Citrus Sinensis ID: 024732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVTSTLLYISMFSVFINCKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEcccccHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEcccccEEHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEHHccHHHHHHcEEEEEEEEEc
Coil and Loop (DISEMBL)
maqptqpdpflevcrdsdAGAAFVLEskgewwhagfhlttaivgptiltlpyvfrglgwglgftCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMysdlypngslkLYEFIAMVTVVMIVLSqlptfhslrHINLVSLLLSLGYSFLVVGACinagfsknappkdyslessksariFSAFTSISIIAAIFgngilpeiQVTSTLLYISMFSVFINCKI
Flexible Loop (DISEMBL)
maqptqpdpfleVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVTSTLLYISMFSVFINCKI
Low Complexity Region (SEG)
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKsarifsaftsisiiaaifGNGILPEIQVTSTLLYISMFSVFINCKI
Disordered region (IsUnstruct)
**********LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS***************ARIFSAFTSISIIAAIFGNGILPEIQVTSTLLYISMFSVFINC**
Disordered Region (DISOPRED)
*************************ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVTSTLLYISMFSVFINCKI
Disordered Region (DISEMBL)
********PFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVTSTLLYISMFSVFINCKI
Disordered Region (DISPRO)
****************SDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVTSTLLYISMFSVFINCKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVTSTLLYISMFSVFINCKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q8L4X4	452	Probable GABA transporter	yes	no	0.935	0.544	0.825	1e-117
F4HW02	451	GABA transporter 1 OS=Ara	no	no	0.870	0.507	0.497	3e-56
Q9SR44	441	Lysine histidine transpor	no	no	0.863	0.514	0.276	4e-21
Q9LRB5	441	Lysine histidine transpor	no	no	0.863	0.514	0.280	1e-20
Q9FKS8	446	Lysine histidine transpor	no	no	0.885	0.522	0.289	5e-20
Q9C9J0	448	Lysine histidine transpor	no	no	0.817	0.479	0.297	6e-19
Q9C733	453	Lysine histidine transpor	no	no	0.866	0.503	0.297	1e-18
O22719	451	Lysine histidine transpor	no	no	0.813	0.474	0.285	2e-17
Q9SJP9	436	Proline transporter 3 OS=	no	no	0.794	0.479	0.295	4e-15
Q9SS86	455	Lysine histidine transpor	no	no	0.817	0.472	0.272	5e-15

>sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana GN=At5g41800 PE=2 SV=1

 Score =  422 bits (1086), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/246 (82%), Positives = 218/246 (88%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQVT 246
           PEIQ T
Sbjct: 241 PEIQAT 246

May be involved in the transport of GABA.
Arabidopsis thaliana (taxid: 3702)

>sp|F4HW02|GAT1_ARATH GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1

 Score =  218 bits (555), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/229 (49%), Positives = 152/229 (66%)

Query: 18  DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSY 77
           DAG+ FVL+SKG WWH GFHLTT+IV P +L+LPY F+ LGW  G +CL     VTFYSY
Sbjct: 19  DAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVTFYSY 78

Query: 78  YLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137
            L+S  L+H    G R++RFR++A  +L   W  Y+V  IQ A+  GV I   LL G+CL
Sbjct: 79  TLLSLTLEHHASLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLGGQCL 138

Query: 138 QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197
           + MY  + PNG +KL+EF+ +   +++VL+Q P+FHSLR+IN +SLLL L YS     A 
Sbjct: 139 KAMYLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASAAAAS 198

Query: 198 INAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVT 246
           I  G   NAP KDY++      R+F  F +++IIA  +GNGI+PEIQ T
Sbjct: 199 IYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQAT 247

High affinity gamma-aminobutyric acid (GABA) transporter probably involved in GABA uptake into cells. When expressed in a heterologous system (Xenopus oocytes), imports GABA, butylamine, beta- and L-Alanine, 5-aminovaleric acid, 6-aminocaproic acid and 8-aminocaprylic acid, but does not mediate the transport of proline or glycine betaine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 117/235 (49%), Gaps = 8/235 (3%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           ++ D           +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +TF
Sbjct: 17  KNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITF 76

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G
Sbjct: 77  YTLWQMVQM--HEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGG 134

Query: 135 ECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
           + L+ ++  L  +  +++   +I +   +  VL+ LP F+S+  ++L + ++SL YS + 
Sbjct: 135 KSLKKIHDLLCTDCKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIA 194

Query: 194 VGACINAGFSKNAPPKDYSLE-SSKSARIFSAFTSISIIA-AIFGNGILPEIQVT 246
               +  G   N    DYS   S+ S  +F+   ++  +A A  G+ ++ EIQ T
Sbjct: 195 WATSVKKGVHPNV---DYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQAT 246

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 8/235 (3%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           ++ D           +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +T 
Sbjct: 17  KNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITL 76

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G
Sbjct: 77  YTLWQMVEM--HEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGG 134

Query: 135 ECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
             L+ ++  + P+   ++   +I +   V  V+S LP F+S+  I+L + ++SL YS + 
Sbjct: 135 ASLKKVHQLVCPDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIA 194

Query: 194 VGACINAGFSKNAPPKDYSLESSKS-ARIFSAFTSISIIA-AIFGNGILPEIQVT 246
             A ++ G     P  DYS  +S    ++F+   ++  +A A  G+ ++ EIQ T
Sbjct: 195 WAASVHKGVH---PDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQAT 246

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 16/249 (6%)

Query: 6   QPDPFLEVCRDSDAGAAFVLES--KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           Q D  L   R  +      + S    +WW++ FH  TA+VG  +L LPY    LGWG G 
Sbjct: 11  QDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGI 70

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
             L +   +T Y+ + M ++  H    G+R  R+ EL     G     Y V+  Q  +  
Sbjct: 71  AVLVLSWVITLYTLWQMVEM--HEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query: 124 GVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179
           GV I  ++  G+ L    +++  D  P   +KL  FI +   V  VLS LP F+S+  ++
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVCDDCKP---IKLTYFIMIFASVHFVLSHLPNFNSISGVS 185

Query: 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSA-RIFSAFTSISIIA-AIFGN 237
           L + ++SL YS +   +  + G  ++     Y  ++  +A  +F+ F+ +  +A A  G+
Sbjct: 186 LAAAVMSLSYSTIAWASSASKGVQEDV---QYGYKAKTTAGTVFNFFSGLGDVAFAYAGH 242

Query: 238 GILPEIQVT 246
            ++ EIQ T
Sbjct: 243 NVVLEIQAT 251

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 7/222 (3%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
           + +W+++ FH  TA+VG  +L LP+    LGWG G   + +   +TFYS + M ++  H 
Sbjct: 36  EAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQL--HE 93

Query: 88  EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN 147
              G+R  R+ EL  +  G    ++ V+  Q  +     I   +  G+ L+     L+PN
Sbjct: 94  AVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPN 153

Query: 148 -GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
              ++   +I     + +VLSQ P F+S++ ++L++ L+S  YS +   A I  G     
Sbjct: 154 LEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHR- 212

Query: 207 PPKDYSLESSKSAR-IFSAFTSISIIAAIF-GNGILPEIQVT 246
            P  Y +     A  +F AF  I  IA  F G+ ++ EIQ T
Sbjct: 213 -PSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQAT 253

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 14/242 (5%)

Query: 11  LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG 70
           LE  ++ D           +WW++ FH  TA+VG  +L LP+    LGWG G   L +  
Sbjct: 25  LERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSW 84

Query: 71  FVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAI 130
            +T Y+ + M ++  H    G+R  R+ EL     G     Y ++  Q  +  GV I  +
Sbjct: 85  IITLYTLWQMVEM--HEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYM 142

Query: 131 LLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS 186
           +  G+ L    +I   D  P   ++L  FI +      VLS LP F+S+  ++LV+ ++S
Sbjct: 143 VTGGQSLKKFHEIACQDCSP---IRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMS 199

Query: 187 LGYSFLVVGACINAGFSKNAPPKDYSLESSKSAR-IFSAFTSISIIA-AIFGNGILPEIQ 244
           L YS +   A    G  ++     Y  +S  +A  + S FT +  IA A  G+ ++ EIQ
Sbjct: 200 LSYSTIAWTATAAKGVQEDV---QYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQ 256

Query: 245 VT 246
            T
Sbjct: 257 AT 258

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 10/224 (4%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
              W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+++ M ++ +  
Sbjct: 35  NANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMF 94

Query: 88  EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS---DL 144
           E  G+R  R+ EL     G     Y V+ +Q  + T   I  ++  GE L+ ++      
Sbjct: 95  E--GKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGD 152

Query: 145 YPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSK 204
           Y    LK+  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G + 
Sbjct: 153 YECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVAN 212

Query: 205 NAPPKDYSLESSKSARIFSAFTSI--SIIAAIFGNGILPEIQVT 246
           N    +Y  +   +  +  AF      +  A  G+ ++ EIQ T
Sbjct: 213 NV---EYGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQAT 253

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJP9|PROT3_ARATH Proline transporter 3 OS=Arabidopsis thaliana GN=PROT3 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 18/227 (7%)

Query: 27  SKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLD 85
           S   W+ A F LTT+I    +L     V   LGW  G   L +   ++ Y+  L++K+  
Sbjct: 26  SSDSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKL-- 83

Query: 86  HCEKAGRRHIRFRELAADVLGSG-----WMFYFVIFIQTAINTGVGIGAILLAGECLQIM 140
             E  G+RHIR+R+LA  + G       W+  +V          +  G I+LAG  L+ +
Sbjct: 84  -HEFGGKRHIRYRDLAGFIYGRKAYCLTWVLQYVNLFM------INCGFIILAGSALKAV 136

Query: 141 YSDLYPNGSLKLYEFIAMVTVVMIVLS-QLPTFHSLRHINLVSLLLSLGYSFLVVGACIN 199
           Y     + ++KL  FIA+  ++  V +  +P   +L     VS +LSL Y  +VV   ++
Sbjct: 137 YVLFRDDHAMKLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIY--IVVAIVLS 194

Query: 200 AGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVT 246
                 AP +DY ++ S  +++F+   + + +  +F  G+LPEIQ T
Sbjct: 195 VKDGVKAPSRDYEIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQAT 241

Proline transporter that mediates proline and glycine betaine transport. When expressed in a heterologous system (yeast), imports L-proline, glycine betaine and GABA across the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 9/224 (4%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
              W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+ + M ++ +  
Sbjct: 33  NANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMHEMF 92

Query: 88  EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN 147
           E  G+R  R+ EL     G     Y ++ +Q  +   V I  ++  G+ L+ ++     +
Sbjct: 93  E--GQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDLALGD 150

Query: 148 G----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS 203
           G     L++  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G +
Sbjct: 151 GDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKGAT 210

Query: 204 KNAPPKDYSLESSKSARIF-SAFTSISIIAAIFGNGILPEIQVT 246
             +    Y   ++     F SA   ++   A  G+ ++ EIQ T
Sbjct: 211 TGSVEYGYRKRTTSVPLAFLSALGEMAFAYA--GHNVVLEIQAT 252

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
225426008	455	PREDICTED: lysine histidine transporter	0.935	0.540	0.865	1e-122
255537737	452	amino acid transporter, putative [Ricinu	0.885	0.515	0.901	1e-121
224058347	453	proline transporter [Populus trichocarpa	0.935	0.543	0.866	1e-121
297805462	452	hypothetical protein ARALYDRAFT_493805 [	0.935	0.544	0.829	1e-118
224072174	453	proline transporter [Populus trichocarpa	0.882	0.512	0.883	1e-117
21554158	452	amino acid permease-like protein [Arabid	0.935	0.544	0.825	1e-116
18422139	452	Transmembrane amino acid transporter fam	0.935	0.544	0.825	1e-116
363807418	445	uncharacterized protein LOC100815232 [Gl	0.908	0.537	0.817	1e-114
449464072	454	PREDICTED: probable GABA transporter 2-l	0.923	0.535	0.818	1e-108
449505054	454	PREDICTED: LOW QUALITY PROTEIN: probable	0.923	0.535	0.814	1e-108

>gi|225426008|ref|XP_002273161.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|297742313|emb|CBI34462.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/246 (86%), Positives = 225/246 (91%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           +A+P   DPF E  R+ DAGA FVLESKG WWHAGFHLTTAIVGPTILTLPY FRGLGWG
Sbjct: 4   IAEPLHVDPFPEQNREEDAGAVFVLESKGTWWHAGFHLTTAIVGPTILTLPYAFRGLGWG 63

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVI IQ A
Sbjct: 64  LGFLCLTTMGLVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIVIQAA 123

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTGVGIGAILL GECLQIMYSDL+PNGSLKLYEFIAMVT VMI+LSQLPTFHSLRHINL
Sbjct: 124 INTGVGIGAILLGGECLQIMYSDLFPNGSLKLYEFIAMVTAVMIILSQLPTFHSLRHINL 183

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
           VSL LSLGY+FLVVGACI+AG SK+ PP+DYSLE+S+SAR+FSAFTSISIIAAIFGNGIL
Sbjct: 184 VSLFLSLGYTFLVVGACIHAGTSKHPPPRDYSLETSESARVFSAFTSISIIAAIFGNGIL 243

Query: 241 PEIQVT 246
           PEIQ T
Sbjct: 244 PEIQAT 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537737|ref|XP_002509935.1| amino acid transporter, putative [Ricinus communis] gi|223549834|gb|EEF51322.1| amino acid transporter, putative [Ricinus communis]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/233 (90%), Positives = 224/233 (96%)

Query: 14  CRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT 73
           CR+ DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF CLTVMG VT
Sbjct: 14  CREVDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTVMGVVT 73

Query: 74  FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA 133
           FYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA
Sbjct: 74  FYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLA 133

Query: 134 GECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLV 193
           GECLQIMYS++YP+G LKL+EFIAMVT VM+VLSQLPTFHSLRH+N+ SLLLSLGY+FLV
Sbjct: 134 GECLQIMYSNIYPSGPLKLFEFIAMVTAVMVVLSQLPTFHSLRHLNMASLLLSLGYTFLV 193

Query: 194 VGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVT 246
           VGACI+AG SKNAPP+DYSLESS+SAR+FSAFTSISIIAAIFGNGILPEIQ T
Sbjct: 194 VGACISAGLSKNAPPRDYSLESSESARVFSAFTSISIIAAIFGNGILPEIQAT 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058347|ref|XP_002299485.1| proline transporter [Populus trichocarpa] gi|222846743|gb|EEE84290.1| proline transporter [Populus trichocarpa]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/247 (86%), Positives = 226/247 (91%), Gaps = 1/247 (0%)

Query: 1   MAQPTQPDPFL-EVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGW 59
           MA P + DPFL +  R+ DAGA FVLESKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW
Sbjct: 1   MAPPPKSDPFLADSQREVDAGAVFVLESKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGW 60

Query: 60  GLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQT 119
           GLGF CLTVMG VTFY+YYLMSKVLD+CE+ GRRHIRFRELAADVLGSGWMFYFVI IQT
Sbjct: 61  GLGFFCLTVMGMVTFYAYYLMSKVLDYCERDGRRHIRFRELAADVLGSGWMFYFVIVIQT 120

Query: 120 AINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN 179
           AINTGVGIGAILLAGECLQIMYS L P+G LKLYEFIAMVTVVMIVLSQ PTFHSLRHIN
Sbjct: 121 AINTGVGIGAILLAGECLQIMYSSLSPDGPLKLYEFIAMVTVVMIVLSQFPTFHSLRHIN 180

Query: 180 LVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGI 239
           L SL LSLGYSF+VVGACI+AG SKNAPP+DYSLESS+SAR+FSAFTSISIIAAIFGNGI
Sbjct: 181 LASLFLSLGYSFIVVGACIHAGLSKNAPPRDYSLESSESARVFSAFTSISIIAAIFGNGI 240

Query: 240 LPEIQVT 246
           LPEIQ T
Sbjct: 241 LPEIQAT 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805462|ref|XP_002870615.1| hypothetical protein ARALYDRAFT_493805 [Arabidopsis lyrata subsp. lyrata] gi|297316451|gb|EFH46874.1| hypothetical protein ARALYDRAFT_493805 [Arabidopsis lyrata subsp. lyrata]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/246 (82%), Positives = 218/246 (88%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFSVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSGWMFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGWMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS LYP G+LKLYEFIAMVT VM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLYPQGTLKLYEFIAMVTAVMMVLSQLPSFHSLRHINF 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SL+LSLGY+FLVVGACIN G SKNAP +DYSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLILSLGYTFLVVGACINLGLSKNAPKRDYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQVT 246
           PEIQ T
Sbjct: 241 PEIQAT 246

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072174|ref|XP_002303637.1| proline transporter [Populus trichocarpa] gi|222841069|gb|EEE78616.1| proline transporter [Populus trichocarpa]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/232 (88%), Positives = 216/232 (93%)

Query: 15  RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTF 74
           R+ DAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPYVF+GLGW LGF CLTVMG VTF
Sbjct: 16  REVDAGAVFVLQSKGEWWHAGFHLTTAIVGPTILTLPYVFKGLGWALGFFCLTVMGMVTF 75

Query: 75  YSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 134
           Y+YYLMSKVLD+CEK GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG
Sbjct: 76  YAYYLMSKVLDYCEKDGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAG 135

Query: 135 ECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV 194
           ECLQIMYS L P+G LKLYEFIAMVTVVMIVLSQLPTFHSLRHINL SL LSLGY+F+VV
Sbjct: 136 ECLQIMYSSLSPDGPLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLASLFLSLGYTFIVV 195

Query: 195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQVT 246
           GAC+ AG SKNAP +DYSLESS SAR+FSAFTSISIIAAIFGNGILPEIQ T
Sbjct: 196 GACVQAGLSKNAPSRDYSLESSGSARVFSAFTSISIIAAIFGNGILPEIQAT 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554158|gb|AAM63237.1| amino acid permease-like protein [Arabidopsis thaliana]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/246 (82%), Positives = 218/246 (88%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFFCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINF 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQVT 246
           PEIQ T
Sbjct: 241 PEIQAT 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422139|ref|NP_568597.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|75245603|sp|Q8L4X4.1|GAT2_ARATH RecName: Full=Probable GABA transporter 2 gi|20466438|gb|AAM20536.1| amino acid permease-like protein [Arabidopsis thaliana] gi|22136372|gb|AAM91264.1| amino acid permease-like protein [Arabidopsis thaliana] gi|332007347|gb|AED94730.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/246 (82%), Positives = 218/246 (88%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct: 1   MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct: 61  LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct: 121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S S ++FSAFTSISIIAAIFGNGIL
Sbjct: 181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query: 241 PEIQVT 246
           PEIQ T
Sbjct: 241 PEIQAT 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807418|ref|NP_001242384.1| uncharacterized protein LOC100815232 [Glycine max] gi|255640094|gb|ACU20338.1| unknown [Glycine max]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/246 (81%), Positives = 220/246 (89%), Gaps = 7/246 (2%)

Query: 1   MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
           MA+P + D       + D GAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWG
Sbjct: 1   MAEPPKGD-------EEDGGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWG 53

Query: 61  LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
           LGF CLTVMG VTFYSY+LMSKVLDHCEK+GRRHIRFRELAADVLGSGWMFYFVIFIQTA
Sbjct: 54  LGFMCLTVMGIVTFYSYFLMSKVLDHCEKSGRRHIRFRELAADVLGSGWMFYFVIFIQTA 113

Query: 121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
           INTGVG+GAILLAGECLQIMYS++ P+G LKLY FIAMVTV+MIVLSQLP+FHSLRHINL
Sbjct: 114 INTGVGVGAILLAGECLQIMYSNISPHGPLKLYHFIAMVTVIMIVLSQLPSFHSLRHINL 173

Query: 181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGIL 240
            SLL +LGY+ LVVGACI+AG S+NAPP+ YSLE  KSAR FSAFTS+SI+AAIFGNGIL
Sbjct: 174 CSLLFALGYTILVVGACIHAGTSENAPPRVYSLEPKKSARAFSAFTSMSILAAIFGNGIL 233

Query: 241 PEIQVT 246
           PEIQ T
Sbjct: 234 PEIQAT 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464072|ref|XP_004149753.1| PREDICTED: probable GABA transporter 2-like [Cucumis sativus]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/243 (81%), Positives = 217/243 (89%)

Query: 4   PTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           P   D F +  R +DAGAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF
Sbjct: 6   PITHDLFTDTERQNDAGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGF 65

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
            CLT+M  VTFYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT
Sbjct: 66  FCLTIMAVVTFYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 125

Query: 124 GVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183
           GVGIGAILLAG+CL+I+YS L PNGS+KLYEFIA+VT VMI+LSQLPTFHSLRH+NL SL
Sbjct: 126 GVGIGAILLAGQCLEILYSSLNPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVNLGSL 185

Query: 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEI 243
           LLSLGY+FLVV ACI A  SK AP ++Y+LESS  +R FSAFTSISI+AAIFGNGILPEI
Sbjct: 186 LLSLGYAFLVVAACIIAARSKEAPTREYTLESSPKSRTFSAFTSISILAAIFGNGILPEI 245

Query: 244 QVT 246
           Q T
Sbjct: 246 QAT 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505054|ref|XP_004162363.1| PREDICTED: LOW QUALITY PROTEIN: probable GABA transporter 2-like [Cucumis sativus]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/243 (81%), Positives = 216/243 (88%)

Query: 4   PTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGF 63
           P   D F +  R +DAGAAFVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGWGLGF
Sbjct: 6   PITHDLFTDTERQNDAGAAFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGF 65

Query: 64  TCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINT 123
            CLT+M  VTFYSY+LMSKVLDHCEKAGRRHIRFRELAADVLGSGWM YFVIFIQTAINT
Sbjct: 66  FCLTIMAVVTFYSYFLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMXYFVIFIQTAINT 125

Query: 124 GVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL 183
           GVGIGAILLAG+CL+I+YS L PNGS+KLYEFIA+VT VMI+LSQLPTFHSLRH+NL SL
Sbjct: 126 GVGIGAILLAGQCLEILYSSLNPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVNLGSL 185

Query: 184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEI 243
           LLSLGY+FLVV ACI A  SK AP ++Y+LESS  +R FSAFTSISI+AAIFGNGILPEI
Sbjct: 186 LLSLGYAFLVVAACIIAARSKEAPTREYTLESSPKSRTFSAFTSISILAAIFGNGILPEI 245

Query: 244 QVT 246
           Q T
Sbjct: 246 QAT 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2152995	452	AT5G41800 [Arabidopsis thalian	0.935	0.544	0.764	5e-99
TAIR|locus:2199978	451	AT1G08230 [Arabidopsis thalian	0.870	0.507	0.471	6.3e-53
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.802	0.478	0.309	5.5e-22
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.806	0.480	0.272	5.6e-20
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.802	0.473	0.280	9.8e-20
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.806	0.480	0.281	2e-19
TAIR|locus:2008435	451	AT1G61270 [Arabidopsis thalian	0.806	0.470	0.286	2.2e-19
TAIR|locus:2008154	453	AT1G48640 [Arabidopsis thalian	0.885	0.514	0.261	4.7e-18
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.817	0.479	0.261	9.4e-17
TAIR|locus:2044835	436	ProT3 "proline transporter 3"	0.809	0.488	0.295	3.1e-16

TAIR|locus:2152995 AT5G41800 [Arabidopsis thaliana (taxid:3702)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 188/246 (76%), Positives = 201/246 (81%)

Query:     1 MAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWG 60
             M  P +PDPF     DSDAGA FVL+SKGEWWHAGFHLTTAIVGPTILTLPY FRGLGW 
Sbjct:     1 MTDPPRPDPFPVTRLDSDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWW 60

Query:    61 LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTA 120
             LGF CLT MG VTFY+YYLMSKVLDHCEK+GRRHIRFRELAADVLGSG MFY VIFIQTA
Sbjct:    61 LGFVCLTTMGLVTFYAYYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTA 120

Query:   121 INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL 180
             INTG+GIGAILLAG+CL IMYS L+P G+LKLYEFIAMVTVVM+VLSQLP+FHSLRHIN 
Sbjct:   121 INTGIGIGAILLAGQCLDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINC 180

Query:   181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGIL 240
              SLLLSLGY+FLVVGACIN G SKNAP ++YSLE S                   GNGIL
Sbjct:   181 ASLLLSLGYTFLVVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGIL 240

Query:   241 PEIQVT 246
             PEIQ T
Sbjct:   241 PEIQAT 246

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 108/229 (47%), Positives = 141/229 (61%)

Query:    18 DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSY 77
             DAG+ FVL+SKG WWH GFHLTT+IV P +L+LPY F+ LGW  G +CL     VTFYSY
Sbjct:    19 DAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVTFYSY 78

Query:    78 YLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL 137
              L+S  L+H    G R++RFR++A  +L   W  Y+V  IQ A+  GV I   LL G+CL
Sbjct:    79 TLLSLTLEHHASLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLGGQCL 138

Query:   138 QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC 197
             + MY  + PNG +KL+EF+ +   +++VL+Q P+FHSLR+IN +SLLL L YS     A 
Sbjct:   139 KAMYLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASAAAAS 198

Query:   198 INAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQVT 246
             I  G   NAP KDY++                      GNGI+PEIQ T
Sbjct:   199 IYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQAT 247

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IGI

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 260 (96.6 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 69/223 (30%), Positives = 109/223 (48%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G   L +   +T Y+ + M ++  H   
Sbjct:    30 KWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVLILSWIITLYTLWQMVEM--HEMV 87

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG- 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G+ L+  + D+   G 
Sbjct:    88 PGKRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLK-KFHDVLCEGH 146

Query:   149 ---SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 205
                ++KL  FI +   V  VLSQLP F+S+  ++L + ++SL YS +  GA ++ G  K 
Sbjct:   147 GCKNIKLTYFIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGASVDKG--KV 204

Query:   206 APPKDYSLES--SKXXXXXXXXXXXXXXXXXXGNGILPEIQVT 246
             A   DY L +  S                   G+ ++ EIQ T
Sbjct:   205 ADV-DYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQAT 246

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 60/220 (27%), Positives = 105/220 (47%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +TFY+ + M ++  H   
Sbjct:    32 KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITFYTLWQMVQM--HEMV 89

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-G 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G+ L+ ++  L  +  
Sbjct:    90 PGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCK 149

Query:   149 SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPP 208
             +++   +I +   +  VL+ LP F+S+  ++L + ++SL YS +     +  G   N   
Sbjct:   150 NIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNV-- 207

Query:   209 KDYSLESSKXXXXXXXXXXXXX--XXXXXGNGILPEIQVT 246
              DYS  +S                     G+ ++ EIQ T
Sbjct:   208 -DYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQAT 246

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 9.8e-20, P = 9.8e-20
 Identities = 62/221 (28%), Positives = 103/221 (46%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L LPY    LGWG G   L +   +T Y+ + M ++  H   
Sbjct:    37 KWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEM--HEMV 94

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLY 145
              G+R  R+ EL     G     Y V+  Q  +  GV I  ++  G+ L    +++  D  
Sbjct:    95 PGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCK 154

Query:   146 PNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKN 205
             P   +KL  FI +   V  VLS LP F+S+  ++L + ++SL YS +   +  + G  ++
Sbjct:   155 P---IKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQED 211

Query:   206 APPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQVT 246
                  Y  +++                   G+ ++ EIQ T
Sbjct:   212 VQ-YGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQAT 251

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 62/220 (28%), Positives = 105/220 (47%)

Query:    30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK 89
             +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +T Y+ + M ++  H   
Sbjct:    32 KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQMVEM--HEIV 89

Query:    90 AGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-G 148
              G+R  R+ EL     G     + V+  Q  +  GV I  ++  G  L+ ++  + P+  
Sbjct:    90 PGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCK 149

Query:   149 SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPP 208
              ++   +I +   V  V+S LP F+S+  I+L + ++SL YS +   A ++ G     P 
Sbjct:   150 EIRTTFWIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVH---PD 206

Query:   209 KDYSLESSKXXXXXXXXXXXXX--XXXXXGNGILPEIQVT 246
              DYS  +S                     G+ ++ EIQ T
Sbjct:   207 VDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQAT 246

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 63/220 (28%), Positives = 101/220 (45%)

Query:    31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA 90
             W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+++ M ++ +  E  
Sbjct:    38 WYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFE-- 95

Query:    91 GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYP 146
             G+R  R+ EL     G     Y V+ +Q  + T   I  ++  GE L    Q+   D Y 
Sbjct:    96 GKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGD-YE 154

Query:   147 NGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
                LK+  FI +      VLS L  F+S+  ++LV+ ++S+ YS +   A +  G + N 
Sbjct:   155 CRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNV 214

Query:   207 PPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQVT 246
                 Y   ++                   G+ ++ EIQ T
Sbjct:   215 E-YGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLEIQAT 253

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 62/237 (26%), Positives = 105/237 (44%)

Query:    11 LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG 70
             LE  ++ D           +WW++ FH  TA+VG  +L LP+    LGWG G   L +  
Sbjct:    25 LERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSW 84

Query:    71 FVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAI 130
              +T Y+ + M ++  H    G+R  R+ EL     G     Y ++  Q  +  GV I  +
Sbjct:    85 IITLYTLWQMVEM--HEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYM 142

Query:   131 LLAGECLQIMYSDLYPNGS-LKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGY 189
             +  G+ L+  +     + S ++L  FI +      VLS LP F+S+  ++LV+ ++SL Y
Sbjct:   143 VTGGQSLKKFHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSY 202

Query:   190 SFLVVGACINAGFSKNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQVT 246
             S +   A    G  ++     Y   ++                   G+ ++ EIQ T
Sbjct:   203 STIAWTATAAKGVQEDVQ-YGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQAT 258

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 9.4e-17, P = 9.4e-17
 Identities = 58/222 (26%), Positives = 101/222 (45%)

Query:    28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC 87
             + +W+++ FH  TA+VG  +L LP+    LGWG G   + +   +TFYS + M ++  H 
Sbjct:    36 EAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQL--HE 93

Query:    88 EKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN 147
                G+R  R+ EL  +  G    ++ V+  Q  +     I   +  G+ L+     L+PN
Sbjct:    94 AVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPN 153

Query:   148 -GSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
                ++   +I     + +VLSQ P F+S++ ++L++ L+S  YS +   A I  G     
Sbjct:   154 LEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHR- 212

Query:   207 PPKDYSLESSKXXXXXXXXXXX--XXXXXXXGNGILPEIQVT 246
              P  Y +                        G+ ++ EIQ T
Sbjct:   213 -PSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQAT 253

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2044835 ProT3 "proline transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 3.1e-16, P = 3.1e-16
 Identities = 66/223 (29%), Positives = 105/223 (47%)

Query:    27 SKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLD 85
             S   W+ A F LTT+I    +L     V   LGW  G   L +   ++ Y+  L++K+  
Sbjct:    26 SSDSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKL-- 83

Query:    86 HCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTG-VGIGAILLAGECLQIMYSDL 144
             H E  G+RHIR+R+LA  + G     Y + ++   +N   +  G I+LAG  L+ +Y   
Sbjct:    84 H-EFGGKRHIRYRDLAGFIYGR--KAYCLTWVLQYVNLFMINCGFIILAGSALKAVYVLF 140

Query:   145 YPNGSLKLYEFIAMVTVVMIVLS-QLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFS 203
               + ++KL  FIA+  ++  V +  +P   +L     VS +LSL Y  +VV   ++    
Sbjct:   141 RDDHAMKLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIY--IVVAIVLSVKDG 198

Query:   204 KNAPPKDYSLESSKXXXXXXXXXXXXXXXXXXGNGILPEIQVT 246
               AP +DY ++ S                     G+LPEIQ T
Sbjct:   199 VKAPSRDYEIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQAT 241

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI;RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L4X4	GAT2_ARATH	No assigned EC number	0.8252	0.9353	0.5442	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	4e-26

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  105 bits (263), Expect = 4e-26
 Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 4/218 (1%)

Query: 28  KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH- 86
               W A F+L  AI+G  +L+LPY F+ LGW  G   L ++G ++ Y+ +L+ +   + 
Sbjct: 2   TISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYV 61

Query: 87  CEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP 146
            +  G+R   + +L   + G       ++F       GV I  ++ AG+ L  ++   + 
Sbjct: 62  DKVKGKRRKSYGDLGYRLFG-PKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 147 NGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNA 206
              + L  FI +  ++ I LS +P   +L  ++LV+ + SL    LV+        +   
Sbjct: 121 TCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQG 180

Query: 207 PPKDYSLESSKSARIFSAFTSISIIAAIFGNGILPEIQ 244
                +  + K AR+F A     I+ A  G+ +L  IQ
Sbjct: 181 VGSLGAKTNIKLARLFLAIG--IIVFAFEGHAVLLPIQ 216

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.98
KOG1304	449	consensus Amino acid transporters [Amino acid tran	99.98
PLN03074	473	auxin influx permease; Provisional	99.97
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.94
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.94
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.93
PRK10483	414	tryptophan permease; Provisional	99.77
PRK09664	415	tryptophan permease TnaB; Provisional	99.74
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.73
PRK15132	403	tyrosine transporter TyrP; Provisional	99.68
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.64
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.52
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.38
PRK10655	438	potE putrescine transporter; Provisional	98.94
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.88
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.85
KOG3832	319	consensus Predicted amino acid transporter [Genera	98.83
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.81
PRK11021	410	putative transporter; Provisional	98.81
PRK11387	471	S-methylmethionine transporter; Provisional	98.79
PRK10644	445	arginine:agmatin antiporter; Provisional	98.78
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.77
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.77
TIGR00909	429	2A0306 amino acid transporter.	98.76
PRK10249	458	phenylalanine transporter; Provisional	98.75
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.69
PRK10238	456	aromatic amino acid transporter; Provisional	98.68
PRK10746	461	putative transport protein YifK; Provisional	98.65
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.6
PRK10836	489	lysine transporter; Provisional	98.6
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.57
TIGR00913	478	2A0310 amino acid permease (yeast).	98.57
PRK15049	499	L-asparagine permease; Provisional	98.56
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.56
PRK10580	457	proY putative proline-specific permease; Provision	98.55
TIGR00911	501	2A0308 L-type amino acid transporter.	98.45
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.42
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.4
TIGR00930	953	2a30 K-Cl cotransporter.	98.35
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.3
KOG1287	479	consensus Amino acid transporters [Amino acid tran	98.25
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.24
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.2
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.09
PRK15238	496	inner membrane transporter YjeM; Provisional	97.72
COG3949	349	Uncharacterized membrane protein [Function unknown	97.65
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.64
COG0833	541	LysP Amino acid transporters [Amino acid transport	97.58
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	97.51
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.47
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	97.44
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.3
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.02
PRK11375	484	allantoin permease; Provisional	96.83
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	96.8
KOG1286	554	consensus Amino acid transporters [Amino acid tran	96.66
PRK09442	483	panF sodium/panthothenate symporter; Provisional	96.49
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	96.26
PRK15015	701	carbon starvation protein A; Provisional	96.12
COG1966	575	CstA Carbon starvation protein, predicted membrane	95.98
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	95.98
TIGR00813	407	sss transporter, SSS family. have different number	95.83
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	95.23
PRK12488	549	acetate permease; Provisional	95.19
PRK11017	404	codB cytosine permease; Provisional	94.95
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	94.4
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	94.37
PRK09395	551	actP acetate permease; Provisional	94.0
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	93.85
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	92.9
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	92.28
COG1457	442	CodB Purine-cytosine permease and related proteins	90.22
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	89.55
KOG1289	550	consensus Amino acid transporters [Amino acid tran	88.96
PRK15433	439	branched-chain amino acid transport system 2 carri	88.03
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	87.92
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	87.7
PRK15419	502	proline:sodium symporter PutP; Provisional	81.49
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	80.22

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-41  Score=307.30  Aligned_cols=232  Identities=31%  Similarity=0.523  Sum_probs=204.4

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccccc-ccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCE-KAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~-~~~~~~~sy~~l~~~  103 (263)
                      .+|++||+++++|.++.++|+|+|+||||++++||+.|+++|+..++++.||+++|.+|.+.++ ..++|+++|.|++++
T Consensus        34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~  113 (437)
T KOG1303|consen   34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA  113 (437)
T ss_pred             cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999999864 455677899999999


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc-cchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      +||++ +++++.++++..++|+|++|++..+|++..+++..+.++ .++.+.|+++++++.+|++++||++.++++|..+
T Consensus       114 afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~  192 (437)
T KOG1303|consen  114 AFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVG  192 (437)
T ss_pred             HhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHH
Confidence            99995 699999999999999999999999999999998877554 5556778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhheeeec
Q 024732          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVFINC  261 (263)
Q Consensus       183 ~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~~~~  261 (263)
                      +++++.+.++.++.++.++...+.+..++...+...    ..++++|+++|+| ||+++||||++||+|.+.+++++++.
T Consensus       193 avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~----~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~  268 (437)
T KOG1303|consen  193 AVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIP----TVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISY  268 (437)
T ss_pred             HHHHHHHHHHHHHHhhccccccCCcccCcccCCCCc----chhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHH
Confidence            999999999998888988876544434444332211    1289999999999 99999999999999999888777654

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=6.9e-36  Score=278.56  Aligned_cols=222  Identities=16%  Similarity=0.192  Sum_probs=174.7

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (263)
                      .++++..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||.++|.+++++   .+.+  +|+|++++++
T Consensus        57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~~--sY~~la~~~~  131 (467)
T PTZ00206         57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNIR--TYEGVARVLL  131 (467)
T ss_pred             cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCC--CHHHHHHHHh
Confidence            4678889999999999999999999999999999999999999999999999999999886   3334  9999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc-----cchhhHHHHHHHHHHHHhhcCCCcchhhHHHH
Q 024732          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-----SLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL  180 (263)
Q Consensus       106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-----~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~  180 (263)
                      || |+++++++.+.+.++|+|++|+++++|.++.+++.....+     ...+..+.+++.++++|++++|++++++++|.
T Consensus       132 G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~  210 (467)
T PTZ00206        132 GP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST  210 (467)
T ss_pred             CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence            99 7999999999999999999999999999998876432111     11223344567788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcc---hhh-hhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSK---SAR-IFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       181 ~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      +++.+.++..+++++.++.++.+++.++.++.....+   ..+ ..+++.++|+++||| ||.++||+++|||+|+..
T Consensus       211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~  288 (467)
T PTZ00206        211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVG  288 (467)
T ss_pred             HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchh
Confidence            9998766555555555555543322111111000000   001 125889999999999 999999999999986543

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.98  E-value=2.2e-34  Score=263.89  Aligned_cols=223  Identities=23%  Similarity=0.392  Sum_probs=181.7

Q ss_pred             cCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhC
Q 024732           27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG  106 (263)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G  106 (263)
                      |++|++++++|++|+++|+|+|+||++|+++||++|++++++++.++.||.++|.|++++.+ .+++..+|+|++++++|
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~~~~~~y~~l~~~~~G   79 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NGTGRRSYGDLARRAFG   79 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-ccccccccccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999998632 12345699999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHH
Q 024732          107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLS  186 (263)
Q Consensus       107 ~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~  186 (263)
                      + ++++++++++.+.++|.|++|+++++|.++.+++...++...++..+.++..++++|++++|++++++++|.+|.++.
T Consensus        80 ~-~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~  158 (409)
T PF01490_consen   80 P-KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI  158 (409)
T ss_pred             c-cccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence            9 588999999999999999999999999999998765443456777778888899999999999999999999999866


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCcccccC-cchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732          187 LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM  254 (263)
Q Consensus       187 ~~~~~iiv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~  254 (263)
                      +.++.+++.........+.   .+.+... .+..+..+.+.++|+++||| ||.++||+++|||+|+++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~  225 (409)
T PF01490_consen  159 FYFIVIVVIYIISYGPGEP---SGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFK  225 (409)
T ss_pred             ceeeeeecceeeeeecccc---cccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccc
Confidence            5432222222222211111   1111111 12234568999999999999 9999999999999999855

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.98  E-value=1.6e-31  Score=241.76  Aligned_cols=219  Identities=16%  Similarity=0.181  Sum_probs=180.4

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccc-cccCcccccHHHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC-EKAGRRHIRFRELAADV  104 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~-~~~~~~~~sy~~l~~~~  104 (263)
                      ++..|..++..|+.|.++|+|+|+||+||+++||+.|.+...+++++++|+++.|++|.++. .+.+....+|++.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999884 22222346888888755


Q ss_pred             ----------hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcch
Q 024732          105 ----------LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHS  174 (263)
Q Consensus       105 ----------~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~  174 (263)
                                +|+ |+|.++++++.++++|.|++|++++++++.++.+... +...+.+.|+++..++.+|++++||++.
T Consensus       124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~-~~~~s~~~~i~~~~~~~lll~~Ir~Lk~  201 (449)
T KOG1304|consen  124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS-PGVLSVRLYILIQLPPLLLLNLIRNLKI  201 (449)
T ss_pred             HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC-CCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence                      456 7999999999999999999999999999999987322 3467788889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          175 LRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       175 l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      |+.+|.++.++.++..++++...+.+..+    ..+-+..+    +..+....+|+.+||| |++++.|++++||+|+++
T Consensus       202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~----~~~~~~~~----~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F  273 (449)
T KOG1304|consen  202 LSPFSLFANVFILVGLAIIMYYLVQDLPP----TSDLPAVT----GWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKF  273 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCC----cccccccc----chhhhHHHHHHHHHHhccceEEEehhhcccChhhc
Confidence            99999999987766655555444443321    12222211    2337888899999999 999999999999999986


Q ss_pred             h
Q 024732          254 M  254 (263)
Q Consensus       254 ~  254 (263)
                      -
T Consensus       274 ~  274 (449)
T KOG1304|consen  274 P  274 (449)
T ss_pred             C
Confidence            4

>PLN03074 auxin influx permease; Provisional

Probab=99.97  E-value=6.4e-31  Score=244.83  Aligned_cols=219  Identities=18%  Similarity=0.222  Sum_probs=173.8

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccc----cccCc--cc--ccH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHC----EKAGR--RH--IRF   97 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~----~~~~~--~~--~sy   97 (263)
                      +++++..++.+|+++..+|.|+|+||+||+++||++|++.+++.++++.||+++|.+++.++    ++++.  ++  .+|
T Consensus        43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~  122 (473)
T PLN03074         43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW  122 (473)
T ss_pred             cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999875442    11121  11  378


Q ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhH
Q 024732           98 RELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRH  177 (263)
Q Consensus        98 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~  177 (263)
                      .|+++..+||+ ++.+..+...+++++.|+.|++..++.+..+.      ...+.+.|+++++++.+|++++|+++++++
T Consensus       123 ~e~~~~~~G~~-~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~  195 (473)
T PLN03074        123 FEVLDGLLGPY-WKNVGLAFNCTFLLFGSVIQLIACASNIYYIN------DNLDKRTWTYIFGACCATTVFIPSFHNYRI  195 (473)
T ss_pred             HHHHHHhcChh-HHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC------CCcCCCeEEeehHHHHHHHHHccCHHHHHH
Confidence            99999999994 67888888999999999999999888776652      234556677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhh
Q 024732          178 INLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFS  256 (263)
Q Consensus       178 ~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~  256 (263)
                      +|++|+.++++..+.++..++.++..+   ..+++    ...+....+.++++++||| ||+++|||++|||+|+++.+.
T Consensus       196 ~S~ig~~~tl~~av~i~i~~i~~~~~~---~~~~~----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~  268 (473)
T PLN03074        196 WSFLGLLMTTYTAWYMTIAALSHGQVE---GVKHS----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI  268 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCC----CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccch
Confidence            999999876655444444444443211   11111    1224557888899999999 999999999999999998766


Q ss_pred             ee
Q 024732          257 VF  258 (263)
Q Consensus       257 ~~  258 (263)
                      ..
T Consensus       269 ~~  270 (473)
T PLN03074        269 YL  270 (473)
T ss_pred             HH
Confidence            43

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.94  E-value=7.2e-28  Score=208.32  Aligned_cols=218  Identities=17%  Similarity=0.179  Sum_probs=187.7

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCc---ccccHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGR---RHIRFRELAA  102 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~---~~~sy~~l~~  102 (263)
                      +.+.+.+++.+|..|++-|--+++||+|....|| +++..+++++.+|+||+.+|++|..+..+.|.   .+.+|-++++
T Consensus       114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~  192 (524)
T KOG4303|consen  114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD  192 (524)
T ss_pred             CCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence            4667889999999999999999999999999999 79999999999999999999999887322332   2579999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      .+++++.|.+.+.+.|++.++.+|+.|+++.+|.++.-++..    ..+..-|+++..+.++|.+++|+++-.+.+|+++
T Consensus       193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c  268 (524)
T KOG4303|consen  193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL----SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC  268 (524)
T ss_pred             HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC----CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence            999998887889999999999999999999999999888643    4455668999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM  254 (263)
Q Consensus       183 ~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~  254 (263)
                      .++.+++-.+++.+|.....++....++++.      +..++..++|+++|+| .|..+|++..+|++|+.+.
T Consensus       269 t~sH~viN~i~v~YCLs~~~dW~wskv~Fsi------di~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn  335 (524)
T KOG4303|consen  269 TISHLVINLIMVLYCLSFVSDWSWSKVTFSI------DINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFN  335 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccceeEEEEE------EcccCceEEEEEEEeeeceeeccccccccCChhHhe
Confidence            9999999988888888877665543333322      2336778899999999 9999999999999998643

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.94  E-value=5.9e-27  Score=213.49  Aligned_cols=215  Identities=21%  Similarity=0.307  Sum_probs=172.8

Q ss_pred             cCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhC
Q 024732           27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG  106 (263)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G  106 (263)
                      ++.|.+.+++|+.|+++|+|+|++|+||++.|.+.|+++++++++++.++.+++.+++.+   .+.+  +|++++++.+|
T Consensus         4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~---~~~~--ty~~l~~~~~g   78 (411)
T KOG1305|consen    4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK---SGER--TYSSLGDLIFG   78 (411)
T ss_pred             CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh---cCCC--CHHHHHHHHcC
Confidence            456889999999999999999999999999999999999999999999999999999997   4444  99999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc-ccc----cchhhH-HHHHHHHHHHHhhcCCCcchhhHHHH
Q 024732          107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY-PNG----SLKLYE-FIAMVTVVMIVLSQLPTFHSLRHINL  180 (263)
Q Consensus       107 ~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~-~~~----~~~~~~-~~~i~~~~~lpl~~~r~l~~l~~~S~  180 (263)
                      + .|+....+...+...| |++|++.++|.++.+..... +++    ...++. ++++...+++|+++.|+++++++.|.
T Consensus        79 ~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~  156 (411)
T KOG1305|consen   79 K-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSA  156 (411)
T ss_pred             C-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence            9 4866666777666666 79999999999997655432 111    123333 46778889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       181 ~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ++.++.++++.+++.+.+.....  .+...+..+  +..+.++.+.++|+++||| ||.+..+|++|||+|+.
T Consensus       157 ~s~~~~~~fv~~vv~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~  225 (411)
T KOG1305|consen  157 LSLASVVYFVVLVVYKYFQGPCA--LGRLSYLVP--NLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV  225 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc--cCCcccccC--CcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence            99998887777777666664320  011122221  1112257999999999999 99999999999999976

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.93  E-value=8e-25  Score=201.14  Aligned_cols=218  Identities=17%  Similarity=0.116  Sum_probs=175.9

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      .+.+.+..++++++.++++|+|+|+||++++..|++++++++++.+.+++++.+++.|+..+.++   ++.+|.+++++.
T Consensus         5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~---~~~~~~~~~~~~   81 (415)
T COG0814           5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN---GKASITSLVEDY   81 (415)
T ss_pred             ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcccHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999998432   224899999999


Q ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (263)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~  184 (263)
                      +||+ +++++++...+.+++.+.+|.+..+|.++..++.....+...+..+.+++.+++.++++.++...++..+.+...
T Consensus        82 ~G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~  160 (415)
T COG0814          82 LGKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG  160 (415)
T ss_pred             hCcc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence            9995 779999999999999999999999999999987532222256777788888899999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhcCcCCCCCCCcccccCcc-hhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSK-SARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ...+.+++.+........      +.....+.. ..+..++..++|+++||| ||+++|++++|||+++.
T Consensus       161 ~v~~~~~l~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~  224 (415)
T COG0814         161 KVIYLVLLVVYLIPHWNP------ANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK  224 (415)
T ss_pred             HHHHHHHHHHHHhcccCH------HHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence            655444433332222110      111111111 123447889999999999 99999999999998876

>PRK10483 tryptophan permease; Provisional

Probab=99.77  E-value=3.8e-17  Score=149.01  Aligned_cols=219  Identities=11%  Similarity=0.080  Sum_probs=156.9

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (263)
                      +++++.+++++.+..+.+|+|+|+||.+.++.|+.++++++++++.+..||+.+++|+..+.+    +..++..++|+.+
T Consensus         8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~----~g~~~~tma~~~L   83 (414)
T PRK10483          8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR----IGSSFDTITKDLL   83 (414)
T ss_pred             cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHc
Confidence            467899999999999999999999999999999999999999999999999999999987632    2458999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhc--CCCcchhhHHHHHHH
Q 024732          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ--LPTFHSLRHINLVSL  183 (263)
Q Consensus       106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~--~r~l~~l~~~S~~~~  183 (263)
                      ||+ |+.+..++..+..|+.+++|+--.++.+.+.++..  +.+.+...-.+++.++.-.+.+  .|..+++...-+.+.
T Consensus        84 G~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~  160 (414)
T PRK10483         84 GKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK  160 (414)
T ss_pred             ChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            995 88999999999999999999999999999988642  1123333333444444434443  345566665555555


Q ss_pred             HHHHHHHHHHHHHHHhcCcCC-CCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcch-hhhhhhheee
Q 024732          184 LLSLGYSFLVVGACINAGFSK-NAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTL-LYISMFSVFI  259 (263)
Q Consensus       184 ~~~~~~~~iiv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~-p~~~~~~~~~  259 (263)
                      +.+++..+..    .....+. ..  .+.+.  ...........++|++++|| +|+++|++++.+++ +++-++++.+
T Consensus       161 i~~f~~~~~~----l~~~i~~~~L--~~~~~--~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~i  231 (414)
T PRK10483        161 VITFFLTFGS----LLGHVQPATL--FNVAE--SNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVY  231 (414)
T ss_pred             HHHHHHHHHH----HHhhcCHHHH--hcccc--ccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHH
Confidence            4333222111    1111110 00  00000  01112235778999999999 99999999999884 5666665543

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.74  E-value=2.7e-16  Score=143.35  Aligned_cols=220  Identities=12%  Similarity=0.053  Sum_probs=151.0

Q ss_pred             cCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhC
Q 024732           27 SKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLG  106 (263)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G  106 (263)
                      ++.+..++++.+..+.+|+|+|+||.+-++.|+.++++++++++++..||+.+++|+..+.+    +..++..++|+.+|
T Consensus         7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~----~g~~l~tma~~~LG   82 (415)
T PRK09664          7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP----VGSSFNTITKDLIG   82 (415)
T ss_pred             hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHcC
Confidence            44578889999999999999999999999999999999999999999999999999987642    24589999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcC--CCcchhhHHHHHHHH
Q 024732          107 SGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSLL  184 (263)
Q Consensus       107 ~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~--r~l~~l~~~S~~~~~  184 (263)
                      |+ |+.+..++..+..|+.+++|+--.++.+.+.++... +.+.+...-.+++.++.-++.+.  |..+++...-+.+.+
T Consensus        83 ~~-g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~i  160 (415)
T PRK09664         83 NT-WNIISGITVAFVLYILTYAYISANGAIISETISMNL-GYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI  160 (415)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence            95 889999999999999999999999999999885411 11223332233444444344333  445555555554444


Q ss_pred             HHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchh-hhhhhhe
Q 024732          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLL-YISMFSV  257 (263)
Q Consensus       185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p-~~~~~~~  257 (263)
                      .+++..+..    .....+... -.+.+...........+..++|++++|| +|+++|++.+.+++. ++-++++
T Consensus       161 i~f~~~~~~----l~~~i~~~~-L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaI  230 (415)
T PRK09664        161 ISFVIVFGS----FFFQVDYSI-LRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSV  230 (415)
T ss_pred             HHHHHHHHH----HhhcccHHH-HhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHH
Confidence            332221111    111110000 0000000000001224778999999999 999999999998844 4444444

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.73  E-value=6.6e-16  Score=141.31  Aligned_cols=218  Identities=12%  Similarity=0.109  Sum_probs=150.2

Q ss_pred             CchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCc
Q 024732           28 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGS  107 (263)
Q Consensus        28 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~  107 (263)
                      +.+.+++++.+..+.+|+|+|+||.+.+..|.+++++.+++.+.++++|..++.|...+.+    +..+|.+++++.+||
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~----~~~~~~~~a~~~lG~   77 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP----EGSSLTSMAEKYLGK   77 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHhCh
Confidence            4577899999999999999999999999999999999999999999999999999987632    245999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcC--CCcchhhHHHHHHHHH
Q 024732          108 GWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSLLL  185 (263)
Q Consensus       108 ~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~--r~l~~l~~~S~~~~~~  185 (263)
                      + ++++..+...+..++.+++|..-.++.+.+.+..... .+.+...-.+++.++.-.+...  |-+++....-....+.
T Consensus        78 ~-g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~  155 (394)
T PF03222_consen   78 K-GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-TDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMII  155 (394)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            5 7899999999999999999999999999998865431 1223332223333332222222  1233333332333322


Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcc-hhhhhhhheee
Q 024732          186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTST-LLYISMFSVFI  259 (263)
Q Consensus       186 ~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~-~p~~~~~~~~~  259 (263)
                      ++...+   ...+.+ .  +.  +......+...+....+.++|+.++|| .|+++|++.+.++ |+++-++++++
T Consensus       156 ~~~~l~---~~~~p~-~--~~--~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~  223 (394)
T PF03222_consen  156 SFIILV---VYLIPH-W--NP--SNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIII  223 (394)
T ss_pred             HHHHHH---HHHhhh-c--CH--HHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHH
Confidence            221111   111111 1  10  000001111223446889999999999 9999999999999 66666666654

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.68  E-value=4.5e-15  Score=135.66  Aligned_cols=214  Identities=18%  Similarity=0.156  Sum_probs=146.1

Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732           29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (263)
Q Consensus        29 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (263)
                      ++..++++.+..+.+|+|+|+||.+.+..|.+++++++++++.+..|+++++.|+..+.+    +..++.+++|+.+||+
T Consensus         3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~----~~~~~~~~a~~~LG~~   78 (403)
T PRK15132          3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP----ADTGLGTLAKRYLGRY   78 (403)
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCCCHHHHHHHHhChH
Confidence            367889999999999999999999999999999999999999999999999999766521    2358999999999995


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcC--CCcchhhHHHHHHHHHH
Q 024732          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTFHSLRHINLVSLLLS  186 (263)
Q Consensus       109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~--r~l~~l~~~S~~~~~~~  186 (263)
                       |+++..+...+..|..+.+|..-.++.+.+.+..+..+ +.+.....+++.++.-.+.+.  |-.++....-..+.+..
T Consensus        79 -g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~  156 (403)
T PRK15132         79 -GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIF  156 (403)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence             78999999999999999999999999988887543221 222223333443333223332  22333333333333322


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcc-hhhhhhhheee
Q 024732          187 LGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTST-LLYISMFSVFI  259 (263)
Q Consensus       187 ~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~-~p~~~~~~~~~  259 (263)
                      +..  .  ........+     .+ .+...+..+ ..+..++|++++|| +|+++|++.+.++ ++++.++++++
T Consensus       157 ~~~--~--~~~l~p~~~-----~~-~L~~~~~~~-~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~  220 (403)
T PRK15132        157 LVV--M--LALMMPHIH-----KV-NLLTLPLQQ-GLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFII  220 (403)
T ss_pred             HHH--H--HHHHHHhcC-----HH-HHhcCCccc-cHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHH
Confidence            211  1  111111110     00 011001000 13778899999999 9999999999988 45666666554

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.64  E-value=7.2e-15  Score=134.03  Aligned_cols=212  Identities=13%  Similarity=0.086  Sum_probs=146.2

Q ss_pred             HHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHH
Q 024732           35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV  114 (263)
Q Consensus        35 ~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~  114 (263)
                      +..+.++++|+|++++|.++++.|+..+.+.+++.+.++.++..++.|...+.|+    ..+|.+.+++.+|| |++.++
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~----~~~~~~~~~~~~G~-~~g~~~   77 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG----GASFNTIAKDLLGK-TGNIIA   77 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCHHHHHHHHhCH-HHHHHH
Confidence            4456789999999999999999999999999999999999999999999876432    23899999999999 688999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 024732          115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV  194 (263)
Q Consensus       115 ~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv  194 (263)
                      .+...+.++..+.+|.+..++.+..+++.... ...+.....+++.+++.++. .+..+...+++.+.+...+...++.+
T Consensus        78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~i  155 (381)
T TIGR00837        78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFG-FPWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVF  155 (381)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887754211 12233333333444444444 34556667766665554333322222


Q ss_pred             HHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcc-hhhhhhhhee
Q 024732          195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTST-LLYISMFSVF  258 (263)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~-~p~~~~~~~~  258 (263)
                      .....+...++.    .+. +.+.....+.+.+++...++| +|++++++.+|++ ++++-.+.+.
T Consensus       156 i~~~~~~~~~~~----~~~-~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii  216 (381)
T TIGR00837       156 SGLLPHVKGDLL----LDV-ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSIL  216 (381)
T ss_pred             HHHHhhccHHHH----hcC-ccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHH
Confidence            222222110000    000 000112336788899999999 9999999999997 4444444443

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.52  E-value=2.5e-12  Score=117.82  Aligned_cols=205  Identities=12%  Similarity=0.036  Sum_probs=135.5

Q ss_pred             HHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHHH
Q 024732           36 FHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVI  115 (263)
Q Consensus        36 ~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~  115 (263)
                      +.+..+.+|+|+|+||......|.++.++++++.+.+++|+.+.|.|...+.+   ++..+|.+++++.+||+ ++.+..
T Consensus        26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~---~~~~~i~~v~~~~lG~~-g~~i~~  101 (443)
T PRK13629         26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS---NPSGNITETVEEHFGKT-GGVVIT  101 (443)
T ss_pred             HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CCCCCHHHHHHHHcChh-HHHHHH
Confidence            78899999999999999999999999999999999999999999999877631   23458999999999997 568899


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCC--cchhhHHHHHHHHHHHHHHHHH
Q 024732          116 FIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPT--FHSLRHINLVSLLLSLGYSFLV  193 (263)
Q Consensus       116 ~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~--l~~l~~~S~~~~~~~~~~~~ii  193 (263)
                      ++..+..+..+.+|...+.+.+...+.++....+.++....+++.+++..+....+  +.++...-....+.+++...+.
T Consensus       102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~  181 (443)
T PRK13629        102 FLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLS  181 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888887754332111133454444455544444444333  3333333333333222211111


Q ss_pred             HHHHHhcCcCCCCCC-Ccccc---cCcch-hhhhhHHHHHHHHHHHh-ccCchHHhHHhcchh
Q 024732          194 VGACINAGFSKNAPP-KDYSL---ESSKS-ARIFSAFTSISIIAAIF-GNGILPEIQVTSTLL  250 (263)
Q Consensus       194 v~~~~~~~~~~~~~~-~~~~~---~~~~~-~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p  250 (263)
                          ...  +++.+. .+.+.   ..... ........++|+++||| +|+.+|+....+|+.
T Consensus       182 ----LiP--~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~  238 (443)
T PRK13629        182 ----LIP--YWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREE  238 (443)
T ss_pred             ----HHH--HcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence                111  111000 00010   00000 01125778899999999 999999998885443

>TIGR00814 stp serine transporter

Probab=99.38  E-value=7.6e-11  Score=108.04  Aligned_cols=200  Identities=10%  Similarity=0.032  Sum_probs=128.2

Q ss_pred             HHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHH
Q 024732           35 GFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFV  114 (263)
Q Consensus        35 ~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~  114 (263)
                      .+.+..+++|+|+|++|....+.||+..++..++...+++++.+++.|.....+.+   ..++.|++++.|||+ ++.+.
T Consensus         9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p---~~~i~~~~~~~fGk~-~G~ii   84 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP---CEDITEVVEEHFGKN-WGILI   84 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHcCHH-HHHHH
Confidence            46788999999999999999999999999989988999999999999985542211   348999999999995 66888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHH
Q 024732          115 IFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVV  194 (263)
Q Consensus       115 ~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv  194 (263)
                      .+...+..+..+.+|....++.+...+.....- +...+....+..+..+-.......+.+.+++-+-+...+....++.
T Consensus        85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~-~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~  163 (397)
T TIGR00814        85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGT-APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS  163 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888887776542110 1111211122222221222333455555555443321111111111


Q ss_pred             HHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhH
Q 024732          195 GACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQ  244 (263)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~  244 (263)
                      ...+-+ .+.    +.....+.......+...++++.++|| +|+++|+..
T Consensus       164 ~~lip~-~~~----~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~  209 (397)
T TIGR00814       164 LYLIPH-WNG----ANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFA  209 (397)
T ss_pred             HHHHHH-cCH----HHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHH
Confidence            111211 100    000000101112346889999999999 999999997

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10655 potE putrescine transporter; Provisional

Probab=98.94  E-value=2.5e-07  Score=86.04  Aligned_cols=214  Identities=10%  Similarity=-0.032  Sum_probs=119.1

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (263)
                      +|+-+.++.+...+.+++|+|++.+|..+++.|- .+++..++.+++.......+.|.....|+.|    ....-+++.+
T Consensus         5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~~~   79 (438)
T PRK10655          5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEYAF   79 (438)
T ss_pred             cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHHHc
Confidence            5678889999999999999999999999988886 5677777777777777777788766555444    2344456789


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHH-HHHHhhcCCCcchhhHHHHHHHH
Q 024732          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTV-VMIVLSQLPTFHSLRHINLVSLL  184 (263)
Q Consensus       106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~lpl~~~r~l~~l~~~S~~~~~  184 (263)
                      ||.+| .++.....+........+-+...+.+..+++..  .+  ....+.+...+ ..+-..-.+..+...++..+...
T Consensus        80 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~--~~--~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~  154 (438)
T PRK10655         80 GKSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGAT--LS--PVQICLATIGVLWLCTVANFGGARITGQISSVTVW  154 (438)
T ss_pred             CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cc--hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            99655 666666554444444444333444444444310  11  11112111111 11111222333444444333332


Q ss_pred             HHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ..+...++++.........++   .+....+.+.........++....|+| |-.....+-+|+|||++
T Consensus       155 ~~l~~l~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r  220 (438)
T PRK10655        155 GVIIPVVGLSIIGWFWFSPSL---YVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPER  220 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCccc---ccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc
Confidence            222212122222222111111   000111111111235667788899999 99999999999999985

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.88  E-value=3.8e-07  Score=84.84  Aligned_cols=214  Identities=10%  Similarity=-0.013  Sum_probs=117.5

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (263)
                      +|+-+.++.+...+.+++|+|++.+|...++.|-. .++..++.++...-.+....|.....|+.|.    .-+-+++ +
T Consensus         4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG----~y~y~~~-~   77 (435)
T PRK10435          4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGG----PIAYAGE-I   77 (435)
T ss_pred             CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----hhHHHHH-H
Confidence            57788899999999999999999999999988863 5556666666667777777777666555442    2223355 6


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 024732          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (263)
Q Consensus       106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~  185 (263)
                      |+.+| ..+..............+.+...+.+..+++...  +......+.+ ..+..+-+.-.+..+....+..+....
T Consensus        78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~--~~~~~~~~~~-~i~~~~~~ln~~gvk~~~~i~~i~~~~  153 (435)
T PRK10435         78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN--DPIPAGIACI-AIVWVFTFVNMLGGTWVSRLTTIGLVL  153 (435)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--ChHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            88666 6666654443433444444445555555543221  1111111111 111111122233334444443333322


Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          186 SLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       186 ~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      .+...+..+.....+..++.. ..+++.  ....+..++..++....|+| |-......-+|+|||++
T Consensus       154 ~li~~~~~~i~g~~~~~~~~~-~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r  218 (435)
T PRK10435        154 VLIPVVGTAIVGWHWFDAATY-AANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR  218 (435)
T ss_pred             HHHHHHHHHHHHHHHcCHHhh-cccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc
Confidence            221111111111111100000 011111  11122347888899999999 99999999999999964

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.85  E-value=6.8e-07  Score=83.48  Aligned_cols=214  Identities=14%  Similarity=0.128  Sum_probs=127.2

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++.....+.+++|+|++.+| .+.+..|- .+.+..++.+++....+..+.|.....|+.|    .+.+.+++
T Consensus        10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G----g~~~~~~~   84 (452)
T TIGR01773        10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG----SFSTYADD   84 (452)
T ss_pred             HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence            467888999999999999999999999 77888886 4677778888888888888888877655443    45667888


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~  183 (263)
                      .+||.+| .++.....+.....+.......+..+...++    +  .....+.++..++.. ..-.+..+...++.....
T Consensus        85 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~~~~~~~~~~~~-~~n~~gv~~~~~~~~~~~  156 (452)
T TIGR01773        85 AIGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFP----D--IPLWLFSLILTIVLT-LTNLYSVKSYGEFEFWFA  156 (452)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CcHHHHHHHHHHHHH-HHHHHhcchhhHHHHHHH
Confidence            9999655 7777776666655666666666666665542    1  122211111111111 112223344444433322


Q ss_pred             HHHHHHHHHHHHHH---HhcCcCCCCCCCcc-cccC---cchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          184 LLSLGYSFLVVGAC---INAGFSKNAPPKDY-SLES---SKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       184 ~~~~~~~~iiv~~~---~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ..-+...++.++..   .....+... ..++ +..+   .......+++.++....|+| |......+-+|+|||++
T Consensus       157 ~~ki~~l~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r  232 (452)
T TIGR01773       157 LIKVIAIIAFIILGAVAIFGFAPGSE-VSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK  232 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh
Confidence            21111111111111   111111100 0001 0111   00112235888899999999 99999999999999975

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=98.83  E-value=6.3e-08  Score=79.44  Aligned_cols=212  Identities=17%  Similarity=0.179  Sum_probs=132.8

Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccc-----c---------cc--------
Q 024732           32 WHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-----C---------EK--------   89 (263)
Q Consensus        32 ~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~-----~---------~~--------   89 (263)
                      .-...-++|-++|+|-|+||-+|+..||+.++.+|++.+++++-+..+.+++...     |         ++        
T Consensus        15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas   94 (319)
T KOG3832|consen   15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS   94 (319)
T ss_pred             hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence            3456678899999999999999999999999999999999999988887765321     0         00        


Q ss_pred             ------------cCc------------------ccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024732           90 ------------AGR------------------RHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQI  139 (263)
Q Consensus        90 ------------~~~------------------~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~  139 (263)
                                  .++                  ++...++++...|.+ .|..+..+++++++||....|--.+-.+..+
T Consensus        95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~  173 (319)
T KOG3832|consen   95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMN  173 (319)
T ss_pred             CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhh
Confidence                        000                  012366777788888 6888889999999999999999888777776


Q ss_pred             hhcccc----------ccc--------c-ch----hhHHHHHHHHHH-HHhhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 024732          140 MYSDLY----------PNG--------S-LK----LYEFIAMVTVVM-IVLSQLPTFHSLRHINLVSLLLSLGYSFLVVG  195 (263)
Q Consensus       140 ~~~~~~----------~~~--------~-~~----~~~~~~i~~~~~-lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~  195 (263)
                      +-+...          +++        + ++    .+.++.|+.+++ +|+.+. ++++-+++-++..++-...-...+.
T Consensus       174 itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~  252 (319)
T KOG3832|consen  174 ITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGIS  252 (319)
T ss_pred             hhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhh
Confidence            654321          100        1 11    244566665443 476655 6777777777666543322111111


Q ss_pred             HHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhh
Q 024732          196 ACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLY  251 (263)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~  251 (263)
                      ..-.+.-      +|-....++....-++-.-++...|+| +|...|.....|+...
T Consensus       253 l~tmqae------edaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~  303 (319)
T KOG3832|consen  253 LATMQAE------EDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD  303 (319)
T ss_pred             hhhhhhc------ccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence            1111111      111111111111112222357889999 9999998777666443

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.81  E-value=9e-07  Score=83.20  Aligned_cols=227  Identities=10%  Similarity=-0.020  Sum_probs=124.8

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhC-hhHHHHHHHHHHHHHHHHHHHHHHccccccc-cCcccccHHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG-WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEK-AGRRHIRFRELAAD  103 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G-~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~-~~~~~~sy~~l~~~  103 (263)
                      +|+-+.+++....+++++|+|++.+|....+.| -...++..++.++..........|.....|+ .|.    .-+-.++
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG----~y~y~~~   81 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGG----IYAYARE   81 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC----hhhhHHh
Confidence            567899999999999999999999998877655 2223444566666666667777777766554 342    3335588


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~  183 (263)
                      .+||.+| .++.....+........+.....+.+..+++.+.++.......+ .+.....+-..-.+..+...++..+..
T Consensus        82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ln~~Gi~~~~~i~~~~~  159 (473)
T TIGR00905        82 GFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILG-ASVLLWVFTFLVLRGVRQAAFINTITT  159 (473)
T ss_pred             HcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHH-HHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            8999655 76777665544444555555555555555542211111111111 111111222234445565555555544


Q ss_pred             HHHHHHHHHHHHHHHhcCcCCCCCCCccccc-Ccc-hhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhheee
Q 024732          184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLE-SSK-SARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVFI  259 (263)
Q Consensus       184 ~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~~  259 (263)
                      ...+...+++++..+.....++. ..+.... .+. ......+..++....|+| |-......-+|+||+++--+++++
T Consensus       160 ~~~l~~l~~~ii~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~  237 (473)
T TIGR00905       160 IAKLIPLFLFIIIGWFWFKLDLF-TADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVL  237 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhc-ccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHH
Confidence            33222222222222211111110 0011000 001 112235677888899999 999999999999995544444443

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11021 putative transporter; Provisional

Probab=98.81  E-value=9.3e-07  Score=81.53  Aligned_cols=205  Identities=17%  Similarity=0.142  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732           30 EWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (263)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (263)
                      ++|+++...+++++|+|++.+|- +.+..|- ..++..++.+++.......+.|.....|+.|    ....-+++.+||+
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~   76 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPR   76 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCch
Confidence            56889999999999999999995 4555564 5566777777777777888888877765554    3344567789997


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHH
Q 024732          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG  188 (263)
Q Consensus       109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~  188 (263)
                      +| .+..............+........+...++.    ....... ..+....++-+.-.+..+...++..+..+   .
T Consensus        77 ~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~---~  147 (410)
T PRK11021         77 LG-RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW----SSWQLLL-AELLTLALLWLLNLRGASSSANLQTVIAL---L  147 (410)
T ss_pred             hH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC----CCchHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---H
Confidence            66 55565544322222222333334444444321    1111111 11111222222333444444444443222   1


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          189 YSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       189 ~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ...++... ...+..+   ..+++..+....+..+...++....|+| |.......-+|+|||++
T Consensus       148 ~~~i~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k  208 (410)
T PRK11021        148 IVALVVAI-WWAGDIK---PADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER  208 (410)
T ss_pred             HHHHHHHH-HHHcCCc---hhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc
Confidence            11111111 1111111   1112111111123346788899999999 99999999999999975

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.79  E-value=2.1e-06  Score=80.70  Aligned_cols=217  Identities=11%  Similarity=0.099  Sum_probs=117.2

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++.....+..++|+|+...|.. .+..|-...++..++.+++......-+.|.....|+.|    .+-.-+++
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~~   87 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAAR   87 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence            46888999999999999999999988854 56778544466677777777777777788777765544    34456777


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~  183 (263)
                      .+|+.+| .++.....+.....+.......+..+...+    ++  .....+.++..++.. +.-.+..+...+......
T Consensus        88 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----p~--~~~~~~~~~~~~~~~-~in~~gvk~~~~~~~~~~  159 (471)
T PRK11387         88 YLGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYWF----PQ--VPVWPWCLLFCALIF-GLNVVSTRFFAEGEFWFS  159 (471)
T ss_pred             hcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----Cc--CcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Confidence            8999655 666666655544444333333333333322    21  122222222222222 222233333333332221


Q ss_pred             HHHHHHHHHHHHHHH--hcC---cCCCCCC---CcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          184 LLSLGYSFLVVGACI--NAG---FSKNAPP---KDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       184 ~~~~~~~~iiv~~~~--~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      ..-+..+++++...+  ..+   ..++.+.   .+++..+.........+.++....|+| |-......-+|+|||++.
T Consensus       160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~  238 (471)
T PRK11387        160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKV  238 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhH
Confidence            111111111111111  100   0000000   011111100011235677778889999 999999999999999863

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.78  E-value=2e-06  Score=80.15  Aligned_cols=214  Identities=11%  Similarity=0.003  Sum_probs=114.8

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      .+|+-+.++.+...++.++|+|++.+|...++.|- ..+...++.++...-....+.|.....|+.|.. ..|   +++.
T Consensus         6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~-y~~---~~~~   80 (445)
T PRK10644          6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGS-YAY---ARRC   80 (445)
T ss_pred             cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCh-hHH---HHHH
Confidence            46788899999999999999999999999888774 334445555555666666677776666655432 233   7778


Q ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhh--cCCCcchhhHHHHHH
Q 024732          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSLRHINLVS  182 (263)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~--~~r~l~~l~~~S~~~  182 (263)
                      +||.+| .++.....+..............+....+++...  ..  ... .++..++++.+.  -.+..+...++..+.
T Consensus        81 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~-~~~~~~~~~~~~~ln~~gvk~~~~i~~i~  154 (445)
T PRK10644         81 FGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK--DP--LVL-TITCVVVLWIFVLLNIVGPKMITRVQAVA  154 (445)
T ss_pred             cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--Cc--HHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            999655 6666555544433333333333344444433211  11  111 111111211122  223334444444433


Q ss_pred             HHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       183 ~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ....+..+++++...+.....+.. ..+++.  .+......+..++....|+| |-......-+|+|||++
T Consensus       155 ~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r  222 (445)
T PRK10644        155 TVLALIPIVGIAVFGWFWFRGETY-MAAWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR  222 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHhCchhc-cCCccc--cccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc
Confidence            322222211111111111110000 001111  11112235667788899999 99999999999999975

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.77  E-value=5.1e-07  Score=81.71  Aligned_cols=212  Identities=11%  Similarity=0.113  Sum_probs=123.4

Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732           29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (263)
Q Consensus        29 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (263)
                      -|.++..+.+..+++|+|++.+|...++.+---+.+..++.++.......++.+...++|  + +  +..+..++.+||.
T Consensus         3 is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p--~-~--~~~~~~~~~~Gk~   77 (359)
T TIGR00912         3 ISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP--E-K--NFSEILSKYLGKI   77 (359)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC--C-C--CHHHHHHHHhhHH
Confidence            466889999999999999999999876644334556667777788888888888877642  2 2  7899999999994


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHH
Q 024732          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG  188 (263)
Q Consensus       109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~  188 (263)
                       ...++.+......+..+.......++.+...+.   ++  .+... ..+..++..-....+.++...+++.+-....+.
T Consensus        78 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~--tp~~~-~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~  150 (359)
T TIGR00912        78 -LGRLLSILFILYFFLIAAYLIRIFADFIKTYLL---PR--TPIIV-IIILIIIVSIYIVRKGIEVLLRTAEILLIIFLI  150 (359)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC--CCHHH-HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence             546666666555555554445555565544321   11  12211 122222222233445666666666555432222


Q ss_pred             H-HHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHH-HHHHHHh-ccCchHHhHHhcchhhhhhhheee
Q 024732          189 Y-SFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSI-SIIAAIF-GNGILPEIQVTSTLLYISMFSVFI  259 (263)
Q Consensus       189 ~-~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~~  259 (263)
                      . ..++......+ .+.   +.-.+..+.   +..+...+. ....++| |...+....+++|+|++.++...+
T Consensus       151 ~~~~il~~~~~~~-~~~---~~l~P~~~~---g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~  217 (359)
T TIGR00912       151 LFILVLILLAPKL-GNI---KNLLPVLEN---GLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIK  217 (359)
T ss_pred             HHHHHHHHHhccc-ccH---HHccCcccc---CcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            2 11111111111 000   000011111   122444433 4778899 888888889999999887776543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.77  E-value=2.3e-06  Score=80.43  Aligned_cols=226  Identities=15%  Similarity=0.150  Sum_probs=122.1

Q ss_pred             ccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcc
Q 024732           15 RDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRR   93 (263)
Q Consensus        15 ~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~   93 (263)
                      .||++.+....+|+-+.++.....+.+++|+|++-.| .++++.|. ..++..++.+++......-+.|.....+    +
T Consensus         8 ~~~~~~~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~----~   82 (469)
T PRK11049          8 ADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNL----E   82 (469)
T ss_pred             hhhccccchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Confidence            3333333334678889999999999999999999987 58888887 4455666666666666666666543211    1


Q ss_pred             cccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcc
Q 024732           94 HIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFH  173 (263)
Q Consensus        94 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~  173 (263)
                      ..++.+.+++.+|+.+| .++.....+.............+..+...++    +  .....+..+...+...+. .+..+
T Consensus        83 ~~~~~~ya~~~~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p----~--~~~~~~~~~~~~~~~~iN-~~g~~  154 (469)
T PRK11049         83 YKSFSDFASDLLGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFP----D--LSDWVASLAVVLLLLSLN-LATVK  154 (469)
T ss_pred             CCcHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C--CcHHHHHHHHHHHHHHHH-HHhHH
Confidence            22566789999999644 7777777665543444444455555544432    1  112221122222222122 22333


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH--h-cCcCCCCCC-Ccc-cccCc-c--hhhhhhHHHHHHHHHHHh-ccCchHHhH
Q 024732          174 SLRHINLVSLLLSLGYSFLVVGACI--N-AGFSKNAPP-KDY-SLESS-K--SARIFSAFTSISIIAAIF-GNGILPEIQ  244 (263)
Q Consensus       174 ~l~~~S~~~~~~~~~~~~iiv~~~~--~-~~~~~~~~~-~~~-~~~~~-~--~~~~~~~~~a~g~~~faf-~h~~i~~I~  244 (263)
                      ...++..+....-+...+++++..+  . .+......+ ..+ +..+. +  ......++.++....|+| |-......-
T Consensus       155 ~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a  234 (469)
T PRK11049        155 MFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTA  234 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence            4444433322211111111111111  1 111100000 001 00110 0  012235788899999999 999999999


Q ss_pred             Hhcchhhhh
Q 024732          245 VTSTLLYIS  253 (263)
Q Consensus       245 ~~M~~p~~~  253 (263)
                      +|+|||++.
T Consensus       235 ~E~knP~r~  243 (469)
T PRK11049        235 AETKDPEKS  243 (469)
T ss_pred             HHhcCHhhH
Confidence            999999863

>TIGR00909 2A0306 amino acid transporter

Probab=98.76  E-value=9.6e-07  Score=81.78  Aligned_cols=219  Identities=10%  Similarity=0.035  Sum_probs=129.1

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      +|+-+.++.+...+++++|+|++.+|.... ..|. ...+..++.++.....+..+.|...+.|+.|    ..-+-.++.
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~   76 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG----SPYTYAYEA   76 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----cceeeHHHH
Confidence            477888999999999999999999996554 4454 3455566667777777888888877655433    233445668


Q ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc---cccc------chhhHHHHHHHHHHHHhhcCCCcchh
Q 024732          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLY---PNGS------LKLYEFIAMVTVVMIVLSQLPTFHSL  175 (263)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~---~~~~------~~~~~~~~i~~~~~lpl~~~r~l~~l  175 (263)
                      +||+.| .++.....+.....+..+....++.+..+++...   ++..      .....+..+...+++-+.-.+..+..
T Consensus        77 ~G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~  155 (429)
T TIGR00909        77 MGELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES  155 (429)
T ss_pred             hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence            999644 7777777666666667777777777766654211   1100      00000111222222223334455666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh-
Q 024732          176 RHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS-  253 (263)
Q Consensus       176 ~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~-  253 (263)
                      .+++.+.....+...++++.....+...     .+++..  ..........++...+|+| |.......-+|+|||++. 
T Consensus       156 ~~~~~v~~~~~i~~l~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~i  228 (429)
T TIGR00909       156 GKVNDILVVLKVAALLLFAALGAIHFAS-----NNYTPF--MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDI  228 (429)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhCcH-----HhcCCC--CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccc
Confidence            6666555443333322222222222111     111110  0112335778889999999 999999999999999653 


Q ss_pred             hhhe
Q 024732          254 MFSV  257 (263)
Q Consensus       254 ~~~~  257 (263)
                      .+++
T Consensus       229 p~ai  232 (429)
T TIGR00909       229 PKAI  232 (429)
T ss_pred             cHHH
Confidence            4444

>PRK10249 phenylalanine transporter; Provisional

Probab=98.75  E-value=2.9e-06  Score=79.49  Aligned_cols=216  Identities=13%  Similarity=0.075  Sum_probs=123.1

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++.....+..++|+|+...| .+.++.|- ..++..++.+++....+.-+.|.....|..|    .+.+-+++
T Consensus        19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G----g~~~y~~~   93 (458)
T PRK10249         19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG----SFAHFAYK   93 (458)
T ss_pred             hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence            567788899999999999999999999 45556675 4667777788888888888888887765544    55667889


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~  183 (263)
                      .+|+.+| .++.....+.............+..++.+++    +  .....+..+...+.. ..-.+..+..+++.....
T Consensus        94 ~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~~~l~~-~lN~~gv~~~~~i~~~~~  165 (458)
T PRK10249         94 YWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFP----D--VPTWIWAAAFFIIIN-AVNLVNVRLYGETEFWFA  165 (458)
T ss_pred             HhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----c--CcHHHHHHHHHHHHH-HHHHhcchhhhhHHHHHH
Confidence            9999655 7777766555444444444445555544432    1  122222222222222 222234444444332222


Q ss_pred             HHHHHHHHH--HHHHHH-hcCcCCCCCCCcccccCc--chhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          184 LLSLGYSFL--VVGACI-NAGFSKNAPPKDYSLESS--KSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       184 ~~~~~~~~i--iv~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      ..-+..+++  ++.... ..+........+....+.  ....+.++..++....|+| |-......-+|+|||++.
T Consensus       166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~  241 (458)
T PRK10249        166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKS  241 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhH
Confidence            111111111  111111 111110000001001000  0112235778899999999 999999999999999873

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.69  E-value=2.2e-06  Score=82.19  Aligned_cols=222  Identities=10%  Similarity=0.041  Sum_probs=123.6

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF--RGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      .+|+-+.++....-+..++|+|+..+|-..  ...|-. ..+..++.++.+...+....|.....|+.|.. ..|.   +
T Consensus        26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~-Y~y~---~  100 (557)
T TIGR00906        26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSA-YLYS---Y  100 (557)
T ss_pred             hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-eeeH---H
Confidence            578889999999999999999999999643  347753 45566677777777788888877766655532 3444   3


Q ss_pred             HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc----cc------ccccchhh-HHHHHHHHHHHHhhcCCC
Q 024732          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD----LY------PNGSLKLY-EFIAMVTVVMIVLSQLPT  171 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~----~~------~~~~~~~~-~~~~i~~~~~lpl~~~r~  171 (263)
                      +.+|+.++ +++.....+.....+.......++.+..++..    ..      ........ ....+..++++-+...+.
T Consensus       101 ~~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G  179 (557)
T TIGR00906       101 VTVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG  179 (557)
T ss_pred             HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence            46898544 77777666555444444333344444433321    00      00011111 111111122222334456


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcc-cccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcch
Q 024732          172 FHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTL  249 (263)
Q Consensus       172 l~~l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~  249 (263)
                      .+..+++..+.....+...+++++........++...... ...+.......+++.+.....|+| |-..+...-+|+||
T Consensus       180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~kn  259 (557)
T TIGR00906       180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN  259 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccC
Confidence            6666666655444333332233333333221111100000 000000112236788889999999 99999999999999


Q ss_pred             hhh
Q 024732          250 LYI  252 (263)
Q Consensus       250 p~~  252 (263)
                      |++
T Consensus       260 P~r  262 (557)
T TIGR00906       260 PQR  262 (557)
T ss_pred             ccc
Confidence            986

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.68  E-value=6.6e-06  Score=77.03  Aligned_cols=215  Identities=12%  Similarity=0.106  Sum_probs=122.8

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++..+.-+++++|+|++-.| .+.++.|- ..++..++.+++.+..+.-+.|.....|..|    .+.+-+++
T Consensus        10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG----g~y~~~~~   84 (456)
T PRK10238         10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG----SFSHFAYK   84 (456)
T ss_pred             hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence            578889999999999999999999888 45556664 4556667777777777777778776655444    45555677


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~  183 (263)
                      .+||. ..+++.....+.....+.......++.++...+    +  .....+..+...+..-+.. ...+.+..+..+..
T Consensus        85 ~~g~~-~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p----~--~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~  156 (456)
T PRK10238         85 YWGSF-AGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP----E--IPTWVSAAVFFVVINAINL-TNVKVFGEMEFWFA  156 (456)
T ss_pred             HcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----c--CcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence            89995 558888877777666666666666776655432    1  2222222222222222222 23333444443332


Q ss_pred             HHHHHHHHHHHH--HH-HhcCcCCCCCC-Cc-ccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          184 LLSLGYSFLVVG--AC-INAGFSKNAPP-KD-YSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       184 ~~~~~~~~iiv~--~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ...+...+++++  .. +..+....... .+ .+..+........+..+++...|+| |-......-+|+|||++
T Consensus       157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r  231 (456)
T PRK10238        157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ  231 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh
Confidence            222211111111  11 11111110000 00 0101110111235667788899999 99999999999999976

>PRK10746 putative transport protein YifK; Provisional

Probab=98.65  E-value=1.2e-05  Score=75.54  Aligned_cols=215  Identities=14%  Similarity=0.169  Sum_probs=123.4

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++..+.-+.+++|+|++-.| .+.+..|- ...+..++.+++.+..+.-+.|.....|+.|    .+.+-+++
T Consensus         8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG----g~~~y~~~   82 (461)
T PRK10746          8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG----SFAVYAHR   82 (461)
T ss_pred             HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHH
Confidence            467788899999999999999999988 66777786 4556667777777778888888877655443    57777888


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH--
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV--  181 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~--  181 (263)
                      .+|+.+| .++.....+.....+.......+..++..++.      .....+..+..+++.-+. .+..+....+...  
T Consensus        83 ~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~------~~~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~~  154 (461)
T PRK10746         83 YMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE------MAQWIPALIAVALVALAN-LAAVRLYGEIEFWFA  154 (461)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------CchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence            9999766 77777666655555555555566665554321      122222222222222121 2222333332221  


Q ss_pred             --HHHHHHHHHHHHHHHHHhcCcCCCCCCCccc-cc---CcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          182 --SLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       182 --~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                        .+...+..+++.+.. +..+...+.+..... ..   +.......++..++....|+| |-..+...-+|+|||++.
T Consensus       155 ~~ki~~i~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~  232 (461)
T PRK10746        155 MIKVTTIIVMIVIGLGV-IFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVT  232 (461)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhH
Confidence              111111111111111 111111000000010 10   000112335778899999999 999999999999999763

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.60  E-value=1e-05  Score=75.97  Aligned_cols=225  Identities=11%  Similarity=0.012  Sum_probs=118.4

Q ss_pred             cCchHHHHHHHHHhhhhhhhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732           27 SKGEWWHAGFHLTTAIVGPTILTLPYVFR-GLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (263)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (263)
                      |+-+.++.+...+.+++|+|++.+|.... ..|....++..++.++.....+....|.....|+.+.-...|   +++.+
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y---~~~~f   77 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY---AKAGF   77 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhh---HHhHc
Confidence            45678899999999999999999997654 455433445566777777777777888776655322111244   78899


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHH-HHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM-VTVVMIVLSQLPTFHSLRHINLVSLL  184 (263)
Q Consensus       106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~~~lpl~~~r~l~~l~~~S~~~~~  184 (263)
                      ||.+| .++.....+........|.......+...++.+..  ......+.+. ..+..+-..-.+..+..+++..+...
T Consensus        78 G~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~  154 (468)
T TIGR03810        78 GPFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG--GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI  154 (468)
T ss_pred             CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            99644 66666655544444445555444444444432211  1111111111 11111222223555555555544433


Q ss_pred             HHHHHHHHHHHHHHhcCcCCCCCCCcc-c-cc-Ccchhh-hhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhhee
Q 024732          185 LSLGYSFLVVGACINAGFSKNAPPKDY-S-LE-SSKSAR-IFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVF  258 (263)
Q Consensus       185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~-~-~~-~~~~~~-~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~  258 (263)
                      .-+...+++++..+.....+... .++ + .. +.+..+ ...+..++....|+| |-.....+-+|+|++++-.+.+.
T Consensus       155 ~ki~~l~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~  232 (468)
T TIGR03810       155 AKLVPLFVFIVIGIFAFKGDTFT-NDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATV  232 (468)
T ss_pred             HHHHHHHHHHHHHHHHhcHhhcC-ccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHH
Confidence            22222111111111110000000 000 0 00 001111 224557888999999 98888888899998766555543

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10836 lysine transporter; Provisional

Probab=98.60  E-value=2.2e-05  Score=74.17  Aligned_cols=91  Identities=10%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++.....+.+++|+|++..|. +.++.|-...++..++.+++....+.-+.|.....|+.|    ....-+++
T Consensus        13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g~y~y~~~   88 (489)
T PRK10836         13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----SFATYGQN   88 (489)
T ss_pred             ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHH
Confidence            4688899999999999999999999995 777888655677888888888888888899888766554    34555666


Q ss_pred             HhCchhHHHHHHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTA  120 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~  120 (263)
                      .+|+.+| .++.....+
T Consensus        89 ~~g~~~g-f~~Gw~~~~  104 (489)
T PRK10836         89 YVEEGFG-FALGWNYWY  104 (489)
T ss_pred             HcChHHH-HHHHHHHHH
Confidence            7888655 555655443

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.57  E-value=2.3e-06  Score=79.04  Aligned_cols=218  Identities=11%  Similarity=0.066  Sum_probs=124.1

Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (263)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~-~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (263)
                      +++++.....+.++|+|+...| .....|.. ..+..++.+.+. ........|.....|+.|    ....-.++.+||+
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G----G~y~~~~~~~g~~   75 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG----GIYVWVSRAFGPF   75 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST----THHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC----eeeehhhhccccc
Confidence            5788999999999999999999 77777764 444444444444 455666666655444333    4556677889997


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHH-HHHHHHHHHHhhcCCCcchhhHHHHHHHHHHH
Q 024732          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEF-IAMVTVVMIVLSQLPTFHSLRHINLVSLLLSL  187 (263)
Q Consensus       109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~  187 (263)
                      +| .+......+........+.....+.+...+....+  ......+ ..+..++.+-..-.+..+..+++........+
T Consensus        76 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i  152 (426)
T PF13520_consen   76 WG-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN--PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI  152 (426)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT--CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ch-hcccceeEEEeeccccccccchhhhhhhccccccc--cccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence            66 77777777777777777777777777666532100  1111111 11222222333344456666666655554344


Q ss_pred             -HHHHHHHHHHHhcCcCCCCCC--Ccc-cccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhheeee
Q 024732          188 -GYSFLVVGACINAGFSKNAPP--KDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVFIN  260 (263)
Q Consensus       188 -~~~~iiv~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~~~  260 (263)
                       ....+++...+.....+..+.  .+. +..+..   ....+.+++..+|+| |........+|+|| ++..+.+.++
T Consensus       153 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~  226 (426)
T PF13520_consen  153 VIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSG---WPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIIS  226 (426)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHH----SHSCSSCSS---SSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHH
T ss_pred             hhhhhhheeEEEeeecccccccccccccccCCcc---ccchhhHHHHHHhhcccccccccccccccc-hhheeecccc
Confidence             222222223333321111000  000 111111   113678889999999 99999999999999 5666655443

...

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.57  E-value=1.6e-05  Score=74.84  Aligned_cols=216  Identities=10%  Similarity=0.027  Sum_probs=123.2

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      ||+-+.++.....+..++|+|++..| .+.+..|-...++..++.+++......-+.|.....|+.+.   .|..-+++.
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG---~~~~~~~~~   77 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG---SFATYASRF   77 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHH
Confidence            36677888999999999999999877 66777775433555666777777777777887776552221   577788899


Q ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (263)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~  184 (263)
                      +|+.+| .++.....+.....+.......+..+....+      ......|..+..++.. +.-.+..+...++......
T Consensus        78 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~~  149 (478)
T TIGR00913        78 VDPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD------KVNPAVWIAIFYVFIV-IINLFGVKGYGEAEFWFSS  149 (478)
T ss_pred             cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHH
Confidence            999766 7777777666655556666666666554322      1122223322222211 2233344444444433321


Q ss_pred             HHHHHHH--HHHHH-HHhcCcCCCCC-C-Ccc---cccCcc--hhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          185 LSLGYSF--LVVGA-CINAGFSKNAP-P-KDY---SLESSK--SARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       185 ~~~~~~~--iiv~~-~~~~~~~~~~~-~-~~~---~~~~~~--~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      .-+...+  +++.. ......+...+ . ..+   ....++  ......+..++....|+| |-.....+-+|+|||++
T Consensus       150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r  228 (478)
T TIGR00913       150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRK  228 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh
Confidence            1111111  11111 11111111000 0 000   000000  012346778888999999 99999999999999976

>PRK15049 L-asparagine permease; Provisional

Probab=98.56  E-value=1.7e-05  Score=75.20  Aligned_cols=92  Identities=12%  Similarity=0.101  Sum_probs=70.0

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++....-+..++|+|++..|. +.+..|- .+++..++.+++.+..+.-+.|.....|..|    ....-+++
T Consensus        26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG----g~y~y~~~  100 (499)
T PRK15049         26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG----SFVSYARE  100 (499)
T ss_pred             hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHH
Confidence            4677788999999999999999998885 7788886 4567777778888888888888877765444    45566778


Q ss_pred             HhCchhHHHHHHHHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAIN  122 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~  122 (263)
                      .+|+++| +++.....+..
T Consensus       101 ~~G~~~g-f~~GW~~~l~~  118 (499)
T PRK15049        101 FLGEKAA-YVAGWMYFINW  118 (499)
T ss_pred             HhCcHhH-HHHHHHHHHHH
Confidence            8999655 66676655443

>TIGR00908 2A0305 ethanolamine permease

Probab=98.56  E-value=1.1e-05  Score=75.11  Aligned_cols=215  Identities=10%  Similarity=0.003  Sum_probs=117.4

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      .+|+-+.++.....+..++|....+.+.+++..|+..-++..++.+++....+.-+.|.....|+.|    ..-.-+++.
T Consensus         5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~~~~   80 (442)
T TIGR00908         5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFARRA   80 (442)
T ss_pred             hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Confidence            4677788888888888888855566688899999864445555555555666666777766655444    334456788


Q ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (263)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~  184 (263)
                      +||.+| .++.....+........+....++.+...++..      ....+.++...+.. +.-.+..+...++..+..+
T Consensus        81 ~G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~------~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~~  152 (442)
T TIGR00908        81 FGPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG------PGWLAALVFYIVFI-GINILGVGEAAKLEFVVTA  152 (442)
T ss_pred             hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------chhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHH
Confidence            999644 777776666666666667777777776665321      11111111111111 1122233333333332222


Q ss_pred             HHHHHHHHHHHHHHhcCcCC-CCCCCcc-cccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          185 LSLGYSFLVVGACINAGFSK-NAPPKDY-SLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       185 ~~~~~~~iiv~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ..+....+.+.. .....+. +.-..+. +..+.......+++.++....|+| |.......-+|+|||++
T Consensus       153 ~~~~~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r  222 (442)
T TIGR00908       153 VAIIALGVFIGA-MVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR  222 (442)
T ss_pred             HHHHHHHHHHHH-HhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            111111111111 1111100 0000000 000001112235677888889999 99999999999999975

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.55  E-value=4.2e-05  Score=71.63  Aligned_cols=216  Identities=12%  Similarity=0.090  Sum_probs=119.8

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++.....+..++|+|++.+|.. .+..|- ...+..++.+++....+.-+.|.....|..|    ..-+-+++
T Consensus         7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G----g~y~y~~~   81 (457)
T PRK10580          7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS----SFSRYAQE   81 (457)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence            46778889999999999999999999854 667776 4577777777888888888888877655444    34446688


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~  183 (263)
                      .+||.+| .++.+...+.....+.......+..+...++    +  .....+.+...++.. ..-.+..+....+.....
T Consensus        82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~l~~-~ln~~gv~~~~~~~~~~~  153 (457)
T PRK10580         82 NLGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFP----T--VPHWIWVLSVVLIIC-AVNLMSVKVFGELEFWFS  153 (457)
T ss_pred             HcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C--CChHHHHHHHHHHHH-HHHHccchhHHHHHHHHH
Confidence            8999655 6677665554444444433444444443332    1  122222222222222 223334444444433222


Q ss_pred             HHHHHHHHHH--HH--HHHhcCcCCCCC-CCcccccCc-c-hhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          184 LLSLGYSFLV--VG--ACINAGFSKNAP-PKDYSLESS-K-SARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       184 ~~~~~~~~ii--v~--~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      ...+...+++  ..  ...........+ ..+....+. . .....+.+.++....|+| |.......-+|+|||++.
T Consensus       154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~  231 (457)
T PRK10580        154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKS  231 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhH
Confidence            1111111111  11  111111100000 001101110 0 111235778889999999 999999999999999863

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.45  E-value=3.2e-05  Score=73.27  Aligned_cols=219  Identities=11%  Similarity=0.064  Sum_probs=114.2

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYV-FRGLGWG-LGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~i-~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      .+|+-+.++.....+.+++|+|++..|.. ..+.|-. ...+..++.+++....+..+.|.....|+.|.    .-.-.+
T Consensus        40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG----~y~~~~  115 (501)
T TIGR00911        40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG----EYNYIL  115 (501)
T ss_pred             cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc----hhhhHH
Confidence            56778889999999999999999999865 5556742 12244456666677777778887776555442    223345


Q ss_pred             HHhCchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhh-hhhccccccccchhhHHHHHHH--HHHHHhhcCCCcchhhHH
Q 024732          103 DVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQ-IMYSDLYPNGSLKLYEFIAMVT--VVMIVLSQLPTFHSLRHI  178 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~~~~-~~~g~~i~y~i~~~~~l~-~~~~~~~~~~~~~~~~~~~i~~--~~~lpl~~~r~l~~l~~~  178 (263)
                      +.+||.+| .+....... ...+.+..+....++.+. .++..    .........++..  +.++-+.-.+..+...++
T Consensus       116 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~----~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~  190 (501)
T TIGR00911       116 EVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD----CEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRV  190 (501)
T ss_pred             hHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            57998655 555443322 222334444444454432 22221    1111111111111  111222223344555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCccc-ccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          179 NLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       179 S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ..+.....+...+++++..+.....++.+..+.+ .......+..++..++....|+| |-.....+-+|+|||++
T Consensus       191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r  266 (501)
T TIGR00911       191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR  266 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh
Confidence            5444332322222222222221111110001111 11111122346778889999999 99999999999999975

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.42  E-value=5.8e-05  Score=67.33  Aligned_cols=209  Identities=14%  Similarity=0.141  Sum_probs=122.8

Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCch
Q 024732           29 GEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSG  108 (263)
Q Consensus        29 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~  108 (263)
                      -|..|....+..+++|.|++.+|....+.+ --|-+..++.+.....-.+++.+..+++  ++ +  +..|..++.+||.
T Consensus         2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~--p~-~--~l~~~~~~~~Gk~   75 (320)
T PF03845_consen    2 ISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRF--PG-K--TLVEISEKLFGKW   75 (320)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHC--CC-C--CHHHHHHHHhCcH
Confidence            456889999999999999999998877664 1222334444445555555555555542  22 3  8999999999994


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHH
Q 024732          109 WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLG  188 (263)
Q Consensus       109 ~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~  188 (263)
                       ...++.+...+..+......+...+|.+...+.   |+  .+... .....++..-..-.+.++...+.+.+-....+.
T Consensus        76 -lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l---p~--TP~~~-i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i  148 (320)
T PF03845_consen   76 -LGKIINLLYILYFLLISALVLREFSEFIKTYLL---PE--TPIWV-IILLFLLVAAYAARKGIEVIARVAEILFPIFLI  148 (320)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---Cc--CCHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence             556777777777777777777777777765432   11  12222 222223333344556677777755444432222


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCccc-ccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhhhhee
Q 024732          189 YSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISMFSVF  258 (263)
Q Consensus       189 ~~~iiv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~~~~~  258 (263)
                      ...++... ..+..       |++ +.+.-..+..+.+.+.-...+.| +...+.-+...+|+|++.++...
T Consensus       149 ~~~~i~~~-~~~~~-------~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~  212 (320)
T PF03845_consen  149 LLLLILLL-SIPNI-------DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLL  212 (320)
T ss_pred             HHHHHHHH-hcccC-------CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            22222111 11111       111 11111123346777777777788 77777778888888887766543

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.40  E-value=4.7e-05  Score=70.99  Aligned_cols=216  Identities=12%  Similarity=0.044  Sum_probs=114.8

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHH-HhhCh-hHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVF-RGLGW-GLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~-i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      .+|+-+.++.....+..++|+|++..|... +..|- ...++..++.+++....+....|.....|+.|. ...|   .+
T Consensus         6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y---~~   81 (445)
T PRK11357          6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVY---LK   81 (445)
T ss_pred             ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceee---HH
Confidence            468889999999999999999999999764 44553 234445566666667777777777666555553 2345   34


Q ss_pred             HHhCchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 024732          103 DVLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~  181 (263)
                      +.+||.+| .++....+. ........+....++.+....+    .+...... ..+.....+-..-.+..+...++..+
T Consensus        82 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~----~~~~~~~~-~~~~~~~~~~~ln~~gv~~~~~v~~~  155 (445)
T PRK11357         82 NAGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTP----IDPLLGKF-IAAGLIIAFMLLHLRSVEGGAAFQTL  155 (445)
T ss_pred             HhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            67898655 556654332 2222333455555555544322    11111111 11111111222223444444444443


Q ss_pred             HHHHHHHHHHHHHHHHH--hcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          182 SLLLSLGYSFLVVGACI--NAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       182 ~~~~~~~~~~iiv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      .....+...+++++..+  .+..+...+ .+.. . ....+..+.+.++....|+| |-......-+|+|||++.
T Consensus       156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~-~~~~-~-~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~  227 (445)
T PRK11357        156 ITIAKIIPFTIVIGLGIFWFKAENFAAP-TTTA-I-GATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT  227 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccccCC-Cccc-c-cccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence            33322222222222212  121110000 0000 0 01112335778889999999 999999999999999864

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.35  E-value=2.2e-05  Score=79.51  Aligned_cols=220  Identities=15%  Similarity=0.086  Sum_probs=125.1

Q ss_pred             cCchHHHHHHHH-HhhhhhhhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccc-ccccCcccccHHHHHHH
Q 024732           27 SKGEWWHAGFHL-TTAIVGPTILT-LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDH-CEKAGRRHIRFRELAAD  103 (263)
Q Consensus        27 ~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~-~~~~~~~~~sy~~l~~~  103 (263)
                      ++-+|+.+++.- +.+++|+|+.- +++...+.|...+++..++.++++..|+.-+.+.+.. .++.|.   .|. ...+
T Consensus        76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y~-yisr  151 (953)
T TIGR00930        76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AYY-LISR  151 (953)
T ss_pred             cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HHH-HHHH
Confidence            455666666666 99999999865 4588889998888999999999999999999988775 444443   344 3456


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc---cccc-hhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYP---NGSL-KLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~---~~~~-~~~~~~~i~~~~~lpl~~~r~l~~l~~~S  179 (263)
                      .+|+.+| ..+.++..+.+...+..|.+-.++.+..++.....   .... ....+..+..+++..+. ....+...++.
T Consensus       152 alGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~q  229 (953)
T TIGR00930       152 SLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKAQ  229 (953)
T ss_pred             HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            7898655 66677777767777788888888888777643210   0011 11222222222222222 22334344333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCCCCC-Cccc---cc-C--cchhhhh-hHHHHHHHHHHHh-ccCchHHhHHhcchh
Q 024732          180 LVSLLLSLGYSFLVVGACINAGFSKNAPP-KDYS---LE-S--SKSARIF-SAFTSISIIAAIF-GNGILPEIQVTSTLL  250 (263)
Q Consensus       180 ~~~~~~~~~~~~iiv~~~~~~~~~~~~~~-~~~~---~~-~--~~~~~~~-~~~~a~g~~~faf-~h~~i~~I~~~M~~p  250 (263)
                      .+-++..++.++.+++..+....+..... ..++   +. +  +...+.. .++..++++.+|| |......+-+|+|+|
T Consensus       230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP  309 (953)
T TIGR00930       230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP  309 (953)
T ss_pred             HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            33332212111111111111110000000 0000   00 0  0000111 2567778888899 999999999999999


Q ss_pred             hh
Q 024732          251 YI  252 (263)
Q Consensus       251 ~~  252 (263)
                      ++
T Consensus       310 ~r  311 (953)
T TIGR00930       310 QK  311 (953)
T ss_pred             hh
Confidence            76

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.30  E-value=0.00013  Score=68.08  Aligned_cols=203  Identities=12%  Similarity=0.083  Sum_probs=110.4

Q ss_pred             HhhhhhhhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHHHHH
Q 024732           39 TTAIVGPTILTLPY-VFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI  117 (263)
Q Consensus        39 ~~~~iG~GiL~LP~-af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~  117 (263)
                      +.+++|+|++-.|. +.++.|. ..++..++.+++....+..+.|.....|+.|    ...+-+++.+|+.+| .++...
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G----g~y~y~~~~~G~~~g-f~~gw~   77 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG----SFSTYADKAIGRWAG-YTIGWL   77 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHcChHHH-HHHHHH
Confidence            46889999999996 8889996 5777888888888888888888877765444    456667789999655 666666


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 024732          118 QTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGAC  197 (263)
Q Consensus       118 ~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~~~  197 (263)
                      ........+.......+..+....    ++  .....+..+..++...+. .+..+....+..+....-+...++.++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~  150 (446)
T PRK10197         78 YWWFWVLVIPLEANIAAMILHSWV----PG--IPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLG  150 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc----cc--CcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            655444443333333333333222    11  122222222222222122 22334343333333221222211111111


Q ss_pred             H--hcCcCCCCCCC---cccccCc-chhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732          198 I--NAGFSKNAPPK---DYSLESS-KSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM  254 (263)
Q Consensus       198 ~--~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~  254 (263)
                      +  ..+.....+..   ++.-.+. ....+.++..++....|+| |-......-+|+|||++..
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~i  214 (446)
T PRK10197        151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHI  214 (446)
T ss_pred             HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhH
Confidence            1  12111000000   0000000 0112336888999999999 9999999999999998643

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=98.25  E-value=2.1e-05  Score=73.01  Aligned_cols=219  Identities=14%  Similarity=0.110  Sum_probs=135.5

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLG--WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      .+|+-+.+.++..++.+++|+|+...|-...+.+  ...++++-++.++++.-.+..-.|.-..-|+.|.   +|.=+.+
T Consensus        10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ayi~~   86 (479)
T KOG1287|consen   10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAYISE   86 (479)
T ss_pred             ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhhHHH
Confidence            4678888999999999999999999997766554  5567778888889999888888887666555554   4665555


Q ss_pred             HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 024732          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGEC-LQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~  181 (263)
                       +||+.|+....-+..++..-..+..+-+..++. +.+.++ .|   +..+..--++..+++..+. ..|...+++.+.+
T Consensus        87 -afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c---~~p~~~~~lla~~~l~~lt-~~n~~~V~~a~~v  160 (479)
T KOG1287|consen   87 -AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC---DVPRVASKLLAAALLVLLT-LINSFSVKWATRV  160 (479)
T ss_pred             -HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC---CCchHHHHHHHHHHHHHHH-HHhhhhhhHHHHH
Confidence             588766644434444444444446666777776 767765 22   2233322233334444333 4466777776655


Q ss_pred             HHHHHH---HHHHHHHHHHHhcCcCCCCCCCccc-ccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          182 SLLLSL---GYSFLVVGACINAGFSKNAPPKDYS-LESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       182 ~~~~~~---~~~~iiv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      -.+.++   ..+.++++..++.....+..+.+.+ ..+++ .+..+...++=.-.||| |-+.+-.+-+|+|||++.
T Consensus       161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~-~~~g~i~lafysglfa~~GWd~lN~vteEiknP~kt  236 (479)
T KOG1287|consen  161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSD-TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRT  236 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhchheeEecccccccccccccCc-CchHHHHHHHHHhhhcccCchhhccchHhhcCcccc
Confidence            443332   2222222333333222111111111 33322 23446778888899999 999999999999999763

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.24  E-value=0.00021  Score=66.54  Aligned_cols=219  Identities=12%  Similarity=0.081  Sum_probs=121.4

Q ss_pred             ccCchHHH-HHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           26 ESKGEWWH-AGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        26 ~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      +|+-+.++ ........++|.|++.+|......+ ....+..++.+++....+....|.....|+.|    .+-+-.++.
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----G~y~~~~~~   85 (466)
T COG0531          11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG----GAYAYAKRA   85 (466)
T ss_pred             CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----Ceeeehhhh
Confidence            45555555 8888888999999999999988776 22222234444444444555666555444344    355566778


Q ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHH--HHHHhhcCCCcchhhHHHHHH
Q 024732          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTV--VMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~--~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      +|++++ .++.....+..........+..+..+..+++... ........+..+..+  ..+-+.-.+..+...+...+.
T Consensus        86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~  163 (466)
T COG0531          86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII  163 (466)
T ss_pred             cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            998656 7777777777777777777777776666655310 000000111222222  222223334444444444444


Q ss_pred             HHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          183 LLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       183 ~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      ....+...+++....+........  ..................+++...++| |-....+.-+|+|||++.
T Consensus       164 ~~~~i~~~i~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~  233 (466)
T COG0531         164 TILKIIILLIFIILGLFAFGFSNG--NLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRT  233 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccc--ccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccc
Confidence            433333333332332333221110  001100001112225778889999999 999999999999999654

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.20  E-value=0.00068  Score=63.81  Aligned_cols=220  Identities=11%  Similarity=0.046  Sum_probs=108.4

Q ss_pred             cccCchHHHHHHHHHhhh-hhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAI-VGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~-iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      .+|+-+.++....-+..+ +|.|+.+.| .+....|- ..+...++.++.....+.-+.|.....|..|.    .-.-++
T Consensus        11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG----~Y~~~~   85 (475)
T TIGR03428        11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGA----IYQWSR   85 (475)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----HHHHHH
Confidence            567777777766555553 788888887 55566665 34555666666667777777777776665553    233356


Q ss_pred             HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc---ccccccc----h-hhHHHHHHHH-HHHHhhcCCCcc
Q 024732          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSD---LYPNGSL----K-LYEFIAMVTV-VMIVLSQLPTFH  173 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~---~~~~~~~----~-~~~~~~i~~~-~~lpl~~~r~l~  173 (263)
                      +.+||.+| +++.....+................+..+...   ...+.+.    . ...+.+...+ ++.-+.-.+..+
T Consensus        86 ~~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k  164 (475)
T TIGR03428        86 RMGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE  164 (475)
T ss_pred             HHcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            67898655 66666655544433333333333333332111   1001011    0 1111111111 111112223344


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCccc--ccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchh
Q 024732          174 SLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYS--LESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLL  250 (263)
Q Consensus       174 ~l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p  250 (263)
                      ...++..+.....+...+++++.......+ + +...++  ..+...........+.....|+| |-.....+-+|+|||
T Consensus       165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~~-~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP  242 (475)
T TIGR03428       165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQR-G-PGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP  242 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-cceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence            444444443332222222222222222111 1 100010  00111111223555666778999 999999999999999


Q ss_pred             hh
Q 024732          251 YI  252 (263)
Q Consensus       251 ~~  252 (263)
                      ++
T Consensus       243 ~r  244 (475)
T TIGR03428       243 RR  244 (475)
T ss_pred             ch
Confidence            76

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.09  E-value=0.00083  Score=61.84  Aligned_cols=217  Identities=15%  Similarity=0.194  Sum_probs=140.0

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .+|+-+.++--+.=+...+|+|.. +=-.+.+..|- .-++.-.+.|++.+.=++.|.|...++|  ...  |+.+.+++
T Consensus        11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p--~~g--SF~~~a~~   85 (462)
T COG1113          11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANP--VSG--SFSDYARK   85 (462)
T ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCC--cHHHHHHH
Confidence            457778888888888999999963 44466677774 2345566778888888999999887643  333  99999999


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHH--HHhhcCCCcchhhHH-HH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVM--IVLSQLPTFHSLRHI-NL  180 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~--lpl~~~r~l~~l~~~-S~  180 (263)
                      .+|+ |..++....-...-...+++-+..++..++..++.      .+.+.+.++..+++  .=+.-.|-+.++.++ ++
T Consensus        86 ~lG~-~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~------vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl  158 (462)
T COG1113          86 YLGP-WAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD------VPQWVFALAAVVLLLAVNLISVKVFGELEFWFAL  158 (462)
T ss_pred             Hhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 56688888888888888999999999998888753      23444433333332  333455666655543 34


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCCCCCCccc-cc---CcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732          181 VSLLLSLGYSFLVVGACINAGFSKNAPPKDYS-LE---SSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM  254 (263)
Q Consensus       181 ~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~  254 (263)
                      +=+..++..+++.++. +..+...+....+.+ +.   |.-.+.+.+++.++-+.+||| |.-++=.--+|-|||++..
T Consensus       159 IKV~aIi~~Iv~G~~l-l~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~i  236 (462)
T COG1113         159 IKVAAIIAFIVVGIVL-LFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAI  236 (462)
T ss_pred             HHHHHHHHHHHHHHHH-HhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHH
Confidence            4343222222222111 222222111011111 11   111123457899999999999 9999988899999998754

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.72  E-value=0.011  Score=56.05  Aligned_cols=79  Identities=13%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHccccccc-cCcccccHHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLDHCEK-AGRRHIRFRELAAD  103 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~-~~t~~lL~~~~~~~~~-~~~~~~sy~~l~~~  103 (263)
                      +|+-++++.+...+.+++|.+  .+|.+++..|.. +++..++.+++. .-.+..+.|.....|+ .|.    --.=.++
T Consensus         6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG----~Y~w~~~   78 (496)
T PRK15238          6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGG----IYSWMNK   78 (496)
T ss_pred             cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----HHHHHHH
Confidence            567888999888889999976  679889988863 444444444443 2344556666555443 232    2333456


Q ss_pred             HhCchhHH
Q 024732          104 VLGSGWMF  111 (263)
Q Consensus       104 ~~G~~~g~  111 (263)
                      ++|++||.
T Consensus        79 ~~G~~~gf   86 (496)
T PRK15238         79 SVGPKFAF   86 (496)
T ss_pred             HcCchHHH
Confidence            78987774

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=97.65  E-value=0.00075  Score=59.60  Aligned_cols=132  Identities=14%  Similarity=0.192  Sum_probs=91.2

Q ss_pred             HHHHHHhhhhhhhhhH---HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhH
Q 024732           34 AGFHLTTAIVGPTILT---LPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM  110 (263)
Q Consensus        34 a~~~l~~~~iG~GiL~---LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g  110 (263)
                      -.+-.+.+++|+|-=+   +=-=|.+-|+ .|..-.++++.+-..++..+.+..++   .+.+  +|+|+-+..+|++|+
T Consensus         8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~---f~a~--~y~~~~~~v~~~~~~   81 (349)
T COG3949           8 WAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKK---FNAT--SYREILKYVSGPKFA   81 (349)
T ss_pred             HHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH---hccc--chHHHHHHHhhHHHH
Confidence            3455566888888543   1123455665 46666777777777788888887776   3344  999999999999776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732          111 FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (263)
Q Consensus       111 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S  179 (263)
                       .+.|+.+.+..++.++.-+--++..+++.+.       ++.+.=.++..+++.-.-+.++.+.+-.+.
T Consensus        82 -ki~d~~iif~lf~~~vVM~AGags~~~e~~~-------lP~wiGali~i~~v~i~lfl~~vegi~tvn  142 (349)
T COG3949          82 -KIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG-------LPYWIGALIIILLVLILLFLGRVEGIITVN  142 (349)
T ss_pred             -HHHHHHHHHHHHHHHHHHhccchhHHHHHhC-------ccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence             6679999999999998888878878777653       333332345555555566777666655433

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.64  E-value=0.0078  Score=56.69  Aligned_cols=111  Identities=12%  Similarity=-0.012  Sum_probs=63.2

Q ss_pred             cccCchHHHHHHHHHhhhhh--hhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVG--PTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG--~GiL-~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~  101 (263)
                      .+|+-+.++....-. +++|  .|+. +++.+.++.|-..-++..++.+++....+.-+.|.....|+.|.    ...-+
T Consensus        10 l~r~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg----~y~~~   84 (482)
T TIGR00907        10 LKREFSLWSIFGFAF-SISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGG----QYFWS   84 (482)
T ss_pred             eecccchhHHHHHHH-HHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCcc----HHHHH
Confidence            456666665543333 3454  4543 34557777887555666777777777788888888777655442    33334


Q ss_pred             HHHhCchhH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024732          102 ADVLGSGWM---FYFVIFIQTAINTGVGIGAILLAGECLQIM  140 (263)
Q Consensus       102 ~~~~G~~~g---~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~  140 (263)
                      ++.+|+++|   .+++.....+.....+.+.....++.+...
T Consensus        85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~  126 (482)
T TIGR00907        85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGI  126 (482)
T ss_pred             HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556664333   244555555545555544444555555443

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=97.58  E-value=0.0041  Score=58.51  Aligned_cols=217  Identities=12%  Similarity=0.114  Sum_probs=140.4

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      .||+-.-.+-.+.=+...+|+|.+ +.-.+.++.|-..-++-.++.+.+.+..+.-|.|.+...|..|    +|..-+.+
T Consensus        42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG----sF~~ya~r  117 (541)
T COG0833          42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG----SFSTYATR  117 (541)
T ss_pred             hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----chhhhhhh
Confidence            467777788888888999999974 6779999999988899999999999999999999988865322    68888888


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhh--cCCCcchhhH-HHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSLRH-INL  180 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~--~~r~l~~l~~-~S~  180 (263)
                      ..++.|| ..+...-.++-.-++-.-++.++..++..++    + ..+...|..++.++++.+-  -.|-+.+..+ +|.
T Consensus       118 fvdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p----~-~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~  191 (541)
T COG0833         118 FVDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFP----D-TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS  191 (541)
T ss_pred             hcCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC----C-CCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence            8888766 5556555444444444555556655555432    2 2566778887777665554  4455555443 455


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCCCC-CCcccc-cCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          181 VSLLLSLGYSFLVVGACINAGFSKNAP-PKDYSL-ESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       181 ~~~~~~~~~~~iiv~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      +=+++++.+.++.++. ..-+.+++.+ ..+|.- ++.-...+.++...+-+..||| |.-++----.|-+||++
T Consensus       192 iKV~~ii~Fii~gii~-~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K  265 (541)
T COG0833         192 IKVLTIIGFIILGIII-ICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK  265 (541)
T ss_pred             HHHHHHHHHHHHHHHH-hcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh
Confidence            5555444443332221 1122221110 011111 1111223557777788888999 98888777889999976

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=97.51  E-value=0.035  Score=51.89  Aligned_cols=159  Identities=10%  Similarity=0.111  Sum_probs=87.6

Q ss_pred             ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc-cc------hhhHHHHHHHHHHHHhh
Q 024732           95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG-SL------KLYEFIAMVTVVMIVLS  167 (263)
Q Consensus        95 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-~~------~~~~~~~i~~~~~lpl~  167 (263)
                      .++.-+.|..||+ +|..+..++..+...|-........++.+..++....+.. +.      ......+++..+.+++.
T Consensus        76 l~~~v~sR~~FG~-~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~  154 (442)
T TIGR00800        76 LPFPVLSRASFGI-YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL  154 (442)
T ss_pred             CCcchhhhhhhhh-hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence            3788999999999 5988999999999999999999999988887776543221 11      12222345556666655


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh--ccCchHHhHH
Q 024732          168 QLPTFHSLRHINLVSLLLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF--GNGILPEIQV  245 (263)
Q Consensus       168 ~~r~l~~l~~~S~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf--~h~~i~~I~~  245 (263)
                      ...-.+-.++....+....+....+.+......+-.... ....+. ..+......++.++...+=.+  ...+.+...+
T Consensus       155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~-~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysR  232 (442)
T TIGR00800       155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPL-GELTGT-LHGSTGAWAFLYALSLVIGSFATWATNAPDFTR  232 (442)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc-ccCCCC-CCcchhHHHHHHHHHHHHHHHHHHHcCchhhhh
Confidence            555555555555555432221211111111111100000 000000 011112234555554433222  5667899999


Q ss_pred             hcchhhhhhhh
Q 024732          246 TSTLLYISMFS  256 (263)
Q Consensus       246 ~M~~p~~~~~~  256 (263)
                      .+|+|++....
T Consensus       233 y~~~~~~~~~~  243 (442)
T TIGR00800       233 FGKSKKTAIWG  243 (442)
T ss_pred             hcCCccchHHH
Confidence            99998875544

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.47  E-value=0.016  Score=55.19  Aligned_cols=82  Identities=13%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHH--HHHHHHHcccccc-ccCcccccHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFY--SYYLMSKVLDHCE-KAGRRHIRFRELAA  102 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~--t~~lL~~~~~~~~-~~~~~~~sy~~l~~  102 (263)
                      +++-+.++-++-......  ++-.+| ++++.|+  +.+...+++.+.+.  .+....|.....| +.|    ..-.=++
T Consensus         3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~   73 (507)
T TIGR00910         3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVS   73 (507)
T ss_pred             CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehh
Confidence            355676666555555554  556888 5788884  45555555544433  5566666655322 223    2233357


Q ss_pred             HHhCchhHHHHHHHH
Q 024732          103 DVLGSGWMFYFVIFI  117 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~  117 (263)
                      +++|++||. ++.+.
T Consensus        74 ~a~G~~~Gf-~~~~~   87 (507)
T TIGR00910        74 NTLGERFGF-AAIFF   87 (507)
T ss_pred             hccCccHHH-HHHHH
Confidence            789998774 44333

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=97.44  E-value=0.015  Score=52.41  Aligned_cols=152  Identities=15%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             ccccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHH----HHHHHHHHHHHHHHcccccc
Q 024732           13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTV----MGFVTFYSYYLMSKVLDHCE   88 (263)
Q Consensus        13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~----~~~~~~~t~~lL~~~~~~~~   88 (263)
                      .+..+|+.|= +   ..+.+...-+=+.++-|+|.+-=|..-..-||+++.+-.++    .+..-.|...++.  .|+  
T Consensus        40 A~~~~DGvDY-v---P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S--vR~--  111 (376)
T PF02554_consen   40 AHTMNDGVDY-V---PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS--VRH--  111 (376)
T ss_pred             eeECCCCCCC-C---CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh--hcC--
Confidence            3555566552 1   23345566677789999999999988899999988776654    4444455544433  222  


Q ss_pred             ccCcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhc
Q 024732           89 KAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ  168 (263)
Q Consensus        89 ~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~  168 (263)
                       .| +  |.+|++++..||+ +|.+..+...+.+.....++....++.+...     |.  .....++.+...+.+-+..
T Consensus       112 -~G-~--Si~~i~~~~lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~~-----p~--~~~~~~~~I~~Ai~~G~~~  179 (376)
T PF02554_consen  112 -KG-K--SIGEIAGKYLGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVNS-----PW--AATSSLLFIPIAILFGLLV  179 (376)
T ss_pred             -CC-c--cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----hh--HHHHHHHHHHHHHHHhHhh
Confidence             23 3  8999999999996 8899999998888888888888888776442     11  1223334444555555554


Q ss_pred             CCCcchhhHHHHHHHH
Q 024732          169 LPTFHSLRHINLVSLL  184 (263)
Q Consensus       169 ~r~l~~l~~~S~~~~~  184 (263)
                      -|.=-++...+.+++.
T Consensus       180 y~~~~~~~~~t~i~vv  195 (376)
T PF02554_consen  180 YKRGGNLGPATIIGVV  195 (376)
T ss_pred             eecCCchHhhHHHHHH
Confidence            3443345555555554

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.30  E-value=0.0018  Score=60.89  Aligned_cols=209  Identities=12%  Similarity=0.102  Sum_probs=107.8

Q ss_pred             Hhhhhhhhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHHHHHH
Q 024732           39 TTAIVGPTIL-TLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFI  117 (263)
Q Consensus        39 ~~~~iG~GiL-~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~  117 (263)
                      +..++|+|+. +.+.+..+.|.....+..++.+++...++.-+.|...+.|..|    .+-..+++.+|+++| ..+.+.
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G----g~y~y~~~~lg~~~G-f~~gw~   81 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG----GFYAYASRGLGPALG-FAAGWA   81 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc----chhhhhhhccCCcCC-ceeeHH
Confidence            3466776654 4567888999877778888888888888888888888755443    455667778998755 545555


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhh--hccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 024732          118 QTAINTGVGIGAILLAGECLQIM--YSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVG  195 (263)
Q Consensus       118 ~~~~~~g~~i~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~  195 (263)
                      ..+.............+..++..  ............ .+..++.+++..+.. ...+........-...-+...+..++
T Consensus        82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li~~ii  159 (478)
T PF00324_consen   82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALIAFII  159 (478)
T ss_pred             HHHHHHHHHHhhhhhhhhhhccccccccccccccccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhhhhhh
Confidence            44444444444444444444433  111100000000 112223322222222 22333333222211111111111111


Q ss_pred             HH-HhcCcCCCCCCC-----ccc----ccCc----chhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhhh
Q 024732          196 AC-INAGFSKNAPPK-----DYS----LESS----KSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYISM  254 (263)
Q Consensus       196 ~~-~~~~~~~~~~~~-----~~~----~~~~----~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~~  254 (263)
                      .. +......+..+.     +..    +.+.    ...++.+++.++...+++| |-......-+|.|||++..
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~I  233 (478)
T PF00324_consen  160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTI  233 (478)
T ss_pred             hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhh
Confidence            11 111111010001     000    1110    1122457889999999999 9999999999999998743

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.02  E-value=0.1  Score=49.15  Aligned_cols=23  Identities=9%  Similarity=-0.146  Sum_probs=20.5

Q ss_pred             HHHHHh-ccCchHHhHHhcchhhh
Q 024732          230 IIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       230 ~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      .+.|+| |-......-+|+|||++
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r  225 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDK  225 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCccc
Confidence            457899 99999999999999976

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK11375 allantoin permease; Provisional

Probab=96.83  E-value=0.47  Score=44.97  Aligned_cols=157  Identities=11%  Similarity=0.029  Sum_probs=78.8

Q ss_pred             ccHHHHHHHHhCchhHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhccccc------cc----cchh--hHHHHHHHH
Q 024732           95 IRFRELAADVLGSGWMFYFVIFIQT-AINTGVGIGAILLAGECLQIMYSDLYP------NG----SLKL--YEFIAMVTV  161 (263)
Q Consensus        95 ~sy~~l~~~~~G~~~g~~~~~~~~~-~~~~g~~i~y~i~~~~~l~~~~~~~~~------~~----~~~~--~~~~~i~~~  161 (263)
                      .++.-+.|..||++ |.++..+... +..+|=........++.+..++....+      ++    ....  ....+++.+
T Consensus        89 l~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  167 (484)
T PRK11375         89 VPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL  167 (484)
T ss_pred             CChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence            48999999999995 8677777663 455555555666677777655543221      11    1111  222234556


Q ss_pred             HHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCCCCCcccccC--cchhhhhhHHHHHHHHHHHh--c
Q 024732          162 VMIVLSQLPTFHSLRHINLVSLLLSLGYSFLVVGACINA-GFSKNAPPKDYSLES--SKSARIFSAFTSISIIAAIF--G  236 (263)
Q Consensus       162 ~~lpl~~~r~l~~l~~~S~~~~~~~~~~~~iiv~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~a~g~~~faf--~  236 (263)
                      +..++.+ ...+.++++..++........+.+++..+.+ +..   +..+....+  ......+....++...+=+|  .
T Consensus       168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~  243 (484)
T PRK11375        168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIG---PIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAP  243 (484)
T ss_pred             HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---hhhccCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence            6666654 4556666666655543322222222222222 111   000110000  00111223444443333344  4


Q ss_pred             cCchHHhHHhcchhhhhhhh
Q 024732          237 NGILPEIQVTSTLLYISMFS  256 (263)
Q Consensus       237 h~~i~~I~~~M~~p~~~~~~  256 (263)
                      ..+.|..-+..|+|++....
T Consensus       244 ~~~~~D~tRy~k~~~~~~~~  263 (484)
T PRK11375        244 AVSASDFTQNAHSFRAQALG  263 (484)
T ss_pred             HccccchhcccCChhhhHHH
Confidence            55789999999999876553

>TIGR02119 panF sodium/pantothenate symporter

Probab=96.80  E-value=0.47  Score=44.66  Aligned_cols=149  Identities=5%  Similarity=0.093  Sum_probs=92.0

Q ss_pred             ccccCchHHHHHHHHHhhhhhh-hhhHHHHHHHhhChhHHHHHHH--HHHHHHH-HHHHHHHHccccccccCcccccHHH
Q 024732           24 VLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLT--VMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRE   99 (263)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~i~g~i~l~--~~~~~~~-~t~~lL~~~~~~~~~~~~~~~sy~~   99 (263)
                      ...|+-+++.....+..+.+|+ ..++.|-...+.|+.+..+...  ..+.+.. .-+..+.+..++   .+  ..|.+|
T Consensus        37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T~~e  111 (471)
T TIGR02119        37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK---YN--AITIND  111 (471)
T ss_pred             EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CccHHH
Confidence            4467888898999998888884 5667888777788643222111  1111111 011112222232   33  349999


Q ss_pred             HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732          100 LAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (263)
Q Consensus       100 l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S  179 (263)
                      .-++-||++..+.+..+...+..++.....+...+..++.++.       .+....+++..++++-.+..--++...++.
T Consensus       112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GG~~av~~td  184 (471)
T TIGR02119       112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------LSYLTALFIFSSSVLIYTTFGGFRAVALTD  184 (471)
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999655567777777777777766667777777776652       333443455556666667777777777777


Q ss_pred             HHHHH
Q 024732          180 LVSLL  184 (263)
Q Consensus       180 ~~~~~  184 (263)
                      .+=..
T Consensus       185 ~iQ~~  189 (471)
T TIGR02119       185 AIQGI  189 (471)
T ss_pred             HHHHH
Confidence            66543

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.66  E-value=0.007  Score=57.97  Aligned_cols=222  Identities=11%  Similarity=0.026  Sum_probs=124.6

Q ss_pred             ccccCchHHHHHHHHHhhhhhhhhhHH-HHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHcccccccc-CcccccHHHHH
Q 024732           24 VLESKGEWWHAGFHLTTAIVGPTILTL-PYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKA-GRRHIRFRELA  101 (263)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~GiL~L-P~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~-~~~~~sy~~l~  101 (263)
                      ..+|.-++++-.+.=+.+++|+|+.-. ..+.++.|=..-++..++.++..+.++.-+.|.....|.. |    ++-.-+
T Consensus        27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG----s~~~ya  102 (554)
T KOG1286|consen   27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG----SFYTYA  102 (554)
T ss_pred             hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc----cceeee
Confidence            357888888888888899999998654 5777777766666777777788888888888887776542 3    233334


Q ss_pred             HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-c-cccc-ccchhhHHHHH--HHHHHHHhhcCCCcchhh
Q 024732          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYS-D-LYPN-GSLKLYEFIAM--VTVVMIVLSQLPTFHSLR  176 (263)
Q Consensus       102 ~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~-~-~~~~-~~~~~~~~~~i--~~~~~lpl~~~r~l~~l~  176 (263)
                      ++..|+-|| .++.....+...-.+-.-....+..++.... . .... ++.+...|..+  ...+++-+.-.+-+-..+
T Consensus       103 ~~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e  181 (554)
T KOG1286|consen  103 YRFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE  181 (554)
T ss_pred             eeeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence            456677666 5556655555555555556666666665530 0 0000 11221222222  223334444455544444


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHhcC-cCCC---CCCCcccc-cC-cchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcc
Q 024732          177 HINLVSL-LLSLGYSFLVVGACINAG-FSKN---APPKDYSL-ES-SKSARIFSAFTSISIIAAIF-GNGILPEIQVTST  248 (263)
Q Consensus       177 ~~S~~~~-~~~~~~~~iiv~~~~~~~-~~~~---~~~~~~~~-~~-~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~  248 (263)
                      +.+.+.- ++.+.+.++.+  .+.-+ .+.+   .-..+|.- ++ .....+.+++.++-+..|+| |--.+-.--+|-|
T Consensus       182 f~~~~~kvl~~v~~~Il~i--Vi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~k  259 (554)
T KOG1286|consen  182 FSLAFNKILTAVGFIILAI--VIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAK  259 (554)
T ss_pred             ehHHHHHHHHHHHHHHhhe--eeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhcc
Confidence            4443332 22222211111  11111 1110   00001110 11 00111447889999999999 9999999999999


Q ss_pred             hhhh
Q 024732          249 LLYI  252 (263)
Q Consensus       249 ~p~~  252 (263)
                      ||++
T Consensus       260 NP~k  263 (554)
T KOG1286|consen  260 NPRK  263 (554)
T ss_pred             CCcc
Confidence            9986

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=96.49  E-value=0.79  Score=43.31  Aligned_cols=149  Identities=5%  Similarity=0.029  Sum_probs=88.3

Q ss_pred             ccccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHH--HHHHHHH-HHHHHHHHHccccccccCcccccHHH
Q 024732           24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCL--TVMGFVT-FYSYYLMSKVLDHCEKAGRRHIRFRE   99 (263)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l--~~~~~~~-~~t~~lL~~~~~~~~~~~~~~~sy~~   99 (263)
                      ...|+-+++-..+.+..+.+| ...++.|-...+.|+.+.....  ...+++. .+-+..+.+..++   .+  ..|..|
T Consensus        38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e  112 (483)
T PRK09442         38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YN--AVTLND  112 (483)
T ss_pred             eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CccHHH
Confidence            345777888888888777766 4778888777777864211111  1111111 1122223333333   33  459999


Q ss_pred             HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732          100 LAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (263)
Q Consensus       100 l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S  179 (263)
                      .-++-||+++.+.+..+...+..++.....+...+..++.++.       ++....+++..++++-.+..--++...++-
T Consensus       113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~av~~TD  185 (483)
T PRK09442        113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-------ISYETGLLIFGITVALYTAFGGFRAVVLTD  185 (483)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            9999999765566666655555555555566666777766642       233433455566666677777777777777


Q ss_pred             HHHHH
Q 024732          180 LVSLL  184 (263)
Q Consensus       180 ~~~~~  184 (263)
                      .+=.+
T Consensus       186 ~iQ~~  190 (483)
T PRK09442        186 ALQGI  190 (483)
T ss_pred             HHHHH
Confidence            66543

>TIGR00835 agcS amino acid carrier protein

Probab=96.26  E-value=0.5  Score=43.91  Aligned_cols=83  Identities=13%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             chHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHH---HHHHHHHHHccccccccCcccccH-----HH
Q 024732           29 GEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVT---FYSYYLMSKVLDHCEKAGRRHIRF-----RE   99 (263)
Q Consensus        29 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~i~g~i~l~~~~~~~---~~t~~lL~~~~~~~~~~~~~~~sy-----~~   99 (263)
                      -|-+++.+..+.+.+|.| ++++|-|.+..| -.+++-|-+.+++.   .|.-..|..-.++  +++  ..+|     -.
T Consensus        47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~--~~~--~g~~~GGP~yy  121 (425)
T TIGR00835        47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRE--RDA--DGVFRGGPMYY  121 (425)
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeee--eCC--CCCEecChHHH
Confidence            577999999999999998 999999988877 24444444444333   3333333322222  111  1136     77


Q ss_pred             HHHHHhCchhHHHHHHHH
Q 024732          100 LAADVLGSGWMFYFVIFI  117 (263)
Q Consensus       100 l~~~~~G~~~g~~~~~~~  117 (263)
                      +-+...|| |-..+..++
T Consensus       122 i~~gl~~k-~lg~lfa~~  138 (425)
T TIGR00835       122 IKKGLGMR-WLAVLFAVF  138 (425)
T ss_pred             HHHHhCcc-HHHHHHHHH
Confidence            77777777 544554554

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK15015 carbon starvation protein A; Provisional

Probab=96.12  E-value=0.27  Score=47.62  Aligned_cols=152  Identities=16%  Similarity=0.124  Sum_probs=91.7

Q ss_pred             ccccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHH----HHHHHHHHHHHHcccccc
Q 024732           13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMG----FVTFYSYYLMSKVLDHCE   88 (263)
Q Consensus        13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~----~~~~~t~~lL~~~~~~~~   88 (263)
                      .+..+|+.|= ++.++--.+   =|=+.++-|+|.+-=|.--++.||+++.+-.++=.    ..-.|..  |.-+.++  
T Consensus        71 A~~~~DG~DY-vPt~k~VLf---GHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~--L~~S~R~--  142 (701)
T PRK15015         71 AVRHNDGLDY-VPTDKKVLF---GHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMV--LFVSTRR--  142 (701)
T ss_pred             ceECCCCCCc-CcCCccchh---HHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhh--eeeeecC--
Confidence            3555566552 333333333   34557999999999999999999999988766533    2333332  2222232  


Q ss_pred             ccCcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhc
Q 024732           89 KAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQ  168 (263)
Q Consensus        89 ~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~  168 (263)
                       .| |  |.+|++++..|++ ++.+..+...+.......++-.++.+.+...     |..  -...++.+-..++..+.+
T Consensus       143 -~G-r--Sig~ia~~~iG~~-~~~lfli~i~~iliiviAvfalvvv~al~~s-----P~~--~fsv~~tIpiAl~mG~~l  210 (701)
T PRK15015        143 -DG-R--SLGELVKEEMGPT-AGVIALVACFMIMVIILAVLAMIVVKALTHS-----PWG--TYTVAFTIPLALFMGIYL  210 (701)
T ss_pred             -CC-c--cHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----cHH--HHHHHHHHHHHHHHHHHh
Confidence             23 3  9999999999995 8888888777777777777777766665321     111  122223333333333322


Q ss_pred             -CCCcchhhHHHHHHHH
Q 024732          169 -LPTFHSLRHINLVSLL  184 (263)
Q Consensus       169 -~r~l~~l~~~S~~~~~  184 (263)
                       -++.......|.+++.
T Consensus       211 ~~~r~g~v~~~SiiGvv  227 (701)
T PRK15015        211 RYLRPGRIGEVSVIGLV  227 (701)
T ss_pred             eeecCCchHHHHHHHHH
Confidence             3345556567777775

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=95.98  E-value=0.26  Score=46.74  Aligned_cols=115  Identities=19%  Similarity=0.245  Sum_probs=74.8

Q ss_pred             ccccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH--HHHHHHHHHcccccccc
Q 024732           13 VCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT--FYSYYLMSKVLDHCEKA   90 (263)
Q Consensus        13 ~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~--~~t~~lL~~~~~~~~~~   90 (263)
                      .+..+||.|= ++   .+.+..+-+=+.++-|+|.+-=|.--++.||++|.+-.++=+++.  .+=...|.-..|+   .
T Consensus        40 A~~~nDG~DY-VP---tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~---~  112 (575)
T COG1966          40 AHRKNDGVDY-VP---TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH---G  112 (575)
T ss_pred             ceeccCCccc-cc---CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc---C
Confidence            4555566551 22   334455556667899999999999999999999988776544332  1111222222222   2


Q ss_pred             CcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024732           91 GRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQ  138 (263)
Q Consensus        91 ~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~  138 (263)
                      | +  |.+|++++.+|++ .+.+..+...+.......++.......+.
T Consensus       113 G-~--Si~~ia~~~lG~~-a~~~~~~~~l~iliiv~Avfa~vv~~~l~  156 (575)
T COG1966         113 G-K--SIGEIAGKYLGRT-AKVFFLLLALILLILVGAVFAAVIAKLLA  156 (575)
T ss_pred             C-c--cHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3 3  9999999999996 77887777766666666666666655543

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=95.98  E-value=1.1  Score=41.19  Aligned_cols=139  Identities=14%  Similarity=0.130  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchh
Q 024732           30 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGW  109 (263)
Q Consensus        30 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~  109 (263)
                      =|....+|+.+-..|+....       +++.-+++..++-.++..--.-+......+   .|   .++.-+.|..||+ +
T Consensus         6 ~W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~---~G---l~~~v~sR~~FG~-~   71 (386)
T TIGR02358         6 IWFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGAD---TG---LSAMGSLKLSLGS-K   71 (386)
T ss_pred             HHHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cC---cCHHHHHHHHHcc-c
Confidence            36667777777666654321       444333333333333333222333333332   33   4799999999999 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 024732          110 MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLLL  185 (263)
Q Consensus       110 g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~~  185 (263)
                      |..+..+...+...|--.......++.+..+.+...+.  .....+..+..++..+.+.. -.+.++++..++...
T Consensus        72 Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~  144 (386)
T TIGR02358        72 GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE--ESPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWL  144 (386)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            98888888888888888888888999998887543221  11233444455545544433 456666666666553

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>TIGR00813 sss transporter, SSS family

Probab=95.83  E-value=1.1  Score=41.37  Aligned_cols=145  Identities=10%  Similarity=0.087  Sum_probs=92.1

Q ss_pred             cCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHh
Q 024732           27 SKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVL  105 (263)
Q Consensus        27 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~  105 (263)
                      |+-+++...+.+..+.+| ...++.|....+.|+. +...............++..+..++   .+  ..|..|.-+.-|
T Consensus         3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~T~~e~l~~Ry   76 (407)
T TIGR00813         3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN---NG--AYTMPEYLEKRF   76 (407)
T ss_pred             CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---cC--CCchhHHHHHHh
Confidence            566677777777776666 6778889877778863 2222222233333444555554443   33  449999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732          106 GSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (263)
Q Consensus       106 G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~  184 (263)
                      |++..|.+..+...+..+......+...+..++.++.       .+...-+++..++++-.+..--++...++-.+=.+
T Consensus        77 g~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~  148 (407)
T TIGR00813        77 GKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV  148 (407)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence            9855667766766777777777777777888777653       22333344455555556666667777777666544

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=95.23  E-value=1.8  Score=39.67  Aligned_cols=145  Identities=13%  Similarity=0.215  Sum_probs=80.9

Q ss_pred             ccCchHHHHHHHHHhhhhhh-hhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      .|+-+++...+.+..+.+|+ ..++.|-...+.|+.. ...-+...........++.+-.++   .+  ..|..|.-++-
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~---~~--~~T~~e~~~~R   78 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR---SG--AVTIPEYLEKR   78 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH---TT----SHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc---cc--hhhhhhhhhhh
Confidence            46677888888888888774 6788998888889753 333333333333334444443333   33  44999999999


Q ss_pred             hCchhH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          105 LGSGWM--FYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       105 ~G~~~g--~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      ||++ .  +.+..+...+.........+...+..++.++.       .+....+++..++.+-.+..--++...+...+=
T Consensus        79 yg~~-~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ  150 (406)
T PF00474_consen   79 YGSK-ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQ  150 (406)
T ss_dssp             T-HH-H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHTTCTT------SHHHHH
T ss_pred             cCCc-hhhhhhcccccchhhhhhhhccccccccchhhccc-------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHH
Confidence            9996 5  55555555555556666666777777766642       233434455555666666766677777666554


Q ss_pred             HH
Q 024732          183 LL  184 (263)
Q Consensus       183 ~~  184 (263)
                      .+
T Consensus       151 ~~  152 (406)
T PF00474_consen  151 GV  152 (406)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>PRK12488 acetate permease; Provisional

Probab=95.19  E-value=3.2  Score=40.01  Aligned_cols=146  Identities=10%  Similarity=0.217  Sum_probs=88.7

Q ss_pred             cccCchHHHHHHHHHhhhhhhh-hhHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHccccccccCcccccHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPT-ILTLPYVFRGLGWGLGFTCLTVMGFVTF-YSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~i~g~i~l~~~~~~~~-~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      ..|+-+|+...+.+..+.++++ .++.|-...+.|+- +....... .+.+ ....++.+-.++   .+  ..|.+|.-+
T Consensus        65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g~-~~g~~~~~~~~a~~lr~---~g--~~T~~d~l~  137 (549)
T PRK12488         65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALGV-LAGWPIILFLIAERLRN---LG--KYTFADVVS  137 (549)
T ss_pred             eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHHH-HHHHHHHHHHHHHHHHH---CC--CcchHHHHH
Confidence            4577788888888888877754 68899888888974 22222211 1111 112333333332   33  358999887


Q ss_pred             HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      +=||.+..|.+..+...+..+.-....+...+..++.++.       .+...-+++..+++.-.+..--++...++..+=
T Consensus       138 ~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ  210 (549)
T PRK12488        138 YRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-------ISYLYAVVIVGALMVLYVTFGGMLATTWVQIIK  210 (549)
T ss_pred             HHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            7787434677777776666666666666667777766642       223333445555666666666677777777665


Q ss_pred             HH
Q 024732          183 LL  184 (263)
Q Consensus       183 ~~  184 (263)
                      .+
T Consensus       211 ~~  212 (549)
T PRK12488        211 AV  212 (549)
T ss_pred             HH
Confidence            43

>PRK11017 codB cytosine permease; Provisional

Probab=94.95  E-value=3  Score=38.48  Aligned_cols=77  Identities=13%  Similarity=0.064  Sum_probs=48.3

Q ss_pred             ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcC--CCc
Q 024732           95 IRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQL--PTF  172 (263)
Q Consensus        95 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~--r~l  172 (263)
                      .++.-+.|..||+ +|.++..+...+...|=........++.++.+..       .+...+.+++.++..+.+..  |.+
T Consensus        71 ~~~~v~sR~~FG~-~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-------~~~~~~~~i~~~l~~~~~~~G~~~i  142 (404)
T PRK11017         71 LSTHLLARFSFGE-KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-------LDINLLIVLSGLLMTVTAYFGISAL  142 (404)
T ss_pred             cCHHHHHHHHhch-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999 5988888877777777666666666666665532       11122345555555555543  344


Q ss_pred             chhhHHH
Q 024732          173 HSLRHIN  179 (263)
Q Consensus       173 ~~l~~~S  179 (263)
                      +++.+++
T Consensus       143 ~~~~~~~  149 (404)
T PRK11017        143 TILSRIA  149 (404)
T ss_pred             HHHHHHH
Confidence            4444443

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=94.40  E-value=1.7  Score=39.92  Aligned_cols=77  Identities=13%  Similarity=0.249  Sum_probs=57.3

Q ss_pred             cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchh
Q 024732           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (263)
Q Consensus        96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l  175 (263)
                      -..+++++.+|+ +|+.+..+.+.+.|++++++.+...+|.++++.+      ..+...|.++..++.+-++.. .++++
T Consensus       256 ~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~------k~~y~~~v~~~~l~s~~ia~~-Gl~~I  327 (378)
T TIGR00796       256 ILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP------KLSYKTWVIVFTLFSFIVANL-GLTQI  327 (378)
T ss_pred             HHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHh-CHHHH
Confidence            678899999999 6999999999999999999999999999888753      145555665555554444433 45544


Q ss_pred             hHHHH
Q 024732          176 RHINL  180 (263)
Q Consensus       176 ~~~S~  180 (263)
                      -..+.
T Consensus       328 i~~~~  332 (378)
T TIGR00796       328 ISISI  332 (378)
T ss_pred             HHHHH
Confidence            44443

transmembrane helical spanners.

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=94.37  E-value=0.61  Score=43.38  Aligned_cols=112  Identities=12%  Similarity=0.041  Sum_probs=60.9

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLPYVFRGL--GWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~--G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      +|+.++++-....+...+....+.+-......  ++.-+++..++-.++..--.-+......+   .|   .++.-++|.
T Consensus         6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r---~G---l~~~v~sR~   79 (440)
T PF02133_consen    6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR---TG---LPTMVLSRA   79 (440)
T ss_dssp             G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC---C------HHHHTTT
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc---cC---CCchhcchh
Confidence            35555555554444444444433333333222  33333333333333332222233333222   33   378999999


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDL  144 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~  144 (263)
                      .||. +|..+..+...+...|-...-..+.++.+..+....
T Consensus        80 ~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~  119 (440)
T PF02133_consen   80 SFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII  119 (440)
T ss_dssp             TS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999 598988988888888888888889999999887654

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>PRK09395 actP acetate permease; Provisional

Probab=94.00  E-value=6.2  Score=38.04  Aligned_cols=145  Identities=13%  Similarity=0.158  Sum_probs=83.4

Q ss_pred             cccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      ..|+-++|...+.+..+.++ ...++.|-...+.|+.. ........+.......++.+-.++   .+  ..|+.|.-+.
T Consensus        67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~---~g--~~T~~d~l~~  140 (551)
T PRK09395         67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN---LG--KYTFADVASY  140 (551)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh---CC--CccHHHHHHH
Confidence            45777778788888888777 56789998888889742 222222221112222333333332   33  3599999888


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      =||++..|.+..+...+..+......+.-.+..++.++.       .+...-+++..+++.-.+..-=++...++-.+=
T Consensus       141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-------i~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ  212 (551)
T PRK09395        141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-------LNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIK  212 (551)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            888544667666655554445455555556666666542       223333445555555556666666666666543

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=93.85  E-value=6.6  Score=37.85  Aligned_cols=145  Identities=12%  Similarity=0.178  Sum_probs=82.9

Q ss_pred             cccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      ..|+.+++...+.+..+.++ +..++.|-...+.|+- +........+-.....+++.+-.++   .+.  .|.+|.-++
T Consensus        65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g~~~~~~i~~~~~a~~lrr---~g~--~T~~d~l~~  138 (549)
T TIGR02711        65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLGFLVGWPIILFLIAERLRN---LGR--YTFADVASY  138 (549)
T ss_pred             eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH---cCC--ccHHHHHHH
Confidence            35667777777777777666 6789999888888863 2222221111111223334443332   333  499998887


Q ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      =||.|.-|.+..+...+..+.-....+.-.+..++.++.       .+...-+++..+++.-.+..--++...++-.+=
T Consensus       139 Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ  210 (549)
T TIGR02711       139 RLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-------LNYHVAVVLVGILMVMYVLFGGMLATTWVQIIK  210 (549)
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            787544566666555555555555566666766666642       222322445555555556666666666666553

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=92.90  E-value=1.7  Score=40.52  Aligned_cols=76  Identities=14%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchh
Q 024732           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (263)
Q Consensus        96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l  175 (263)
                      -..+++++.+|+ .|..+..+.+.+-|+-++++-+...+|.+++.++      ..+...|.+++.++-+.++-. .+++.
T Consensus       262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~------kisY~~~v~i~~i~S~~ian~-Gl~~I  333 (427)
T PF05525_consen  262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP------KISYKVWVIIFTIFSFIIANL-GLDQI  333 (427)
T ss_pred             HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccChHHHHHHHHHHHHHHHHh-CHHHH
Confidence            577789999999 6999999999999999999999999999999874      344555666666665555543 33433


Q ss_pred             hHHH
Q 024732          176 RHIN  179 (263)
Q Consensus       176 ~~~S  179 (263)
                      -..|
T Consensus       334 i~~s  337 (427)
T PF05525_consen  334 IKIS  337 (427)
T ss_pred             HHHH
Confidence            3333

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=92.28  E-value=11  Score=35.93  Aligned_cols=144  Identities=9%  Similarity=0.056  Sum_probs=95.7

Q ss_pred             ccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHHccccccccCcccccHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLT---VMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELA  101 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~---~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~  101 (263)
                      .|+-+.+-..+....+..+ .-.+++|-.....|+..-.+...   +..+...+-+.-+.+..++   .+  ..|.+|.-
T Consensus        37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~~--~~T~~d~l  111 (493)
T COG0591          37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA---RG--ATTIPDFL  111 (493)
T ss_pred             CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC--CccHHHHH
Confidence            3554445666777777777 88999999999899754333333   3333444445555555532   33  45999999


Q ss_pred             HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH
Q 024732          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLV  181 (263)
Q Consensus       102 ~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~  181 (263)
                      ++=||.++.|.+..+...+..+.-+...+..+++.++..+.       .+...-+++...++...+.+--++...++..+
T Consensus       112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-------i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i  184 (493)
T COG0591         112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-------ISYVTGILIGALIVALYTFLGGLRAVVWTDFI  184 (493)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            99999437889999999999999999999999988866553       22222233444555555566666666666655

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=90.22  E-value=16  Score=34.22  Aligned_cols=82  Identities=18%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhh--cCCCcchh
Q 024732           98 RELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLS--QLPTFHSL  175 (263)
Q Consensus        98 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~--~~r~l~~l  175 (263)
                      -.++|..||. +|.++..+.+.+++.|-...-.+..++....       ....+..+++++.++++...+  =.|-++.+
T Consensus        84 mi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~-------~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l  155 (442)
T COG1457          84 MILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGS-------GTGLPVWAGILIIGVLMTLVTIFGYRALHKL  155 (442)
T ss_pred             heeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhcccccc-------CCCCcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3467889999 6999999999999999999999998887211       123455666666665544444  34556666


Q ss_pred             hHHHHHHHHHHH
Q 024732          176 RHINLVSLLLSL  187 (263)
Q Consensus       176 ~~~S~~~~~~~~  187 (263)
                      .+.+..-....+
T Consensus       156 ~~~a~~~~~~lf  167 (442)
T COG1457         156 ERIAVPLLLLLF  167 (442)
T ss_pred             HHHHHHHHHHHH
Confidence            666665555333

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=89.55  E-value=21  Score=34.46  Aligned_cols=146  Identities=10%  Similarity=0.046  Sum_probs=84.7

Q ss_pred             ccccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732           24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      .-.|+-+||...+.+..+.++ ...++.|-...+.|+-. ................++.+-.++   .+  ..|-.|.-+
T Consensus        29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr---~~--~~T~~e~l~  102 (552)
T TIGR03648        29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRK---FG--KYTVPDFIG  102 (552)
T ss_pred             eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHH---CC--CccHHHHHH
Confidence            345778889888888888776 56788997777788632 212111111112233455554444   33  347778777


Q ss_pred             HHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          103 DVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       103 ~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      +=||++..|.+..+...+..+......+...+..++.+..       .+...-+++..++.+-.+..--++...+.-.+=
T Consensus       103 ~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ  175 (552)
T TIGR03648       103 DRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ  175 (552)
T ss_pred             HHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            7788544566666666555555555556666666666542       223333444555555556665666666665554

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=88.96  E-value=9.6  Score=36.44  Aligned_cols=77  Identities=12%  Similarity=0.093  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhH
Q 024732           31 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWM  110 (263)
Q Consensus        31 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g  110 (263)
                      .++..|.+....-|.- .+|.+.....|-..-.-..++.+.+..-.+.=|.|.+-..|..|.   -|--.+..+ |+||+
T Consensus        55 ~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg---Ly~waa~la-p~k~~  129 (550)
T KOG1289|consen   55 IFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG---LYFWAAVLA-PPKYG  129 (550)
T ss_pred             HHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc---HHHHHHHhc-Ccchh
Confidence            3445555555544421 255666665553322223445555666666777777666654443   354444443 55566


Q ss_pred             HH
Q 024732          111 FY  112 (263)
Q Consensus       111 ~~  112 (263)
                      +.
T Consensus       130 ~~  131 (550)
T KOG1289|consen  130 PF  131 (550)
T ss_pred             hH
Confidence            44

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=88.03  E-value=9.4  Score=35.72  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchh
Q 024732           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (263)
Q Consensus        96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l  175 (263)
                      =.....++.+|+ +|+.+..+.+.+-|+-++++-....++.+++.++       .+...|..+..++.++++.. .++++
T Consensus       266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-------isY~~~v~i~~l~S~~lSn~-G~~~I  336 (439)
T PRK15433        266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-------LSYRTLVFILGGFSMVVSNL-GLSQL  336 (439)
T ss_pred             HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHHHHHHh-HHHHH
Confidence            345568889999 7999999999999999999999999999888752       45566667777777777755 34444


Q ss_pred             hHHHH
Q 024732          176 RHINL  180 (263)
Q Consensus       176 ~~~S~  180 (263)
                      -..+.
T Consensus       337 I~~s~  341 (439)
T PRK15433        337 IQISV  341 (439)
T ss_pred             HHHHH
Confidence            43333

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=87.92  E-value=19  Score=33.39  Aligned_cols=77  Identities=13%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             cHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchh
Q 024732           96 RFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSL  175 (263)
Q Consensus        96 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l  175 (263)
                      =..+..++.||+ .|+.+...++.+-|+-++++-+...+|..++..+.      .+...|..++.++-+.++-. .++++
T Consensus       264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~------~SY~~~v~if~i~sflvan~-GL~~I  335 (431)
T COG1114         264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK------LSYKTWVIIFTLISFLVANL-GLEQI  335 (431)
T ss_pred             HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHh-hHHHH
Confidence            467778999999 69999999999999999999999999999988753      34555666666665555543 34444


Q ss_pred             hHHHH
Q 024732          176 RHINL  180 (263)
Q Consensus       176 ~~~S~  180 (263)
                      -..|.
T Consensus       336 i~isv  340 (431)
T COG1114         336 IKISV  340 (431)
T ss_pred             HHHHH
Confidence            44443

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=87.70  E-value=22  Score=32.59  Aligned_cols=71  Identities=14%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             HHHhhhhhhhhhHHHHH-HHhhC--hhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHHhCchhHHHH
Q 024732           37 HLTTAIVGPTILTLPYV-FRGLG--WGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYF  113 (263)
Q Consensus        37 ~l~~~~iG~GiL~LP~a-f~~~G--~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~  113 (263)
                      -++.-.+|+|.|-.|-. -.+.|  |..+.+..++.++..-..+..    +--  +.| .  +|.++.++ +||+++ .+
T Consensus         3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~--~~g-G--~~~~l~~~-~g~~f~-~l   71 (378)
T TIGR00796         3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALA--LVG-G--GYDSLSAR-IGKVFG-IL   71 (378)
T ss_pred             HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eee--ecC-C--CHHHHHHH-hChHHH-HH
Confidence            45667799999999843 34444  556666655555554443333    221  122 2  79999887 666555 43


Q ss_pred             HHHHH
Q 024732          114 VIFIQ  118 (263)
Q Consensus       114 ~~~~~  118 (263)
                      ..+.+
T Consensus        72 f~~~~   76 (378)
T TIGR00796        72 FTVIL   76 (378)
T ss_pred             HHHHH
Confidence            34433

transmembrane helical spanners.

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=81.49  E-value=50  Score=31.39  Aligned_cols=152  Identities=7%  Similarity=-0.004  Sum_probs=79.3

Q ss_pred             ccccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732           24 VLESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      ...|+-+++...+.+..+.++ .-.++.|-...+.|+-. ....+...+.......++.+-.+...+.+.+..|.+|.-+
T Consensus        37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~  115 (502)
T PRK15419         37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT  115 (502)
T ss_pred             eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence            345777888888888877777 45578998888889743 1111111111111112221111100000112348888888


Q ss_pred             HHhCch--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHH
Q 024732          103 DVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL  180 (263)
Q Consensus       103 ~~~G~~--~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~  180 (263)
                      +=||++  +-+.+..+...+....-+..-+...+..++.++.       .+....+++..++++..+..-=++...++-.
T Consensus       116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-------i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~  188 (502)
T PRK15419        116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-------MSYETALWAGAAATILYTFIGGFLAVSWTDT  188 (502)
T ss_pred             HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            888862  2333444444444444344444445666655542       2333334555566666667766777777666


Q ss_pred             HHH
Q 024732          181 VSL  183 (263)
Q Consensus       181 ~~~  183 (263)
                      +=.
T Consensus       189 iQ~  191 (502)
T PRK15419        189 VQA  191 (502)
T ss_pred             HHH
Confidence            544

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=80.22  E-value=54  Score=31.00  Aligned_cols=152  Identities=8%  Similarity=0.098  Sum_probs=79.6

Q ss_pred             ccccCchHHHHHHHHHhhhhhh-hhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHH
Q 024732           24 VLESKGEWWHAGFHLTTAIVGP-TILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAA  102 (263)
Q Consensus        24 ~~~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~  102 (263)
                      .-.|+-+|+-..+.+..+.+++ -.++.|-...+.|+.. ........+.......++.+-.++..+.+.+..|-.|.-+
T Consensus        33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~  111 (487)
T TIGR02121        33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE  111 (487)
T ss_pred             eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence            3457778888888888877764 4678997777788743 2222222222233334443322211000122458889888


Q ss_pred             HHhCch--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHH
Q 024732          103 DVLGSG--WMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINL  180 (263)
Q Consensus       103 ~~~G~~--~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~  180 (263)
                      .=||++  .-+.+..+...+.........+...+..++.++.       .+...-+++..++..-.+..--++...++-.
T Consensus       112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-------i~~~~~iii~~~i~~~Yt~~GGl~av~~TD~  184 (487)
T TIGR02121       112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-------LDYKTGLLIGALIIVIYTFFGGFLAVSWTDF  184 (487)
T ss_pred             HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            889852  2233333333333333334444455666655542       2233334445555555566666666666665


Q ss_pred             HHH
Q 024732          181 VSL  183 (263)
Q Consensus       181 ~~~  183 (263)
                      +=.
T Consensus       185 iQ~  187 (487)
T TIGR02121       185 VQG  187 (487)
T ss_pred             HHH
Confidence            543

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.21
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.83
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.39
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	98.03
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	90.85
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	88.67

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.21  E-value=1.4e-09  Score=99.28  Aligned_cols=217  Identities=12%  Similarity=-0.033  Sum_probs=132.4

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      .+|+-++++.....+.+++|+|++.+|...++.|. .+.+..++.+++....+..+.|...+.|+.|    .+.+..++.
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----g~y~~~~~~   80 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG----GSYAYARRC   80 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT----THHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CchhhHHhH
Confidence            35778899999999999999999999999999997 4788888888888888888888887755433    566677889


Q ss_pred             hCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732          105 LGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSLL  184 (263)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~~  184 (263)
                      +||.+| .+..+...+........+....++.+...++...  .......+.++.. +++-..-.+..+...++..+...
T Consensus        81 ~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~in~~g~~~~~~~~~~~~~  156 (445)
T 3l1l_A           81 FGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK--DPWVLTITCVVVL-WIFVLLNIVGPKMITRVQAVATV  156 (445)
T ss_dssp             SCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG--SHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc--ccHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHH
Confidence            999655 7778777777666777777777887776654321  1111211111111 11222223344555554443333


Q ss_pred             HHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhhh
Q 024732          185 LSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYIS  253 (263)
Q Consensus       185 ~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~~  253 (263)
                      ..+...+++++..+.....++   ...+..+....+...++.++....|+| |........+|+|||++.
T Consensus       157 ~~i~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~  223 (445)
T 3l1l_A          157 LALIPIVGIAVFGWFWFRGET---YMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRN  223 (445)
T ss_dssp             HHHHHHHHHHHTTSTTCCCCC---CCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhh---cccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccc
Confidence            222222112121111111100   000111111112346788899999999 999999999999999653

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.83  E-value=2.3e-07  Score=84.53  Aligned_cols=212  Identities=8%  Similarity=-0.034  Sum_probs=127.4

Q ss_pred             ccCchHHHHHHHHHhhhhhhhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHHH
Q 024732           26 ESKGEWWHAGFHLTTAIVGPTILTLP-YVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADV  104 (263)
Q Consensus        26 ~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~~  104 (263)
                      +|+-++++.....+.+++|+|++..| .+....|- ...+..++.+++...+...+.|.....|+.|    ..-+.+++.
T Consensus         5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G----g~y~~~~~~   79 (444)
T 3gia_A            5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA----GPIAFIHKA   79 (444)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT----THHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----cHHHhHHHH
Confidence            57789999999999999999999887 45566676 6777788888888888889999888765433    456778888


Q ss_pred             hCchh-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q 024732          105 LGSGW-MFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVSL  183 (263)
Q Consensus       105 ~G~~~-g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~~  183 (263)
                      +|++| +.. +.....+........+....++.+...++..  +........ .+...+++-..-.+..+...++..+..
T Consensus        80 ~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~in~~g~~~~~~~~~~~~  155 (444)
T 3gia_A           80 IGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAP--INTFNIAIT-EIGIVAFFTALNFFGSKAVGRAEFFIV  155 (444)
T ss_dssp             HCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CCHHHHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             hCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99864 323 3444445555556667777777777665321  111111111 111112222223334555555554443


Q ss_pred             HHHHHHHHHHHHHHHhcCcCCCCCCCcccccCcchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          184 LLSLGYSFLVVGACINAGFSKNAPPKDYSLESSKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       184 ~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      ...+...+++++..+.....+     .+.. ......+.+.+.++....|+| |.......-+|+|||++
T Consensus       156 ~~~i~~~~~~ii~~~~~~~~~-----~~~~-~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r  219 (444)
T 3gia_A          156 LVKLLILGLFIFAGLITIHPS-----YVIP-DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK  219 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHCCGG-----GTSC-CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHcChh-----hcCC-CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc
Confidence            322222222222223222111     1110 011123346778888889999 99999999999999976

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.39  E-value=1.7e-05  Score=73.34  Aligned_cols=216  Identities=10%  Similarity=0.024  Sum_probs=108.0

Q ss_pred             cccCchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHccc--cccccCcccccHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVT-FYSYYLMSKVLD--HCEKAGRRHIRFRELA  101 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~i~g~i~l~~~~~~~-~~t~~lL~~~~~--~~~~~~~~~~sy~~l~  101 (263)
                      .+|+-++++.....+..++|  +.++|. .+..|.. .++..++.+++. ...+..+.|...  ..| .|    ..-..+
T Consensus         9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G----G~y~~~   79 (511)
T 4djk_A            9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG----GVFAWV   79 (511)
T ss_dssp             ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC--------CHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC----ChhhhH
Confidence            46788999999999988886  567775 5677753 333333333332 236777777777  655 44    456677


Q ss_pred             HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--ccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHH
Q 024732          102 ADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMY--SDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHIN  179 (263)
Q Consensus       102 ~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S  179 (263)
                      ++.+|+++| .+......+........+....++.+...+  +.+. ........+.++..++. -+.-.+..+...++.
T Consensus        80 ~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~-~~in~~g~~~~~~~~  156 (511)
T 4djk_A           80 SNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN-EDPITKTIAALIILWAL-ALTQFGGTKYTARIA  156 (511)
T ss_dssp             HHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT-SCSSHHHHHHHHHHHHH-HHHHHTCSSSHHHHT
T ss_pred             HhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cCcHHHHHHHHHHHHHH-HHHHHhChHHHHHHH
Confidence            888999766 777777766666666666666666665442  2111 11222222212222222 222233444444444


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhcCcCCCCCCCcccccC-cchhhhhhHHHHHHHHHHHh-ccCchHHhHHhcchhhh
Q 024732          180 LVSLLLS-LGYSFLVVGACINAGFSKNAPPKDYSLES-SKSARIFSAFTSISIIAAIF-GNGILPEIQVTSTLLYI  252 (263)
Q Consensus       180 ~~~~~~~-~~~~~iiv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~g~~~faf-~h~~i~~I~~~M~~p~~  252 (263)
                      .+..... +...++++...+.....++....+.+..+ .+.......+.++...+|+| |.......-+|+|||++
T Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k  232 (511)
T 4djk_A          157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGR  232 (511)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCccc
Confidence            3332211 11111112222221111110000011100 01111113445677889999 99999999999999976

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=98.03  E-value=0.00015  Score=67.51  Aligned_cols=171  Identities=12%  Similarity=0.002  Sum_probs=99.4

Q ss_pred             CC-CCCCCCccccccccCCCCcccccccCchHHHHHHHHHhhhhhhhhhHHHHHHHh-hChhHHHHHHHHHHHHHHHHHH
Q 024732            1 MA-QPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRG-LGWGLGFTCLTVMGFVTFYSYY   78 (263)
Q Consensus         1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~i~g~i~l~~~~~~~~~t~~   78 (263)
                      |+ ++++.|+.+|+..-+.-.   ..+|+.++++-....+...++.+...+...+.. .++..+++..++-.++...-.-
T Consensus         1 m~~~~~~~~~~~e~~~i~pvp---~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~   77 (501)
T 2jln_A            1 MNSTPIEEARSLLNPSNAPTR---YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLF   77 (501)
T ss_dssp             -------CCCBCCCSTTSCCC---GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccccCCCCCCC---hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence            44 345556655543222111   124666766666666666666665555544443 3344555544444444443333


Q ss_pred             HHHHccccccccCcccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHH
Q 024732           79 LMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAM  158 (263)
Q Consensus        79 lL~~~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i  158 (263)
                      ++.....+   .|   .+|..+.|..||+ +|..+..+...+.++|-........++.+..++....  +......+.++
T Consensus        78 l~~~~G~~---~G---l~~~v~~R~~FG~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~--g~~~~~v~~~i  148 (501)
T 2jln_A           78 FTQSAAIR---WG---INFTVAARMPFGI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT--GFTNLPLWIVI  148 (501)
T ss_dssp             HHTHHHHH---HC---CCHHHHTTTTSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred             HHhHHHhh---cC---CChhhhhHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHH
Confidence            44443332   33   3799999999999 5888889888888899888888888998887764221  01113344566


Q ss_pred             HHHHHHHhhcCCCcchhhHHHHHHHH
Q 024732          159 VTVVMIVLSQLPTFHSLRHINLVSLL  184 (263)
Q Consensus       159 ~~~~~lpl~~~r~l~~l~~~S~~~~~  184 (263)
                      +.++.+++.+ .-++.++++..+...
T Consensus       149 ~~~l~~~~~~-~G~~~i~~~~~~~~p  173 (501)
T 2jln_A          149 FGAIQVVTTF-YGITFIRWMNVFASP  173 (501)
T ss_dssp             HHHHHHHHHT-THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence            6677777764 456777776666554

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=90.85  E-value=9.8  Score=35.04  Aligned_cols=146  Identities=10%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             cccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      ..|+-+|+...+.+..+.++ .-.+++|-...+.|+........ .++.-...+..+....++   .+  ..|..|.-++
T Consensus        18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~---~~--~~T~~e~l~~   91 (530)
T 3dh4_A           18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KG--IYTIPEFVEK   91 (530)
T ss_dssp             CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHH---TT--CCSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHH---cC--CccHHHHHHH
Confidence            35777888888888777776 56789998888889753211111 111111122222222232   22  4599999999


Q ss_pred             HhCchhHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTAI-NTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~~-~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      -||++ .|.+..+...+. .+..+.+-+...+..++.++.       ++...-+++..++..-.+..--++...++-.+=
T Consensus        92 Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-------i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ  163 (530)
T 3dh4_A           92 RFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG-------IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ  163 (530)
T ss_dssp             HTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred             HcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            99985 666655543322 222222233334455555432       334444455566666667777777777777665


Q ss_pred             HH
Q 024732          183 LL  184 (263)
Q Consensus       183 ~~  184 (263)
                      .+
T Consensus       164 ~~  165 (530)
T 3dh4_A          164 VF  165 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=88.67  E-value=16  Score=34.20  Aligned_cols=146  Identities=10%  Similarity=0.123  Sum_probs=74.1

Q ss_pred             cccCchHHHHHHHHHhhhhh-hhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccHHHHHHH
Q 024732           25 LESKGEWWHAGFHLTTAIVG-PTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAAD  103 (263)
Q Consensus        25 ~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~i~g~i~l~~~~~~~~~t~~lL~~~~~~~~~~~~~~~sy~~l~~~  103 (263)
                      ..|+-+++...+.+..+.++ ...+++|-...+.|+........ .++.....+..+..-.++   .+  ..|..|.-++
T Consensus        47 aGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r---~~--~~T~~e~l~~  120 (593)
T 2xq2_A           47 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE---KG--IYTIPEFVEK  120 (593)
T ss_dssp             ----CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH---TT--CCSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh---CC--CCCcHHHHHH
Confidence            34677888888888766665 55679998888889742211111 010111112222222232   33  4599999998


Q ss_pred             HhCchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhccccccccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q 024732          104 VLGSGWMFYFVIFIQTA-INTGVGIGAILLAGECLQIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLPTFHSLRHINLVS  182 (263)
Q Consensus       104 ~~G~~~g~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~lpl~~~r~l~~l~~~S~~~  182 (263)
                      =||++ .|.+..+...+ ..+.....-+...+..++.++.       ++....+++..++....+..--++...++-.+=
T Consensus       121 Rfg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-------i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ  192 (593)
T 2xq2_A          121 RFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG-------IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ  192 (593)
T ss_dssp             HTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHH
T ss_pred             HccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            89985 55555544332 2222222233334555555542       233333445555556666766677776666554


Q ss_pred             HH
Q 024732          183 LL  184 (263)
Q Consensus       183 ~~  184 (263)
                      .+
T Consensus       193 ~i  194 (593)
T 2xq2_A          193 VF  194 (593)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00