-Cchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence            876 56677888754444 899999999999999998763 221122222                          3556


Q ss_pred             EEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731          210 LILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       210 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      |++++|+++ .+ +.......+|+++++++|+.-+.+|...+.++++|
T Consensus       159 L~L~~N~i~-~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L  204 (350)
T 4ay9_X          159 LWLNKNGIQ-EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP  204 (350)
T ss_dssp             EECCSSCCC-EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred             hcccccccc-CC-ChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence            666666665 23 33333455666777664332335665334444333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=7.8e-13  Score=112.31  Aligned_cols=105  Identities=19%  Similarity=0.170  Sum_probs=79.8

Q ss_pred             EEecCCC-CCccccccccccccccCCcCCcEEEccC-cccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCC
Q 024731           78 KLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (263)
Q Consensus        78 ~l~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  155 (263)
                      .++.+++ ++..     + +. +..+++|++|+|++ |.+.+..+..    |..+++|++|+|++|++++..|..|.+++
T Consensus        12 ~v~~~~~n~l~~-----i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           12 GLRCTRDGALDS-----L-HH-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             CEECCSSCCCTT-----T-TT-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             EEEcCCCCCCCc-----c-CC-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCc
Confidence            3577777 6643     2 23 77788889999986 8888766543    78888899999999998887777888888


Q ss_pred             CCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCC
Q 024731          156 SLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL  195 (263)
Q Consensus       156 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  195 (263)
                      +|++|+|++|++++ +|...+..++ |++|+|.+|.+...
T Consensus        81 ~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           81 RLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CCCEEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCEEeCCCCccce-eCHHHcccCC-ceEEEeeCCCccCC
Confidence            99999999998874 4543555554 88888888888753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=1.2e-12  Score=111.20  Aligned_cols=106  Identities=26%  Similarity=0.388  Sum_probs=83.9

Q ss_pred             cEEEccCc-ccCCCCCcccccccCCCCCCCEEEccC-CcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC
Q 024731          106 ESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE  183 (263)
Q Consensus       106 ~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~  183 (263)
                      ..++.+++ ++++ +|.     +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|. .|..+++|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCC
T ss_pred             CEEEcCCCCCCCc-cCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCC
Confidence            45688887 7765 342     67788899999986 999877777889999999999999998876555 788899999


Q ss_pred             EEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcc
Q 024731          184 ELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHIS  220 (263)
Q Consensus       184 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  220 (263)
                      +|+|++|.+++ +|+..+..++ |+.|++.+|.+...
T Consensus        84 ~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           84 RLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             EEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             EEeCCCCccce-eCHHHcccCC-ceEEEeeCCCccCC
Confidence            99999999987 5555455555 99999999988743

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.31  E-value=1.3e-13  Score=125.00  Aligned_cols=140  Identities=16%  Similarity=0.067  Sum_probs=87.4

Q ss_pred             CcCCcEEEccCcccCCCCCcccccccC-CCCCCCEEEcc----CCcCCcc-----ccccCCCCCCCCEEEcCCCc--CCC
Q 024731          102 FQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLD----YNHFNNS-----IFSSLGGLSSLRNLSLIGNR--LIG  169 (263)
Q Consensus       102 l~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~L~~n~--l~~  169 (263)
                      +++|++|+++.|.+++.....    +. .+++|++|+++    .|.+++.     ++..+.++++|++|++++|.  +++
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~----l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLES----IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHH----HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             CccCeEEEeecCCccHHHHHH----HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            455555555555544322221    22 25566666664    4555532     23334556677777776433  333


Q ss_pred             CcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccc
Q 024731          170 SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGA  245 (263)
Q Consensus       170 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~  245 (263)
                      ..+......+++|++|++++|.+++......+..+++|++|++++|.+++..++..+..+++|++|++++|++++.
T Consensus       453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            3222122347889999999998876433443678899999999999987665355567889999999999998754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=1.6e-13  Score=117.83  Aligned_cols=164  Identities=18%  Similarity=0.175  Sum_probs=115.2

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCccccccc-CCCCCCCEEEccCCcCCcc----cc
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNS----IF  148 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~----~p  148 (263)
                      ..++.+++++|.+...+..    .....+++|++|++++|.++..........+ ...++|++|+|++|.+++.    ++
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLR----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHH----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHH----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            5899999999998644331    2234467899999999999755433322223 4578999999999999753    44


Q ss_pred             ccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCCCccc
Q 024731          149 SSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDLHISQ  221 (263)
Q Consensus       149 ~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~  221 (263)
                      ..+...++|++|+|++|.+.+.    ++. .+...++|++|+|++|.+++....   ..+...++|++|++++|.+++..
T Consensus       177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             HHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            5557889999999999998642    233 566778999999999999763211   12556789999999999998765


Q ss_pred             chhhhhcCCC-----CCEEE--ecCcccc
Q 024731          222 LLQSIASFTS-----LKYLS--MGFCTLT  243 (263)
Q Consensus       222 ~~~~l~~l~~-----L~~L~--l~~n~l~  243 (263)
                       ...+..+..     |+.+.  +..|.++
T Consensus       256 -~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          256 -RQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             -HHHHHHCC------CEEECCCC----CH
T ss_pred             -HHHHHHHhcCCCccchhhHhhhcCCccC
Confidence             556655432     55666  5666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=4.1e-11  Score=101.03  Aligned_cols=103  Identities=14%  Similarity=0.115  Sum_probs=89.2

Q ss_pred             CCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCC-EEEcCCCCCCCCCchhhhcCCCCCc
Q 024731          130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLE-ELDMSDNAINNLVIPKELHNFTNLE  208 (263)
Q Consensus       130 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~l~~L~  208 (263)
                      +++|+++++++|+++...+..|.++.+|+.+++.+| +. .++...|.++++|+ .+++.+ .++. ++...|.++++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCC
Confidence            689999999999999666668999999999999998 54 57777999999999 999998 6666 5555699999999


Q ss_pred             EEEcCCCCCCcccchhhhhcCCCCCEEEe
Q 024731          209 ELILDDSDLHISQLLQSIASFTSLKYLSM  237 (263)
Q Consensus       209 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  237 (263)
                      .+++..|.++... +.+|.++++|+.++.
T Consensus       301 ~l~l~~n~i~~I~-~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKITTLG-DELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred             EEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence            9999999998555 779999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.25  E-value=1.2e-12  Score=118.74  Aligned_cols=90  Identities=11%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             EEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCC----ccccccC
Q 024731           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN----NSIFSSL  151 (263)
Q Consensus        76 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l  151 (263)
                      ++.++++++...  ....+ ......+++|++|++++|.+++.........+..+++|++|++++|.++    +.++..+
T Consensus       140 L~~L~L~~~~~~--~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~  216 (592)
T 3ogk_B          140 LETLKLDKCSGF--TTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA  216 (592)
T ss_dssp             CCEEEEESCEEE--EHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred             CcEEECcCCCCc--CHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence            777777766411  10000 1123456777777777777654422111112345666777777766665    2334444


Q ss_pred             CCCCCCCEEEcCCCcCC
Q 024731          152 GGLSSLRNLSLIGNRLI  168 (263)
Q Consensus       152 ~~l~~L~~L~L~~n~l~  168 (263)
                      .++++|++|++++|.+.
T Consensus       217 ~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             HHCTTCCEEECSSCBGG
T ss_pred             hhCCCCcEEeccCccHH
Confidence            55666666666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.04  E-value=6.2e-11  Score=107.37  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=19.3

Q ss_pred             CCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCc
Q 024731          204 FTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC  240 (263)
Q Consensus       204 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  240 (263)
                      +++|++|++++|.+++..+...+..+++|++|++++|
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            4556666666666544332223445555555555555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.04  E-value=2.3e-12  Score=105.07  Aligned_cols=80  Identities=28%  Similarity=0.327  Sum_probs=59.0

Q ss_pred             CCCCCCCEEEcCCCcCCC--CcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC--CCcEEEcCCCCCCcccch----
Q 024731          152 GGLSSLRNLSLIGNRLIG--SIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT--NLEELILDDSDLHISQLL----  223 (263)
Q Consensus       152 ~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~----  223 (263)
                      .++++|++|+|++|.+++  .+|. .+..+++|++|+|++|.+++.  .. +..+.  +|++|++++|.+.+.. |    
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~-l~~l~~l~L~~L~L~~Npl~~~~-~~~~~  241 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RE-LDKIKGLKLEELWLDGNSLCDTF-RDQST  241 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GG-GGGGTTSCCSEEECTTSTTGGGC-SSHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hh-hhhcccCCcceEEccCCcCcccc-Ccchh
Confidence            457788888888888876  3444 556788899999999988874  22 33344  8899999999987643 2    


Q ss_pred             ---hhhhcCCCCCEEE
Q 024731          224 ---QSIASFTSLKYLS  236 (263)
Q Consensus       224 ---~~l~~l~~L~~L~  236 (263)
                         ..+..+++|+.||
T Consensus       242 y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          242 YISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHCTTCCEES
T ss_pred             HHHHHHHHCcccCeEC
Confidence               3467888988876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.03  E-value=9e-12  Score=112.90  Aligned_cols=89  Identities=21%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             CCCCCCCEEEcCCCcCCCCcCccccCC-CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCC
Q 024731          152 GGLSSLRNLSLIGNRLIGSIDIKGLDS-LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFT  230 (263)
Q Consensus       152 ~~l~~L~~L~L~~n~l~~~~p~~~~~~-l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~  230 (263)
                      ..+++|++|++++ .+++..+. .+.. +++|++|++++|.+++..+......+++|++|++++|.+++.........++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFE-YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHH-HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHH-HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            3445555555544 33322221 2222 5566666666666654333321245666666666666665433122334466


Q ss_pred             CCCEEEecCccc
Q 024731          231 SLKYLSMGFCTL  242 (263)
Q Consensus       231 ~L~~L~l~~n~l  242 (263)
                      +|++|++++|++
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            666666666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.95  E-value=2.5e-10  Score=88.28  Aligned_cols=116  Identities=18%  Similarity=0.176  Sum_probs=72.7

Q ss_pred             cCCCCCCCEEEccCC-cCCcc----ccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCc
Q 024731          127 LSRLNNLKFLYLDYN-HFNNS----IFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVI  197 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~  197 (263)
                      +...++|++|+|++| .+...    +...+...++|++|+|++|.+...    +.. .+...++|++|+|++|.+.....
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHHH
Confidence            455566666666666 55532    233445556666677766665432    122 34455677888888887765311


Q ss_pred             ---hhhhcCCCCCcEEEc--CCCCCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731          198 ---PKELHNFTNLEELIL--DDSDLHISQ---LLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       198 ---~~~l~~l~~L~~L~l--~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                         ...+...++|++|++  ++|.+....   +.+.+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               122566778888888  778887543   1345666788999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.93  E-value=1.4e-10  Score=89.62  Aligned_cols=120  Identities=20%  Similarity=0.125  Sum_probs=89.9

Q ss_pred             cccCCcCCcEEEccCc-ccCCCCCcccccccCCCCCCCEEEccCCcCCcc----ccccCCCCCCCCEEEcCCCcCCCC--
Q 024731           98 LFTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIGS--  170 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~--  170 (263)
                      .+...+.|++|++++| .+...........+...++|++|+|++|.+++.    +...+...++|++|+|++|.+...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4567788999999998 887544333445577888999999999999853    334455668899999999998643  


Q ss_pred             --cCccccCCCCCCCEEEc--CCCCCCCCCc---hhhhcCCCCCcEEEcCCCCCC
Q 024731          171 --IDIKGLDSLGNLEELDM--SDNAINNLVI---PKELHNFTNLEELILDDSDLH  218 (263)
Q Consensus       171 --~p~~~~~~l~~L~~L~L--~~n~l~~~~~---~~~l~~l~~L~~L~l~~n~l~  218 (263)
                        +.. .+...++|++|+|  ++|.+.....   ...+...++|++|++++|.+.
T Consensus       111 ~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              233 6677889999999  8899876421   123566789999999999885

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.86  E-value=5.9e-09  Score=90.23  Aligned_cols=150  Identities=12%  Similarity=0.133  Sum_probs=82.6

Q ss_pred             cccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCC--------
Q 024731           94 MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN--------  165 (263)
Q Consensus        94 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--------  165 (263)
                      +....|..+++|+.+++++|.++......    |. ..+|+.+.+..+ ++......|.++++|+.+++..+        
T Consensus       171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~a  244 (401)
T 4fdw_A          171 LKEDIFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEA  244 (401)
T ss_dssp             ECSSTTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTT
T ss_pred             ehHHHhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccc
Confidence            34456777888888888877665433321    33 345555555532 33333344555555555555433        


Q ss_pred             -------------cCCCCcCccccCCCCCCCEEEcCCCCCC----CCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhc
Q 024731          166 -------------RLIGSIDIKGLDSLGNLEELDMSDNAIN----NLVIPKELHNFTNLEELILDDSDLHISQLLQSIAS  228 (263)
Q Consensus       166 -------------~l~~~~p~~~~~~l~~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~  228 (263)
                                   .+. .++...|..+++|+.+++.+|.+.    ..++...|..+++|+.+++.. .++... ..+|..
T Consensus       245 F~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~-~~aF~~  321 (401)
T 4fdw_A          245 FRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG-QGLLGG  321 (401)
T ss_dssp             TTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-TTTTTT
T ss_pred             cccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-hhhhcC
Confidence                         122 233446666777777777666553    113344466777777777763 354333 556777


Q ss_pred             CCCCCEEEecCcccccccCccchhcH
Q 024731          229 FTSLKYLSMGFCTLTGALHGQGKLRV  254 (263)
Q Consensus       229 l~~L~~L~l~~n~l~~~~p~~~l~~L  254 (263)
                      +++|+.+++..| ++ .|+...|.++
T Consensus       322 c~~L~~l~lp~~-l~-~I~~~aF~~~  345 (401)
T 4fdw_A          322 NRKVTQLTIPAN-VT-QINFSAFNNT  345 (401)
T ss_dssp             CCSCCEEEECTT-CC-EECTTSSSSS
T ss_pred             CCCccEEEECcc-cc-EEcHHhCCCC
Confidence            777777777544 44 4544344433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.9e-09  Score=91.94  Aligned_cols=139  Identities=22%  Similarity=0.253  Sum_probs=92.7

Q ss_pred             cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC--CCCCCCEEEcCC--CcCCCC---
Q 024731           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG--GLSSLRNLSLIG--NRLIGS---  170 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~---  170 (263)
                      .+..+++|+.|++++|.-. ..+.     +. +++|++|++..+.++......+.  .+++|++|+|+.  |...+.   
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-----~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-----KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-----CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-----cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            4567789999999887311 1121     32 78899999998888754444443  689999999853  222111   


Q ss_pred             --cCcccc--CCCCCCCEEEcCCCCCCCCCchhhh--cCCCCCcEEEcCCCCCCccc---chhhhhcCCCCCEEEecCcc
Q 024731          171 --IDIKGL--DSLGNLEELDMSDNAINNLVIPKEL--HNFTNLEELILDDSDLHISQ---LLQSIASFTSLKYLSMGFCT  241 (263)
Q Consensus       171 --~p~~~~--~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~  241 (263)
                        +.. .+  ..+++|++|++.+|.+.+..+....  ..+++|++|+++.|.+.+..   ++..+..+++|+.|++++|.
T Consensus       240 ~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          240 NVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             GGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence              111 22  3578999999999988753322211  25788999999999987643   13344567899999999998


Q ss_pred             ccc
Q 024731          242 LTG  244 (263)
Q Consensus       242 l~~  244 (263)
                      ++.
T Consensus       319 i~d  321 (362)
T 2ra8_A          319 LSD  321 (362)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.81  E-value=3.6e-08  Score=85.30  Aligned_cols=140  Identities=12%  Similarity=0.139  Sum_probs=96.8

Q ss_pred             cccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCC----CCc
Q 024731           96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI----GSI  171 (263)
Q Consensus        96 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~----~~~  171 (263)
                      ...|..+++|+.+++..+ ++.....    .|.+ .+|+.+.+. +.++......|.++++|+.+++.+|.+.    ..+
T Consensus       219 ~~aF~~~~~L~~l~l~~~-l~~I~~~----aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I  291 (401)
T 4fdw_A          219 SQAFLKTSQLKTIEIPEN-VSTIGQE----AFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI  291 (401)
T ss_dssp             TTTTTTCTTCCCEECCTT-CCEECTT----TTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred             hhHhhCCCCCCEEecCCC-ccCcccc----cccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence            344566666666666553 3222221    2444 567777773 4455444668889999999999888754    135


Q ss_pred             CccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          172 DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       172 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +...|.++++|+.+++.+ .++. ++...|.++++|+.+.+..| ++... ..+|..+ +|+.+++++|.+. .++.
T Consensus       292 ~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~~c~~L~~l~lp~~-l~~I~-~~aF~~~-~L~~l~l~~n~~~-~l~~  362 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIPE-SIRI-LGQGLLGGNRKVTQLTIPAN-VTQIN-FSAFNNT-GIKEVKVEGTTPP-QVFE  362 (401)
T ss_dssp             CTTTTTTCTTCCEECCCT-TCCE-ECTTTTTTCCSCCEEEECTT-CCEEC-TTSSSSS-CCCEEEECCSSCC-BCCC
T ss_pred             CHHHhhCCccCCeEEeCC-ceEE-EhhhhhcCCCCccEEEECcc-ccEEc-HHhCCCC-CCCEEEEcCCCCc-cccc
Confidence            666889999999999984 4655 55556899999999999665 55333 6788889 9999999998876 3443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.72  E-value=2.1e-09  Score=91.70  Aligned_cols=142  Identities=18%  Similarity=0.149  Sum_probs=93.8

Q ss_pred             ccCCcCCcEEEccCcccCCC----C-CcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCc
Q 024731           99 FTPFQQLESLYLIGNNIAGC----V-ENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI  173 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~----~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  173 (263)
                      ...+++|+.|.+..+.....    . .......+..+|+|+.|++++|.-. .++. + .+++|++|++..+.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            45788999999976543210    0 0111123567899999999988322 2333 3 388999999999887543221


Q ss_pred             ccc--CCCCCCCEEEcCC--CCCCCCC-c---hhhh--cCCCCCcEEEcCCCCCCcccchhhhh---cCCCCCEEEecCc
Q 024731          174 KGL--DSLGNLEELDMSD--NAINNLV-I---PKEL--HNFTNLEELILDDSDLHISQLLQSIA---SFTSLKYLSMGFC  240 (263)
Q Consensus       174 ~~~--~~l~~L~~L~L~~--n~l~~~~-~---~~~l--~~l~~L~~L~l~~n~l~~~~~~~~l~---~l~~L~~L~l~~n  240 (263)
                       .+  ..+++|++|+|+.  |...+.. .   ...+  ..+++|++|++.+|.+.+.. +..+.   .+++|++|+|+.|
T Consensus       212 -~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          212 -DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             -HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSS
T ss_pred             -HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCC
Confidence             23  3789999999863  2222211 0   0112  35799999999999997654 44444   5789999999999


Q ss_pred             ccccc
Q 024731          241 TLTGA  245 (263)
Q Consensus       241 ~l~~~  245 (263)
                      .+++.
T Consensus       290 ~L~d~  294 (362)
T 2ra8_A          290 VLTDE  294 (362)
T ss_dssp             CCBHH
T ss_pred             CCChH
Confidence            99864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.63  E-value=3e-08  Score=80.69  Aligned_cols=84  Identities=24%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             CCCCCCCEEEccCCcCCc--cccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCch------h
Q 024731          128 SRLNNLKFLYLDYNHFNN--SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP------K  199 (263)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~------~  199 (263)
                      .++++|+.|+|++|.+++  .+|..+..+++|++|+|++|.+.+.-....+..+ +|++|+|++|.+.+.+|.      .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            468899999999999997  4556677899999999999999864222234444 999999999999875542      2


Q ss_pred             hhcCCCCCcEEEc
Q 024731          200 ELHNFTNLEELIL  212 (263)
Q Consensus       200 ~l~~l~~L~~L~l  212 (263)
                      .+..+++|+.||=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            3678899998863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.47  E-value=8.5e-08  Score=72.85  Aligned_cols=84  Identities=19%  Similarity=0.260  Sum_probs=51.1

Q ss_pred             CCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCc-CCCCcCccccCCC----CCCCEEEcCCCC-CCCCCchhhhcCC
Q 024731          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGSIDIKGLDSL----GNLEELDMSDNA-INNLVIPKELHNF  204 (263)
Q Consensus       131 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~l~~l  204 (263)
                      .+|++||++++.++...-..+.++++|++|+|++|. +++.-- ..+..+    ++|++|++++|. +++..... +.++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcC
Confidence            467888888888776555666777777777777775 332111 133332    356777777664 55433332 5566


Q ss_pred             CCCcEEEcCCCC
Q 024731          205 TNLEELILDDSD  216 (263)
Q Consensus       205 ~~L~~L~l~~n~  216 (263)
                      ++|++|+++++.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            677777776664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=1.3e-07  Score=71.86  Aligned_cols=83  Identities=19%  Similarity=0.253  Sum_probs=41.1

Q ss_pred             CCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCc-CCccccccCCCC----CCCCEEEcCCCc-CCCCcCccccC
Q 024731          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGGL----SSLRNLSLIGNR-LIGSIDIKGLD  177 (263)
Q Consensus       104 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~~~~  177 (263)
                      +|+.||++++.++..    ....+..+++|++|+|++|. +++..-..++.+    ++|++|+|++|. ++..-- ..+.
T Consensus        62 ~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred             eEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence            456666666554422    12234556666666666653 454333344443    246666666654 332211 1344


Q ss_pred             CCCCCCEEEcCCCC
Q 024731          178 SLGNLEELDMSDNA  191 (263)
Q Consensus       178 ~l~~L~~L~L~~n~  191 (263)
                      .+++|++|+++++.
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            55666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.09  E-value=2.1e-05  Score=67.54  Aligned_cols=108  Identities=9%  Similarity=0.147  Sum_probs=56.6

Q ss_pred             cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN  206 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  206 (263)
                      |..+.+|+.+.+..+..+ .....|.+++.|+.+.+..+ +. .++...|.++.+|+.+++..+ ++. +....|.++++
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTT
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCC
Confidence            555666666666544322 33345556666666666432 22 344445666666666666543 332 33334666666


Q ss_pred             CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcc
Q 024731          207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCT  241 (263)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  241 (263)
                      |+.+.+..+ ++... ..+|.++++|+.+++.++.
T Consensus       336 L~~i~ip~s-v~~I~-~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          336 LERIAIPSS-VTKIP-ESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CCEEEECTT-CCBCC-GGGGTTCTTCCEEEESSCH
T ss_pred             CCEEEECcc-cCEEh-HhHhhCCCCCCEEEECCce
Confidence            666666443 33222 4456666666666666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.04  E-value=1.2e-06  Score=67.78  Aligned_cols=114  Identities=14%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             CCCCCCEEEccCC-cCCc----cccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCch-
Q 024731          129 RLNNLKFLYLDYN-HFNN----SIFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVIP-  198 (263)
Q Consensus       129 ~l~~L~~L~Ls~n-~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~-  198 (263)
                      +-+.|++|+|++| .+..    .+.+.+..-..|+.|+|++|.+...    +.. .+..-++|++|+|++|.|...... 
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHHHHHH
Confidence            3444444555443 4432    1223333444555555555554321    111 333445666666666666542111 


Q ss_pred             --hhhcCCCCCcEEEcCCC---CCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731          199 --KELHNFTNLEELILDDS---DLHISQ---LLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       199 --~~l~~l~~L~~L~l~~n---~l~~~~---~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                        ..+...+.|++|+|++|   .+....   +.+.+..-+.|+.|+++.|.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              12445566777777654   333221   1345566677888888776653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.99  E-value=4.7e-06  Score=64.41  Aligned_cols=119  Identities=11%  Similarity=0.059  Sum_probs=85.6

Q ss_pred             ccCCcCCcEEEccCc-ccCCCCCcccccccCCCCCCCEEEccCCcCCccccc----cCCCCCCCCEEEcCCCcCCCC---
Q 024731           99 FTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS----SLGGLSSLRNLSLIGNRLIGS---  170 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~---  170 (263)
                      +..-+.|++|+|++| .+.......+...+..-..|++|+|++|.+.+....    .+..-+.|++|+|++|.+...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            456688999999986 776443334455678889999999999999854333    344568999999999998643   


Q ss_pred             -cCccccCCCCCCCEEEcCCCC---CCCCC---chhhhcCCCCCcEEEcCCCCCC
Q 024731          171 -IDIKGLDSLGNLEELDMSDNA---INNLV---IPKELHNFTNLEELILDDSDLH  218 (263)
Q Consensus       171 -~p~~~~~~l~~L~~L~L~~n~---l~~~~---~~~~l~~l~~L~~L~l~~n~l~  218 (263)
                       +.. .+..-+.|++|+|++|.   +....   ....+...+.|+.|+++.|.+.
T Consensus       117 ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence             222 56667789999998763   33211   1123666789999999988653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.90  E-value=0.00011  Score=62.54  Aligned_cols=131  Identities=15%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             ccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCC
Q 024731           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDS  178 (263)
Q Consensus        99 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~  178 (263)
                      +.....++.+.+..+ +.....    ..+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +. .++...+..
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~----~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~  284 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGD----GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSG  284 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECT----TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTT
T ss_pred             cccccccceeeeccc-eeEEcc----ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccc
Confidence            445556666666443 211111    23667777888887665 44344556777778888887654 22 355557777


Q ss_pred             CCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCc
Q 024731          179 LGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFC  240 (263)
Q Consensus       179 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  240 (263)
                      +.+|+.+.+.++.++. +....|.++.+|+.+.+..+ ++... ..+|.++++|+.+.+..+
T Consensus       285 c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          285 CSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA-LKTIQ-VYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccce-ehhhhhcCCCCCCEEEcCcc-ccEEH-HHHhhCCCCCCEEEECCc
Confidence            8888888887777765 44445788888888888654 44222 556777888887777544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.84  E-value=0.00012  Score=62.75  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN  206 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  206 (263)
                      +..+..++.+....+.+.   ...|..+.+|+.+.+..+ +. .++...|.++.+|+.+++..+ ++. +....|.++++
T Consensus       272 F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~  344 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTS  344 (394)
T ss_dssp             TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTT
T ss_pred             cccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCC
Confidence            455555555555444322   235667788888888665 33 455557888888999888654 544 44555888889


Q ss_pred             CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCc
Q 024731          207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFC  240 (263)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  240 (263)
                      |+.+.+..+ ++... ..+|.++++|+.+++..+
T Consensus       345 L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          345 LSNINFPLS-LRKIG-ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECCCTT-CCEEC-TTTBTTCTTCCEEEEEGG
T ss_pred             CCEEEECcc-ccEeh-HHHhhCCCCCCEEEECCC
Confidence            999988776 55333 667888899999988755

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.82  E-value=0.00011  Score=63.04  Aligned_cols=133  Identities=14%  Similarity=0.206  Sum_probs=81.4

Q ss_pred             cccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccc
Q 024731           96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (263)
Q Consensus        96 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  175 (263)
                      ...|..+..|+.+.+..+...  +..   ..|.++++|+.+.+. +.++......|.++.+|+.+++..+ ++ .+....
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~--I~~---~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a  329 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS--IGT---GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDA  329 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE--ECT---TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred             cceeeecccccEEecccccce--ecC---cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhH
Confidence            345667777777777654321  111   237778888888886 3455344557788888888888765 33 455557


Q ss_pred             cCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCccc
Q 024731          176 LDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTL  242 (263)
Q Consensus       176 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  242 (263)
                      |.++.+|+.+.+..+ ++. +....|.++++|+.+++.++...    ...+....+|+.+.+..|.+
T Consensus       330 F~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC----------
T ss_pred             hhCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCCCE
Confidence            888888888888654 544 45556888888888888876432    34566677788777766544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.68  E-value=0.00022  Score=60.74  Aligned_cols=125  Identities=11%  Similarity=0.148  Sum_probs=91.9

Q ss_pred             cccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccc
Q 024731           96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (263)
Q Consensus        96 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  175 (263)
                      ...+..+..|+.+.+..+ ++.....    .+.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.+. .++...
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~----aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~a  305 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSF----LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRV  305 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTT----TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTT
T ss_pred             cccccCCccceEEEcCCC-ccEeCcc----ccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhh
Confidence            445778889999998765 4332222    3788999999999754 55344567889999999999988776 466668


Q ss_pred             cCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCC
Q 024731          176 LDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTS  231 (263)
Q Consensus       176 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  231 (263)
                      |.++.+|+.+.+..+ ++. +....|.++++|+.+.+..+ ++... ..+|.+++.
T Consensus       306 F~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~-v~~I~-~~aF~~c~~  357 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPKS-ITLIE-SGAFEGSSI  357 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCTT-CCEEC-TTTTTTSSC
T ss_pred             hcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECCc-cCEEc-hhHhhCCCC
Confidence            999999999999755 544 44556999999999999765 54222 556766643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.64  E-value=0.00033  Score=60.09  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=78.2

Q ss_pred             ccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC
Q 024731          126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT  205 (263)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  205 (263)
                      .+..+.+|+.+.+..+ ++......|.++.+|+.+++..+ ++ .++...|.++.+|+.+++..+ ++. +....|.+++
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~  366 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCI  366 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCC
Confidence            3778899999999765 55445668999999999999765 44 566668999999999999876 554 5555699999


Q ss_pred             CCcEEEcCCCCCCcccchhhhhcCCCCCEE
Q 024731          206 NLEELILDDSDLHISQLLQSIASFTSLKYL  235 (263)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  235 (263)
                      +|+.+++..+ ++ .+ ...+.++++|+.+
T Consensus       367 ~L~~i~lp~~-~~-~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          367 NLKKVELPKR-LE-QY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEEEEEGG-GG-GG-GGGBCTTCEEEEE
T ss_pred             CCCEEEECCC-CE-Eh-hheecCCCCCcEE
Confidence            9999999764 32 23 4567788887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.06  E-value=0.0014  Score=47.00  Aligned_cols=57  Identities=16%  Similarity=0.154  Sum_probs=44.7

Q ss_pred             CEEEcCCCcCC-CCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCC
Q 024731          158 RNLSLIGNRLI-GSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH  218 (263)
Q Consensus       158 ~~L~L~~n~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  218 (263)
                      ..++-+++.++ ..+|. .+  -++|++|+|++|.|+. ++...|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~-~l--p~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT-AF--PVDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCS-CC--CTTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCC-CC--CcCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCee
Confidence            47788888876 24664 32  2469999999999988 66666888999999999999885

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.03  E-value=0.0018  Score=46.48  Aligned_cols=36  Identities=25%  Similarity=0.160  Sum_probs=16.9

Q ss_pred             CCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcC
Q 024731          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL  167 (263)
Q Consensus       132 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  167 (263)
                      +|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            345555555555433333344444555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
              + S  +  + L  L L  NNI        +  +S L  L+ L+   N    S  SSL
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSL 347

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNA 191
             L+++  LS   N++        L +L  + +L ++D A
Sbjct: 348 ANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 40/224 (17%)

Query: 40  HFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLF 99
           +   D + L N    +       +   +        +  L   + +  +     +     
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI----- 217

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
                L+ L L GN +      + + TL+ L NL  L L  N  +N     L GL+ L  
Sbjct: 218 --LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE 267

Query: 160 LSLIGNRLIGSIDIKGLDS-------------------LGNLEELDMSDNAINNLVIPKE 200
           L L  N++     + GL +                   L NL  L +  N I+++     
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---P 324

Query: 201 LHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTG 244
           + + T L+ L   ++ +     + S+A+ T++ +LS G   ++ 
Sbjct: 325 VSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSD 189
           L NL +L L +N+ ++     +  L+ L+ L    N++     +  L +L N+  L    
Sbjct: 306 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGH 360

Query: 190 NAINNLVIPKELHNFTNLEELILDD 214
           N I++L     L N T + +L L+D
Sbjct: 361 NQISDLT---PLANLTRITQLGLND 382

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 5e-06
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 15/130 (11%)

Query: 108 LYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167
           L+L   ++        L  L +L  +  L L +N     + +    L++LR L ++    
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHLDLSHNR----LRALPPALAALRCLEVLQASD 52

Query: 168 IGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH-----ISQL 222
               ++ G+ +L  L+EL + +N +      + L +   L  L L  + L        +L
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 223 LQSIASFTSL 232
            + + S +S+
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN 193
           + L+L +     ++   L  L  + +L L  NRL          +L  L  L++   + N
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDN 53

Query: 194 NLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLR 253
            L     + N   L+EL+L ++ L  S  +Q + S   L  L++   +L      Q +L 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L L  N +           L+ L  L+   L  +         +  L  L+
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLE--VLQASDNALENVDGVANLPRLQ 68

Query: 159 NLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNL--VIPKELHNFTNLEELI 211
            L L  NRL  S  I+ L S   L  L++  N++     +  +      ++  ++
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 27 CLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTTG--RVIKLDLR 82
          C  Q++ ALLQ++    +   L + W+     +DCC   W  V C+  T   RV  LDL 
Sbjct: 3  CNPQDKQALLQIKKDLGNPTTLSS-WLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 83 D 83
           
Sbjct: 59 G 59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 5/128 (3%)

Query: 40  HFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLF 99
              N           + N +       +   D +            +        +    
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
              + L  L L  N I G +       L++L  L  L + +N+    I    G L     
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDV 295

Query: 160 LSLIGNRL 167
            +   N+ 
Sbjct: 296 SAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDN 190
            L  N    ++   L  L  L +L++  N L G   I    +L   +    ++N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAYANN 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 24/139 (17%), Positives = 41/139 (29%), Gaps = 8/139 (5%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L L  N I    + +       L NL  L L  N  +     +   L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 165 NRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ 224
           N+L    +         L+EL + +N I  +           +   +  +          
Sbjct: 89  NQLKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 225 SIASFTSLKYLSMGFCTLT 243
           +      L Y+ +    +T
Sbjct: 145 AFQGMKKLSYIRIADTNIT 163

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 20/186 (10%), Positives = 42/186 (22%), Gaps = 11/186 (5%)

Query: 22  WWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
                        +          +     ++      +       +   +   +   D 
Sbjct: 175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 234

Query: 82  RDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
             T   E  +      +        S             NE         +L+ L +   
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS-- 292

Query: 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKEL 201
             NN +         L  L    N L   +     +   NL++L +  N +     P   
Sbjct: 293 --NNKLIELPALPPRLERLIASFNHL-AEVP----ELPQNLKQLHVEYNPLREF--PDIP 343

Query: 202 HNFTNL 207
            +  +L
Sbjct: 344 ESVEDL 349

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 23/155 (14%), Positives = 39/155 (25%), Gaps = 1/155 (0%)

Query: 22  WWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
             +E    Q    L  L         LQ+  +  +        +      T+  +  L  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 82  RDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
                    +     +L              +     +       L+ L NL  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGL 176
               +I     G   L    L GN  + + +I   
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYF 216

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 9e-04
 Identities = 9/68 (13%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDD---SDLHISQLLQSIASFTSLKYLSM 237
           +++ LD+    +++    + L      + + LDD   ++     +  ++    +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 238 GFCTLTGA 245
               L   
Sbjct: 63  RSNELGDV 70

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 149 SSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLE 208
              G L S   ++    R      +    S   ++ +D+S++ I    +   L   + L+
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 209 ELILDDSDLHISQLLQSIASFTSLKYLSMGFC 240
            L L+   L    ++ ++A  ++L  L++  C
Sbjct: 75  NLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGC 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.27
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.23
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.08
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.03
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.88
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.9

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=7.1e-36  Score=249.80  Aligned_cols=220  Identities=25%  Similarity=0.383  Sum_probs=159.6

Q ss_pred             CCcHHHHHHHHHHhhhCCCCCCCCCCCcCCCCCCCCC--CCCceEEcCCC--CcEEEEecCCCCCccccccccccccccC
Q 024731           26 GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCC--QWERVECNDTT--GRVIKLDLRDTRNWESAEWYMNASLFTP  101 (263)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~~~~~~~~~W~~~~~~~~~c--~w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~  101 (263)
                      -|.++|++||++||+++.++. .+++|.   .++|||  .|.||+|+...  .||++|+|+++.+.  |...+ +..+++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~--g~~~l-p~~l~~   74 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP--KPYPI-PSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCS--SCEEC-CGGGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCC--CCCCC-ChHHhc
Confidence            499999999999999998554 689997   467999  49999998633  38999999999885  32223 456889


Q ss_pred             CcCCcEEEccC-cccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731          102 FQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (263)
Q Consensus       102 l~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  180 (263)
                      +++|++|++++ |++.|.+|..    +.++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|. .+..++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~----i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~  149 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLP  149 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCT
T ss_pred             Cccccccccccccccccccccc----cccccccchhhhccccccccccccccchhhhcccccccccccccCch-hhccCc
Confidence            99999999986 7888888764    78888888888888887765555455555555555555544444443 444444


Q ss_pred             CCCEEEcCCCCCCCCCch--------------------------------------------------------------
Q 024731          181 NLEELDMSDNAINNLVIP--------------------------------------------------------------  198 (263)
Q Consensus       181 ~L~~L~L~~n~l~~~~~~--------------------------------------------------------------  198 (263)
                      .++++++++|.+.+.+|.                                                              
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~  229 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             ccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            444444444433222111                                                              


Q ss_pred             --------hhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHHHH
Q 024731          199 --------KELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAFMI  260 (263)
Q Consensus       199 --------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~~~  260 (263)
                              ..+..+++|+.|++++|+++|.+ |+.++++++|++|+|++|+++|.+|.  +.++++|..+
T Consensus       230 ~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~i-P~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l  296 (313)
T d1ogqa_         230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVS  296 (313)
T ss_dssp             SSEECCBGGGCCCCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGG
T ss_pred             cccccccccccccccccccccCccCeecccC-ChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHH
Confidence                    02556788999999999999888 99999999999999999999999997  3445554433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-21  Score=157.66  Aligned_cols=159  Identities=22%  Similarity=0.216  Sum_probs=127.1

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.|+|++|.+..     +.+..|..+++|++|++++|.++.. +.     +..+++|++|++++|+++ ..+..+.+
T Consensus        31 ~~l~~L~Ls~N~i~~-----l~~~~f~~l~~L~~L~L~~N~l~~l-~~-----~~~l~~L~~L~Ls~N~l~-~~~~~~~~   98 (266)
T d1p9ag_          31 KDTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRAELTKL-QV-----DGTLPVLGTLDLSHNQLQ-SLPLLGQT   98 (266)
T ss_dssp             TTCCEEECTTSCCSE-----EEGGGGTTCTTCCEEECTTSCCCEE-EC-----CSCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred             cCCCEEECcCCcCCC-----cCHHHhhcccccccccccccccccc-cc-----cccccccccccccccccc-cccccccc
Confidence            468899999998863     3455688999999999999998753 32     577899999999999998 45677888


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.+.+..+. .+..+.++++|++++|.+.. +++..+..+++|+.+++++|++++.. +..+..+++|+
T Consensus        99 l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~L~l~~n~l~~-l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~  175 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLD  175 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCC
T ss_pred             ccccccccccccccceeecc-ccccccccccccccccccce-eccccccccccchhcccccccccccC-ccccccccccc
Confidence            99999999999987754443 77788888888888888877 45555777888888888888888655 67788888888


Q ss_pred             EEEecCcccccccCc
Q 024731          234 YLSMGFCTLTGALHG  248 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~  248 (263)
                      +|+|++|+++ .+|.
T Consensus       176 ~L~Ls~N~L~-~lp~  189 (266)
T d1p9ag_         176 TLLLQENSLY-TIPK  189 (266)
T ss_dssp             EEECCSSCCC-CCCT
T ss_pred             eeecccCCCc-ccCh
Confidence            8888888888 6776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.2e-20  Score=151.25  Aligned_cols=162  Identities=22%  Similarity=0.239  Sum_probs=89.8

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCccc---------------------ccccCCCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG---------------------LDTLSRLNNL  133 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------~~~l~~l~~L  133 (263)
                      .++.|++++|.+..     +++..|..+++|++|++++|.+....+...                     ...+.++++|
T Consensus        33 ~~~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          33 ASQRIFLHGNRISH-----VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TCSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCEEECcCCcCCC-----CCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            45678888887753     334456667777777777766543221110                     1234555666


Q ss_pred             CEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcC
Q 024731          134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD  213 (263)
Q Consensus       134 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  213 (263)
                      ++|++++|.+....+..+...++|+.+++++|.+++ +|...+..+++|++|++++|.+++ +++..+..+++|+.++++
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-i~~~~f~~~~~L~~L~l~~N~l~~-l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccc-cChhHhccccchhhcccccCcccc-cchhhhccccccchhhhh
Confidence            666666666654444455555566666666666553 332245555556666666665554 233335555555555555


Q ss_pred             CCCCCcccchhhhhcCCCCCEEEecCccccc
Q 024731          214 DSDLHISQLLQSIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       214 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  244 (263)
                      +|++++.. |..|..+++|++|++++|.+++
T Consensus       186 ~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         186 QNRVAHVH-PHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             SSCCCEEC-TTTTTTCTTCCEEECCSSCCSC
T ss_pred             hccccccC-hhHhhhhhhccccccccccccc
Confidence            55555443 5555555555555555555553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.9e-19  Score=142.29  Aligned_cols=156  Identities=21%  Similarity=0.228  Sum_probs=134.8

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCC
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  152 (263)
                      -.+++.|++++|.+....       .++.+++|++|++++|++++..+.     +..+++|++|++++|.+.+..+..+.
T Consensus        54 l~~L~~L~L~~N~l~~l~-------~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~  121 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTKLQ-------VDGTLPVLGTLDLSHNQLQSLPLL-----GQTLPALTVLDVSFNRLTSLPLGALR  121 (266)
T ss_dssp             CTTCCEEECTTSCCCEEE-------CCSCCTTCCEEECCSSCCSSCCCC-----TTTCTTCCEEECCSSCCCCCCSSTTT
T ss_pred             cccccccccccccccccc-------cccccccccccccccccccccccc-----cccccccccccccccccceeeccccc
Confidence            457899999999986422       356789999999999999876443     78899999999999999977778889


Q ss_pred             CCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC
Q 024731          153 GLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL  232 (263)
Q Consensus       153 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  232 (263)
                      .+.++++|++++|.+.. +|...+..+++++.+++++|++++ ++...+..+++|++|+|++|+++ .+ |+.+..+++|
T Consensus       122 ~l~~l~~L~l~~n~l~~-l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~-~l-p~~~~~~~~L  197 (266)
T d1p9ag_         122 GLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TI-PKGFFGSHLL  197 (266)
T ss_dssp             TCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-CC-CTTTTTTCCC
T ss_pred             cccccccccccccccce-eccccccccccchhcccccccccc-cCccccccccccceeecccCCCc-cc-ChhHCCCCCC
Confidence            99999999999999885 454478889999999999999998 45545899999999999999998 66 8888899999


Q ss_pred             CEEEecCccccc
Q 024731          233 KYLSMGFCTLTG  244 (263)
Q Consensus       233 ~~L~l~~n~l~~  244 (263)
                      +.|+|++|++..
T Consensus       198 ~~L~L~~Np~~C  209 (266)
T d1p9ag_         198 PFAFLHGNPWLC  209 (266)
T ss_dssp             SEEECCSCCBCC
T ss_pred             CEEEecCCCCCC
Confidence            999999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.2e-18  Score=135.10  Aligned_cols=157  Identities=21%  Similarity=0.330  Sum_probs=128.8

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.++++++++...       +.+..+++|++|++++|.+++..+      +.++++|++|++++|.+.. ++ .+.+
T Consensus        40 ~~l~~L~l~~~~i~~l-------~~l~~l~nL~~L~Ls~N~l~~~~~------l~~l~~L~~L~l~~n~~~~-~~-~l~~  104 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI-------DGVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIAD-IT-PLAN  104 (199)
T ss_dssp             TTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-CG-GGTT
T ss_pred             cCCCEEECCCCCCCCc-------cccccCCCcCcCccccccccCccc------ccCCccccccccccccccc-cc-cccc
Confidence            3678999999988532       236789999999999999987543      7899999999999999874 44 4889


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++|++|++++|.... ++  .+..+++|+.|++++|.+.. + +. +..+++|+.|++.+|++++.   ..++++++|+
T Consensus       105 l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~n~l~~-~-~~-l~~~~~L~~L~l~~n~l~~l---~~l~~l~~L~  175 (199)
T d2omxa2         105 LTNLTGLTLFNNQITD-ID--PLKNLTNLNRLELSSNTISD-I-SA-LSGLTSLQQLNFSSNQVTDL---KPLANLTTLE  175 (199)
T ss_dssp             CTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCC-C-GG-GTTCTTCSEEECCSSCCCCC---GGGTTCTTCC
T ss_pred             cccccccccccccccc-cc--ccchhhhhHHhhhhhhhhcc-c-cc-ccccccccccccccccccCC---ccccCCCCCC
Confidence            9999999999998764 32  57889999999999999976 3 33 88999999999999999853   3489999999


Q ss_pred             EEEecCcccccccCc-cchhcHH
Q 024731          234 YLSMGFCTLTGALHG-QGKLRVS  255 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~-~~l~~L~  255 (263)
                      +|++++|++++ +|. ..+.+|+
T Consensus       176 ~L~ls~N~i~~-i~~l~~L~~L~  197 (199)
T d2omxa2         176 RLDISSNKVSD-ISVLAKLTNLE  197 (199)
T ss_dssp             EEECCSSCCCC-CGGGGGCTTCS
T ss_pred             EEECCCCCCCC-CccccCCCCCC
Confidence            99999999985 554 3444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.8e-18  Score=141.46  Aligned_cols=147  Identities=20%  Similarity=0.282  Sum_probs=128.0

Q ss_pred             ccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCcc
Q 024731           95 NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK  174 (263)
Q Consensus        95 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  174 (263)
                      .+..|..+++|++|++++|.+....+..    +...++|+.+++++|++++..+..|..+++|++|++++|++.+..+ .
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~  171 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCGLQELGPGL----FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-R  171 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-T
T ss_pred             cchhhcccccCCEEecCCcccccccccc----cchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-h
Confidence            3556888999999999999987665543    7788999999999999997777889999999999999999985444 4


Q ss_pred             ccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          175 GLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       175 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      .+..+++|+++++++|++++..|.. |..+++|++|++++|++++.. +..++.+++|++|++++|++.+..+.
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhccccccchhhhhhccccccChhH-hhhhhhccccccccccccccc-ccccccccccCEEEecCCCCCCCccc
Confidence            8899999999999999999855554 999999999999999999766 88999999999999999999876543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.6e-18  Score=134.35  Aligned_cols=157  Identities=25%  Similarity=0.364  Sum_probs=127.2

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .++.++++++.+...       ..+..+++|++|++++|.+++..+      +..+++|++|++++|++++ +| .+..+
T Consensus        47 ~L~~L~l~~~~i~~l-------~~l~~l~~L~~L~L~~n~i~~l~~------~~~l~~L~~L~l~~n~i~~-l~-~l~~l  111 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-LS-SLKDL  111 (210)
T ss_dssp             TCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-GG-GGTTC
T ss_pred             CccEEECcCCCCCCc-------hhHhhCCCCCEEeCCCccccCccc------cccCccccccccccccccc-cc-ccccc
Confidence            577899999887532       236789999999999999987543      6789999999999999984 45 58899


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      ++|+.|++++|.+. .++  .+..++.++.+++++|.+++.  .. +..+++|+++++++|++++ +  ..++++++|++
T Consensus       112 ~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~~--~~-~~~l~~L~~l~l~~n~l~~-i--~~l~~l~~L~~  182 (210)
T d1h6ta2         112 KKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISD-I--VPLAGLTKLQN  182 (210)
T ss_dssp             TTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCC-C--GGGTTCTTCCE
T ss_pred             cccccccccccccc-ccc--ccccccccccccccccccccc--cc-ccccccccccccccccccc-c--ccccCCCCCCE
Confidence            99999999999876 343  678899999999999999873  33 7789999999999999985 3  24889999999


Q ss_pred             EEecCcccccccCccchhcHHHHH
Q 024731          235 LSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       235 L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      |++++|+++ .+|.  +.++++|+
T Consensus       183 L~Ls~N~i~-~l~~--l~~l~~L~  203 (210)
T d1h6ta2         183 LYLSKNHIS-DLRA--LAGLKNLD  203 (210)
T ss_dssp             EECCSSCCC-BCGG--GTTCTTCS
T ss_pred             EECCCCCCC-CChh--hcCCCCCC
Confidence            999999998 4664  44444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=2.1e-18  Score=142.25  Aligned_cols=168  Identities=24%  Similarity=0.386  Sum_probs=101.2

Q ss_pred             CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN  132 (263)
Q Consensus        62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~  132 (263)
                      |.|++|.|.+.         ...++.|++++|++..     +.+..|..+++|++|++++|.+....+..    |..+++
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~-----l~~~~f~~l~~L~~L~l~~n~~~~i~~~~----f~~l~~   80 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVK   80 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCC-----cChhHhhccccccccccccccccccchhh----hhCCCc
Confidence            78999999752         2468899999998864     33445677777777777777777655543    566666


Q ss_pred             CCEEEccCCcCCccccc------------------------------------------------cCCCCCCCCEEEcC-
Q 024731          133 LKFLYLDYNHFNNSIFS------------------------------------------------SLGGLSSLRNLSLI-  163 (263)
Q Consensus       133 L~~L~Ls~n~l~~~~p~------------------------------------------------~l~~l~~L~~L~L~-  163 (263)
                      |++|++++|+++. +|.                                                .+..+++|++++++ 
T Consensus        81 L~~L~l~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          81 LERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             CCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             cCEecccCCccCc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence            6666666665441 111                                                11222333344444 


Q ss_pred             --------------------CCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccch
Q 024731          164 --------------------GNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLL  223 (263)
Q Consensus       164 --------------------~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  223 (263)
                                          +|...+..+. .+..++.+++|++++|.+.+. ++..+..+++|++|++++|+++ .+ |
T Consensus       160 n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N~L~-~l-p  235 (305)
T d1xkua_         160 TNITTIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KV-P  235 (305)
T ss_dssp             SCCCSCCSSCCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS-SC-C
T ss_pred             CCccccCcccCCccCEEECCCCcCCCCChh-Hhhcccccccccccccccccc-ccccccccccceeeeccccccc-cc-c
Confidence                                3333333332 455556666666666666553 2333666666777777776665 34 5


Q ss_pred             hhhhcCCCCCEEEecCcccc
Q 024731          224 QSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       224 ~~l~~l~~L~~L~l~~n~l~  243 (263)
                      ..+..+++|++|++++|+++
T Consensus       236 ~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccCCCEEECCCCccC
Confidence            56666677777777777666

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1.6e-18  Score=133.72  Aligned_cols=139  Identities=22%  Similarity=0.241  Sum_probs=100.1

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  182 (263)
                      +++++|+|++|.|++.++..   .|..+++|++|++++|.+....+..+..+++|++|++++|++.. +|+..|.++++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccccccccccceeeeccccccc-cCHHHHhCCCcc
Confidence            57888888888887655442   36778888888888888887777888888888888888888874 444478888888


Q ss_pred             CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      ++|+|++|.+++ +++..|..+++|++|++++|.+........+..  .++.+.+..+.++...|.
T Consensus       105 ~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~--~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_         105 KTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSST
T ss_pred             cccccCCccccc-cCHHHhcCCcccccccccccccccccchHHHhh--hhhhhcccCCCeEeCCCh
Confidence            888888888887 555558888888888888888764321122221  234445556666555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=6.6e-18  Score=130.20  Aligned_cols=133  Identities=20%  Similarity=0.243  Sum_probs=111.0

Q ss_pred             cEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccc-cccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCE
Q 024731          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEE  184 (263)
Q Consensus       106 ~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~  184 (263)
                      +.++.++++++.. |..    +  .+++++|+|++|+|++.+ +..|.++++|++|++++|.+....+. .+..+++|++
T Consensus        11 ~~v~Cs~~~L~~i-P~~----l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~-~~~~~~~L~~   82 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-PRD----I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCSSC-CSC----C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCE
T ss_pred             CEEEEeCCCcCcc-CCC----C--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc-ccccccccce
Confidence            4567777777654 332    3  368999999999998644 55778999999999999999865554 8999999999


Q ss_pred             EEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          185 LDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       185 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      |++++|+++. +++..|.++++|++|+|++|++++.. +..|..+++|+++++++|.+....+.
T Consensus        83 L~Ls~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          83 LQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             EECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             eeeccccccc-cCHHHHhCCCcccccccCCccccccC-HHHhcCCcccccccccccccccccch
Confidence            9999999998 55555999999999999999999655 78899999999999999999865543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=1.4e-18  Score=144.02  Aligned_cols=144  Identities=24%  Similarity=0.346  Sum_probs=127.4

Q ss_pred             cCCcEEEccCcccCCC--CCcccccccCCCCCCCEEEccC-CcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731          103 QQLESLYLIGNNIAGC--VENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~--~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  179 (263)
                      .+++.|+|+++.+.+.  +|.    .+.++++|++|+|++ |+++|.+|..++++++|++|++++|++.+..+. .+..+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~----~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~  124 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGC
T ss_pred             EEEEEEECCCCCCCCCCCCCh----HHhcCccccccccccccccccccccccccccccchhhhccccccccccc-cccch
Confidence            4688999999999874  444    389999999999996 899999999999999999999999999987776 88999


Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCC-CEEEecCcccccccCccchhcH
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSL-KYLSMGFCTLTGALHGQGKLRV  254 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L-~~L~l~~n~l~~~~p~~~l~~L  254 (263)
                      ..|+++++++|.+.+.+|.. +.++++++++++++|.+.+.+ |..+..+.++ +.+++++|+++|..|. .+.++
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~~i-p~~~~~l~~l~~~l~~~~n~l~~~~~~-~~~~l  197 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPP-TFANL  197 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEEECCG-GGGGC
T ss_pred             hhhcccccccccccccCchh-hccCcccceeecccccccccc-ccccccccccccccccccccccccccc-ccccc
Confidence            99999999999999988776 999999999999999999888 8888888876 8899999999998887 44433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1e-16  Score=114.57  Aligned_cols=120  Identities=22%  Similarity=0.241  Sum_probs=68.4

Q ss_pred             cEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEE
Q 024731          106 ESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEEL  185 (263)
Q Consensus       106 ~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L  185 (263)
                      |.|++++|+++.. +.     +..+++|++|++++|+++ .+|..++.+++|++|++++|.+++ +|  .+..+++|++|
T Consensus         1 R~L~Ls~n~l~~l-~~-----l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVL-CH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSC-CC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCC-cc-----cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC--ccccccccCeE
Confidence            4566666666533 22     555666666666666666 455556666666666666666653 33  45666666666


Q ss_pred             EcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCccc--chhhhhcCCCCCEE
Q 024731          186 DMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQ--LLQSIASFTSLKYL  235 (263)
Q Consensus       186 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~l~~L~~L  235 (263)
                      ++++|.++.......+..+++|++|++++|+++...  .......+|+|+.+
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            666666665321122566666666666666664221  02233445555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.6e-16  Score=125.43  Aligned_cols=159  Identities=22%  Similarity=0.277  Sum_probs=101.2

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      .++.+++.++++...       +.+..+++|++|++++|.+++..+      +..+++++++++++|.++. ++ .+.++
T Consensus        42 ~L~~L~l~~~~i~~l-------~~l~~l~~L~~L~ls~n~i~~~~~------l~~l~~l~~l~~~~n~~~~-i~-~l~~l  106 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI-------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-VS-AIAGL  106 (227)
T ss_dssp             TCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-CG-GGTTC
T ss_pred             CcCEEECCCCCCCcc-------hhHhcCCCCcEeecCCceeecccc------ccccccccccccccccccc-cc-ccccc
Confidence            355566666655321       124556666666666666654332      4555666666666665552 22 34555


Q ss_pred             CCCCEEEcCCCcCCCCc-------------------CccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCC
Q 024731          155 SSLRNLSLIGNRLIGSI-------------------DIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDS  215 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~-------------------p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  215 (263)
                      ++|++++++++...+..                   ....+..+++|++|++++|.+.+.  .. ++++++|++|++++|
T Consensus       107 ~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDN  183 (227)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hh-hcccccceecccCCC
Confidence            55555555555433210                   011456778899999999998763  33 889999999999999


Q ss_pred             CCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHH
Q 024731          216 DLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEA  257 (263)
Q Consensus       216 ~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L  257 (263)
                      ++++ +  ..++++++|++|++++|++++ +|.  +.++++|
T Consensus       184 ~l~~-l--~~l~~l~~L~~L~Ls~N~lt~-i~~--l~~l~~L  219 (227)
T d1h6ua2         184 KISD-I--SPLASLPNLIEVHLKNNQISD-VSP--LANTSNL  219 (227)
T ss_dssp             CCCC-C--GGGGGCTTCCEEECTTSCCCB-CGG--GTTCTTC
T ss_pred             ccCC-C--hhhcCCCCCCEEECcCCcCCC-Ccc--cccCCCC
Confidence            9985 3  348899999999999999985 544  3444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=134.24  Aligned_cols=158  Identities=26%  Similarity=0.351  Sum_probs=119.4

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.++++++.+...       ..+..+++|+.|++++|.+++..+      +..+++|++|++++|.+++..  .+..
T Consensus       219 ~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~~~l~~~~--~~~~  283 (384)
T d2omza2         219 TNLDELSLNGNQLKDI-------GTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNIS--PLAG  283 (384)
T ss_dssp             TTCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             CCCCEEECCCCCCCCc-------chhhcccccchhccccCccCCCCc------ccccccCCEeeccCcccCCCC--cccc
Confidence            4566777777766432       235677888888888888876543      677888888888888887432  3667


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      ++.++.++++.|.+.+ ++  .+..++++++|++++|++++. + . +..+++|++|++++|++++ +  ..++.+++|+
T Consensus       284 ~~~l~~l~~~~n~l~~-~~--~~~~~~~l~~L~ls~n~l~~l-~-~-l~~l~~L~~L~L~~n~l~~-l--~~l~~l~~L~  354 (384)
T d2omza2         284 LTALTNLELNENQLED-IS--PISNLKNLTYLTLYFNNISDI-S-P-VSSLTKLQRLFFANNKVSD-V--SSLANLTNIN  354 (384)
T ss_dssp             CTTCSEEECCSSCCSC-CG--GGGGCTTCSEEECCSSCCSCC-G-G-GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCC
T ss_pred             cccccccccccccccc-cc--ccchhcccCeEECCCCCCCCC-c-c-cccCCCCCEEECCCCCCCC-C--hhHcCCCCCC
Confidence            7888888888888764 22  577889999999999999884 3 2 7889999999999999984 3  3689999999


Q ss_pred             EEEecCcccccccCccchhcHH
Q 024731          234 YLSMGFCTLTGALHGQGKLRVS  255 (263)
Q Consensus       234 ~L~l~~n~l~~~~p~~~l~~L~  255 (263)
                      +|++++|++++..|-..+.+|+
T Consensus       355 ~L~l~~N~l~~l~~l~~l~~L~  376 (384)
T d2omza2         355 WLSAGHNQISDLTPLANLTRIT  376 (384)
T ss_dssp             EEECCSSCCCBCGGGTTCTTCS
T ss_pred             EEECCCCcCCCChhhccCCCCC
Confidence            9999999999755433344433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=119.16  Aligned_cols=131  Identities=21%  Similarity=0.196  Sum_probs=104.0

Q ss_pred             cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (263)
                      .+.+..++++|++++|+|+.. +..    +..+++|++|++++|.++ .+ +.+..+++|++|++++|.++. ++...+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~----~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~-l~~~~~~   84 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENL----GATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICR-IGEGLDQ   84 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCG----GGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCE-ECSCHHH
T ss_pred             hccCcCcCcEEECCCCCCCcc-Ccc----ccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccC-CCccccc
Confidence            356777899999999999875 332    567899999999999998 44 358899999999999999874 5543567


Q ss_pred             CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccc--hhhhhcCCCCCEEE
Q 024731          178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQL--LQSIASFTSLKYLS  236 (263)
Q Consensus       178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~l~~L~~L~  236 (263)
                      .+++|++|++++|.++....-..+..+++|++|++++|+++....  +..+..+++|++||
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            799999999999999873221347889999999999999864320  23578899999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.1e-16  Score=111.97  Aligned_cols=104  Identities=31%  Similarity=0.367  Sum_probs=91.2

Q ss_pred             CEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcC
Q 024731          134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILD  213 (263)
Q Consensus       134 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  213 (263)
                      |+|++++|+++ .++ .+..+++|++|++++|.+. .+|. .+..+++|++|++++|.++. ++ . +..+++|++|+++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~-l~-~-~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-G-VANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-G-GTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchh-hhhhhhcccccccccccccc-cC-c-cccccccCeEECC
Confidence            68999999998 455 4889999999999999997 5786 78999999999999999998 44 4 8999999999999


Q ss_pred             CCCCCcccchhhhhcCCCCCEEEecCccccc
Q 024731          214 DSDLHISQLLQSIASFTSLKYLSMGFCTLTG  244 (263)
Q Consensus       214 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  244 (263)
                      +|+++.......++.+++|++|++++|++++
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9999854324678999999999999999984

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.8e-16  Score=119.48  Aligned_cols=142  Identities=27%  Similarity=0.360  Sum_probs=119.0

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      .+++.+++++|.+....       .++.+++|++|++++|++++. +.     +..+++|+.|++++|.+.. + ..+..
T Consensus        68 ~~L~~L~L~~n~i~~l~-------~~~~l~~L~~L~l~~n~i~~l-~~-----l~~l~~L~~L~l~~~~~~~-~-~~l~~  132 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDIK-------PLANLKNLGWLFLDENKVKDL-SS-----LKDLKKLKSLSLEHNGISD-I-NGLVH  132 (210)
T ss_dssp             TTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSSCCCCG-GG-----GTTCTTCCEEECTTSCCCC-C-GGGGG
T ss_pred             CCCCEEeCCCccccCcc-------ccccCcccccccccccccccc-cc-----ccccccccccccccccccc-c-ccccc
Confidence            46889999999885422       257899999999999999864 32     7889999999999999874 3 45788


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      +++++.+++++|.+++ .+  .+..+++|+++++++|++++ ++ . +.++++|+.|++++|+++. + + .+..+++|+
T Consensus       133 l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~-i~-~-l~~l~~L~~L~Ls~N~i~~-l-~-~l~~l~~L~  203 (210)
T d1h6ta2         133 LPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISD-IV-P-LAGLTKLQNLYLSKNHISD-L-R-ALAGLKNLD  203 (210)
T ss_dssp             CTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCB-C-G-GGTTCTTCS
T ss_pred             cccccccccccccccc-cc--cccccccccccccccccccc-cc-c-ccCCCCCCEEECCCCCCCC-C-h-hhcCCCCCC
Confidence            9999999999999874 22  56789999999999999987 43 3 8899999999999999984 4 3 689999999


Q ss_pred             EEEecC
Q 024731          234 YLSMGF  239 (263)
Q Consensus       234 ~L~l~~  239 (263)
                      +|++++
T Consensus       204 ~L~Ls~  209 (210)
T d1h6ta2         204 VLELFS  209 (210)
T ss_dssp             EEEEEE
T ss_pred             EEEccC
Confidence            999974

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=7.4e-16  Score=126.75  Aligned_cols=143  Identities=18%  Similarity=0.141  Sum_probs=109.6

Q ss_pred             cCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (263)
Q Consensus       100 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  179 (263)
                      ..+++|+.+++++|.+... +.      ..+++|++|++++|..++..+..+.+++.+++|++++|.+.+..+. .+..+
T Consensus       147 ~~l~~L~~l~l~~n~l~~l-~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~-~~~~l  218 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITTI-PQ------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANT  218 (305)
T ss_dssp             GGCTTCCEEECCSSCCCSC-CS------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGS
T ss_pred             ccccccCccccccCCcccc-Cc------ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc-ccccc
Confidence            3445555555555555432 11      2356788888888888888888899999999999999999865454 88899


Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchh------hhhcCCCCCEEEecCcccc-cccCccchh
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ------SIASFTSLKYLSMGFCTLT-GALHGQGKL  252 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------~l~~l~~L~~L~l~~n~l~-~~~p~~~l~  252 (263)
                      ++|++|+|++|+++. +|.. +..+++|++|++++|+++... ..      .....++|+.|++++|+++ ..+++..|.
T Consensus       219 ~~L~~L~L~~N~L~~-lp~~-l~~l~~L~~L~Ls~N~i~~i~-~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~  295 (305)
T d1xkua_         219 PHLRELHLNNNKLVK-VPGG-LADHKYIQVVYLHNNNISAIG-SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  295 (305)
T ss_dssp             TTCCEEECCSSCCSS-CCTT-TTTCSSCCEEECCSSCCCCCC-TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             ccceeeecccccccc-cccc-cccccCCCEEECCCCccCccC-hhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhc
Confidence            999999999999987 6765 999999999999999998432 22      2346788999999999985 456664554


Q ss_pred             c
Q 024731          253 R  253 (263)
Q Consensus       253 ~  253 (263)
                      -
T Consensus       296 ~  296 (305)
T d1xkua_         296 C  296 (305)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.3e-16  Score=119.54  Aligned_cols=139  Identities=24%  Similarity=0.313  Sum_probs=113.2

Q ss_pred             cCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCC
Q 024731          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSL  179 (263)
Q Consensus       100 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l  179 (263)
                      ..+.++++|++++|.++.. +.     +..+++|++|++++|++++..|  ++++++|++|++++|.+. .++  .+..+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l-~~-----l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~--~l~~l  105 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI-DG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT--PLANL  105 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC-TT-----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTC
T ss_pred             HHhcCCCEEECCCCCCCCc-cc-----cccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc--ccccc
Confidence            4578999999999999754 22     6789999999999999986433  899999999999999976 344  57899


Q ss_pred             CCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHH
Q 024731          180 GNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVS  255 (263)
Q Consensus       180 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~  255 (263)
                      ++|++|++++|.+...  .. +..+++|+.|++++|++..   .+.+..+++|++|++++|++++..|-..+++|+
T Consensus       106 ~~L~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~  175 (199)
T d2omxa2         106 TNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLE  175 (199)
T ss_dssp             TTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             cccccccccccccccc--cc-cchhhhhHHhhhhhhhhcc---cccccccccccccccccccccCCccccCCCCCC
Confidence            9999999999998873  33 7889999999999999873   346889999999999999998643223344433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.1e-16  Score=115.64  Aligned_cols=116  Identities=22%  Similarity=0.206  Sum_probs=98.1

Q ss_pred             cCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN  206 (263)
Q Consensus       127 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  206 (263)
                      +.+..++++|+|++|+++ .++..+..+++|++|++++|.++ .++  .+..+++|++|++++|.++. +++..+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICR-IGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccC-CCccccccccc
Confidence            667889999999999998 55776778999999999999987 454  68899999999999999988 55544678999


Q ss_pred             CcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          207 LEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       207 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      |++|++++|+++.......+..+++|++|++++|+++ ..|.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~  129 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKH  129 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc-cccc
Confidence            9999999999985431356889999999999999997 4453

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.3e-16  Score=124.56  Aligned_cols=185  Identities=18%  Similarity=0.216  Sum_probs=128.2

Q ss_pred             CCCCceEEcCC---------CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCC
Q 024731           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN  132 (263)
Q Consensus        62 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~  132 (263)
                      |....|.|...         ...++.+++++|.+..     +....|.++++|++|++++|.+...++..   .|..+++
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~-----l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~~   79 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK   79 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCE-----ECTTTTTTCTTCCEEEEESCTTCCEECSS---SEESCTT
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCc-----cChhHhhccchhhhhhhccccccceeecc---ccccccc
Confidence            66778888641         1358899999998853     44556889999999999999987765542   3677888


Q ss_pred             CCEEEccC-CcCCccccccCCCCCCCCEEEcCCCcCCCCcCc------------------------cccCCC-CCCCEEE
Q 024731          133 LKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI------------------------KGLDSL-GNLEELD  186 (263)
Q Consensus       133 L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------------------~~~~~l-~~L~~L~  186 (263)
                      ++++++.. |.+....+..|.++++|+++++++|.+....+.                        ..+..+ ..++.|+
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~  159 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  159 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeee
Confidence            88888754 566666667778888888888888876532111                        122222 2566677


Q ss_pred             cCCCCCCCCCchhhhcCCCCCcEE-EcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCccchhcHHHHH
Q 024731          187 MSDNAINNLVIPKELHNFTNLEEL-ILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHGQGKLRVSEAF  258 (263)
Q Consensus       187 L~~n~l~~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~l~~L~~L~  258 (263)
                      +++|.++. ++.. ....++++.+ ++++|+++... +..|.++++|++|++++|+++ .+|...+.++++|.
T Consensus       160 l~~n~l~~-i~~~-~~~~~~l~~~~~l~~n~l~~l~-~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         160 LNKNGIQE-IHNC-AFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR  228 (242)
T ss_dssp             CCSSCCCE-ECTT-TTTTCCEEEEECTTCTTCCCCC-TTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred             cccccccc-cccc-cccchhhhcccccccccccccc-HHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccc
Confidence            77777765 4443 3344555555 46777787433 566889999999999999998 67775677665554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=8.4e-15  Score=123.58  Aligned_cols=144  Identities=24%  Similarity=0.300  Sum_probs=121.8

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  153 (263)
                      ..++.++++++.+...+       .+..+++|++|+++++.+.+..+      +..++.++.++++.|.+++  +..+..
T Consensus       241 ~~L~~L~l~~n~l~~~~-------~~~~~~~L~~L~l~~~~l~~~~~------~~~~~~l~~l~~~~n~l~~--~~~~~~  305 (384)
T d2omza2         241 TNLTDLDLANNQISNLA-------PLSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLED--ISPISN  305 (384)
T ss_dssp             TTCSEEECCSSCCCCCG-------GGTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSC--CGGGGG
T ss_pred             cccchhccccCccCCCC-------cccccccCCEeeccCcccCCCCc------ccccccccccccccccccc--ccccch
Confidence            46788999999875422       36788999999999999987544      6789999999999999985  345788


Q ss_pred             CCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCC
Q 024731          154 LSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLK  233 (263)
Q Consensus       154 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  233 (263)
                      ++++++|++++|++++. +  .+..+++|++|++++|.+++ ++ . +.++++|++|++++|++++.. |  +.++++|+
T Consensus       306 ~~~l~~L~ls~n~l~~l-~--~l~~l~~L~~L~L~~n~l~~-l~-~-l~~l~~L~~L~l~~N~l~~l~-~--l~~l~~L~  376 (384)
T d2omza2         306 LKNLTYLTLYFNNISDI-S--PVSSLTKLQRLFFANNKVSD-VS-S-LANLTNINWLSAGHNQISDLT-P--LANLTRIT  376 (384)
T ss_dssp             CTTCSEEECCSSCCSCC-G--GGGGCTTCCEEECCSSCCCC-CG-G-GGGCTTCCEEECCSSCCCBCG-G--GTTCTTCS
T ss_pred             hcccCeEECCCCCCCCC-c--ccccCCCCCEEECCCCCCCC-Ch-h-HcCCCCCCEEECCCCcCCCCh-h--hccCCCCC
Confidence            99999999999999863 3  47789999999999999987 43 4 899999999999999998644 3  89999999


Q ss_pred             EEEecCcc
Q 024731          234 YLSMGFCT  241 (263)
Q Consensus       234 ~L~l~~n~  241 (263)
                      +|++++|.
T Consensus       377 ~L~L~~Na  384 (384)
T d2omza2         377 QLGLNDQA  384 (384)
T ss_dssp             EEECCCEE
T ss_pred             EeeCCCCc
Confidence            99999984

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=5.4e-14  Score=110.59  Aligned_cols=145  Identities=23%  Similarity=0.342  Sum_probs=107.9

Q ss_pred             CCcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccc-----
Q 024731           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-----  147 (263)
Q Consensus        73 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----  147 (263)
                      -.+++.+++++|.+...       ..+..+++++++++++|.++.. +.     +..+++|++++++++...+..     
T Consensus        62 l~~L~~L~ls~n~i~~~-------~~l~~l~~l~~l~~~~n~~~~i-~~-----l~~l~~L~~l~l~~~~~~~~~~~~~~  128 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDL-------APLKNLTKITELELSGNPLKNV-SA-----IAGLQSIKTLDLTSTQITDVTPLAGL  128 (227)
T ss_dssp             CTTCCEEECCSSCCCCC-------GGGTTCCSCCEEECCSCCCSCC-GG-----GTTCTTCCEEECTTSCCCCCGGGTTC
T ss_pred             CCCCcEeecCCceeecc-------cccccccccccccccccccccc-cc-----ccccccccccccccccccccchhccc
Confidence            34788899999887532       1267777888888887776543 21     566667777777666554221     


Q ss_pred             ---------------cccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEc
Q 024731          148 ---------------FSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELIL  212 (263)
Q Consensus       148 ---------------p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  212 (263)
                                     ...+.++++|++|++++|.+.+. +  .+.++++|++|++++|++++ ++ . +..+++|++|++
T Consensus       129 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~--~l~~l~~L~~L~Ls~n~l~~-l~-~-l~~l~~L~~L~L  202 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-T--PLANLSKLTTLKADDNKISD-IS-P-LASLPNLIEVHL  202 (227)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC-CG-G-GGGCTTCCEEEC
T ss_pred             cchhhhhchhhhhchhhhhccccccccccccccccccc-h--hhcccccceecccCCCccCC-Ch-h-hcCCCCCCEEEC
Confidence                           12345678899999999987642 2  57899999999999999987 43 3 889999999999


Q ss_pred             CCCCCCcccchhhhhcCCCCCEEEecC
Q 024731          213 DDSDLHISQLLQSIASFTSLKYLSMGF  239 (263)
Q Consensus       213 ~~n~l~~~~~~~~l~~l~~L~~L~l~~  239 (263)
                      ++|++++ + + .++++++|++|++++
T Consensus       203 s~N~lt~-i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         203 KNNQISD-V-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTSCCCB-C-G-GGTTCTTCCEEEEEE
T ss_pred             cCCcCCC-C-c-ccccCCCCCEEEeeC
Confidence            9999985 3 3 489999999999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.47  E-value=1.6e-16  Score=122.88  Aligned_cols=133  Identities=26%  Similarity=0.305  Sum_probs=101.5

Q ss_pred             cccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccC
Q 024731           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLD  177 (263)
Q Consensus        98 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  177 (263)
                      .+..+++|++|++++|.++.. +.     +..+++|++|++++|.++ .+|.....+++|++|++++|.++. ++  .+.
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i-~~-----l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~--~~~  112 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI-SS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE  112 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC-CC-----HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH--HHH
T ss_pred             HHhcccccceeECcccCCCCc-cc-----ccCCccccChhhcccccc-cccccccccccccccccccccccc-cc--ccc
Confidence            467889999999999999854 32     678889999999999998 556555556789999999999874 43  577


Q ss_pred             CCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchh----------hhhcCCCCCEEEecCcccc
Q 024731          178 SLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQ----------SIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       178 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----------~l~~l~~L~~L~l~~n~l~  243 (263)
                      .+++|++|++++|.++.......+..+++|+.|++++|++.... +.          .+..+++|+.||  +..++
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY-KENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH-CTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCc-ccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            88899999999999987322134788999999999999875432 11          267789999876  44444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.7e-13  Score=97.81  Aligned_cols=109  Identities=25%  Similarity=0.337  Sum_probs=86.6

Q ss_pred             CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC-cCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCC
Q 024731          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN-HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLG  180 (263)
Q Consensus       102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~  180 (263)
                      ....+.++.+++.+...+..     +..+++|++|++++| .++...+..|.++++|+.|++++|+++. ++...|..++
T Consensus         7 c~~~~~l~c~~~~~~~~p~~-----l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~   80 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTP   80 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCS
T ss_pred             cCCCCeEEecCCCCccCccc-----ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC-cccccccccc
Confidence            34556788888888765443     778899999999766 4876656789999999999999999875 5444899999


Q ss_pred             CCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCC
Q 024731          181 NLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLH  218 (263)
Q Consensus       181 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  218 (263)
                      +|++|+|++|+++. ++...+. ..+|++|++++|++.
T Consensus        81 ~L~~L~Ls~N~l~~-l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALES-LSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCSC-CCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cccceeccCCCCcc-cChhhhc-cccccccccCCCccc
Confidence            99999999999987 6666454 447999999999985

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.8e-13  Score=98.13  Aligned_cols=104  Identities=20%  Similarity=0.157  Sum_probs=79.9

Q ss_pred             EEecCCCCCccccccccccccccCCcCCcEEEccCcc-cCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCC
Q 024731           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (263)
Q Consensus        78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  156 (263)
                      .++.+++++...      +..+..+++|++|++++|+ ++...+.    .|.++++|+.|++++|+++...+..|..+++
T Consensus        12 ~l~c~~~~~~~~------p~~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3          12 GLRCTRDGALDS------LHHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CEECCSSCCCTT------TTTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             eEEecCCCCccC------cccccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCccccccccccc
Confidence            367777666422      3346778899999997664 6654443    3888999999999999999777788999999


Q ss_pred             CCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCC
Q 024731          157 LRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAIN  193 (263)
Q Consensus       157 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  193 (263)
                      |++|+|++|+++ .+|...+ ...+|++|+|++|.+.
T Consensus        82 L~~L~Ls~N~l~-~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALE-SLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCS-CCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             ccceeccCCCCc-ccChhhh-ccccccccccCCCccc
Confidence            999999999987 5666344 4457999999999885

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.8e-14  Score=117.34  Aligned_cols=157  Identities=24%  Similarity=0.250  Sum_probs=81.7

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCC-cCCcc-ccccC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN-HFNNS-IFSSL  151 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l  151 (263)
                      .+++.+|++++.+...+.    ...+..+++|++|+++++.+++....    .+..+++|++|+++++ .+++. +....
T Consensus        46 ~~L~~LdLs~~~i~~~~l----~~l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTL----HGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             BCCCEEECTTCEECHHHH----HHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             CCCCEEECCCCccCHHHH----HHHHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCccccccccccccccchhh
Confidence            356778887776532111    22356677788888877776543332    2566777777777774 45432 12223


Q ss_pred             CCCCCCCEEEcCCCc-CCCC-cCc---------------------------cccCCCCCCCEEEcCCCC-CCCCCchhhh
Q 024731          152 GGLSSLRNLSLIGNR-LIGS-IDI---------------------------KGLDSLGNLEELDMSDNA-INNLVIPKEL  201 (263)
Q Consensus       152 ~~l~~L~~L~L~~n~-l~~~-~p~---------------------------~~~~~l~~L~~L~L~~n~-l~~~~~~~~l  201 (263)
                      ..+++|++|+++++. ++.. +..                           .....+++|++|++++|. +++..... +
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-l  196 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-F  196 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-G
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-h
Confidence            456677777777653 2111 000                           011234555555555542 33322222 4


Q ss_pred             cCCCCCcEEEcCCC-CCCcccchhhhhcCCCCCEEEecCc
Q 024731          202 HNFTNLEELILDDS-DLHISQLLQSIASFTSLKYLSMGFC  240 (263)
Q Consensus       202 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~l~~L~~L~l~~n  240 (263)
                      .++++|++|++++| .+++.. ...++++++|++|+++++
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~-l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCChHH-HHHHhcCCCCCEEeeeCC
Confidence            55555555555553 344433 344555555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=3.2e-15  Score=115.40  Aligned_cols=116  Identities=28%  Similarity=0.297  Sum_probs=96.4

Q ss_pred             ccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCC
Q 024731          126 TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFT  205 (263)
Q Consensus       126 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  205 (263)
                      .+..+++|++|+|++|+++. ++ .+..+++|++|++++|.+. .+|. ....+++|++|++++|.++. + +. +..++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~-~~~~~~~L~~L~l~~N~i~~-l-~~-~~~l~  115 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIAS-L-SG-IEKLV  115 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSS-HHHHHHHCCEEECSEEECCC-H-HH-HHHHH
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccc-cccccccccccccccccccc-c-cc-ccccc
Confidence            37789999999999999984 44 5888999999999999987 4664 44556789999999999987 3 33 78899


Q ss_pred             CCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccccccCc
Q 024731          206 NLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLTGALHG  248 (263)
Q Consensus       206 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~  248 (263)
                      +|++|++++|+++.......+..+++|+.|++++|+++...+.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            9999999999998543125789999999999999999866554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2e-11  Score=96.35  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=79.1

Q ss_pred             EEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcccc-ccCCCCCC
Q 024731           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLGGLSS  156 (263)
Q Consensus        78 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~  156 (263)
                      .++.++.++..     ++...   .+++++|++++|.++...+.    .|.++++|++|++++|.+...++ ..|.+++.
T Consensus        12 ~i~c~~~~l~~-----iP~~l---~~~l~~L~Ls~n~i~~l~~~----~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1          12 VFLCQESKVTE-----IPSDL---PRNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             EEEEESCSCSS-----CCSCS---CSCCSEEEEESCCCCEECTT----TTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             EEEEeCCCCCC-----cCCCC---CCCCCEEECcCCcCCccChh----Hhhccchhhhhhhccccccceeeccccccccc
Confidence            45666665543     22222   25799999999999865554    38899999999999999986554 46788999


Q ss_pred             CCEEEcCC-CcCCCCcCccccCCCCCCCEEEcCCCCCCCC
Q 024731          157 LRNLSLIG-NRLIGSIDIKGLDSLGNLEELDMSDNAINNL  195 (263)
Q Consensus       157 L~~L~L~~-n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  195 (263)
                      ++++.+.. |.+.. .+...+..+++|+++++++|.+...
T Consensus        80 l~~l~~~~~n~l~~-~~~~~~~~l~~L~~l~l~~~~l~~~  118 (242)
T d1xwdc1          80 LHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHL  118 (242)
T ss_dssp             CCEEEEECCTTCCE-ECTTSEECCTTCCEEEEESCCCCSC
T ss_pred             cccccccccccccc-cccccccccccccccccchhhhccc
Confidence            99999865 55554 4444789999999999999988653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4e-13  Score=109.20  Aligned_cols=139  Identities=23%  Similarity=0.233  Sum_probs=96.8

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCc-CCCC-cCccccCC
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR-LIGS-IDIKGLDS  178 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~~  178 (263)
                      ...+|++|+++++.++.....   ..+..+++|++|++++|.+++..+..++.+++|++|+++++. ++.. +.. ....
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~---~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~-l~~~  119 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSS  119 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHH
T ss_pred             cCCCCCEEECCCCccCHHHHH---HHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch-hhHH
Confidence            456899999999988643222   237889999999999999998888889999999999999964 4321 111 2346


Q ss_pred             CCCCCEEEcCCCC-CCCCCc----------------------------hhhhcCCCCCcEEEcCCCC-CCcccchhhhhc
Q 024731          179 LGNLEELDMSDNA-INNLVI----------------------------PKELHNFTNLEELILDDSD-LHISQLLQSIAS  228 (263)
Q Consensus       179 l~~L~~L~L~~n~-l~~~~~----------------------------~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~  228 (263)
                      +++|++|+++++. ++....                            ......+++|++|++++|. +++.. ...+.+
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~~~l~~  198 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQ  198 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGG
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh-hhhhcc
Confidence            7889999998863 321100                            0012345677777777754 55555 566777


Q ss_pred             CCCCCEEEecCc-cccc
Q 024731          229 FTSLKYLSMGFC-TLTG  244 (263)
Q Consensus       229 l~~L~~L~l~~n-~l~~  244 (263)
                      +++|++|++++| .+++
T Consensus       199 ~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             CTTCCEEECTTCTTCCG
T ss_pred             cCcCCEEECCCCCCCCh
Confidence            778888888774 4543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=1.9e-12  Score=107.88  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=100.5

Q ss_pred             CcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcc-----ccccCCCCCCCCEEEcCCCcCCCC----cC
Q 024731          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-----IFSSLGGLSSLRNLSLIGNRLIGS----ID  172 (263)
Q Consensus       102 l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~p  172 (263)
                      .+.|+.+++++|.++..........+...+.|++|++++|.++..     +...+...++|++|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            445566666666554322222223345678899999999998742     334567788999999999987532    22


Q ss_pred             ccccCCCCCCCEEEcCCCCCCCCCchh---hhc--CCCCCcEEEcCCCCCCccc---chhhhh-cCCCCCEEEecCcccc
Q 024731          173 IKGLDSLGNLEELDMSDNAINNLVIPK---ELH--NFTNLEELILDDSDLHISQ---LLQSIA-SFTSLKYLSMGFCTLT  243 (263)
Q Consensus       173 ~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~--~l~~L~~L~l~~n~l~~~~---~~~~l~-~l~~L~~L~l~~n~l~  243 (263)
                      . .+..+++|++|++++|.+++.....   .+.  ..+.|++|++++|.++...   +...+. +.++|++|++++|.+.
T Consensus       237 ~-~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 I-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             H-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             c-cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            2 5678899999999999987642221   122  2467999999999987543   123342 5788999999999986


Q ss_pred             cccCccchhcHHHH
Q 024731          244 GALHGQGKLRVSEA  257 (263)
Q Consensus       244 ~~~p~~~l~~L~~L  257 (263)
                      .. .. .+..++++
T Consensus       316 ~~-~~-~~~~l~~~  327 (344)
T d2ca6a1         316 EE-DD-VVDEIREV  327 (344)
T ss_dssp             TT-SH-HHHHHHHH
T ss_pred             Cc-ch-HHHHHHHH
Confidence            32 22 34444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=1e-11  Score=103.36  Aligned_cols=170  Identities=19%  Similarity=0.240  Sum_probs=111.3

Q ss_pred             CcEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCccccc---------ccCCCCCCCEEEccCCcCC
Q 024731           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLD---------TLSRLNNLKFLYLDYNHFN  144 (263)
Q Consensus        74 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l~~l~~L~~L~Ls~n~l~  144 (263)
                      .+++.+++++|.+...+...+ ...+...++|++|++++|.+..........         .....+.|+.+++++|.++
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPL-IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccccccccccccccccch-hhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            467788888887754332222 223456778888888888764221111100         1235678888888888886


Q ss_pred             cc----ccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCc---hhhhcCCCCCcEEEcC
Q 024731          145 NS----IFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVI---PKELHNFTNLEELILD  213 (263)
Q Consensus       145 ~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~l~  213 (263)
                      ..    +...+...+.|++|++++|.+...    +....+..+++|+.|++++|.++....   ...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            43    233455678899999999987632    111246678899999999998754311   1236788999999999


Q ss_pred             CCCCCcccc---hhhhhc--CCCCCEEEecCccccc
Q 024731          214 DSDLHISQL---LQSIAS--FTSLKYLSMGFCTLTG  244 (263)
Q Consensus       214 ~n~l~~~~~---~~~l~~--l~~L~~L~l~~n~l~~  244 (263)
                      +|.+++...   .+.+..  .+.|++|++++|+++.
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            999986531   223333  4679999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.03  E-value=3.4e-09  Score=87.23  Aligned_cols=137  Identities=20%  Similarity=0.209  Sum_probs=93.1

Q ss_pred             cEEEEecCCCCCccccccccccccccCCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCC
Q 024731           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (263)
Q Consensus        75 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  154 (263)
                      +++++|+++++++..++         ..++|++|++++|+++.. |.       .+.+|+.|++++|.++ .++..   .
T Consensus        39 ~l~~LdLs~~~L~~lp~---------~~~~L~~L~Ls~N~l~~l-p~-------~~~~L~~L~l~~n~l~-~l~~l---p   97 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE---------LPPHLESLVASCNSLTEL-PE-------LPQSLKSLLVDNNNLK-ALSDL---P   97 (353)
T ss_dssp             TCSEEECTTSCCSCCCS---------CCTTCSEEECCSSCCSSC-CC-------CCTTCCEEECCSSCCS-CCCSC---C
T ss_pred             CCCEEEeCCCCCCCCCC---------CCCCCCEEECCCCCCccc-cc-------chhhhhhhhhhhcccc-hhhhh---c
Confidence            46688999988753221         246889999999998743 43       2458899999999887 33321   2


Q ss_pred             CCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCE
Q 024731          155 SSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKY  234 (263)
Q Consensus       155 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  234 (263)
                      +.|++|++++|.+. .+|  .+..+++|++|++++|.+... +.    ....+..+.+..+....   ...+..++.++.
T Consensus        98 ~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~~~~~~~-~~----~~~~l~~l~~~~~~~~~---~~~l~~l~~l~~  166 (353)
T d1jl5a_          98 PLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKKL-PD----LPPSLEFIAAGNNQLEE---LPELQNLPFLTA  166 (353)
T ss_dssp             TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSS---CCCCTTCTTCCE
T ss_pred             cccccccccccccc-ccc--chhhhccceeecccccccccc-cc----ccccccchhhccccccc---ccccccccccee
Confidence            46899999999987 566  357788999999999888663 22    23455566665555432   234556666677


Q ss_pred             EEecCcccc
Q 024731          235 LSMGFCTLT  243 (263)
Q Consensus       235 L~l~~n~l~  243 (263)
                      +++++|.+.
T Consensus       167 L~l~~n~~~  175 (353)
T d1jl5a_         167 IYADNNSLK  175 (353)
T ss_dssp             EECCSSCCS
T ss_pred             ccccccccc
Confidence            777666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.6e-11  Score=102.07  Aligned_cols=144  Identities=21%  Similarity=0.149  Sum_probs=76.2

Q ss_pred             cCCcCCcEEEccCcccCCCCCccccccc-CCCCCCCEEEccCCcCCccccc----cCCCCCCCCEEEcCCCcCCCC----
Q 024731          100 TPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFS----SLGGLSSLRNLSLIGNRLIGS----  170 (263)
Q Consensus       100 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~----  170 (263)
                      ...+.++.+++++|.++..........+ .....|+.+++++|.++.....    .+...++|++|+|++|.+++.    
T Consensus       280 ~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~  359 (460)
T d1z7xw1         280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE  359 (460)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             cccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccch
Confidence            3455566666666655422111111111 2334677777777766643222    223445677777777776432    


Q ss_pred             cCcccc-CCCCCCCEEEcCCCCCCCCCc---hhhhcCCCCCcEEEcCCCCCCcccchhhh----h-cCCCCCEEEecCcc
Q 024731          171 IDIKGL-DSLGNLEELDMSDNAINNLVI---PKELHNFTNLEELILDDSDLHISQLLQSI----A-SFTSLKYLSMGFCT  241 (263)
Q Consensus       171 ~p~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~~l----~-~l~~L~~L~l~~n~  241 (263)
                      ++. .+ ...+.|++|+|++|.++....   ...+..+++|++|++++|++++.. ...+    . +...|+.|++.+|.
T Consensus       360 l~~-~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g-~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         360 LCQ-GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG-ILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHH-HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH-HHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             hhh-hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH-HHHHHHHHHhCCCccCEEECCCCC
Confidence            221 22 234567777777777754211   112455677777777777776543 2222    2 23357777777777


Q ss_pred             cccc
Q 024731          242 LTGA  245 (263)
Q Consensus       242 l~~~  245 (263)
                      +...
T Consensus       438 ~~~~  441 (460)
T d1z7xw1         438 WSEE  441 (460)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            6643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=2.9e-09  Score=87.65  Aligned_cols=116  Identities=22%  Similarity=0.226  Sum_probs=89.5

Q ss_pred             cCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCC
Q 024731          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNL  182 (263)
Q Consensus       103 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L  182 (263)
                      .++++|+++++.++. +|+       .+++|++|++++|+++ .+|..   +.+|+.|++++|+++ .++.  +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~-lp~-------~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~--l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE-------LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS-------CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS--C--CTTC
T ss_pred             cCCCEEEeCCCCCCC-CCC-------CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh--h--cccc
Confidence            468999999999975 343       2468999999999999 67765   458999999999976 3442  2  2469


Q ss_pred             CEEEcCCCCCCCCCchhhhcCCCCCcEEEcCCCCCCcccchhhhhcCCCCCEEEecCcccc
Q 024731          183 EELDMSDNAINNLVIPKELHNFTNLEELILDDSDLHISQLLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       183 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      ++|++++|.+.. +|.  ++.+++|++|++++|.+...  +.   ....+..+++..+...
T Consensus       101 ~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~~~~~~~--~~---~~~~l~~l~~~~~~~~  153 (353)
T d1jl5a_         101 EYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKL--PD---LPPSLEFIAAGNNQLE  153 (353)
T ss_dssp             CEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCS
T ss_pred             cccccccccccc-ccc--hhhhccceeecccccccccc--cc---ccccccchhhcccccc
Confidence            999999999987 553  67899999999999988743  22   2456777877776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.4e-10  Score=99.01  Aligned_cols=133  Identities=25%  Similarity=0.231  Sum_probs=94.1

Q ss_pred             CCcCCcEEEccCcccCCCCCcccccccCCCCCCCEEEccCCcCCcc----ccccCC-CCCCCCEEEcCCCcCCCC----c
Q 024731          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLG-GLSSLRNLSLIGNRLIGS----I  171 (263)
Q Consensus       101 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~-~l~~L~~L~L~~n~l~~~----~  171 (263)
                      ....|+.++++++.++..........+...++|++|+|++|++++.    ++..+. ..+.|++|++++|.++..    +
T Consensus       310 ~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  389 (460)
T d1z7xw1         310 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  389 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHH
Confidence            4568999999999887554333233345677899999999999753    334443 467899999999998742    3


Q ss_pred             CccccCCCCCCCEEEcCCCCCCCCCchh---hhc-CCCCCcEEEcCCCCCCcccchhhh----hcCCCCCEE
Q 024731          172 DIKGLDSLGNLEELDMSDNAINNLVIPK---ELH-NFTNLEELILDDSDLHISQLLQSI----ASFTSLKYL  235 (263)
Q Consensus       172 p~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~-~l~~L~~L~l~~n~l~~~~~~~~l----~~l~~L~~L  235 (263)
                      +. .+..+++|++|++++|.++......   .+. +.+.|+.|++.+|.+.... ...+    ...++|++|
T Consensus       390 ~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~-~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         390 AA-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM-EDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HH-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH-HHHHHHHHHHCTTSEEE
T ss_pred             HH-HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH-HHHHHHHHHhCCCCEEe
Confidence            33 4667899999999999997643222   122 3457999999999998554 4333    356777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.8e-10  Score=82.97  Aligned_cols=112  Identities=22%  Similarity=0.101  Sum_probs=71.1

Q ss_pred             CCCCCCCEEEccCCcCCccccccCCCCCCCCEEEcCCCcCCCCcC-ccccCCCCCCCEEEcCCCCCCCCCchhhhcCCCC
Q 024731          128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID-IKGLDSLGNLEELDMSDNAINNLVIPKELHNFTN  206 (263)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  206 (263)
                      ..+..+..++..++... .++..+..+++|++|++++|+++..-+ ...+..+++|+.|++++|.++.. +........+
T Consensus        39 ~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l-~~l~~l~~~~  116 (162)
T d1koha1          39 VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLK  116 (162)
T ss_dssp             TTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCG-GGHHHHTTCC
T ss_pred             hhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccc-hhhhhhhccc
Confidence            33334444444444332 334444567889999999998874321 11456788999999999999874 3322334557


Q ss_pred             CcEEEcCCCCCCcccc------hhhhhcCCCCCEEEecCcccc
Q 024731          207 LEELILDDSDLHISQL------LQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       207 L~~L~l~~n~l~~~~~------~~~l~~l~~L~~L~l~~n~l~  243 (263)
                      |+.|++++|++.....      ...+..+|+|+.||  +..+.
T Consensus       117 L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v~  157 (162)
T d1koha1         117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD--GHELP  157 (162)
T ss_dssp             CSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET--TEECC
T ss_pred             cceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC--cCCCc
Confidence            8999999999875320      13356789999876  55553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.39  E-value=1e-07  Score=70.41  Aligned_cols=91  Identities=13%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             CCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCch---hhhcCCCCCcEEEcCCCCCCcc---
Q 024731          151 LGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVIP---KELHNFTNLEELILDDSDLHIS---  220 (263)
Q Consensus       151 l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~l~~~---  220 (263)
                      +...+.|++|++++|.+...    +.. .+...++|++|++++|.++.....   ..+...++|++|++++|.+...   
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~-~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhh-hhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            34445555555555554321    111 333455666777776666542111   1245566777777777654321   


Q ss_pred             ---cchhhhhcCCCCCEEEecCccc
Q 024731          221 ---QLLQSIASFTSLKYLSMGFCTL  242 (263)
Q Consensus       221 ---~~~~~l~~l~~L~~L~l~~n~l  242 (263)
                         .+...+...+.|+.|+++.+..
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCCc
Confidence               1144556677888888876654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.4e-08  Score=72.04  Aligned_cols=83  Identities=23%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             CCCCCCCEEEccCCcCCcc--ccccCCCCCCCCEEEcCCCcCCCCcCccccCCCCCCCEEEcCCCCCCCCCch------h
Q 024731          128 SRLNNLKFLYLDYNHFNNS--IFSSLGGLSSLRNLSLIGNRLIGSIDIKGLDSLGNLEELDMSDNAINNLVIP------K  199 (263)
Q Consensus       128 ~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~------~  199 (263)
                      ..+++|++|+|++|+++..  ++..+..+++|+.|++++|.+.. ++........+|+.|++++|.+......      .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3466777777777777642  23345566777777777777663 3321233344677777777777653321      1


Q ss_pred             hhcCCCCCcEEE
Q 024731          200 ELHNFTNLEELI  211 (263)
Q Consensus       200 ~l~~l~~L~~L~  211 (263)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245677777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.31  E-value=4.5e-07  Score=66.80  Aligned_cols=117  Identities=10%  Similarity=0.045  Sum_probs=84.2

Q ss_pred             cCCcCCcEEEccCc-ccCCCCCcccccccCCCCCCCEEEccCCcCCccc----cccCCCCCCCCEEEcCCCcCCCC----
Q 024731          100 TPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI----FSSLGGLSSLRNLSLIGNRLIGS----  170 (263)
Q Consensus       100 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~----  170 (263)
                      .+.++|++|+|+++ .++...-...+..+...++|++|+|++|.++...    ...+...+.|++|++++|.+...    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45689999999974 4653322234456788899999999999997433    33445678999999999998743    


Q ss_pred             cCccccCCCCCCCEEEcCCCCCCCCCc------hhhhcCCCCCcEEEcCCCCC
Q 024731          171 IDIKGLDSLGNLEELDMSDNAINNLVI------PKELHNFTNLEELILDDSDL  217 (263)
Q Consensus       171 ~p~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~l~~L~~L~l~~n~l  217 (263)
                      +- ..+...++|++|++++|.+.....      ...+...++|+.|+++.+..
T Consensus        92 l~-~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LL-RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HH-HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HH-HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            22 256778899999999997654211      12355678999999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.93  E-value=2.5e-06  Score=62.53  Aligned_cols=115  Identities=18%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             CCCCCCCEEEccC-CcCCcc----ccccCCCCCCCCEEEcCCCcCCCC----cCccccCCCCCCCEEEcCCCCCCCCCch
Q 024731          128 SRLNNLKFLYLDY-NHFNNS----IFSSLGGLSSLRNLSLIGNRLIGS----IDIKGLDSLGNLEELDMSDNAINNLVIP  198 (263)
Q Consensus       128 ~~l~~L~~L~Ls~-n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~  198 (263)
                      .+.++|++|++++ +.++..    +...+...++|++|++++|.+...    +.. .+...++++.+++++|.+......
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~-~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHH-HHhhcccchhhhhccccccchhHH
Confidence            3445566666654 334321    223344555666666666655422    111 334456677777777766543211


Q ss_pred             ---hhhcCCCCCcEEEc--CCCCCCccc---chhhhhcCCCCCEEEecCcccc
Q 024731          199 ---KELHNFTNLEELIL--DDSDLHISQ---LLQSIASFTSLKYLSMGFCTLT  243 (263)
Q Consensus       199 ---~~l~~l~~L~~L~l--~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~l~  243 (263)
                         ..+...++|+.++|  ++|.+....   +.+.+...+.|+.|+++.+...
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence               12556677876555  455665422   1455667888999988877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.90  E-value=8.6e-07  Score=65.07  Aligned_cols=117  Identities=21%  Similarity=0.135  Sum_probs=78.1

Q ss_pred             cCCcCCcEEEccC-cccCCCCCcccccccCCCCCCCEEEccCCcCCccc----cccCCCCCCCCEEEcCCCcCCCC----
Q 024731          100 TPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI----FSSLGGLSSLRNLSLIGNRLIGS----  170 (263)
Q Consensus       100 ~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~----  170 (263)
                      ...+.|++|++++ +.++...-......+...++|++|++++|.++...    ...+...++++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567888999887 45643332334455678889999999999887532    23445668899999999887533    


Q ss_pred             cCccccCCCCCCCEEEcC--CCCCCCCCc---hhhhcCCCCCcEEEcCCCCC
Q 024731          171 IDIKGLDSLGNLEELDMS--DNAINNLVI---PKELHNFTNLEELILDDSDL  217 (263)
Q Consensus       171 ~p~~~~~~l~~L~~L~L~--~n~l~~~~~---~~~l~~l~~L~~L~l~~n~l  217 (263)
                      +.. .+...++|+.++|.  +|.+.....   ...+...++|+.|++..+..
T Consensus        94 l~~-~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHH-HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            222 55677888876664  556644211   11256788999999987754