Citrus Sinensis ID: 024734

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKKNVCVHA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEcEEEEEEEcccccccccccccccccccccccccEEcHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccEEEEEEEEEEEcccccEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHEEEccccEEEEEEEEEcccccccEEEEEc
Coil and Loop (DISEMBL)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLpasllfhrsqippltlpiLSAFFLLgflgtssqffgyagiyyssptLSTALLNLVPGFTFILAIIFRVEkldwrsssslakSVGTIVLITGAFIMTyykgphllmtslppnsslqvfmpqtnwvfGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMErdlsswslkpgVRLVAVLYSVSrskkkknvcvha
Flexible Loop (DISEMBL)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLsswslkpgvRLVAVLysvsrskkkknvcvha
Low Complexity Region (SEG)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKKNVCVHA
Disordered region (IsUnstruct)
****GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYS**************
Disordered Region (DISOPRED)
*****LA*VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT**************TNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKKNVCVHA
Disordered Region (DISEMBL)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSR***********
Disordered Region (DISPRO)
*GKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS*************TNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKKNVCVHA
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKKNVCVHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
F4KHA8	370	WAT1-related protein At5g	yes	no	0.920	0.654	0.437	1e-47
Q9FL08	368	WAT1-related protein At5g	no	no	0.920	0.657	0.433	3e-47
Q94JU2	367	WAT1-related protein At3g	no	no	0.916	0.656	0.438	3e-46
F4JK59	347	WAT1-related protein At4g	no	no	0.912	0.691	0.447	8e-40
F4I5D5	375	WAT1-related protein At1g	no	no	0.916	0.642	0.368	1e-35
Q945L4	339	WAT1-related protein At5g	no	no	0.847	0.657	0.369	8e-35
F4J9A3	369	WAT1-related protein At3g	no	no	0.904	0.644	0.348	2e-34
Q9LRS5	353	WAT1-related protein At3g	no	no	0.901	0.671	0.389	4e-34
Q9SUF1	384	WAT1-related protein At4g	no	no	0.927	0.635	0.344	8e-32
Q56X95	355	WAT1-related protein At3g	no	no	0.897	0.664	0.370	1e-31

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/249 (43%), Positives = 154/249 (61%), Gaps = 7/249 (2%)

Query: 8   PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPL 66
           P   M+  EC  VG     KAA   G+S  VFVFY+   A+LVLLP SL+F RS+ +P  
Sbjct: 21  PFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLPSA 80

Query: 67  TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126
             P+    FLL  +G  S   G  GI YSSPTL++A+ NL P FTF LA+IFR+E++  R
Sbjct: 81  KTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLR 140

Query: 127 SSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS--LPPNSSLQVFMPQT----NWVFGGL 180
           SS++ AK +GTIV I+GA ++  YKGP +L  +   PP+ ++ ++   T    +W+ GGL
Sbjct: 141 SSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGL 200

Query: 181 LLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPG 240
           LLA   +  S W+I+Q  +++ +  E  VVF Y     + SA +CL  E+DL+S+ LKPG
Sbjct: 201 LLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFILKPG 260

Query: 241 VRLVAVLYS 249
           V L +V+YS
Sbjct: 261 VSLASVMYS 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/249 (43%), Positives = 154/249 (61%), Gaps = 7/249 (2%)

Query: 8   PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPL 66
           P   M   ECA VG     KAA   G+S  VFVFYS   ++L+LLP S++F RS+ +P  
Sbjct: 20  PFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRRLPAA 79

Query: 67  TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126
             P+    FLLG +G  SQ  G  GI YSSPTL++A+ NL P FTF LA+IFR+E++  R
Sbjct: 80  KSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQVRLR 139

Query: 127 SSSSLAKSVGTIVLITGAFIMTYYKGPHLL----MTSLPPNSSL--QVFMPQTNWVFGGL 180
           SS++ AK +G I+ I+GA ++  YKGP +L     T++ P  +L  Q+   +++W+ GGL
Sbjct: 140 SSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIGGL 199

Query: 181 LLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPG 240
           LLA      S W+I+Q  +++ +  E  VVFFY  F  + S  +CL  E +L+SW LKP 
Sbjct: 200 LLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWVLKPD 259

Query: 241 VRLVAVLYS 249
           + L A++YS
Sbjct: 260 ISLAAIIYS 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/244 (43%), Positives = 155/244 (63%), Gaps = 3/244 (1%)

Query: 8   PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPL 66
           PV  +++ ECA+VGL    KAA   GMS  VF+ YS   A+L+LLP+     RS+ +PP+
Sbjct: 12  PVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRTLPPM 71

Query: 67  TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126
              IL    LLG +G  S   GY GI YSSPTL++A+ NL P FTF+LA++FR+E + ++
Sbjct: 72  NFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSFK 131

Query: 127 SSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDC 186
            +SS+AK +GT+V I GAFI+T Y GP ++  S PP+ SL+      NW+ G   LAV+ 
Sbjct: 132 RTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKS-PPSVSLRSQSTNPNWILGAGFLAVEY 190

Query: 187 VFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVME-RDLSSWSLKPGVRLVA 245
                W+IVQ  I++++ AEF VV FY   V+  +A++ L  E  DL +W +KP + LV+
Sbjct: 191 FCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIALVS 250

Query: 246 VLYS 249
           ++ S
Sbjct: 251 IVCS 254

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  164 bits (414), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 111/248 (44%), Positives = 152/248 (61%), Gaps = 8/248 (3%)

Query: 3   KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ 62
           K  + P   M+  EC  VG     KAA   G S  VFVFY+   A+LVLL  SL+F RS+
Sbjct: 12  KRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSR 71

Query: 63  -IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
            +P     +    FLL  LG +S+  G  GI YSSPTLS+A+ NL P FTFILAI FR+E
Sbjct: 72  SLPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRME 131

Query: 122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLL 181
           ++  RSS++ AK +GTIV I+GA ++  YKGP LL+      +S   F  +++W+ GGLL
Sbjct: 132 QVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVA-----ASFTSF--ESSWIIGGLL 184

Query: 182 LAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGV 241
           L +  +  S WFI+Q  I++ +  E  VVF Y     + S  +CL++E+DL+SW LKPG 
Sbjct: 185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGF 244

Query: 242 RLVAVLYS 249
            L +V+YS
Sbjct: 245 SLASVIYS 252

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 139/255 (54%), Gaps = 14/255 (5%)

Query: 6   LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP 65
           L P + M + E   + L    K A++ GMS  VFV Y+ AF S++LLP S LFHR++   
Sbjct: 10  LVPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTE 69

Query: 66  LTL---PILSAFFLLGFLGTSS-QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
            ++   P+L   F LGF G    Q   + G+ +SSP +  A+   +P F+F+L+II    
Sbjct: 70  QSIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRS 129

Query: 122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL-MTSLPPNSSLQVFMPQ-------- 172
           KLDWR++S+ AK +GTIV ++GAF+   YKGP +   +S  PN  L+  +P+        
Sbjct: 130 KLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKS-VPKLLVYYNLP 188

Query: 173 TNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDL 232
            NW  G + LAV     S + +VQ   +KK+     V  FY     IQ  +  L MERDL
Sbjct: 189 DNWFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERDL 248

Query: 233 SSWSLKPGVRLVAVL 247
           S+W ++P   L  ++
Sbjct: 249 SAWKIQPNFDLYLII 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  147 bits (371), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 141/238 (59%), Gaps = 15/238 (6%)

Query: 12  MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
           M++ E ++VG+    KAA S G+S  V + YS  F SL+LLP +    RS+ +PPLT  I
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query: 71  LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
           L    +LG + ++ Q  GY GI YSSPTLS+A+ N+ P FTFILA++FR+E +     SS
Sbjct: 77  LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query: 131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTS 190
           +AK +GTI+ I GA ++T Y GP +LM+S             ++W+ GG LLA+  +  S
Sbjct: 137 VAKVLGTILSIIGALVVTLYHGP-MLMSS------------HSDWIIGGGLLALQYILVS 183

Query: 191 AWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDL-SSWSLKPGVRLVAVL 247
             ++V A  + ++ +  +V   +   +A+  A + L+ E+D   +W ++  + L+ V+
Sbjct: 184 VSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVV 241

Arabidopsis thaliana (taxid: 3702)

>sp|F4J9A3|WTR26_ARATH WAT1-related protein At3g53210 OS=Arabidopsis thaliana GN=At3g53210 PE=2 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 134/247 (54%), Gaps = 9/247 (3%)

Query: 10  IGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLP 69
           I M++ +  + G     + A++ G+S LVF  Y    A  VL P++    + + P + + 
Sbjct: 12  IAMVVFQTGYAGNHVIMRYALNLGVSKLVFPLYRTIVAFSVLAPSAYFLEKKERPAMKIS 71

Query: 70  ILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSS 128
            L  FFLLG +G T +Q F   G+  +SPT ++A  N+VP  +F++A +  +EK++W+  
Sbjct: 72  FLIQFFLLGLVGITLNQGFYIFGLDNTSPTFASATENVVPAVSFLMAALLGIEKVEWKRK 131

Query: 129 SSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQT------NWVFGGLLL 182
             +AK VGTIV + G+ ++T YKGP +   SL  N   Q   P+       NW  G L L
Sbjct: 132 DGIAKVVGTIVSVAGSLVITLYKGPTIYQPSL--NIVNQTIKPEEAEEENKNWTLGCLCL 189

Query: 183 AVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVR 242
              C+  S+W ++Q+ +LKK+ A F  V + CFF  IQ   +    ERDL  W +  G  
Sbjct: 190 MGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERDLERWKIISGGE 249

Query: 243 LVAVLYS 249
           L A+LY+
Sbjct: 250 LYALLYT 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 147/244 (60%), Gaps = 7/244 (2%)

Query: 11  GMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLP 69
            M+  E   VG+    K A S G++   F+ YS   ASL+LLP+     RS+ +PPL+L 
Sbjct: 17  AMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLS 76

Query: 70  ILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSS 129
           ILS   LLG LG+     GY GI YSSPTL++A+ N+ P  TFILAIIFR+EK+ ++  S
Sbjct: 77  ILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ-----VFMPQTNWVFGGLLLAV 184
           S+AK +GTI+ + GA ++  Y GP + + S PP  + +     +    ++W+ GG LL +
Sbjct: 137 SVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 DCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSS-WSLKPGVRL 243
             +F S  FI+QA I+  + A F V F Y   V+I ++++ LV+E++  S W ++  + L
Sbjct: 197 RDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITL 256

Query: 244 VAVL 247
           + ++
Sbjct: 257 ITIV 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  137 bits (345), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 6/250 (2%)

Query: 6   LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP 65
           L P + M+  +    G      A ++ G +  V + Y    A+LVL P +L+F R   P 
Sbjct: 11  LRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRPK 70

Query: 66  LTLPILSAFFLLGFLGTS-SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLD 124
           +TL +L     LGFL     Q FGY G+  +S T ++A++N++P  TFI+A I R+EK++
Sbjct: 71  MTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVN 130

Query: 125 WRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ-----VFMPQTNWVFGG 179
                S AK +GT+V + GA +MT YKGP + +    PN   Q           NWV G 
Sbjct: 131 IAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGT 190

Query: 180 LLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239
           LL+ + CV  S ++++Q+  +K + A+  +    C   A+QS  + LV+ER  S W++  
Sbjct: 191 LLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSGWAVGW 250

Query: 240 GVRLVAVLYS 249
             RL A LY+
Sbjct: 251 DARLFAPLYT 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 141/243 (58%), Gaps = 7/243 (2%)

Query: 12  MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLL-FHRSQIPPLTLPI 70
           M+  E  +V +    KAA S G+++  F+ YS    S+VLLP+ +  +    +P L+L I
Sbjct: 17  MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRSLPSLSLSI 76

Query: 71  LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
           L    +LG LG++    G+ GI YS+PTL++A+ N+ P  TFILAIIFR+EK  ++  SS
Sbjct: 77  LCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKSS 136

Query: 131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ-----VFMPQTNWVFGGLLLAVD 185
           +AK VGTIV + GA ++  Y GP +   S PP   L+     +    ++W+ GG LLA+ 
Sbjct: 137 VAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIGGCLLAIK 196

Query: 186 CVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSS-WSLKPGVRLV 244
                  FI+QA I+K + A F V FFY    +I ++++ +V E++  S W +   + LV
Sbjct: 197 DTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWIIHFDITLV 256

Query: 245 AVL 247
            ++
Sbjct: 257 CIV 259

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
224099697	355	predicted protein [Populus trichocarpa]	0.946	0.701	0.622	3e-82
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.927	0.699	0.653	5e-82
224057230	355	predicted protein [Populus trichocarpa]	0.935	0.692	0.636	7e-80
359473421	347	PREDICTED: auxin-induced protein 5NG4 [V	0.942	0.714	0.648	2e-78
296086518	356	unnamed protein product [Vitis vinifera]	0.942	0.696	0.648	2e-78
357463769	345	Auxin-induced protein 5NG4 [Medicago tru	0.942	0.718	0.608	6e-78
356518605	350	PREDICTED: auxin-induced protein 5NG4-li	0.942	0.708	0.624	7e-77
224073013	339	predicted protein [Populus trichocarpa]	0.935	0.725	0.62	8e-75
147778659	335	hypothetical protein VITISV_034106 [Viti	0.863	0.677	0.604	4e-73
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.942	0.716	0.542	4e-64

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/254 (62%), Positives = 183/254 (72%), Gaps = 5/254 (1%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG    AP +GM+MAECA VGLM   KAAMSDGM+N +FV YS A ASL+LLP+S   HR
Sbjct: 1   MGLKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHR 60

Query: 61  SQIPPLTLPILSAFFLLGFLGTS-----SQFFGYAGIYYSSPTLSTALLNLVPGFTFILA 115
           S+ PPLT PIL  FFLLG  G +        FGYAGI  SS TL TA+LNL+PG TFILA
Sbjct: 61  SERPPLTFPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILA 120

Query: 116 IIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNW 175
           + FR+EKLDW+SSS+L KS GTIV + GAFI+ YYKGP LLM     N   ++   Q NW
Sbjct: 121 VAFRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHELLSQQQNW 180

Query: 176 VFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSW 235
           + GGLLLAVDCV  SAW I+QA ILKK+ AE IVVFFYCF V I S I+CL MERD  +W
Sbjct: 181 IIGGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAW 240

Query: 236 SLKPGVRLVAVLYS 249
           SLKP VR +AV+YS
Sbjct: 241 SLKPTVRWIAVVYS 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 162/248 (65%), Positives = 193/248 (77%), Gaps = 4/248 (1%)

Query: 3   KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ 62
           KV L P +GM++AECA VGLM   K AMS GMS+ +FV YS A ASL+LLP SLL  R++
Sbjct: 4   KVAL-PFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRTE 62

Query: 63  IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEK 122
            PPLT  I+  FFLLG  G  +QFFGYAGI  SSPTL TA+LNLVPG TFILA+ FR+EK
Sbjct: 63  RPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRMEK 122

Query: 123 LDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT-SLPPNSSLQVFMPQTNWVFGGLL 181
           LD R+SSSLAKS+GTI+ + GAFI+TYYKGP +L+T SL  NSS Q+    +NW+ GGLL
Sbjct: 123 LDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVLLTPSL--NSSHQLLTQPSNWIIGGLL 180

Query: 182 LAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGV 241
           LA DCV TSAW I+QA ILK + AE I+VFFYCFFV I SAI+CLV+ERD S+WSL P +
Sbjct: 181 LAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLIPNI 240

Query: 242 RLVAVLYS 249
           RLV+VLYS
Sbjct: 241 RLVSVLYS 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 159/250 (63%), Positives = 192/250 (76%), Gaps = 4/250 (1%)

Query: 3   KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRS- 61
           KV + P++GM+MAECA  G M  GKAAMS+GMS+ VFV YS A A L+LLP+S LFHRS 
Sbjct: 4   KVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFHRSS 63

Query: 62  QIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
           + PPLTL I+S FFLLG  G   Q F YAGI  SSPTL TA+LNLVPG TFILAIIFR+E
Sbjct: 64  ERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIFRME 123

Query: 122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPP--NSSLQVFMPQTNWVFGG 179
            +DW+S S+LAKS+GTIV I GAFI+T YKGP LL+ +LP    SS QV + Q+NWV GG
Sbjct: 124 NVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGP-LLLKALPSVTKSSHQVLLQQSNWVLGG 182

Query: 180 LLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239
           LL+AVDC   S+W IVQA ILKK+SA+ IVVFF+ FF  I S+I+ +VMERD S+WSL  
Sbjct: 183 LLMAVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSLNS 242

Query: 240 GVRLVAVLYS 249
            +RL+AVL+S
Sbjct: 243 NIRLIAVLFS 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473421|ref|XP_002266928.2| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 162/250 (64%), Positives = 190/250 (76%), Gaps = 2/250 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG  G A   GM+MAE A VGLM A KAA+S GM NLVF+ YS   ASL+LLP+ LLFHR
Sbjct: 1   MGMKGAAAYAGMVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLLFHR 60

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
           S  P LT  +LS FFLL  LG  +Q FGYAGI YSS TL TA+LNLVPGFTFILAIIFR+
Sbjct: 61  SPRPQLTFSLLSGFFLLALLGFFAQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRM 120

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFM-PQTNWVFGG 179
           E+LDWR  SS+AKS+GT+V I GAFI+T+YKG  +LMT  P N   Q+F+  Q+NWVFGG
Sbjct: 121 ERLDWR-GSSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGG 179

Query: 180 LLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239
           LLLA DCV +SAW I+QASILKK+ AE I+ F+YCFFVAIQSA   L+MER   +WSLKP
Sbjct: 180 LLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKP 239

Query: 240 GVRLVAVLYS 249
             R +AV+YS
Sbjct: 240 STRFIAVMYS 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 162/250 (64%), Positives = 190/250 (76%), Gaps = 2/250 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG  G A   GM+MAE A VGLM A KAA+S GM NLVF+ YS   ASL+LLP+ LLFHR
Sbjct: 1   MGMKGAAAYAGMVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLLFHR 60

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
           S  P LT  +LS FFLL  LG  +Q FGYAGI YSS TL TA+LNLVPGFTFILAIIFR+
Sbjct: 61  SPRPQLTFSLLSGFFLLALLGFFAQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRM 120

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFM-PQTNWVFGG 179
           E+LDWR  SS+AKS+GT+V I GAFI+T+YKG  +LMT  P N   Q+F+  Q+NWVFGG
Sbjct: 121 ERLDWR-GSSMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGG 179

Query: 180 LLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239
           LLLA DCV +SAW I+QASILKK+ AE I+ F+YCFFVAIQSA   L+MER   +WSLKP
Sbjct: 180 LLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKP 239

Query: 240 GVRLVAVLYS 249
             R +AV+YS
Sbjct: 240 STRFIAVMYS 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463769|ref|XP_003602166.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355491214|gb|AES72417.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 152/250 (60%), Positives = 188/250 (75%), Gaps = 2/250 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MGKV + P +GM++AEC  V L+   K  MS GM++ +F+FYS   A+LVLLP+S   HR
Sbjct: 1   MGKVTV-PFVGMIIAECIQVALIILSKQVMSQGMTSFIFIFYSNTIAALVLLPSSFFIHR 59

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
            Q PP+T   LS FF+LG LG  +Q FGYAGI YSS TL+TA+LNLVPGFTFILA++FR+
Sbjct: 60  FQRPPITFSTLSGFFILGLLGYLAQVFGYAGINYSSSTLATAMLNLVPGFTFILAVLFRM 119

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ-VFMPQTNWVFGG 179
           E+LDWRS SSLAKS+GTIV I GAFI T YKG  LL    P N S Q +F   ++W+ GG
Sbjct: 120 EELDWRSPSSLAKSLGTIVSIAGAFIATLYKGAALLKGPSPANFSQQPLFSQDSDWILGG 179

Query: 180 LLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239
           L LA DCV  S++ IVQASILKK+ A  IVVFFYCFFVAI SA+ CL +ERD+S+WSL+P
Sbjct: 180 LFLAADCVMASSFTIVQASILKKYPAGLIVVFFYCFFVAILSAVTCLAVERDISAWSLEP 239

Query: 240 GVRLVAVLYS 249
            +RL++VLYS
Sbjct: 240 KLRLLSVLYS 249

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518605|ref|XP_003527969.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  293 bits (749), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 156/250 (62%), Positives = 191/250 (76%), Gaps = 2/250 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MGK+ L P +GM+MAE A VGL+   K  M+ GM+N +F+FYS +  +L+LLP SLL HR
Sbjct: 1   MGKLTL-PFVGMIMAEFAQVGLIILSKQVMAQGMTNFIFIFYSNSIGALLLLPISLLIHR 59

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
            + PP+T   L  FFLL  LG  +Q FGYAGIYY S TLST++LNLVPGFTFILA++FR+
Sbjct: 60  FERPPITFSTLCGFFLLALLGYLAQAFGYAGIYYGSATLSTSILNLVPGFTFILAVLFRM 119

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQ-TNWVFGG 179
           EKLDWR  SSLAK +GTIV I GAFI+T YKGP LLM     N+S Q  + + +NW+  G
Sbjct: 120 EKLDWRKLSSLAKLLGTIVSIAGAFIVTLYKGPALLMGVSSANTSQQPLLSEDSNWILAG 179

Query: 180 LLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239
           L LA DCV  SA+ IVQASILKK+ AE IVVFFYCFFVAIQSA+ CLV+ERD+S+WSL+P
Sbjct: 180 LFLAADCVMASAYIIVQASILKKYPAELIVVFFYCFFVAIQSAVTCLVVERDISAWSLEP 239

Query: 240 GVRLVAVLYS 249
            +RL+AVLYS
Sbjct: 240 KLRLLAVLYS 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073013|ref|XP_002303950.1| predicted protein [Populus trichocarpa] gi|222841382|gb|EEE78929.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (731), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 155/250 (62%), Positives = 190/250 (76%), Gaps = 4/250 (1%)

Query: 3   KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ 62
           KV + P++GM+MAECA  G M AGKAAMS+GMS+ VFV YS   AS++LLP+SL+FHR Q
Sbjct: 4   KVAVLPIVGMIMAECAQAGRMIAGKAAMSNGMSSFVFVLYSNTIASIILLPSSLIFHRPQ 63

Query: 63  I-PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
             PPLTL I+  FFLLG  G   Q FGYAGI  SSP L TA+LN VPG TF+LA+IFR+E
Sbjct: 64  ERPPLTLSIVFGFFLLGLFGCLGQSFGYAGINLSSPALGTAMLNTVPGLTFVLAVIFRME 123

Query: 122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLP--PNSSLQVFMPQTNWVFGG 179
           K+D RS S+LAKS+GTI+ + GAF++TYYKGP LL+ +LP   NSS QV    +NWV GG
Sbjct: 124 KVDCRSYSTLAKSMGTIISMGGAFVVTYYKGP-LLLKALPSASNSSHQVLSQHSNWVLGG 182

Query: 180 LLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239
           LLLAVDC   S+W IVQA ILKK+ A+ IVVFFY FF  + S+I+CLVM +D S+WSLK 
Sbjct: 183 LLLAVDCTMASSWLIVQALILKKYPAKLIVVFFYFFFSTVLSSIVCLVMVKDPSAWSLKS 242

Query: 240 GVRLVAVLYS 249
             RLV+VL+S
Sbjct: 243 NTRLVSVLFS 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778659|emb|CAN71719.1| hypothetical protein VITISV_034106 [Vitis vinifera]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 151/250 (60%), Positives = 179/250 (71%), Gaps = 23/250 (9%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG  G A   GM+MAE A VGLM A KAA+S GM NLVF+ YS   ASL+LLP+ LLFH 
Sbjct: 1   MGMKGAAAYAGMVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLLFH- 59

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
                       +FF        +Q FGYAGI YSS TL TA+LNLVPGFTFILAIIFR+
Sbjct: 60  ------------SFF--------AQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRM 99

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFM-PQTNWVFGG 179
           E+LDWR SS +AKS+GT+V I GAFI+T+YKG  +LMT  P N   Q+F+  Q+NWVFGG
Sbjct: 100 ERLDWRGSS-MAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGG 158

Query: 180 LLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP 239
           LLLA DCV +SAW I+QASILKK+ AE I+ F+YCFFVAIQSA   L+MER   +WSLKP
Sbjct: 159 LLLAADCVMSSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKP 218

Query: 240 GVRLVAVLYS 249
             R +AV+YS
Sbjct: 219 STRFIAVMYS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 135/249 (54%), Positives = 177/249 (71%), Gaps = 1/249 (0%)

Query: 1   MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR 60
           MG V L P +GM++     V  M   K AMS+G+S+ V V YS A ++++LLP SLLFHR
Sbjct: 4   MGTVSL-PFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLSLLFHR 62

Query: 61  SQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRV 120
           S  PPLT  IL  FFLL  +G  +Q FGYAG+ YSSPTL +A+LNLVP FTFILA+I R+
Sbjct: 63  SPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILAVICRM 122

Query: 121 EKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGL 180
           EKL+ + SSSLAKSVG +V + GAF++T+YKGP ++ +S   +SS Q+F  Q++WV GG 
Sbjct: 123 EKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQIFSSQSHWVLGGF 182

Query: 181 LLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPG 240
           LLA + +  S W+I+QA+ILKK  A   + FFYCFF++I S  + LV ERD S+W LK  
Sbjct: 183 LLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSAWRLKLD 242

Query: 241 VRLVAVLYS 249
           V L+AVLYS
Sbjct: 243 VGLLAVLYS 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.916	0.656	0.438	1.2e-49
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.927	0.659	0.442	1.4e-48
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.912	0.691	0.447	2e-47
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.897	0.655	0.403	1.4e-41
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.897	0.668	0.395	5.9e-41
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.897	0.664	0.386	4.2e-40
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.897	0.659	0.374	2.9e-39
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.912	0.64	0.378	1.9e-37
TAIR|locus:2102028	369	UMAMIT6 "Usually multiple acid	0.904	0.644	0.348	9.2e-36
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.847	0.657	0.369	9.2e-36

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 107/244 (43%), Positives = 155/244 (63%)

Query:     8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPL 66
             PV  +++ ECA+VGL    KAA   GMS  VF+ YS   A+L+LLP+     RS+ +PP+
Sbjct:    12 PVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRTLPPM 71

Query:    67 TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR 126
                IL    LLG +G  S   GY GI YSSPTL++A+ NL P FTF+LA++FR+E + ++
Sbjct:    72 NFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSFK 131

Query:   127 SSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDC 186
              +SS+AK +GT+V I GAFI+T Y GP ++  S PP+ SL+      NW+ G   LAV+ 
Sbjct:   132 RTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKS-PPSVSLRSQSTNPNWILGAGFLAVEY 190

Query:   187 VFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVME-RDLSSWSLKPGVRLVA 245
                  W+IVQ  I++++ AEF VV FY   V+  +A++ L  E  DL +W +KP + LV+
Sbjct:   191 FCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIALVS 250

Query:   246 VLYS 249
             ++ S
Sbjct:   251 IVCS 254

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 111/251 (44%), Positives = 156/251 (62%)

Query:     6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IP 64
             + P   M+  EC  VG     KAA   G+S  VFVFY+   A+LVLLP SL+F RS+ +P
Sbjct:    19 VVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLP 78

Query:    65 PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLD 124
                 P+    FLL  +G  S   G  GI YSSPTL++A+ NL P FTF LA+IFR+E++ 
Sbjct:    79 SAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIV 138

Query:   125 WRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLM-TSL-PPNSSLQVFMPQTN----WVFG 178
              RSS++ AK +GTIV I+GA ++  YKGP +L   SL PP+ ++ ++   T+    W+ G
Sbjct:   139 LRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIG 198

Query:   179 GLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLK 238
             GLLLA   +  S W+I+Q  +++ +  E  VVF Y     + SA +CL  E+DL+S+ LK
Sbjct:   199 GLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFILK 258

Query:   239 PGVRLVAVLYS 249
             PGV L +V+YS
Sbjct:   259 PGVSLASVMYS 269

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 111/248 (44%), Positives = 152/248 (61%)

Query:     3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ 62
             K  + P   M+  EC  VG     KAA   G S  VFVFY+   A+LVLL  SL+F RS+
Sbjct:    12 KRDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSR 71

Query:    63 -IPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
              +P     +    FLL  LG +S+  G  GI YSSPTLS+A+ NL P FTFILAI FR+E
Sbjct:    72 SLPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRME 131

Query:   122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLL 181
             ++  RSS++ AK +GTIV I+GA ++  YKGP LL+ +     S   F  +++W+ GGLL
Sbjct:   132 QVMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAA-----SFTSF--ESSWIIGGLL 184

Query:   182 LAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGV 241
             L +  +  S WFI+Q  I++ +  E  VVF Y     + S  +CL++E+DL+SW LKPG 
Sbjct:   185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGF 244

Query:   242 RLVAVLYS 249
              L +V+YS
Sbjct:   245 SLASVIYS 252

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 98/243 (40%), Positives = 150/243 (61%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M++ E + VG+    K A S G++   F+ YS   ASL+LLP+    +RS  +PPL++ I
Sbjct:    21 MLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSSLPPLSVSI 80

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             LS   LLGFLG+     GY GI YSSPTL++A+ N+ P  TFILAIIFR+EK+ ++  SS
Sbjct:    81 LSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKVSFKERSS 140

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAVD 185
             LAK +GTI+ + GA ++ +Y GP + + S PP  + + F P      ++W+ GG LL + 
Sbjct:   141 LAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLIGGALLTMQ 200

Query:   186 CVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSS-WSLKPGVRLV 244
              +F S  FI+QA I+  + A F V F Y   V+I ++ + LV+E++  S W +   + L+
Sbjct:   201 GIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWIIHFDITLI 260

Query:   245 AVL 247
              ++
Sbjct:   261 TIV 263

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 96/243 (39%), Positives = 147/243 (60%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M+  E   VG+    K A S G++   F+ YS   ASL+LLP+     RS+ +PPL+L I
Sbjct:    18 MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLSI 77

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             LS   LLG LG+     GY GI YSSPTL++A+ N+ P  TFILAIIFR+EK+ ++  SS
Sbjct:    78 LSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERSS 137

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAVD 185
             +AK +GTI+ + GA ++  Y GP + + S PP  + +   P      ++W+ GG LL + 
Sbjct:   138 VAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTIR 197

Query:   186 CVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSS-WSLKPGVRLV 244
              +F S  FI+QA I+  + A F V F Y   V+I ++++ LV+E++  S W ++  + L+
Sbjct:   198 DIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITLI 257

Query:   245 AVL 247
              ++
Sbjct:   258 TIV 260

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 94/243 (38%), Positives = 146/243 (60%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M+  E  +V +    KAA S G+++  F+ YS    S+VLLP+ +  +RS+ +P L+L I
Sbjct:    17 MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRSLPSLSLSI 76

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             L    +LG LG++    G+ GI YS+PTL++A+ N+ P  TFILAIIFR+EK  ++  SS
Sbjct:    77 LCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKSS 136

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL-QVFMP----QTNWVFGGLLLAVD 185
             +AK VGTIV + GA ++  Y GP +   S PP   L Q+ +P     ++W+ GG LLA+ 
Sbjct:   137 VAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIGGCLLAIK 196

Query:   186 CVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSS-WSLKPGVRLV 244
                    FI+QA I+K + A F V FFY    +I ++++ +V E++  S W +   + LV
Sbjct:   197 DTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWIIHFDITLV 256

Query:   245 AVL 247
              ++
Sbjct:   257 CIV 259

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 91/243 (37%), Positives = 149/243 (61%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M+  E + VGL    K A S G++   F+ YS   ASL+LLP+    +RS+ +PPL+  I
Sbjct:    18 MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASI 77

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             LS   LLGFLG+     G  GI YS+PTL++A+ N+VP  TFILA+IFR+EK+ ++  SS
Sbjct:    78 LSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSS 137

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAVD 185
             +AK +GTI+ + GAF++ +Y GP + + S PP  + +   P     +++W+ GG +L + 
Sbjct:   138 VAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTIQ 197

Query:   186 CVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSS-WSLKPGVRLV 244
              +F S  FI+Q  I++++   F V   Y   ++I ++++ LV+E++  S W +   + L 
Sbjct:   198 GIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWIIHFDITLF 257

Query:   245 AVL 247
              ++
Sbjct:   258 TIV 260

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 97/256 (37%), Positives = 143/256 (55%)

Query:     6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP 65
             L P + M + E   + L    K A++ GMS  VFV Y+ AF S++LLP S LFHR++   
Sbjct:    10 LVPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTE 69

Query:    66 LTL---PILSAFFLLGFLGTSS-QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVE 121
              ++   P+L   F LGF G    Q   + G+ +SSP +  A+   +P F+F+L+II    
Sbjct:    70 QSIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRS 129

Query:   122 KLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL-MTSLPPNSSLQ------VF--MPQ 172
             KLDWR++S+ AK +GTIV ++GAF+   YKGP +   +S  PN  L+      V+  +P 
Sbjct:   130 KLDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPD 189

Query:   173 TNWVFGGLLLAVDCVFTSAWF-IVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERD 231
              NW  G + LAV  VF+ + F +VQ   +KK+     V  FY     IQ  +  L MERD
Sbjct:   190 -NWFLGCIFLAV-AVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERD 247

Query:   232 LSSWSLKPGVRLVAVL 247
             LS+W ++P   L  ++
Sbjct:   248 LSAWKIQPNFDLYLII 263

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102028 UMAMIT6 "Usually multiple acids move in and out Transporters 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 86/247 (34%), Positives = 134/247 (54%)

Query:    10 IGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLP 69
             I M++ +  + G     + A++ G+S LVF  Y    A  VL P++    + + P + + 
Sbjct:    12 IAMVVFQTGYAGNHVIMRYALNLGVSKLVFPLYRTIVAFSVLAPSAYFLEKKERPAMKIS 71

Query:    70 ILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSS 128
              L  FFLLG +G T +Q F   G+  +SPT ++A  N+VP  +F++A +  +EK++W+  
Sbjct:    72 FLIQFFLLGLVGITLNQGFYIFGLDNTSPTFASATENVVPAVSFLMAALLGIEKVEWKRK 131

Query:   129 SSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQT------NWVFGGLLL 182
               +AK VGTIV + G+ ++T YKGP +   SL  N   Q   P+       NW  G L L
Sbjct:   132 DGIAKVVGTIVSVAGSLVITLYKGPTIYQPSL--NIVNQTIKPEEAEEENKNWTLGCLCL 189

Query:   183 AVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVR 242
                C+  S+W ++Q+ +LKK+ A F  V + CFF  IQ   +    ERDL  W +  G  
Sbjct:   190 MGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFFGISAYFERDLERWKIISGGE 249

Query:   243 LVAVLYS 249
             L A+LY+
Sbjct:   250 LYALLYT 256

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 88/238 (36%), Positives = 141/238 (59%)

Query:    12 MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
             M++ E ++VG+    KAA S G+S  V + YS  F SL+LLP +    RS+ +PPLT  I
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query:    71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
             L    +LG + ++ Q  GY GI YSSPTLS+A+ N+ P FTFILA++FR+E +     SS
Sbjct:    77 LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query:   131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTS 190
             +AK +GTI+ I GA ++T Y GP +LM+S             ++W+ GG LLA+  +  S
Sbjct:   137 VAKVLGTILSIIGALVVTLYHGP-MLMSS------------HSDWIIGGGLLALQYILVS 183

Query:   191 AWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDL-SSWSLKPGVRLVAVL 247
               ++V A  + ++ +  +V   +   +A+  A + L+ E+D   +W ++  + L+ V+
Sbjct:   184 VSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVV 241

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	5e-46
pfam00892	126	pfam00892, EamA, EamA-like transporter family	0.001

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  157 bits (397), Expect = 5e-46
 Identities = 95/243 (39%), Positives = 151/243 (62%), Gaps = 7/243 (2%)

Query: 12  MMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPI 70
           M+  E + VG+    K A S G++   F+ YS   ASL+LLP+    +RS+ +PPL++ I
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77

Query: 71  LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSS 130
           LS   LLGFLG+     GY GI YS+PTL++A+ N+ P  TFILAIIFR+EK+ ++  SS
Sbjct: 78  LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSS 137

Query: 131 LAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMP-----QTNWVFGGLLLAVD 185
           +AK +GTI+ + GA ++ +Y GP + + S PP  + +   P      ++W+ GG LL + 
Sbjct: 138 VAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQ 197

Query: 186 CVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSS-WSLKPGVRLV 244
            +F S  FI+QA I+ ++ A F V F Y   V+I ++++ LV+E++  S W +   + L+
Sbjct: 198 GIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLI 257

Query: 245 AVL 247
            ++
Sbjct: 258 TIV 260

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 24/113 (21%), Positives = 48/113 (42%)

Query: 30  MSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGY 89
           + + +S L F  Y    A ++L+    L  +         IL+  +L  F         +
Sbjct: 13  LLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYF 72

Query: 90  AGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLIT 142
             + Y S + ++ + +L P FT IL+++   EKL  +    +   +  ++LI 
Sbjct: 73  YALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLIL 125

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11272	292	putative DMT superfamily transporter inner membran	99.93
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.92
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.91
PRK11689	295	aromatic amino acid exporter; Provisional	99.91
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.91
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.89
PRK15430	296	putative chloramphenical resistance permease RarD;	99.89
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.84
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.8
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.79
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.75
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.72
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.65
COG2510	140	Predicted membrane protein [Function unknown]	99.63
COG2962	293	RarD Predicted permeases [General function predict	99.59
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.56
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.48
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.47
KOG2765	416	consensus Predicted membrane protein [Function unk	99.38
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.37
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.33
PRK11272	292	putative DMT superfamily transporter inner membran	99.3
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.29
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.2
PRK11689	295	aromatic amino acid exporter; Provisional	99.19
PLN00411	358	nodulin MtN21 family protein; Provisional	99.14
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.11
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.09
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.02
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.86
PRK15430	296	putative chloramphenical resistance permease RarD;	98.84
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.81
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.8
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.8
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.79
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.56
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.54
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.45
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.44
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.36
KOG2766	336	consensus Predicted membrane protein [Function unk	98.35
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.35
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.3
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.3
PRK13499	345	rhamnose-proton symporter; Provisional	98.16
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.15
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.07
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.92
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.77
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.71
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.68
COG2962	293	RarD Predicted permeases [General function predict	97.54
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.47
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.45
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.33
KOG1580	337	consensus UDP-galactose transporter related protei	97.16
KOG1581	327	consensus UDP-galactose transporter related protei	97.15
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.1
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.07
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.01
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.9
COG2076	106	EmrE Membrane transporters of cations and cationic	96.89
PRK13499	345	rhamnose-proton symporter; Provisional	96.89
PRK11431	105	multidrug efflux system protein; Provisional	96.84
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.83
KOG2765	416	consensus Predicted membrane protein [Function unk	96.68
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.65
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.45
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.09
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	95.99
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.83
KOG1580	337	consensus UDP-galactose transporter related protei	95.73
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.71
KOG1581	327	consensus UDP-galactose transporter related protei	95.69
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	95.09
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	94.71
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	94.13
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	93.57
KOG3912	372	consensus Predicted integral membrane protein [Gen	93.37
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	93.19
KOG1443	349	consensus Predicted integral membrane protein [Fun	93.06
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	92.99
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.24
KOG4831	125	consensus Unnamed protein [Function unknown]	88.69
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	88.2
COG2510	140	Predicted membrane protein [Function unknown]	88.14
KOG1582	367	consensus UDP-galactose transporter related protei	87.98
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	85.16
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	83.99
KOG1582	367	consensus UDP-galactose transporter related protei	83.68
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	82.72

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=215.99  Aligned_cols=251  Identities=36%  Similarity=0.624  Sum_probs=194.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHH
Q 024734            3 KVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRS-QIPPLTLPILSAFFLLGFLG   81 (263)
Q Consensus         3 ~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~   81 (263)
                      .++.+.++.+++..+.+++..++.|.+++.|++|..+.++|+.+|+++++++.+.++|+ ++++.++|++..+.+.|+++
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999999999999988765542 23445678888888888888


Q ss_pred             HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHH------hhhcccccccCccchhhHHHHHHHHHHHhhhccCCcc
Q 024734           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIF------RVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHL  155 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~  155 (263)
                      ..++.+++.|++|+++++++++.+++|+++.++++++      ++||++++      +++|++++++|+.++...+++..
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~  162 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRV  162 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccc
Confidence            6677899999999999999999999999999999999      59999999      99999999999998875444311


Q ss_pred             cccCCCCCCC---c--ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734          156 LMTSLPPNSS---L--QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMER  230 (263)
Q Consensus       156 ~~~~~~~~~~---~--~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  230 (263)
                      ...++.++.+   .  ++.....+...|+++.+.|+++|+.|++++|+..+++|+....++|++.++++...+.....++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0000000000   0  0011223456799999999999999999999999998745677888888888888777776654


Q ss_pred             C-CCcccccCCchhhHHhhHhhhhccccccc
Q 024734          231 D-LSSWSLKPGVRLVAVLYSVSRSKKKKNVC  260 (263)
Q Consensus       231 ~-~~~~~~~~~~~~~~l~y~gv~~t~~~~~~  260 (263)
                      + ...|........+.++|.+++ +.++|++
T Consensus       243 ~~~~~~~~~~~~~~~~i~y~~i~-t~lay~l  272 (358)
T PLN00411        243 NNPSVWIIHFDITLITIVTMAII-TSVYYVI  272 (358)
T ss_pred             CCcccceeccchHHHHHHHHHHH-HHHHHHH
Confidence            2 233332233345568898876 5578754

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.93  E-value=4.3e-24  Score=189.92  Aligned_cols=226  Identities=13%  Similarity=0.052  Sum_probs=178.2

Q ss_pred             CCCcchHH-HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 024734            1 MGKVGLAP-VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGF   79 (263)
Q Consensus         1 ~~~~~~~~-~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~   79 (263)
                      |+.+...+ .+.++...++||++++++|.+.++ +||.+++++|+.+++++++++...++++   ..++|++.+....|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~   76 (292)
T PRK11272          1 MRFRQLLPLFGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGL   76 (292)
T ss_pred             CchHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHH
Confidence            44444444 346778899999999999998775 9999999999999999988876543222   224677777788888


Q ss_pred             HH-HHHHHHHHHhh-hhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccc
Q 024734           80 LG-TSSQFFGYAGI-YYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLM  157 (263)
Q Consensus        80 ~~-~~~~~~~~~al-~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~  157 (263)
                      ++ ..++.+++++. +++++++++++.++.|+++.+++++ +|||++++      +++|++++++|+.++... +.    
T Consensus        77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~----  144 (292)
T PRK11272         77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN----  144 (292)
T ss_pred             HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc----
Confidence            87 77888999999 9999999999999999999999986 69999999      999999999999886521 10    


Q ss_pred             cCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccc
Q 024734          158 TSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSL  237 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  237 (263)
                                   . ++...|+++.++++++||.+++..||..++.  +...+.+++.++++...+.....+.+...  .
T Consensus       145 -------------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  206 (292)
T PRK11272        145 -------------L-SGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--L  206 (292)
T ss_pred             -------------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--c
Confidence                         1 1234699999999999999999999976443  46677899999988888877655433211  1


Q ss_pred             cCCchhhHHhhHhhhhccccccc
Q 024734          238 KPGVRLVAVLYSVSRSKKKKNVC  260 (263)
Q Consensus       238 ~~~~~~~~l~y~gv~~t~~~~~~  260 (263)
                      .+...|..++|+++++|.++|.+
T Consensus       207 ~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        207 PTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
Confidence            12245888999999999988864

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.92  E-value=2.3e-23  Score=185.83  Aligned_cols=220  Identities=12%  Similarity=0.088  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQF   86 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~   86 (263)
                      ..+..++++++||++++++|.+.++ +||.++.++|+.++++.++++.  +++    +.+++   .....|++. ...+.
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~~~----~~~~~---~~~~~g~~~~~~~~~   74 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--ARP----KVPLN---LLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--cCC----CCchH---HHHHHHHHHHHHHHH
Confidence            3466889999999999999998876 9999999999999887766543  111    12232   234446655 56666


Q ss_pred             HHHHhhhh-cCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCC
Q 024734           87 FGYAGIYY-SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSS  165 (263)
Q Consensus        87 ~~~~al~~-~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  165 (263)
                      +++.++++ .++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++.. ++.            
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~------------  135 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL------------  135 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC------------
Confidence            78889998 58899999999999999999999999999999      99999999999988762 111            


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--hhHHHHHHHHHHHHHHHHHHHHHccCC---CcccccCC
Q 024734          166 LQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSA--EFIVVFFYCFFVAIQSAILCLVMERDL---SSWSLKPG  240 (263)
Q Consensus       166 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~  240 (263)
                          +..+....|+++++.++++|+.+++.+||..++.++  ......++...+.+.........|++.   .++...+.
T Consensus       136 ----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (299)
T PRK11453        136 ----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDM  211 (299)
T ss_pred             ----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCH
Confidence                111223469999999999999999999998765532  234456666666655555554444321   11112222


Q ss_pred             chhhHHhhHhhhhccccccc
Q 024734          241 VRLVAVLYSVSRSKKKKNVC  260 (263)
Q Consensus       241 ~~~~~l~y~gv~~t~~~~~~  260 (263)
                      ..+..++|+|+++|+++|.+
T Consensus       212 ~~~~~l~~l~i~~t~~~~~l  231 (299)
T PRK11453        212 TTILSLMYLAFVATIVGYGI  231 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45888999999999999876

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.91  E-value=8.3e-23  Score=177.91  Aligned_cols=207  Identities=16%  Similarity=0.067  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCc
Q 024734           19 HVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSP   97 (263)
Q Consensus        19 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~   97 (263)
                      ||.+++..|...+++.||.+..+.|+..+.+.+.+....  +     .+++++......|.++ .+++.++++|++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998877999999999999998888776432  2     1344556677788888 8999999999999999


Q ss_pred             hhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHH
Q 024734           98 TLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVF  177 (263)
Q Consensus        98 ~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (263)
                      ++++++.+++|+++.+++++++|||++++      +++|+.++++|+.++.. ++                  ..++...
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~------------------~~~~~~~  128 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG------------------NLSINPA  128 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC------------------cccccHH
Confidence            99999999999999999999999999999      99999999999988752 11                  1123357


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCchhhHHhhHhhhhccc
Q 024734          178 GGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKK  256 (263)
Q Consensus       178 G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~gv~~t~~  256 (263)
                      |+.+.+.++++|+.+++..||..++.+ ++.....+++.++.+...+.....+++. ..   ....+..+++++++++.+
T Consensus       129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~  204 (260)
T TIGR00950       129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTAL  204 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887764 1345555788889888888877654332 11   223577889999999999


Q ss_pred             ccccc
Q 024734          257 KNVCV  261 (263)
Q Consensus       257 ~~~~~  261 (263)
                      +|.+.
T Consensus       205 ~~~~~  209 (260)
T TIGR00950       205 AYFLW  209 (260)
T ss_pred             HHHHH
Confidence            98764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.91  E-value=6.6e-23  Score=182.61  Aligned_cols=226  Identities=11%  Similarity=0.077  Sum_probs=158.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS   83 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (263)
                      |.++++.++.++++||++++..|.+.++ +||..+.++|+.++.++++++.   ++++.++.++    +....+.++ ..
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~~----~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFPK----RYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---cccccccccH----HHHHHHhHHHHH
Confidence            5678889999999999999999998876 9999999999999999888753   1211112222    233444555 77


Q ss_pred             HHHHHHHhhhh----cCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccC
Q 024734           84 SQFFGYAGIYY----SSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS  159 (263)
Q Consensus        84 ~~~~~~~al~~----~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  159 (263)
                      ++.+++.++++    +++++++++.++.|+++.+++++++|||++++      +++|++++++|++++... ++..... 
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~~-  145 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSLA-  145 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchhh-
Confidence            77778877765    57888899999999999999999999999999      999999999999887632 1100000 


Q ss_pred             CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccC
Q 024734          160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKP  239 (263)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  239 (263)
                           +  ..++..+...|+++.++|+++||.|++..||..++.+ +....  + ..+++...+.....+++..+  . +
T Consensus       146 -----~--~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~--~-~~~~~~l~~~~~~~~~~~~~--~-~  211 (295)
T PRK11689        146 -----E--LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF--F-ILTALALWIKYFLSPQPAMV--F-S  211 (295)
T ss_pred             -----h--hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH--H-HHHHHHHHHHHHHhcCcccc--C-C
Confidence                 0  0001112246999999999999999999999987765 55432  2 23333333333333322111  1 1


Q ss_pred             CchhhHHhhHhhhhcccccccc
Q 024734          240 GVRLVAVLYSVSRSKKKKNVCV  261 (263)
Q Consensus       240 ~~~~~~l~y~gv~~t~~~~~~~  261 (263)
                      ...+..++|.+ ++++++|.+.
T Consensus       212 ~~~~~~l~~~~-~~t~~~~~l~  232 (295)
T PRK11689        212 LPAIIKLLLAA-AAMGFGYAAW  232 (295)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHH
Confidence            23577788888 5788888653

>TIGR00688 rarD rarD protein

Probab=99.91  E-value=1.3e-22  Score=176.92  Aligned_cols=218  Identities=9%  Similarity=-0.011  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCHHH-HHHHHHHHHH
Q 024734            7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IPPLTLPI-LSAFFLLGFL   80 (263)
Q Consensus         7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~-~~~~~~~g~~   80 (263)
                      |+++.+++++++||.+++++|. .++ +||.+++++|++++.+++.++...+++++     .++.++++ +......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            6889999999999999999998 454 99999999999999988877664433211     11112222 3345556666


Q ss_pred             HHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCC
Q 024734           81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSL  160 (263)
Q Consensus        81 ~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~  160 (263)
                      ...++.+++++++++++++++++.++.|+++++++++++|||++++      +++|+.++++|++++... +        
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~-~--------  144 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL-K--------  144 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH-c--------
Confidence            6888999999999999999999999999999999999999999999      999999999999887521 1        


Q ss_pred             CCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCC
Q 024734          161 PPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPG  240 (263)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  240 (263)
                                 ++..    .+.++++++|+.|.+..||..++.  .......+ ........+... .++........+.
T Consensus       145 -----------~~~~----~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~  205 (256)
T TIGR00688       145 -----------GSLP----WEALVLAFSFTAYGLIRKALKNTD--LAGFCLET-LSLMPVAIYYLL-QTDFATVQQTNPF  205 (256)
T ss_pred             -----------CCch----HHHHHHHHHHHHHHHHHhhcCCCC--cchHHHHH-HHHHHHHHHHHH-HhccCcccccCch
Confidence                       1111    357889999999999999876432  22222211 122112211111 1111111111121


Q ss_pred             chhhHHhhHhhhhcccccccc
Q 024734          241 VRLVAVLYSVSRSKKKKNVCV  261 (263)
Q Consensus       241 ~~~~~l~y~gv~~t~~~~~~~  261 (263)
                      ..|..++++|++ |.++|.+.
T Consensus       206 ~~~~~l~~~g~~-t~i~~~l~  225 (256)
T TIGR00688       206 PIWLLLVLAGLI-TGTPLLAF  225 (256)
T ss_pred             hHHHHHHHHHHH-HHHHHHHH
Confidence            257778888876 88888763

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.89  E-value=2.6e-21  Score=172.14  Aligned_cols=219  Identities=11%  Similarity=-0.002  Sum_probs=167.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH
Q 024734            2 GKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG   81 (263)
Q Consensus         2 ~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (263)
                      |..+.+++..+++++++|+.++.++|.+.++ .||.+++++|++++.++++++...  +++  +.++|++...+..|.+.
T Consensus         7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~~--~~~~~~~~~~~~~g~~~   81 (293)
T PRK10532          7 KLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WRL--RFAKEQRLPLLFYGVSL   81 (293)
T ss_pred             ccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hhc--cCCHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999887 999999999999999988876432  111  23567777777788777


Q ss_pred             HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCC
Q 024734           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLP  161 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  161 (263)
                      ...+.+++++++|+|++.++++.++.|+++.+++    +||+.        +..++.++++|+.++.. .+.        
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~--------  140 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQ--------  140 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCC--------
Confidence            6778889999999999999999999999999887    35543        34566788999987652 121        


Q ss_pred             CCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCc
Q 024734          162 PNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGV  241 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  241 (263)
                              +.+.....|+++.++++++|+.|++..||..++.+ +... .++..++++...++....+.+. .++   ..
T Consensus       141 --------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~---~~  206 (293)
T PRK10532        141 --------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGEA-LWH---WS  206 (293)
T ss_pred             --------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCcc-cCC---HH
Confidence                    11122346999999999999999999999987775 6655 5677778877777766543211 111   12


Q ss_pred             hhhHHhhHhhhhccccccc
Q 024734          242 RLVAVLYSVSRSKKKKNVC  260 (263)
Q Consensus       242 ~~~~l~y~gv~~t~~~~~~  260 (263)
                      .+..++|+|+++|.++|.+
T Consensus       207 ~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        207 ILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3556789999999999865

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.89  E-value=2.3e-21  Score=172.77  Aligned_cols=221  Identities=10%  Similarity=0.002  Sum_probs=155.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC--C-CCCHHHHHHHHHHHHH
Q 024734            4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI--P-PLTLPILSAFFLLGFL   80 (263)
Q Consensus         4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~   80 (263)
                      ++.|+++.+++++++||.++++.|.. ++ +||.++.++|+.++.+++.++...+++++.  + ..+++++. ....+.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHH
Confidence            55689999999999999999999975 44 999999999999999888776654322111  0 11344443 3335666


Q ss_pred             H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccC
Q 024734           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS  159 (263)
Q Consensus        81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  159 (263)
                      + ..++.++++|++++|+++++++.++.|+++.+++++++|||++++      +++|++++++|++++....+       
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~-------  148 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG-------  148 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence            6 889999999999999999999999999999999999999999999      99999999999998762111       


Q ss_pred             CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHccCCCccccc
Q 024734          160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLK  238 (263)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  238 (263)
                                  + .    ..+.++++++|+.|++..||..++.. +....+.|+...+.+...+..   +.+...+. .
T Consensus       149 ------------~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~  207 (296)
T PRK15430        149 ------------S-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMG-Q  207 (296)
T ss_pred             ------------C-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCccccc-C
Confidence                        1 1    14678899999999999988754321 124444555555544432221   11111111 1


Q ss_pred             CCchhhHHhhHhhhhcccccccc
Q 024734          239 PGVRLVAVLYSVSRSKKKKNVCV  261 (263)
Q Consensus       239 ~~~~~~~l~y~gv~~t~~~~~~~  261 (263)
                      ....+..+++.+.+.+.++|.|.
T Consensus       208 ~~~~~~~~~~~~g~~t~i~~~~~  230 (296)
T PRK15430        208 NPMSLNLLLIAAGIVTTVPLLCF  230 (296)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHH
Confidence            11223344444334677887764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.84  E-value=1.1e-18  Score=155.81  Aligned_cols=180  Identities=9%  Similarity=0.041  Sum_probs=150.6

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhh
Q 024734           23 MFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTA  102 (263)
Q Consensus        23 ~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asi  102 (263)
                      .+..|.++++-.+|..+.++|+.++.+.+.+.. ..+.+++++.++|+++.....|+++..++.+.+.+++|++++.+++
T Consensus        18 ~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        18 NIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSW-SSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            356788887547799999999999988766652 1222233456788999999999999888899999999999999999


Q ss_pred             hccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHH
Q 024734          103 LLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLL  182 (263)
Q Consensus       103 l~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~  182 (263)
                      +.++.|+++.++++++++||++++      ++.|++++++|+.+..  .+                 +. +....|++++
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~-----------------~~-~~~~~G~~~~  150 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DT-----------------EL-SFNWAGFLSA  150 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CC-----------------cc-cccHHHHHHH
Confidence            999999999999999999999999      9999999999997643  11                 11 1234699999


Q ss_pred             HHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734          183 AVDCVFTSAWFIVQASILK--KFSAEFIVVFFYCFFVAIQSAILCLVMER  230 (263)
Q Consensus       183 l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  230 (263)
                      ++|+++|+.+++..||..+  +.+ +.+.+.|+...+.+..+|+....|+
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~  199 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEG  199 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999888  665 8999999999999999999887664

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.80  E-value=4.9e-18  Score=150.20  Aligned_cols=219  Identities=11%  Similarity=0.021  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 024734            9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFH-RSQIPPLTLPILSAFFLLGFLG-TSSQF   86 (263)
Q Consensus         9 ~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~~~~   86 (263)
                      ....+.++++|+...+..|...++ -++.  .+++...+.+.+.|+...+. ++.++..+++.+ .....+.++ ..++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFW-LLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhH-HHHHHHHHHHHHHHH
Confidence            456788999999999999965554 4443  47777778888887765432 222222333333 344444444 89999


Q ss_pred             HHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCc
Q 024734           87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL  166 (263)
Q Consensus        87 ~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  166 (263)
                      +++.+++++++++++.+.++.|+++.+++++++|||++++      +++|+.+++.|+.++.. ++.             
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~-------------  138 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF-------------  138 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc-------------
Confidence            9999999999999999999999999999999999999999      99999999999988762 111             


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh----HHHHHHHHHHHHHHHHHHHHHccCCCcccccCCch
Q 024734          167 QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEF----IVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVR  242 (263)
Q Consensus       167 ~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  242 (263)
                          ... ...|+.+.++++++|+.|++..|+..++.+ +.    ..+.++...++....+.....++.  .+.. ....
T Consensus       139 ----~~~-~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~  209 (281)
T TIGR03340       139 ----AQH-RRKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMFP-YARQ  209 (281)
T ss_pred             ----ccc-chhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhcc--chhh-hHHH
Confidence                111 124788999999999999999988755543 22    222333333322222222222221  1111 1234


Q ss_pred             hhHHhhHhhhhccccccc
Q 024734          243 LVAVLYSVSRSKKKKNVC  260 (263)
Q Consensus       243 ~~~l~y~gv~~t~~~~~~  260 (263)
                      ++.++|.+.+.++++|.+
T Consensus       210 ~~~~~~~~~~~s~l~~~l  227 (281)
T TIGR03340       210 ILPSATLGGLMIGGAYAL  227 (281)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            667889999999988864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.79  E-value=2.9e-17  Score=149.68  Aligned_cols=197  Identities=14%  Similarity=0.080  Sum_probs=149.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CHHHHHHHHHHHHHHH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRSQIPPL--TLPILSAFFLLGFLGT   82 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~   82 (263)
                      .+.....+.=..+-.......|.++++ .| |+.+..+|++++.++...+... +.+++++.  .++++..++..|+++.
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            333333333333334445667888877 99 9999999999998766554322 22222333  2457778888999984


Q ss_pred             HHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCC
Q 024734           83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPP  162 (263)
Q Consensus        83 ~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~  162 (263)
                      ..+...+.++++++++.+.++.+++|++++++++++++||++++      ++.+++++++|+.+...  +          
T Consensus       126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~----------  187 (350)
T PTZ00343        126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K----------  187 (350)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c----------
Confidence            44555779999999999999999999999999999999999999      99999999999988652  1          


Q ss_pred             CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------chhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734          163 NSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS------AEFIVVFFYCFFVAIQSAILCLVMER  230 (263)
Q Consensus       163 ~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~  230 (263)
                             +. +....|++++++|+++|+.+++..||..++.+      ++.....++..++.+..+|+....|.
T Consensus       188 -------~~-~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~  253 (350)
T PTZ00343        188 -------EL-HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG  253 (350)
T ss_pred             -------cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                   11 12356999999999999999999999887532      25556667789999999999876654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.75  E-value=2.3e-16  Score=138.31  Aligned_cols=229  Identities=17%  Similarity=0.177  Sum_probs=162.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 024734            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL   80 (263)
Q Consensus         1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (263)
                      ++++........+...+.|+.+....|...++..++....+.|...+.+...+.....+ ....+..+ +++.....+.+
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~   78 (292)
T COG0697           1 MKRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEP-RGLRPALR-PWLLLLLLALL   78 (292)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc-cccccccc-chHHHHHHHHH
Confidence            34566678888888899999999999998765477777777899999888444432211 11111111 12345555666


Q ss_pred             H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHH-HHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCccccc
Q 024734           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAI-IFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMT  158 (263)
Q Consensus        81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~  158 (263)
                      + ..++.+++.++++++++.++.+.++.|+++.+++. ++++||++++      ++.|..+++.|+.++...+..     
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~-----  147 (292)
T COG0697          79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG-----  147 (292)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc-----
Confidence            6 89999999999999999999999999999999997 7779999999      999999999999987632111     


Q ss_pred             CCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHHccCCCcccc
Q 024734          159 SLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVF-FYCFFVAIQSAILCLVMERDLSSWSL  237 (263)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~  237 (263)
                                 .... ...|+++.++++++|+.+++..|+.. +.+ +..... ++..  ...........+...   ..
T Consensus       148 -----------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~  208 (292)
T COG0697         148 -----------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSGFG---AP  208 (292)
T ss_pred             -----------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcccc---cc
Confidence                       0111 46799999999999999999999988 554 555555 4444  222222222222111   11


Q ss_pred             cCCchhhHHhhHhhhhcccccccc
Q 024734          238 KPGVRLVAVLYSVSRSKKKKNVCV  261 (263)
Q Consensus       238 ~~~~~~~~l~y~gv~~t~~~~~~~  261 (263)
                      .....+..+.+.|++++++++.+.
T Consensus       209 ~~~~~~~~~~~~g~~~~~i~~~~~  232 (292)
T COG0697         209 ILSRAWLLLLYLGVFSTGLAYLLW  232 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            122457788899999998777653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.72  E-value=1.4e-15  Score=136.79  Aligned_cols=195  Identities=18%  Similarity=0.223  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 024734           19 HVGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRS-QIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSS   96 (263)
Q Consensus        19 wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~   96 (263)
                      -.++..+.....+++.+ |..-.++-...-.++..+....++++ +..+..+++|++.++++++...++.+...|++||+
T Consensus        25 ~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTs  104 (334)
T PF06027_consen   25 ITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTS  104 (334)
T ss_pred             HHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            34444444444443433 44444444444344444443333322 22222345566778889988999999999999999


Q ss_pred             chhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHH
Q 024734           97 PTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWV  176 (263)
Q Consensus        97 ~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (263)
                      .+.+.++..+.-+++++++++++|||.++.      |++|++++++|++++...+.....           +...+++..
T Consensus       105 vtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~-----------~~~~~~~~i  167 (334)
T PF06027_consen  105 VTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS-----------DSSSGSNPI  167 (334)
T ss_pred             HhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc-----------cCCCCCccc
Confidence            999999999999999999999999999999      999999999999987753321100           112456678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccC
Q 024734          177 FGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERD  231 (263)
Q Consensus       177 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  231 (263)
                      .||+++++|+..||.++++.++..++.| ......+..++|.+...+....+|.+
T Consensus       168 ~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~  221 (334)
T PF06027_consen  168 LGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERS  221 (334)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehh
Confidence            9999999999999999999999999987 88999999999999998888777764

Some of the sequences in this family are annotated as putative membrane proteins.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.65  E-value=9.4e-16  Score=118.07  Aligned_cols=124  Identities=24%  Similarity=0.408  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhhc
Q 024734           17 CAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYS   95 (263)
Q Consensus        17 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~   95 (263)
                      ++||...++.|...++ .||....++|+..+.+ +++.....++++..+.+++++......+.++ ..++.+++++++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4699999999998877 9999999999999998 6666665555433455667777788888887 99999999999999


Q ss_pred             CchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           96 SPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        96 ~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      ++++++.+.+++|+++.++++++++|+++++      +++|+++.+.|+.++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999      9999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.63  E-value=3.9e-15  Score=113.74  Aligned_cols=134  Identities=14%  Similarity=0.141  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIP-PLTLPILSAFFLLGFLGTSSQF   86 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~   86 (263)
                      ..++.++++++||...++.|..+++ +||..-.+.|..+...++..+....++.+.+ ..++|.|..+.+.|+.+.+...
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            4578899999999999999999876 9999999999999999998888776654332 3577888888888877799999


Q ss_pred             HHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        87 ~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      +||.+++.-+++....+-.++|+++.++++++++||++.+      +|+|+.+..+|+++++
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999      9999999999998754

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.59  E-value=3.4e-13  Score=116.89  Aligned_cols=218  Identities=11%  Similarity=0.005  Sum_probs=162.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCHHHHHHHHHH
Q 024734            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI---PPLTLPILSAFFLL   77 (263)
Q Consensus         1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~~   77 (263)
                      |+++..+|++..+.+.++||..+...|.. ++ .|+.++...|.+.+.+++.......++.+.   ...++|.+......
T Consensus         1 ~~~~~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~   78 (293)
T COG2962           1 MAKDSRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALT   78 (293)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHH
Confidence            56667899999999999999999999985 55 999999999999999888877665543222   12345566666666


Q ss_pred             HHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccc
Q 024734           78 GFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLM  157 (263)
Q Consensus        78 g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~  157 (263)
                      +.+.......|.++.++-.+-++|+=.+..|++..+++.+++|||+++.      |++++.++.+||...+...+     
T Consensus        79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g-----  147 (293)
T COG2962          79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLG-----  147 (293)
T ss_pred             HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcC-----
Confidence            6666888999999999999999999999999999999999999999999      99999999999988764222     


Q ss_pred             cCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccc
Q 024734          158 TSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSL  237 (263)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  237 (263)
                                     +-..    ..+.=+++|+.|... ||.. +.+ +.+-.+..++.-.+..+.+.+..+.+.+-...
T Consensus       148 ---------------~lpw----val~la~sf~~Ygl~-RK~~-~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~  205 (293)
T COG2962         148 ---------------SLPW----VALALALSFGLYGLL-RKKL-KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQ  205 (293)
T ss_pred             ---------------CCcH----HHHHHHHHHHHHHHH-HHhc-CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhc
Confidence                           1122    233347899999977 4434 343 67777777777777777776666654320111


Q ss_pred             cCCchhhHHhhHhhhh
Q 024734          238 KPGVRLVAVLYSVSRS  253 (263)
Q Consensus       238 ~~~~~~~~l~y~gv~~  253 (263)
                      .+...++-++..|+++
T Consensus       206 ~~~~~~~LLv~aG~vT  221 (293)
T COG2962         206 NANSLWLLLVLAGLVT  221 (293)
T ss_pred             CCchHHHHHHHhhHHH
Confidence            1223355566666654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.56  E-value=2.3e-13  Score=121.05  Aligned_cols=181  Identities=14%  Similarity=0.116  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF   87 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (263)
                      +++..+.++++||++.+..|...  +.++.++.  |..++.+++..+....+++ + +..++.+..-++.|.....++.+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~-~-~~~~~~~~~g~l~G~~w~ig~~~   75 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLP-E-FWALSIFLVGLLSGAFWALGQIN   75 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCC-c-ccccHHHHHHHHHHHHHHhhhhh
Confidence            46788999999999999999864  58888776  7888888777765554321 1 11244444344455555788899


Q ss_pred             HHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccch----hhHHHHHHHHHHHhhhccCCcccccCCCC
Q 024734           88 GYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAK----SVGTIVLITGAFIMTYYKGPHLLMTSLPP  162 (263)
Q Consensus        88 ~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~  162 (263)
                      ++.++++++.+.+..+.+ +.|++..+.+.+++|||.+++      +    ++|+++.++|+.++...++.+.       
T Consensus        76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~-------  142 (290)
T TIGR00776        76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA-------  142 (290)
T ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc-------
Confidence            999999999999999988 889999999999999999999      8    9999999999988653221100       


Q ss_pred             CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 024734          163 NSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCF  215 (263)
Q Consensus       163 ~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~  215 (263)
                           .++...+...|..+.+.|+++|+.|.+..|+.  +.+ +.+..+.|..
T Consensus       143 -----~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~  187 (290)
T TIGR00776       143 -----GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAI  187 (290)
T ss_pred             -----ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHH
Confidence                 00000223569999999999999999999875  354 7777555554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.48  E-value=7e-12  Score=106.49  Aligned_cols=214  Identities=14%  Similarity=0.016  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF   87 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (263)
                      ++..++.+++.-=....+.|...+. .+|.-.+.+|..+++++++++.    |+.+++.+++++..+...|..-..-|.+
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsLg~MNl~   87 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSLGGMNLL   87 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence            5777777777777777888988777 9999999999999999998864    2222456777878888888877778889


Q ss_pred             HHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcc
Q 024734           88 GYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQ  167 (263)
Q Consensus        88 ~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~  167 (263)
                      ||.++.+.|-+.+..+-++.|+...+++    .+|..        ..+-+.+++.|+.++.-. +               
T Consensus        88 FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~--------d~vwvaLAvlGi~lL~p~-~---------------  139 (292)
T COG5006          88 FYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLR--------DFVWVALAVLGIWLLLPL-G---------------  139 (292)
T ss_pred             HHHHHHhccchhhhhhhhccHHHHHHHh----ccchh--------hHHHHHHHHHHHHhheec-c---------------
Confidence            9999999999999999999999887765    33433        444456778899887521 1               


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCchhhHHh
Q 024734          168 VFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVL  247 (263)
Q Consensus       168 ~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~  247 (263)
                       .+..+.+..|..+++.++.+|+.|.+..||..+..+ ..+-+..-+.++++..+|+.....++.    +.....+..-+
T Consensus       140 -~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag~~----l~~p~ll~laL  213 (292)
T COG5006         140 -QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAGPA----LFSPSLLPLAL  213 (292)
T ss_pred             -CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcchh----hcChHHHHHHH
Confidence             123344568999999999999999999999997765 788888999999999999988554331    11112233445


Q ss_pred             hHhhhhccccccc
Q 024734          248 YSVSRSKKKKNVC  260 (263)
Q Consensus       248 y~gv~~t~~~~~~  260 (263)
                      ..++.+|.+-|-+
T Consensus       214 gvavlSSalPYsL  226 (292)
T COG5006         214 GVAVLSSALPYSL  226 (292)
T ss_pred             HHHHHhcccchHH
Confidence            7789999887754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.47  E-value=1.6e-12  Score=113.02  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=113.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH
Q 024734            4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSN--LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG   81 (263)
Q Consensus         4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (263)
                      .+.++..+.++++++|+......|...++ .+|  .....+|+.++.+++.+..+..+++.  ..+.+++......+.++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPNP--QALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHHH
Confidence            45679999999999999999999998654 664  45555789999999988876644322  33566777778888888


Q ss_pred             -HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHH
Q 024734           82 -TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGA  144 (263)
Q Consensus        82 -~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv  144 (263)
                       ..++.++++++++.+++.++.+.+++|+++.++++++++|+++.+      +++|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             899999999999999999999999999999999999999999999      999999999886

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.38  E-value=5.7e-12  Score=112.38  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCc
Q 024734           75 FLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPH  154 (263)
Q Consensus        75 ~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~  154 (263)
                      +....+.+.++..+..++++|+++..+++..+.-+||..++.++..||+++.      |.+++.+.+.|+++++..+..+
T Consensus       163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccc
Confidence            4445555889999999999999999999999999999999999999999999      9999999999999987543211


Q ss_pred             ccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch---hHHHHHHHHHHHHHHHHHHHHHcc-
Q 024734          155 LLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAE---FIVVFFYCFFVAIQSAILCLVMER-  230 (263)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-  230 (263)
                      .            ++........|+++++++|+.||+|+++.||...+++..   ..+..+..++..+.+.|..++.+. 
T Consensus       237 ~------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~  304 (416)
T KOG2765|consen  237 N------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF  304 (416)
T ss_pred             c------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            0            112344567899999999999999999999988776312   223333444444444444443321 


Q ss_pred             CCCcccccCCchhhHHhhHhhhhccc
Q 024734          231 DLSSWSLKPGVRLVAVLYSVSRSKKK  256 (263)
Q Consensus       231 ~~~~~~~~~~~~~~~l~y~gv~~t~~  256 (263)
                      ..+.++.+.......+++.+.+.|.+
T Consensus       305 ~~e~F~lP~~~q~~~vv~~~ligtvv  330 (416)
T KOG2765|consen  305 GEERFELPSSTQFSLVVFNNLIGTVV  330 (416)
T ss_pred             ccCcccCCCCceeEeeeHhhHHHHHH
Confidence            12233444444444555555555543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.37  E-value=1.3e-13  Score=117.84  Aligned_cols=205  Identities=15%  Similarity=0.230  Sum_probs=144.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCHHHHHHHHHHHHHHHHH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI-PPLTLPILSAFFLLGFLGTSS   84 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~   84 (263)
                      .++.....+....-.++.++.|..  + .+|.+..-.|++.-.++-.|...+++.... |...+   +.+++.|+.|+.+
T Consensus        37 ~~gl~l~~vs~ff~~~~vv~t~~~--e-~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tg  110 (346)
T KOG4510|consen   37 NLGLLLLTVSYFFNSCMVVSTKVL--E-NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTG  110 (346)
T ss_pred             ccCceehhhHHHHhhHHHhhhhhh--c-cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE---EEEEeehhhhhhH
Confidence            345555555644444555555543  3 789999999977777766665544333221 33333   2467788888777


Q ss_pred             HHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 024734           85 QFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNS  164 (263)
Q Consensus        85 ~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~  164 (263)
                      ....||+++|.+-++|+++..+.|+++++++|.++|||.++.      +.+|..+.+.|+++++  +.+.  .+.|+.  
T Consensus       111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpF--lFG~~t--  178 (346)
T KOG4510|consen  111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPF--LFGDTT--  178 (346)
T ss_pred             HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCc--ccCCCc--
Confidence            889999999999999999999999999999999999999999      9999999999999987  2221  122211  


Q ss_pred             CcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHc
Q 024734          165 SLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVME  229 (263)
Q Consensus       165 ~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  229 (263)
                      ..|+.+.-+....|...++.+++.-|...++.|++.++.. .+..+.|..+++.+..++.....+
T Consensus       179 ~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig  242 (346)
T KOG4510|consen  179 EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIG  242 (346)
T ss_pred             cccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhcc
Confidence            0111122122235778888888888888888899988875 566667777788777776665444

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.33  E-value=8.3e-11  Score=104.71  Aligned_cols=136  Identities=14%  Similarity=0.125  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS   83 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (263)
                      +..|.+..++++++|+...+..|...++ .+|.... +-..++++++.++....+.  ....++..+...+.+|+++ .+
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAGAE-HGPATVA-IGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHH-HHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence            3568899999999999999999987654 8887775 4456667777776654332  1123455555566889998 89


Q ss_pred             HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhc
Q 024734           84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY  150 (263)
Q Consensus        84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~  150 (263)
                      ++.++++++++.++++++.+.+++|+++.++++++++|+++..      +++|.++.+.|+......
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999      999999999999887643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.30  E-value=1e-10  Score=103.99  Aligned_cols=137  Identities=18%  Similarity=0.018  Sum_probs=114.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS   83 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (263)
                      +..+.++.++++++|+......|... + -++.....+++.++++.+.++....+.......+.++|......++++ ..
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999853 3 345666788999998888887665433221123567777888889988 89


Q ss_pred             HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      ++.+|++++++.++++++.+.+++|++++++++++++|+++..      +++|.++.+.|+.++..
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999      99999999999988753

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.29  E-value=9.4e-12  Score=95.38  Aligned_cols=102  Identities=24%  Similarity=0.384  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHH
Q 024734           41 FYSKAFASLVLLPASLLFHRSQI--PPLTLPILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAII  117 (263)
Q Consensus        41 ~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~  117 (263)
                      .+|+..+.+++..+...+++.+.  +..+.|.+......|.++ ..++.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            58999999999988777443211  122234445566668888 699999999999999 58889999999999999999


Q ss_pred             HhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734          118 FRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus       118 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      ++|||++++      ++.|++++++|++++..
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            999999999      99999999999999874

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.20  E-value=7.5e-09  Score=92.59  Aligned_cols=196  Identities=18%  Similarity=0.216  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024734           11 GMMMAECAHVGLMFAGKAAMSDGMS--NLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG   88 (263)
Q Consensus        11 ~~l~a~~~wg~~~~~~k~~~~~~~~--p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (263)
                      .....++.||...-  |+...+.-.  |..+++.++....+.-.+.....++++.++.+.   ......+++..++..+.
T Consensus         7 ~i~~~~~~~g~~qE--~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   81 (303)
T PF08449_consen    7 GIFGGCCSYGILQE--KIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPL---KKYAILSFLFFLASVLS   81 (303)
T ss_pred             HHHHHHHHHHHHHH--HHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChH---HHHHHHHHHHHHHHHHH
Confidence            34445555553322  222223344  889999999988887776655443222223333   45566777778888999


Q ss_pred             HHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCccc
Q 024734           89 YAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQV  168 (263)
Q Consensus        89 ~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~  168 (263)
                      ..+++|+|...-.++-.+.|+.+++++.+++++|.+++      ++.++.+..+|+.+....+..+..      +    .
T Consensus        82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~------~----~  145 (303)
T PF08449_consen   82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS------S----S  145 (303)
T ss_pred             HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc------c----c
Confidence            99999999999999999999999999999999999999      999999999999887643321100      0    0


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHH
Q 024734          169 FMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLV  227 (263)
Q Consensus       169 ~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~  227 (263)
                      +....+...|+.+.+.+.++-+...+.++|..++++ ++.+.++|...++.+...+....
T Consensus       146 ~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  146 NSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            111222334999999999999999999999998765 37899999999999988888777

; GO: 0055085 transmembrane transport

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.19  E-value=5.8e-10  Score=99.37  Aligned_cols=132  Identities=13%  Similarity=0.097  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQ   85 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (263)
                      ..|.++.+.++++|+...+..|...++ .+|.....   ..+...+.+.....+. .....+.+.|..+...++...+++
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFLSPQ-PAMVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHHhcC-ccccCCHHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999986544 78876532   3333444433333221 112345667766666665338899


Q ss_pred             HHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           86 FFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        86 ~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      .+|++++++.++++++.+.+++|+++.++++++++|+++..      +++|.++.+.|+.+..
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            99999999999999999999999999999999999999999      9999999999998765

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.14  E-value=2.3e-09  Score=98.01  Aligned_cols=135  Identities=10%  Similarity=0.106  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCHHHHHHHHHHHHHH
Q 024734            7 APVIGMMMAECAHVGLMFAGKAAMSDGMSN-LVFVFYSKAFASLVLLPASLLFHRSQI----PPLTLPILSAFFLLGFLG   81 (263)
Q Consensus         7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~   81 (263)
                      .+.+.++.++++|+...+..|...++ .|| ....++...++.+.+.+.....++...    ...+... ...+..++..
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t  266 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence            37788999999999999999987655 644 466777777777776665555433211    1122222 2244455444


Q ss_pred             HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      .+.+.+|++++++.+++.++...+++|+++.++++++++|++++.      +++|.++.+.|+.+...
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            678889999999999999999999999999999999999999999      99999999999988763

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.11  E-value=4.1e-09  Score=94.06  Aligned_cols=137  Identities=16%  Similarity=0.169  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCHHHHHHHHHHH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMSDG--MSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IPPLTLPILSAFFLLG   78 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~--~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~g   78 (263)
                      ..|.++.+.++++|+...+..|...++.  .+......+-...+.+.+.......++..     ....+.+.|..++..|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            4688999999999999999999864431  22233344445555444443333333211     1234667788888999


Q ss_pred             HHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           79 FLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        79 ~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      +++ .+.+.+|+.++++.++++++.+.+++|+++.++++++++|+++..      +++|.++.++|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            999 899999999999999999999999999999999999999999999      9999999999998765

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.09  E-value=1.1e-09  Score=96.94  Aligned_cols=134  Identities=16%  Similarity=0.069  Sum_probs=94.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNL----VFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL   80 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (263)
                      +.++..+.+.++++|+...+..|...++ .+|.    ....+.+...+..+.+.....+++.... +.+.+......+.+
T Consensus       142 ~~~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  219 (281)
T TIGR03340       142 RRKAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFP-YARQILPSATLGGL  219 (281)
T ss_pred             chhHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhh-hHHHHHHHHHHHHH
Confidence            3467778889999999999998875332 4443    2233333333222222222222211111 22233344555666


Q ss_pred             H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (263)
Q Consensus        81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (263)
                      . .+++.++++++++.+++.++.+.+++|+++.++++++++|++++.      +++|.++.++|+.+
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            6 889999999999999999999999999999999999999999999      99999999999975

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.02  E-value=2.4e-09  Score=95.62  Aligned_cols=139  Identities=16%  Similarity=0.194  Sum_probs=107.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHHHHHHHHHHhccCCCCC---------CCH-HHHHH
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSD-GMSNLVFVFYSKAFASLVLLPASLLFHRSQIPP---------LTL-PILSA   73 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~---------~~~-~~~~~   73 (263)
                      +..|.++.+++++.|+...+..|...++ +.||..+..+....+.+.+.|+....+......         .+. ..+..
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            3568899999999999999999987651 499999999999999999999876544221100         010 11111


Q ss_pred             HHHHHHHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           74 FFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        74 ~~~~g~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      .+..+... ...+.+++.++++++++.+++..++.|++++++++++++|+++..      +++|..+.+.|+.+...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            22233323 445567788999999999999999999999999999999999999      99999999999988663

specificities overlap.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.86  E-value=1.4e-07  Score=81.92  Aligned_cols=153  Identities=13%  Similarity=0.148  Sum_probs=112.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734           67 TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (263)
Q Consensus        67 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (263)
                      ++|+.....+=+++..+.+.+.+.++++.+++.-.++..+-.++|++++++++|+|++++      ||.++.+.++|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            456666666667777889999999999999999999999999999999999999999999      99999999999988


Q ss_pred             hhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHH
Q 024734          147 MTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSA-EFIVVFFYCFFVAIQSAILC  225 (263)
Q Consensus       147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~  225 (263)
                      +...+....  ..+ .+.+.+..+...+...|.++.++++++-++..+...|..|+.+. ...........|.+..++..
T Consensus        87 v~~~~~~~~--~~~-~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~  163 (244)
T PF04142_consen   87 VQLSSSQSS--DNS-SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL  163 (244)
T ss_pred             eecCCcccc--ccc-cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            764222110  000 00001011123456789999999999999999999999987632 34555555666666665554


Q ss_pred             HHH
Q 024734          226 LVM  228 (263)
Q Consensus       226 ~~~  228 (263)
                      ...
T Consensus       164 ~~~  166 (244)
T PF04142_consen  164 LLS  166 (244)
T ss_pred             hcc
Confidence            443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.84  E-value=9.8e-08  Score=85.11  Aligned_cols=133  Identities=14%  Similarity=0.068  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024734           10 IGMMMAECAHVGLMFAGKAAMSDG-MSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG   88 (263)
Q Consensus        10 l~~l~a~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (263)
                      ...+.++++|+...+..|...++. .++.....+-..++.+.+.+.... ........+...+......|+....++.++
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~  230 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIVTTVPLLCF  230 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            346778899999999998864321 223333344444444433322110 000011112222333444555447899999


Q ss_pred             HHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           89 YAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        89 ~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      ++++++.+++.++.+.+++|++..++++++++|+++..      +++|+++.++|+.++..
T Consensus       231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999      99999999999888763

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.81  E-value=1.7e-07  Score=85.58  Aligned_cols=138  Identities=14%  Similarity=0.100  Sum_probs=103.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHHHHHHHHHHhccCCC-----------CCCC
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSD------GMSNLVFVFYSKAFASLVLLPASLLFHRSQI-----------PPLT   67 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-----------~~~~   67 (263)
                      +..|.++.++++++|+...+..|...++      ..++..+..+....++++++|+....+....           ....
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            3568999999999999999999997753      2567777777788999999998765432110           0001


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734           68 LPILSAFFLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (263)
Q Consensus        68 ~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (263)
                      ........+.+.+. .+.+...|++++++++..+++..++.|++++++++++++|+++..      +++|.++.+.|+.+
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            11111122222222 455555667999999999999999999999999999999999999      99999999999976


Q ss_pred             hh
Q 024734          147 MT  148 (263)
Q Consensus       147 i~  148 (263)
                      -.
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            43

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.80  E-value=2.2e-07  Score=74.26  Aligned_cols=133  Identities=17%  Similarity=0.241  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHHHHHHHHHHhccCCC-C-----CC-----CHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAMSD------GMSNLVFVFYSKAFASLVLLPASLLFHRSQI-P-----PL-----TLPI   70 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~-----~~-----~~~~   70 (263)
                      |.+..+.+.++-+...+..|...++      +.+|.++..+-...+.+++++.....++.+. +     ..     +.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            4567888899999999999987765      6999999999999999999999887765431 0     00     2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734           71 LSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (263)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (263)
                      +..++..|+++...+...+..++++++...+++...-.+.+.++++++++|+++.+      +++|+.+++.|+.+
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            45555667777889999999999999999999999999999999999999999999      99999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.80  E-value=2.6e-07  Score=80.72  Aligned_cols=132  Identities=16%  Similarity=0.185  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVF-YSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS   83 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (263)
                      ..+..+.+.+++.|+...+..|... + .++..... +.+........+..  ..... ...+.+++......|+++ ..
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999765 3 77777777 45442222222222  11111 234567777888889998 67


Q ss_pred             HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      .+.++++++++.+++.++.+.+++|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999      9999999999998765

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.79  E-value=1e-07  Score=84.90  Aligned_cols=129  Identities=17%  Similarity=0.139  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH---HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKA---FASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGT   82 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   82 (263)
                      .|+.+..+++.+.++......|..  + .||....+....   +++.++.+..  + + .++. +.+.....+..|++..
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~~-~~~~~~~~~~~Gi~~~  222 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKPL-KKYAILLNILPGLMWG  222 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--h-c-ccch-HHHHHHHHHHHHHHHH
Confidence            789999999999999999999965  3 889988555544   3444333322  1 1 1112 2333334455777778


Q ss_pred             HHHHHHHHhhh-hcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchh----hHHHHHHHHHHHhh
Q 024734           83 SSQFFGYAGIY-YSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKS----VGTIVLITGAFIMT  148 (263)
Q Consensus        83 ~~~~~~~~al~-~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~li~  148 (263)
                      .++.+|+.+.+ +.+++.++++.+.+|+...+++++++||+.+++      ++    +|.++.+.|+.++.
T Consensus       223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            88889999999 999999999999999999999999999999999      99    99999999998765

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.58  E-value=6.2e-07  Score=80.23  Aligned_cols=180  Identities=14%  Similarity=0.140  Sum_probs=139.1

Q ss_pred             HHHHhh--CCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhh
Q 024734           26 GKAAMS--DGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTAL  103 (263)
Q Consensus        26 ~k~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil  103 (263)
                      .|..++  +---|..+...+...+.+...........+..+..++..+..++.+|+...+...+-..++++.+++-.-.+
T Consensus        36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~i  115 (316)
T KOG1441|consen   36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTI  115 (316)
T ss_pred             eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHH
Confidence            366665  446688888888877777666654443222222112233455677788888888899999999999999999


Q ss_pred             ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHH
Q 024734          104 LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLA  183 (263)
Q Consensus       104 ~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l  183 (263)
                      -.++|.++.++++++.+|+.++.      .+..+.....|+.+.+..                    ..+.+..|.+.++
T Consensus       116 Ka~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--------------------e~~fn~~G~i~a~  169 (316)
T KOG1441|consen  116 KALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--------------------ELSFNLFGFISAM  169 (316)
T ss_pred             HhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--------------------cccccHHHHHHHH
Confidence            99999999999999999999999      888888888888775421                    1223457999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh--cC-chhHHHHHHHHHHHHHHH-HHHHHHccC
Q 024734          184 VDCVFTSAWFIVQASILKK--FS-AEFIVVFFYCFFVAIQSA-ILCLVMERD  231 (263)
Q Consensus       184 ~aa~~~a~~~v~~k~~~~~--~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~  231 (263)
                      .+.+..+..+++.|+..++  ++ ++.+.+.++.-++.+.++ |.....|++
T Consensus       170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~  221 (316)
T KOG1441|consen  170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGN  221 (316)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccc
Confidence            9999999999999999852  22 489999999999999999 888776664

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.56  E-value=4.5e-07  Score=69.27  Aligned_cols=68  Identities=15%  Similarity=0.113  Sum_probs=61.9

Q ss_pred             HHHHHHH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           75 FLLGFLG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        75 ~~~g~~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      ...++.+ ..++.++..++++.|.+.+-.+.++.|+++.++++++++||++++      |++|+.+.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3445566 788999999999999999999988999999999999999999999      9999999999998865

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.54  E-value=1.5e-06  Score=74.31  Aligned_cols=132  Identities=15%  Similarity=0.099  Sum_probs=111.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TS   83 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (263)
                      +..|..+.+.+..+|+..-+..|.+-+. .+.-.-+..-+.+++++.+|+...+....  -.+++....-+..+++. .+
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSal  222 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhccc
Confidence            4578889999999999999998887543 55666777889999999999987544322  23455556667789999 99


Q ss_pred             HHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHH
Q 024734           84 SQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF  145 (263)
Q Consensus        84 ~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  145 (263)
                      .+.+...++++.|...-+++.+++|.+.++.++++++|+++..      ||.|++..+++..
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa  278 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA  278 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999      9999988777665

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.45  E-value=4.8e-06  Score=65.25  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 024734            7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG-TSSQ   85 (263)
Q Consensus         7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~   85 (263)
                      .+++.++...++=+...++.|...++ .+..+.... . ...+.    . .  .      ++   ...+..|+.. .+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~----~-~--~------~p---~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL----A-F--G------LA---LRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH----H-H--h------cc---HHHHHHHHHHHHHHH
Confidence            36778888888888999999998765 544332221 1 00000    0 0  0      11   1246677888 8999


Q ss_pred             HHHHHhhhhcCchhhhhhccchHHHHHHHHHH--HhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           86 FFGYAGIYYSSPTLSTALLNLVPGFTFILAII--FRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        86 ~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      .+|.+++++.|.+.+..+.+..|.++.+.++.  +++|+++++      |++|+.+.++|+.++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888888875  899999999      9999999999999876

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.44  E-value=0.00022  Score=64.11  Aligned_cols=208  Identities=12%  Similarity=0.094  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHHHHHHHHHHhccC----CCCC------CCHHHHHH
Q 024734            7 APVIGMMMAECAHVGLMFAGKAAMSDG---MSNLVFVFYSKAFASLVLLPASLLFHRS----QIPP------LTLPILSA   73 (263)
Q Consensus         7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~------~~~~~~~~   73 (263)
                      .-++.++...+-++...+..|....++   ..|...++.--++-.++.....+...|+    ..+.      ..+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            445666777778899999999876544   5677777777666666666666555322    1111      13434444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCC
Q 024734           74 FFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGP  153 (263)
Q Consensus        74 ~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~  153 (263)
                      ..+=+.+-++.+-+++.++.+.+++.-.+...+--+.|+++..+++++|.+++      ||.+..+.++|+.++.....+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence            44445555777789999999999999999999999999999999999999999      999999999999987622111


Q ss_pred             cccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHc
Q 024734          154 HLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSA-EFIVVFFYCFFVAIQSAILCLVME  229 (263)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~  229 (263)
                       ..      +++  ......+...|....+.+.+.=+...+...|.+++-.. -+..+.-..++|.++.+...+..+
T Consensus       169 -~~------~a~--~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d  236 (345)
T KOG2234|consen  169 -PT------GAK--SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQD  236 (345)
T ss_pred             -CC------Ccc--CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             00      000  02234456789999999999999999999999976432 344444445566655555554443

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.36  E-value=2.7e-05  Score=67.73  Aligned_cols=189  Identities=17%  Similarity=0.170  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHh---hCCCC----hHHHHHHHHHHHHHHHHHHHHHhccCCCC-----------CC--CHHHHHHHHHHHH
Q 024734           20 VGLMFAGKAAM---SDGMS----NLVFVFYSKAFASLVLLPASLLFHRSQIP-----------PL--TLPILSAFFLLGF   79 (263)
Q Consensus        20 g~~~~~~k~~~---~~~~~----p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~g~   79 (263)
                      ..|.+++|.+-   .+|-|    |+..+..-|+--..++..+.+++.|...+           ..  +.+. ...+.=++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal   94 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPAL   94 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHH
Confidence            45777888763   23333    45444444444456666666655443211           00  1111 11122234


Q ss_pred             HHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccC
Q 024734           80 LGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTS  159 (263)
Q Consensus        80 ~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  159 (263)
                      +...+..+.+.|+.+|+++.--.+-...-+|+.+++.-+++++++.+      ||.|+....+|++++...+- +.  .+
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~-~~--~~  165 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDV-HL--VT  165 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeec-cc--cc
Confidence            44778889999999999999888988999999999999999999999      99999999999988753211 00  01


Q ss_pred             CCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHH
Q 024734          160 LPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILC  225 (263)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~  225 (263)
                      |+       -...++...|+++.+.+-+.-|...++-.|.+++.. +|.+...|+.++|.+....++
T Consensus       166 ~p-------~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~  225 (372)
T KOG3912|consen  166 DP-------YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA  225 (372)
T ss_pred             CC-------ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence            11       112355678999999999999999999988888643 489999999999965544443

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.35  E-value=3.9e-08  Score=84.04  Aligned_cols=171  Identities=20%  Similarity=0.235  Sum_probs=130.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHH
Q 024734           35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFIL  114 (263)
Q Consensus        35 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll  114 (263)
                      .|..-.++....-+++-.++..+++  +..+.   .|.+.+++++...=++.+...|.+||+-+...++-.-.-..+.++
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR~--~~~~~---~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~l  121 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFRR--KYIKA---KWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL  121 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhhh--HHHHH---HHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence            3666677777666777777666532  11111   223466677777666777888999999999999977666678899


Q ss_pred             HHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024734          115 AIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFI  194 (263)
Q Consensus       115 ~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v  194 (263)
                      +|+++|.|-++.      |+.|+++|+.|++++.+.+ -+..           +.+++++...||.+++++|-+||..++
T Consensus       122 sw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD-V~ag-----------d~aggsnp~~GD~lvi~GATlYaVSNv  183 (336)
T KOG2766|consen  122 SWFFLKTRYRLM------KISGVVICIVGVVMVVFSD-VHAG-----------DRAGGSNPVKGDFLVIAGATLYAVSNV  183 (336)
T ss_pred             HHHHHHHHHhhh------eeeeEEeEecceEEEEEee-eccc-----------cccCCCCCccCcEEEEecceeeeeccc
Confidence            999999999999      9999999999999887532 1111           134567778899999999999999999


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734          195 VQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMER  230 (263)
Q Consensus       195 ~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  230 (263)
                      ....+.++.| ....+....++|++...+= ...+.
T Consensus       184 ~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~  217 (336)
T KOG2766|consen  184 SEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFER  217 (336)
T ss_pred             cHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence            9999999986 8999999999999888665 44554

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.35  E-value=1.5e-05  Score=72.08  Aligned_cols=139  Identities=12%  Similarity=0.056  Sum_probs=108.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CHHHHHHHHHHHHHH
Q 024734            4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPL--TLPILSAFFLLGFLG   81 (263)
Q Consensus         4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~   81 (263)
                      +..+|-+.++.++.++|...+.-+....+ .|+.++.+.=.+++.++..+.....+++...+.  +.+.....+.-++..
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~l  243 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCL  243 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHH
Confidence            56789999999999999999999988765 899999988888999888887776666544333  334333222222222


Q ss_pred             HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      ...+.+.-..+++++|+...+=.-+...++.+++++++|+++++.      .++|.++.++|.++...
T Consensus       244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            555566677888899987777777889999999999999999999      99999999999987654

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=8.7e-05  Score=65.76  Aligned_cols=195  Identities=16%  Similarity=0.192  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHH--HHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024734            9 VIGMMMAECAHVGLMFAGKAAMSDGMSNLVFV--FYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQF   86 (263)
Q Consensus         9 ~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~--~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   86 (263)
                      +...+.-|+.--...+..|.++..-=-|..+.  .++.+...+.+...... +--+.++++++..+.++...++-.+...
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~~i~   92 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVGMLF   92 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHHHHH
Confidence            34444444444445566677664322233333  37777766666554322 1111245666666666766666555556


Q ss_pred             HHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCc
Q 024734           87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL  166 (263)
Q Consensus        87 ~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  166 (263)
                      .-..+++|.+...-+++-+..|+++++....+++.|++++      .|..+...++|.......                
T Consensus        93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~----------------  150 (314)
T KOG1444|consen   93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT----------------  150 (314)
T ss_pred             HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc----------------
Confidence            6678999999999999999999999999999999999999      999999988888765421                


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734          167 QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMER  230 (263)
Q Consensus       167 ~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~  230 (263)
                          +......|..+.+...+.-+.+.+..|+..+..+ ..+.+++|..+..........+++|+
T Consensus       151 ----d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge  211 (314)
T KOG1444|consen  151 ----DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE  211 (314)
T ss_pred             ----cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcc
Confidence                1112234889999999999999999999887532 26789999999999988888877765

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.30  E-value=3.1e-06  Score=70.03  Aligned_cols=99  Identities=16%  Similarity=0.209  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCC
Q 024734           81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSL  160 (263)
Q Consensus        81 ~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~  160 (263)
                      .+..++.|..+++..+++.++.+..+.--|+.++++++++||+...      |+++.++++.|++++... +        
T Consensus        63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~-D--------  127 (290)
T KOG4314|consen   63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYA-D--------  127 (290)
T ss_pred             EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEec-c--------
Confidence            3678889999999999999999999999999999999999999999      999999999999987632 2        


Q ss_pred             CCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024734          161 PPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKF  203 (263)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~  203 (263)
                               +...+.+.|+.+++.|+..-|+|.++.|+...+-
T Consensus       128 ---------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  128 ---------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNA  161 (290)
T ss_pred             ---------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                     1234557899999999999999999999988764

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.16  E-value=0.00018  Score=65.31  Aligned_cols=181  Identities=13%  Similarity=0.052  Sum_probs=117.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHH-HHHHHHHHHHH-HHHHhccCC---CCCCCHHHHHHHH
Q 024734            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFY-SKAFASLVLLP-ASLLFHRSQ---IPPLTLPILSAFF   75 (263)
Q Consensus         1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~l~l~~-~~~~~~~~~---~~~~~~~~~~~~~   75 (263)
                      |+++-..+++..+.++++||+.+.-.|...+  . +++.-.. -..++.++.-. ......+..   ....+.+.+...+
T Consensus         1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~k~--w-~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          1 MSNAIILGIIWHLIGGASSGSFYAPFKKVKK--W-SWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             CCchhHHHHHHHHHHHHHhhcccccccccCC--C-chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence            6677889999999999999999999998432  2 2222211 11111111110 011111110   0234566666667


Q ss_pred             HHHHHHHHHHHHHHHhhhhcCchhhhhhc-cchHHHHHHHHHHHhhhcc---cccccCccchhhHHHHHHHHHHHhhhcc
Q 024734           76 LLGFLGTSSQFFGYAGIYYSSPTLSTALL-NLVPGFTFILAIIFRVEKL---DWRSSSSLAKSVGTIVLITGAFIMTYYK  151 (263)
Q Consensus        76 ~~g~~~~~~~~~~~~al~~~~~~~asil~-~~~Pv~~~ll~~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~li~~~~  151 (263)
                      +.|.+-...+..++.++++.+.+.+..+. .+.-+...++..++++|-.   +.++  ...-.+|+++.++|+.+.....
T Consensus        78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag  155 (345)
T PRK13499         78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAG  155 (345)
T ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhh
Confidence            77777799999999999999999999774 4888899999999998754   3331  1116788999999998876411


Q ss_pred             CCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHH
Q 024734          152 GPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWF  193 (263)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~  193 (263)
                      ...     |+  .+.+++..+.+...|...+++|.+.++.|+
T Consensus       156 ~~k-----~~--~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        156 QLK-----ER--KMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             hhc-----cc--ccccccccccchHhHHHHHHHHHHHHHHHH
Confidence            110     00  000000223456679999999999999999

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.15  E-value=0.00027  Score=61.94  Aligned_cols=142  Identities=13%  Similarity=0.066  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734           68 LPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (263)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (263)
                      .+.+...++.|++..+.|..++.+.++.+.+++.-+.+ ..=+.+.++++++++|.-+.+++.  .-.+++++.++|+.+
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHH
Confidence            36666677778888999999999999999999998876 666678889999999998877320  023477777888876


Q ss_pred             hhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 024734          147 MTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCL  226 (263)
Q Consensus       147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  226 (263)
                      .+..++.+.            ..++..+..-|....+++++.|..|....|.  .+.+ +.+..+=|.+.=.+..+.+..
T Consensus       120 ts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~-~~~~~lPqaiGm~i~a~i~~~  184 (269)
T PF06800_consen  120 TSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVS-GWSAFLPQAIGMLIGAFIFNL  184 (269)
T ss_pred             hcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCC-hhHhHHHHHHHHHHHHHHHhh
Confidence            553222110            0112344566999999999999999999765  3443 677766665433333334443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.07  E-value=7.4e-05  Score=65.78  Aligned_cols=187  Identities=16%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 024734           18 AHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI---PPLTLPILSA-FFLLGFLGTSSQFFGYAGIY   93 (263)
Q Consensus        18 ~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~---~~~~~~~~~~-~~~~g~~~~~~~~~~~~al~   93 (263)
                      .-|..+...+...+. -=|..++.+..++-.++-......++++..   -..+|++..+ +...|+..+..-++..+++.
T Consensus        28 Si~Ltf~~~~~~~~f-~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~  106 (349)
T KOG1443|consen   28 SIGLTFYFKWLTKNF-HFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLE  106 (349)
T ss_pred             HHHHHHHhhhhhcCc-CCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceee
Confidence            334455555554444 236777766655544443333333333222   2456665443 33456655777788999999


Q ss_pred             hcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCc
Q 024734           94 YSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQT  173 (263)
Q Consensus        94 ~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (263)
                      |++.+.-+..-...++|+.+++.++.-||++|.      -..-+.+...|+.+.+. +.                  ++ 
T Consensus       107 yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft~-Ks------------------Tq-  160 (349)
T KOG1443|consen  107 YVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY-KS------------------TQ-  160 (349)
T ss_pred             eeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe-cc------------------cc-
Confidence            999999999999999999999999999999988      54444455555555442 22                  12 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----chhHHHHHHHHHHHHHHHHHHHHHccC
Q 024734          174 NWVFGGLLLAVDCVFTSAWFIVQASILKKFS----AEFIVVFFYCFFVAIQSAILCLVMERD  231 (263)
Q Consensus       174 ~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~  231 (263)
                      -...|..+..+|+++-++-=...++..++.|    +|+..+....-.-.+..+|..+.+|+.
T Consensus       161 f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~  222 (349)
T KOG1443|consen  161 FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL  222 (349)
T ss_pred             eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence            2245888888777766665555555555433    478888887777778888888888874

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.92  E-value=0.00028  Score=63.14  Aligned_cols=135  Identities=19%  Similarity=0.213  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHHHHHHHHHH--hccCCC----CCCCHHHHHHHHHHHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAM-SDGMSNLVFVFYSKAFASLVLLPASLL--FHRSQI----PPLTLPILSAFFLLGFL   80 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~g~~   80 (263)
                      |++.++.+.++=|.....-+... +++.++.+..++-...+.++.++....  .+....    ...+++.+..++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            89999999999999999887765 566999999999999999888877766  222111    11233344555666666


Q ss_pred             HHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           81 GTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        81 ~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      +...+.+.+.-.++.++...+++..+--.++.++++++++|++++.      +|+|+++.+.|..+=.
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence            6778888888899999999999999999999999999999999999      9999999999997744

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.77  E-value=0.00044  Score=60.60  Aligned_cols=115  Identities=11%  Similarity=0.003  Sum_probs=84.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHH-HHHHhccCCCCCCCHHHHHHHHHHHHHHH
Q 024734            4 VGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLP-ASLLFHRSQIPPLTLPILSAFFLLGFLGT   82 (263)
Q Consensus         4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   82 (263)
                      +..|+++.+++..+.+.....+.|..  + +||++..+=.. ++.++-.. +....+++.   .+++.+. -++.|++..
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~--~-~~~~~~~lPqa-iGm~i~a~i~~~~~~~~~---~~k~~~~-nil~G~~w~  206 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF--H-VSGWSAFLPQA-IGMLIGAFIFNLFSKKPF---FEKKSWK-NILTGLIWG  206 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc--C-CChhHhHHHHH-HHHHHHHHHHhhcccccc---cccchHH-hhHHHHHHH
Confidence            44689999999999998888888864  3 88887776443 33332222 222222211   2223333 355677778


Q ss_pred             HHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhccccc
Q 024734           83 SSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWR  126 (263)
Q Consensus        83 ~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~  126 (263)
                      .++.+++.+.+..+.+.+-.+..+.++...+.+.+++||+-++|
T Consensus       207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k  250 (269)
T PF06800_consen  207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK  250 (269)
T ss_pred             HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence            88999999999999999999999999999999999999999888

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.00022  Score=62.06  Aligned_cols=201  Identities=13%  Similarity=0.054  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccCC----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHH
Q 024734           36 NLVFVFYSKAFASLVLLPASLLFHRSQ----IP--PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPG  109 (263)
Q Consensus        36 p~~~~~~R~~~a~l~l~~~~~~~~~~~----~~--~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv  109 (263)
                      |..+..++.++...+.+.+.....+-+    .+  +++.+.-....-+.+.-.+.-.+-.+.++|.+++---+=-.+.-+
T Consensus        61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttv  140 (347)
T KOG1442|consen   61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTV  140 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhh
Confidence            777888888888777666554332211    12  122222122222222212222244567777777654444567889


Q ss_pred             HHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHH
Q 024734          110 FTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFT  189 (263)
Q Consensus       110 ~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~  189 (263)
                      |+.+++++++++|-+..      ...++.+.+.|-.+     |-      |+      +...+.-...|.++.+.|+++-
T Consensus       141 FtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-----Gv------dq------E~~~~~ls~~GvifGVlaSl~v  197 (347)
T KOG1442|consen  141 FTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-----GV------DQ------EGSTGTLSWIGVIFGVLASLAV  197 (347)
T ss_pred             HHHHhHHhhcccccccc------cceeehhheehhee-----cc------cc------ccccCccchhhhHHHHHHHHHH
Confidence            99999999999999988      77777766666543     11      10      1234455578999999999999


Q ss_pred             HHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHccCCCccc--ccCCch-hhHHhhHhhhhcccccc
Q 024734          190 SAWFIVQASILKKFSA-EFIVVFFYCFFVAIQSAILCLVMERDLSSWS--LKPGVR-LVAVLYSVSRSKKKKNV  259 (263)
Q Consensus       190 a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~y~gv~~t~~~~~  259 (263)
                      |+..+..||......| -+..+.|..+.+.+.++|...+.++-...+.  -.+... |..+...|+++=.++|+
T Consensus       198 Alnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyv  271 (347)
T KOG1442|consen  198 ALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYV  271 (347)
T ss_pred             HHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhe
Confidence            9999999998887654 5888999999999999999887665322233  222222 33444666766666654

>TIGR00688 rarD rarD protein

Probab=97.68  E-value=0.0012  Score=57.41  Aligned_cols=105  Identities=11%  Similarity=0.021  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024734           11 GMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-IPPLTLPILSAFFLLGFLGTSSQFFGY   89 (263)
Q Consensus        11 ~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (263)
                      ..+.++++|+...+..|...++  ++.+...... ...++..+.....+... ......++|..++..|+...+++.+++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~  226 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFV  226 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4577899999999999886432  3322222111 11111111111111111 111223477777777876688999999


Q ss_pred             HhhhhcCchhhhhhccchHHHHHHHHHHH
Q 024734           90 AGIYYSSPTLSTALLNLVPGFTFILAIIF  118 (263)
Q Consensus        90 ~al~~~~~~~asil~~~~Pv~~~ll~~~~  118 (263)
                      +++++.|++.++.+.|++|+++.+++.++
T Consensus       227 ~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       227 IAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.54  E-value=0.0038  Score=54.89  Aligned_cols=126  Identities=13%  Similarity=0.050  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 024734           14 MAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQ--IPPLTLPILSAFFLLGFLGTSSQFFGYAG   91 (263)
Q Consensus        14 ~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~a   91 (263)
                      ..++.||..+..=|..   ++|+.+=...-.+.-.+.-+.+.+......  ....+.+++..+...|...+.+..++..|
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a  231 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA  231 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence            4456677777666643   277776666666555555555444443322  11234456677778899889999999999


Q ss_pred             hhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           92 IYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        92 l~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      -+++|-+.-++++|.+|....++++++++|+++.-      |..+.+..-+|..+..
T Consensus       232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999      9999888888887765

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.47  E-value=0.0026  Score=50.41  Aligned_cols=129  Identities=16%  Similarity=0.125  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024734           10 IGMMMAECAHVGLMFAGKAAMSDGMS-NLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFG   88 (263)
Q Consensus        10 l~~l~a~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (263)
                      +..+.+.+.-+....+.-...++ .+ |+.-.++.+..+.+.+..+....+++..++.+.-. ++...-|+++.....+.
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~~~V~~~   81 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGVFFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHHHHHHHH
Confidence            34444445555555444433333 54 99999999999999988887776654222221112 23445788888888888


Q ss_pred             HHhhhhcCchhhhhhccc-hHHHHHHHHHH----HhhhcccccccCccchhhHHHHHHHHHHH
Q 024734           89 YAGIYYSSPTLSTALLNL-VPGFTFILAII----FRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (263)
Q Consensus        89 ~~al~~~~~~~asil~~~-~Pv~~~ll~~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (263)
                      .+...+.+++.+..+.-+ +=+...+++.+    .-++|++++      |.+|.++.++|+.+
T Consensus        82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            999999999999877654 55667777875    356888888      99999999999863

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.45  E-value=0.00033  Score=53.38  Aligned_cols=109  Identities=15%  Similarity=0.113  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHh
Q 024734           13 MMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL-GTSSQFFGYAG   91 (263)
Q Consensus        13 l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a   91 (263)
                      ++..++||.+.++.|.+... .++..-.. |..-....+     +        .++|   +..  .+. +-.+...|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~L-----l--------~n~~---y~i--pf~lNq~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKFL-----L--------LNPK---YII--PFLLNQSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHHH-----H--------HhHH---HHH--HHHHHHHHHHHHHHH
Confidence            45678999999999998643 44433321 322111110     1        0122   211  222 36777889999


Q ss_pred             hhhcCchhhhhhc-cchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734           92 IYYSSPTLSTALL-NLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (263)
Q Consensus        92 l~~~~~~~asil~-~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  147 (263)
                      +.+.+.+.+..+. .+.=++|.+.++++.+|..+++      .++|+++.++|+.+.
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            9999999999885 6788899999999988888888      999999999998653

Many members are annotated as potential transmembrane proteins.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.33  E-value=0.0017  Score=58.18  Aligned_cols=121  Identities=17%  Similarity=0.126  Sum_probs=88.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 024734            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL   80 (263)
Q Consensus         1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (263)
                      |+....-|....+.++++-+.....-|....+ .+.   ...|                ++..++.-.|+..+  ..|++
T Consensus         1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~----------------~~~~~~~~l~~~~W--~~G~~   58 (300)
T PF05653_consen    1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR----------------AGSGGRSYLRRPLW--WIGLL   58 (300)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc----------------ccchhhHHHhhHHH--HHHHH
Confidence            67777889999999999999999888876533 111   0000                00000111122112  23444


Q ss_pred             H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      . .++..+.+.++.+.|++..+.+..+.-++..+++..+++||++++      ++.|+.+++.|..++..
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence            4 677788899999999999999999999999999999999999999      99999999999988764

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.16  E-value=0.005  Score=52.68  Aligned_cols=130  Identities=15%  Similarity=0.220  Sum_probs=101.4

Q ss_pred             HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCC
Q 024734           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLP  161 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  161 (263)
                      .+++.-...++++.|=-...+=-.+-|+=++++++.+.|++-+|+      +..-+...+.|+.+.. ++.+..      
T Consensus        96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv------  162 (337)
T KOG1580|consen   96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKV------  162 (337)
T ss_pred             HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-cccccc------
Confidence            677777888999998888888888999999999999999999999      8888899999998754 332211      


Q ss_pred             CCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHcc
Q 024734          162 PNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMER  230 (263)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~  230 (263)
                            .+..+....+|.++.++|--.=++....+.++.+.+. ...+++++..+++.+......+++++
T Consensus       163 ------~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE  226 (337)
T KOG1580|consen  163 ------GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE  226 (337)
T ss_pred             ------CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh
Confidence                  0223445568999999998888888999888776543 36889999999998777665555554

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.15  E-value=0.035  Score=49.21  Aligned_cols=173  Identities=19%  Similarity=0.183  Sum_probs=117.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHH
Q 024734           35 SNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFIL  114 (263)
Q Consensus        35 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll  114 (263)
                      +|..+.+.+-+.+.++-..+.  +.++.. ....+.|+.....++.+.+...+.+.+++|.+=-.-.+--.+=-+=+++.
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlm  126 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAML--KWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLM  126 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH--hccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHH
Confidence            466677777767766554433  323222 12233445677788888888899999999987555444434333335678


Q ss_pred             HHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024734          115 AIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFI  194 (263)
Q Consensus       115 ~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v  194 (263)
                      +.++.+.|.+.+      +-+-..+.-.|+.+....+... +     .     ......+...|.+++...-+.=+..+.
T Consensus       127 g~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s-----~-----~~~g~~ns~~G~~Ll~~~L~fDgfTn~  189 (327)
T KOG1581|consen  127 GTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-S-----S-----SKSGRENSPIGILLLFGYLLFDGFTNA  189 (327)
T ss_pred             HHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-C-----c-----cccCCCCchHhHHHHHHHHHHHhhHHh
Confidence            999999999999      7777777777876655432211 0     0     011234567899999988888888999


Q ss_pred             HHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHH
Q 024734          195 VQASILKKFS-AEFIVVFFYCFFVAIQSAILCLV  227 (263)
Q Consensus       195 ~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~  227 (263)
                      .++++.++.. ++..++++..+++++........
T Consensus       190 tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~  223 (327)
T KOG1581|consen  190 TQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLIL  223 (327)
T ss_pred             HHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhc
Confidence            9999988643 37999999999999888776443

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.10  E-value=0.0026  Score=48.36  Aligned_cols=65  Identities=14%  Similarity=0.223  Sum_probs=56.2

Q ss_pred             HHHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           78 GFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        78 g~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      .+.+ .+.+.++..++++.|.+.|=.+ ....-+.+.+.++++++|++++.      +++|+.+.++|++.+.
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3444 6778888999999999988766 55777888999999999999999      9999999999999875

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.07  E-value=0.0024  Score=49.34  Aligned_cols=66  Identities=17%  Similarity=0.153  Sum_probs=56.9

Q ss_pred             HHHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           78 GFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        78 g~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      .+.. .+++.++..++++.|.+.|=.+ ....-+.+.++++++++|++++.      +++|+.+.++|++.+..
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            3444 6888899999999999988766 45788889999999999999999      99999999999988753

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.01  E-value=0.0023  Score=57.46  Aligned_cols=138  Identities=14%  Similarity=0.218  Sum_probs=109.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHHHHH-HHHHHhccCCC---C--CCCHHHHHHH
Q 024734            4 VGLAPVIGMMMAECAHVGLMFAGKAAM---SDGMSNLVFVFYSKAFASLVLL-PASLLFHRSQI---P--PLTLPILSAF   74 (263)
Q Consensus         4 ~~~~~~l~~l~a~~~wg~~~~~~k~~~---~~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~   74 (263)
                      -++.|....+.+.+..+.-.++.|..+   +++.++..+..+-.-++...++ |+....++...   .  ..+...+ ..
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~  238 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-IL  238 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HH
Confidence            467899999999999999999999987   4459999999999999999998 88776554322   1  1122222 23


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           75 FLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        75 ~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      .+...+..+.+...|..+.+++|-.-++....==.++.+.++.+++|+.++.      +..|.++++.|+.+=.
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            3344455778888999999999998888887777777888999999999999      9999999999998643

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.90  E-value=0.023  Score=43.12  Aligned_cols=60  Identities=13%  Similarity=0.110  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734           82 TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  147 (263)
                      ..++.+...++++.|.+.+=.+ ....-+.+.+.++++++|++++.      |++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            6777888999999999988655 55777888899999999999999      999999999999875

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.0042  Score=46.66  Aligned_cols=61  Identities=13%  Similarity=0.098  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           82 TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      ..++.+.-.++++.|.+.|=.+ ....-+.+.+.++++++|+.+..      +++|+.+.++|++.+.
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            6778889999999999988644 66788889999999999999999      9999999999998764

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.89  E-value=0.066  Score=48.82  Aligned_cols=145  Identities=14%  Similarity=0.007  Sum_probs=88.2

Q ss_pred             cchHHHHHHHHHHHHHHHHH-------HHHHHHhhCCCChHHHHHHHHH---HHHHHHH-HHHHHh--ccCCC-----CC
Q 024734            4 VGLAPVIGMMMAECAHVGLM-------FAGKAAMSDGMSNLVFVFYSKA---FASLVLL-PASLLF--HRSQI-----PP   65 (263)
Q Consensus         4 ~~~~~~l~~l~a~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~~~--~~~~~-----~~   65 (263)
                      +..|+++.++++.+..+...       +..+.+.+.+.+|.....-.+.   ++.++.- .++.++  ++++.     ++
T Consensus       171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence            34789999999999888887       5555544456777766655554   4444332 222322  21211     11


Q ss_pred             CC----HHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhh---hc-cchHHHHHHHHHHHhhhcccccccCccchhhHH
Q 024734           66 LT----LPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTA---LL-NLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGT  137 (263)
Q Consensus        66 ~~----~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asi---l~-~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~  137 (263)
                      .+    .|+.....+.|++-...+.++..+-...+.+.+.+   +. .+.-++..+.+. ++||+-+-.|..-+.-++|+
T Consensus       251 ~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~  329 (345)
T PRK13499        251 LAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGC  329 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHH
Confidence            12    22322224445555777778888888886666655   65 444477777777 59999883333333468899


Q ss_pred             HHHHHHHHHhhh
Q 024734          138 IVLITGAFIMTY  149 (263)
Q Consensus       138 ~l~~~Gv~li~~  149 (263)
                      ++.++|..++..
T Consensus       330 vliI~g~~lig~  341 (345)
T PRK13499        330 VVIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHHhh
Confidence            999999888763

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.84  E-value=0.0072  Score=45.56  Aligned_cols=64  Identities=9%  Similarity=-0.039  Sum_probs=55.3

Q ss_pred             HHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           79 FLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        79 ~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      +.+ ..++.+...++++.|.+.+=.+ ....-+.+.+.++++++|++++.      |++|+.+.++|++.+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            344 6788889999999999988655 55788888999999999999999      9999999999998764

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.83  E-value=0.00088  Score=58.16  Aligned_cols=135  Identities=13%  Similarity=0.099  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024734            7 APVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQF   86 (263)
Q Consensus         7 ~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   86 (263)
                      ++..+.+..++.=+..++..|.. .+..+....+.+=.+++.+.-+..+...+.-.. ...+|||+....+|+++.+.|.
T Consensus       191 ~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P~cgkdr~l~~~lGvfgfigQI  268 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQL-PHCGKDRWLFVNLGVFGFIGQI  268 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhccceec-CccccceEEEEEehhhhhHHHH
Confidence            44566666667667777777764 334666666655555555544443333332223 3356777777789999999999


Q ss_pred             HHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           87 FGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        87 ~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      +...|++.--++..++..++.-++..+..+++++|.+++.      .|.|+++.+...+....
T Consensus       269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence            9999999999999999999999999999999999999999      99999888777766653

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.68  E-value=0.02  Score=52.05  Aligned_cols=139  Identities=14%  Similarity=0.173  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHHHHHHHHHHHhccC--CC-CCCCHHHHHHHHHHHH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMSD---GMSNLVFVFYSKAFASLVLLPASLLFHRS--QI-PPLTLPILSAFFLLGF   79 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~~~~~~~~~--~~-~~~~~~~~~~~~~~g~   79 (263)
                      ..|-++.+++++.+|......|.-.++   ++|--.+-++-.++..++++|..+....-  ++ .-.+..+...+++.++
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l  325 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL  325 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence            678899999999999999999875432   37777777888888888888765543321  11 1112222334567788


Q ss_pred             HH-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhc
Q 024734           80 LG-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYY  150 (263)
Q Consensus        80 ~~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~  150 (263)
                      ++ .+.-++|..|.-.|++-.+++=+.+.--..++...++.+.++++.      .++|.+..+.|-+++...
T Consensus       326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheecc
Confidence            88 899999999999999999998777655558889999999999999      999999999999887643

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.65  E-value=0.00047  Score=59.12  Aligned_cols=183  Identities=11%  Similarity=0.094  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF   87 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (263)
                      .++..++-++.||+...+....   +=+|.+-.. -..++++++....++. .  .|..+.+.+..-++.|.+....|..
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~l-GtT~GALifaiiv~~~-~--~p~~T~~~~iv~~isG~~Ws~GQ~~   75 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTL-GTTLGALIFAIIVFLF-V--SPELTLTIFIVGFISGAFWSFGQAN   75 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhh-hccHHHHHHHHHHhee-e--cCccchhhHHHHHHhhhHhhhhhhh
Confidence            4667788899999988776542   244555442 2334444444444333 2  2344666655556667777899999


Q ss_pred             HHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCc
Q 024734           88 GYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSL  166 (263)
Q Consensus        88 ~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  166 (263)
                      +|-++++.+++.+..+++ ..-+-+.+++++.+||-.+..+..  ...+++++.++|+.+-. .+        ||.|.  
T Consensus        76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~I--lG~iAliliviG~~lTs-~~--------~~~nk--  142 (288)
T COG4975          76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQII--LGFIALILIVIGIYLTS-KQ--------DRNNK--  142 (288)
T ss_pred             hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHH--HHHHHHHHHHHhheEee-ee--------ccccc--
Confidence            999999999999998866 777888899999999988776210  01223344444443322 11        11110  


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 024734          167 QVFMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYC  214 (263)
Q Consensus       167 ~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~  214 (263)
                       +.++.++.-.|....+.|.++|-.|.++.+...  .+ ..+...-|.
T Consensus       143 -~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v~-g~saiLPqA  186 (288)
T COG4975         143 -EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--VD-GLSAILPQA  186 (288)
T ss_pred             -cccChHhhhhheeeeeeeccceeeeEeeecccc--cc-chhhhhHHH
Confidence             112334455688888889999999998876553  32 444444443

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.45  E-value=0.0086  Score=44.06  Aligned_cols=52  Identities=17%  Similarity=0.059  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhhhhcCchhhhh-hccchHHHHHHHHHHHhhhcccccccCccchhhHHHH
Q 024734           82 TSSQFFGYAGIYYSSPTLSTA-LLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIV  139 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asi-l~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l  139 (263)
                      ..++.++..++++.|.+.+=. ...+..+.+.+.++++++|+++.+      |+.|+.+
T Consensus        40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            677789999999999999954 466899999999999999999999      9998765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00803 nst UDP-galactose transporter

Probab=96.09  E-value=0.029  Score=47.69  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHH
Q 024734           79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAF  145 (263)
Q Consensus        79 ~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  145 (263)
                      +.+...+.+..+.+++.++..-+....+.++++.+++.++++|+++..      ++.|..+.+.|+.
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            344667778899999999999999999999999999999999999999      9999999888764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=95.99  E-value=0.0079  Score=45.38  Aligned_cols=70  Identities=16%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCchhhHHhhHhhhhccccccc
Q 024734          187 VFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKKNVC  260 (263)
Q Consensus       187 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~gv~~t~~~~~~  260 (263)
                      ++|+.+.+..|+..++.| +...++++...+++ .++.....+...  ....+...+..+++.+++++++++.+
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHH
Confidence            468999999999999986 99999999999998 777766655432  11222244677888888888877764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.83  E-value=0.22  Score=39.92  Aligned_cols=136  Identities=11%  Similarity=-0.023  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQ   85 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (263)
                      ...++..+.+.++-.....+.-...+..=+|+.-.+..+..+...+..+.+..++++.....++..++...-|+++..+-
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v   83 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV   83 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence            34445555555554444444433323313599999999999999888888774443332211222233455567765554


Q ss_pred             HHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHH-h---hhcccccccCccchhhHHHHHHHHHHHh
Q 024734           86 FFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIF-R---VEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (263)
Q Consensus        86 ~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~-~---~e~~~~~~~~~~~~~~g~~l~~~Gv~li  147 (263)
                      ........+.+++....+ ..-+=+...+++.+= +   ++++++.      +++|+++.++|+.++
T Consensus        84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~  144 (150)
T COG3238          84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA  144 (150)
T ss_pred             hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence            455556666666665544 334555556666552 2   2566666      999999999995543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.73  E-value=0.027  Score=48.32  Aligned_cols=106  Identities=15%  Similarity=0.190  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHH
Q 024734           36 NLVFVFYSKAFASLVLLPASLLFHRSQI----PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFT  111 (263)
Q Consensus        36 p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~  111 (263)
                      ...+.++-.+-+.+.+..-.++.++-..    ....+..|+.+...++.+.++|.+.|.-+.+-++-.-|++..+--.|+
T Consensus       202 g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFT  281 (337)
T KOG1580|consen  202 GTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFT  281 (337)
T ss_pred             chhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHH
Confidence            3445555555555555544333322110    112345667788888888999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734          112 FILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (263)
Q Consensus       112 ~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  147 (263)
                      ++.++++++++++.+      ||+|.++.|.|...=
T Consensus       282 il~SVllf~npls~r------QwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  282 ILISVLLFNNPLSGR------QWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence            999999999999999      999999999987653

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.0012  Score=58.69  Aligned_cols=121  Identities=16%  Similarity=0.155  Sum_probs=88.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 024734            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFL   80 (263)
Q Consensus         1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (263)
                      |+.++..|....+...++.|.+++.-|....+ ...   ...|.              ++...+.+  |++  ....|++
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~ra--------------~~gg~~yl--~~~--~Ww~G~l   72 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLRA--------------GEGGYGYL--KEP--LWWAGML   72 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hcccc--------------cCCCcchh--hhH--HHHHHHH
Confidence            45566777777888888888888888876543 111   11111              11111122  221  2234556


Q ss_pred             H-HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           81 G-TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        81 ~-~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      - ..+...-|.+..+.|++..+.+..+.-+..++++..+++||+++.      ..+|++++++|..++..
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence            6 777788899999999999999999999999999999999999999      99999999999988764

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.69  E-value=0.19  Score=44.72  Aligned_cols=112  Identities=15%  Similarity=0.136  Sum_probs=92.1

Q ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHhccCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccc
Q 024734           31 SDGMSNLVFVFYSKAFASLVLLPASLLFHRSQI----PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNL  106 (263)
Q Consensus        31 ~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~  106 (263)
                      ..+++++++.+.-.+...+.-......++....    .+.+++.++.++..+..++.+|.+.|+-+..-++-.-+.++.+
T Consensus       197 ~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~tt  276 (327)
T KOG1581|consen  197 KYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTT  276 (327)
T ss_pred             cCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHH
Confidence            455999999998888888877666444332211    2456777777888899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734          107 VPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus       107 ~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      ==++.++++.+.+++++++.      +|.|+.+.|.|+.+=.
T Consensus       277 Rk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  277 RKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence            99999999999999999999      9999999999887643

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=95.09  E-value=0.95  Score=41.04  Aligned_cols=183  Identities=15%  Similarity=0.081  Sum_probs=108.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhcc-CCC----CCCCHHHHHHHH
Q 024734            1 MGKVGLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHR-SQI----PPLTLPILSAFF   75 (263)
Q Consensus         1 ~~~~~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~----~~~~~~~~~~~~   75 (263)
                      |+++-..+++...++.+.=|+.++-.|...+-+...+-++   ..+-+-++.|+....-. +..    ...+...+....
T Consensus         1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~   77 (344)
T PF06379_consen    1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTF   77 (344)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHH
Confidence            7778889999999999999999999998765433333333   33333344443332111 111    122334445556


Q ss_pred             HHHHHHHHHHHHHHHhhhhcCchhhhh-hccchHHHHHHHHHHHhhhc---ccccccCccchhhHHHHHHHHHHHhhhcc
Q 024734           76 LLGFLGTSSQFFGYAGIYYSSPTLSTA-LLNLVPGFTFILAIIFRVEK---LDWRSSSSLAKSVGTIVLITGAFIMTYYK  151 (263)
Q Consensus        76 ~~g~~~~~~~~~~~~al~~~~~~~asi-l~~~~Pv~~~ll~~~~~~e~---~~~~~~~~~~~~~g~~l~~~Gv~li~~~~  151 (263)
                      +.|++-......|=.+++|.+.+...- ...+.-++..++-.++.++-   ++.  .-.+..++|++++++|+.++....
T Consensus        78 l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~--~~g~~vL~Gv~v~LiGIai~g~AG  155 (344)
T PF06379_consen   78 LFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLAT--PSGQIVLLGVAVCLIGIAICGKAG  155 (344)
T ss_pred             HHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccC--CCchhhhhHHHHHHHHHHHHhHHH
Confidence            677777777778889999998887653 34455555555544443211   110  112338999999999999876321


Q ss_pred             CCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 024734          152 GPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCVFTSAWFIVQ  196 (263)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~  196 (263)
                      ...     ||..   .++..+.+.-.|.+.++.|.+.=|..+.-.
T Consensus       156 ~~K-----e~~~---~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~  192 (344)
T PF06379_consen  156 SMK-----EKEL---GEEAKEFNFKKGLIIAVLSGVMSACFNFGL  192 (344)
T ss_pred             Hhh-----hhhh---ccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            100     0100   011223345579999999988777766543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=94.71  E-value=0.43  Score=40.76  Aligned_cols=150  Identities=13%  Similarity=0.134  Sum_probs=101.8

Q ss_pred             HHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCccc
Q 024734           89 YAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQV  168 (263)
Q Consensus        89 ~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~  168 (263)
                      --+++|.+...-++.-++..+.++.....+++.|++-.      +....++.+..-+.-.. .+-+..            
T Consensus        86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w-~D~q~~------------  146 (309)
T COG5070          86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATW-GDQQAS------------  146 (309)
T ss_pred             ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhcc-chhhHH------------
Confidence            46788999999999999999999999999999999998      88888776665544331 111000            


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCchhHHHHHHHHHHHHHHHHHHHHHccC-CCccccc-CCchhh
Q 024734          169 FMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKK--FSAEFIVVFFYCFFVAIQSAILCLVMERD-LSSWSLK-PGVRLV  244 (263)
Q Consensus       169 ~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~  244 (263)
                      .........|.+++..-.+.-+.+-+..||..+-  .. ....++|..+.+....+.+.+++|+- +.+.... +.....
T Consensus       147 ~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~  225 (309)
T COG5070         147 AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLM  225 (309)
T ss_pred             HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHH
Confidence            0000122347777888888888888888776652  32 58889999999999999998888752 2222211 223344


Q ss_pred             HHhhHhhhhccccc
Q 024734          245 AVLYSVSRSKKKKN  258 (263)
Q Consensus       245 ~l~y~gv~~t~~~~  258 (263)
                      +++--|+-+-+++|
T Consensus       226 am~ISgl~svgiSy  239 (309)
T COG5070         226 AMFISGLCSVGISY  239 (309)
T ss_pred             HHHHHHHHHhhhhh
Confidence            55566666666655

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=94.13  E-value=1.2  Score=38.87  Aligned_cols=186  Identities=13%  Similarity=0.055  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFF   87 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (263)
                      |+++.+.+++.+|++++=.|.. +. -|++.+-.+-. .+..+...+.....+  .++..+    ...+-|.+...++.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~-~~i~~~g~~v~~~~~--~p~f~p----~amlgG~lW~~gN~~   71 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMC-SGIFLVGLVVNLILG--FPPFYP----WAMLGGALWATGNIL   71 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHH-HHHHHHHHHHHHhcC--CCccee----HHHhhhhhhhcCcee
Confidence            4678899999999999999974 33 67766554443 232222222222222  122222    344556666777777


Q ss_pred             HHHhhhhcCchhhhhhccch-HHHHHHHHHH-HhhhcccccccCccchhhHHHHHHHHHHHhhhccCCccc-ccCCCCCC
Q 024734           88 GYAGIYYSSPTLSTALLNLV-PGFTFILAII-FRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLL-MTSLPPNS  164 (263)
Q Consensus        88 ~~~al~~~~~~~asil~~~~-Pv~~~ll~~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~-~~~~~~~~  164 (263)
                      -.-.++..+.+.+-.+=++. -+..-..+.+ +++++.+..+.+ ....+|++++++|..+..+-+..... ..++++++
T Consensus        72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~-~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~  150 (254)
T PF07857_consen   72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSP-WLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETP  150 (254)
T ss_pred             ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchh-HHHHHHHHHHHHHHHheeeecCCCCCccccccccc
Confidence            78888888888888775543 3333333433 344333322211 22788999999988776543322110 00000000


Q ss_pred             -------Ccc-------cCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024734          165 -------SLQ-------VFM------PQTNWVFGGLLLAVDCVFTSAWFIVQASILKKF  203 (263)
Q Consensus       165 -------~~~-------~~~------~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~  203 (263)
                             +.+       +.+      ...+...|.++++.+++.|+...+=.....++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  151 LSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             cccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence                   000       000      011367899999999999999877666655553

The region concerned is approximately 280 residues long.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=93.57  E-value=0.36  Score=37.99  Aligned_cols=54  Identities=17%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc-----C-chhHHHHHHHHHHHHHHHHHHHHHccC
Q 024734          178 GGLLLAVDCVFTSAWFIVQASILKKF-----S-AEFIVVFFYCFFVAIQSAILCLVMERD  231 (263)
Q Consensus       178 G~ll~l~aa~~~a~~~v~~k~~~~~~-----~-~~~~~~~~~~~~~~i~~~~~~~~~~~~  231 (263)
                      |..+++.|.++.+++.+..|+..++.     . ++.++..+....+.+..+|..++.|++
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~   60 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP   60 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67889999999999999999988873     2 589999999999999999999888764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=93.37  E-value=1.3  Score=39.15  Aligned_cols=139  Identities=19%  Similarity=0.218  Sum_probs=90.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHH-HHhhCCCChHHHHHHHHHHHHHHH----HHHHHHhccCC---CCCCCHHHHHHH
Q 024734            3 KVGLAPVIGMMMAECAHVGLMFAGK-AAMSDGMSNLVFVFYSKAFASLVL----LPASLLFHRSQ---IPPLTLPILSAF   74 (263)
Q Consensus         3 ~~~~~~~l~~l~a~~~wg~~~~~~k-~~~~~~~~p~~~~~~R~~~a~l~l----~~~~~~~~~~~---~~~~~~~~~~~~   74 (263)
                      ++-+.|-++.+.+.++-+.-+++=. .....+++|.+.+++..+++..++    .|+..+.-.+.   .++..+.||...
T Consensus       172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~  251 (372)
T KOG3912|consen  172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA  251 (372)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence            4456788999999999999888763 344456999999999998884433    33332221111   134444554433


Q ss_pred             H---------HHHHHH-HHHHHH-HHHh---hhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHH
Q 024734           75 F---------LLGFLG-TSSQFF-GYAG---IYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVL  140 (263)
Q Consensus        75 ~---------~~g~~~-~~~~~~-~~~a---l~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~  140 (263)
                      +         .+...+ ...-.+ .|.|   -|+.++++=.++=.+--.+.-+++.....|+++..      ++.|.++-
T Consensus       252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliL  325 (372)
T KOG3912|consen  252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLIL  325 (372)
T ss_pred             HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHH
Confidence            2         122222 111111 2223   34457777777777777788888999999999999      99999999


Q ss_pred             HHHHHHh
Q 024734          141 ITGAFIM  147 (263)
Q Consensus       141 ~~Gv~li  147 (263)
                      +.|+.+-
T Consensus       326 i~Gi~lY  332 (372)
T KOG3912|consen  326 IMGIILY  332 (372)
T ss_pred             HHHHHHH
Confidence            9999763

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.19  E-value=1.2  Score=39.95  Aligned_cols=137  Identities=14%  Similarity=0.173  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHhccCC-----CC-CCCHHHHHHHHHHH
Q 024734            6 LAPVIGMMMAECAHVGLMFAGKAAMS-DGMSNLVFVFYSKAFASLVLLPASLLFHRSQ-----IP-PLTLPILSAFFLLG   78 (263)
Q Consensus         6 ~~~~l~~l~a~~~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~-~~~~~~~~~~~~~g   78 (263)
                      ..||.++...++.=+......|.-.+ .+..-+.++++..+.+.+.+.....+.+...     .+ -.+.+.+....+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            45788888888888888888887653 3366678889999999888888776554311     00 11233445556667


Q ss_pred             HHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhh
Q 024734           79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMT  148 (263)
Q Consensus        79 ~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~  148 (263)
                      +++..-..+.++..+..++..-++.....-..+.+....+++++.++.      ..+|+.+++.|-++=.
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            777666778888999999988888886666667777777888999999      9999999999887644

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=93.06  E-value=2.1  Score=38.28  Aligned_cols=137  Identities=18%  Similarity=0.171  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHHHHHHHHHHHhccCCC-------CCCC----HH
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDG----MSNLVFVFYSKAFASLVLLPASLLFHRSQI-------PPLT----LP   69 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-------~~~~----~~   69 (263)
                      +..|......+.++=|.-+.+.+..+++.    -+|++..+.-.-.-.+.++|..+..++...       ...+    .+
T Consensus       162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r  241 (349)
T KOG1443|consen  162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR  241 (349)
T ss_pred             eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence            45677888888888888888888877542    346666655555556666676666654322       0111    22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734           70 ILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (263)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  147 (263)
                      ....+...|.+.++--..-|.-+..|+.-..++..-.-=+.+.+++....+|+++..      .|.|+.++..|+..=
T Consensus       242 v~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  242 VIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence            223333333333222223344455566666666666677889999999999999998      999999999999763

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=92.99  E-value=2.5  Score=36.71  Aligned_cols=128  Identities=13%  Similarity=-0.025  Sum_probs=78.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH-HHHHHHHHHHHHHHhccCCC-CCCCHHHHHHHHHHHHHH-
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSDGMSNLVFVFYS-KAFASLVLLPASLLFHRSQI-PPLTLPILSAFFLLGFLG-   81 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~~~~p~~~~~~R-~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~-   81 (263)
                      ...|+++.+.++++-|...+..-..+.++-.|+...-.+ ...+.++-++.....+..+. ...-.+.+-.....-++. 
T Consensus       112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~  191 (244)
T PF04142_consen  112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ  191 (244)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence            457888999999999999999855444333344333333 34444444443333222111 111111111111222222 


Q ss_pred             HHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHH
Q 024734           82 TSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTI  138 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~  138 (263)
                      +..-...-.-+||.+.-.=..-....-+++.++++.+++.+++..      ..+|..
T Consensus       192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~  242 (244)
T PF04142_consen  192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA  242 (244)
T ss_pred             HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence            445555667789998888888888899999999999999999988      776654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.24  E-value=0.24  Score=42.81  Aligned_cols=77  Identities=18%  Similarity=0.142  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734           67 TLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (263)
Q Consensus        67 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (263)
                      ++..| .-..-|+.....+.+++++-+..+.+.+--++.+.-+...+-+.++++||-++|.+..  -++|+++.+.|..+
T Consensus       206 ~K~t~-~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~--v~iGiilivvgai~  282 (288)
T COG4975         206 NKYTW-LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVY--VIIGIILIVVGAIL  282 (288)
T ss_pred             HHHHH-HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhh--hhhhHHHHHHHhhh
Confidence            44444 3456677778899999999999988888888888888889999999999999993210  23444444555544

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=88.69  E-value=8.5  Score=28.94  Aligned_cols=113  Identities=14%  Similarity=0.129  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCC----h--HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHH
Q 024734            8 PVIGMMMAECAHVGLMFAGKAAMSDGMS----N--LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLG   81 (263)
Q Consensus         8 ~~l~~l~a~~~wg~~~~~~k~~~~~~~~----p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (263)
                      ....++...++||...++.|.... +++    |  ....++|-               -+.. ..+++.+. -+   .++
T Consensus         4 ~~~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe---------------~~tl-~l~w~Y~i-PF---llN   62 (125)
T KOG4831|consen    4 DMDKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQE---------------MKTL-FLNWEYLI-PF---LLN   62 (125)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHH---------------HHHH-HHhHHHHH-HH---HHH
Confidence            345678889999999999998742 121    1  12222221               1100 11232221 11   234


Q ss_pred             HHHHHHHHHhhhhcCchhhhhhcc-chHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHh
Q 024734           82 TSSQFFGYAGIYYSSPTLSTALLN-LVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIM  147 (263)
Q Consensus        82 ~~~~~~~~~al~~~~~~~asil~~-~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li  147 (263)
                      -++..+|+.-+++++-+.+.-+.+ +.-.|+.+.+..+..|...++      .++|+.+..+|+-+.
T Consensus        63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC  123 (125)
T ss_pred             HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence            567778999999999999997755 677789999988887777777      899999999998664

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=88.20  E-value=3.2  Score=36.68  Aligned_cols=171  Identities=15%  Similarity=0.105  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCchhhhhhccchHHHHHHHH
Q 024734           37 LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYY-SSPTLSTALLNLVPGFTFILA  115 (263)
Q Consensus        37 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~-~~~~~asil~~~~Pv~~~ll~  115 (263)
                      ..+++-++++-+.--++.---. ...+++.+.|++...  ..++ +..+.+-.+++++ ++...=-++-.-.++-++.++
T Consensus        34 NLITFaqFlFia~eGlif~skf-~~~k~kiplk~Y~i~--V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g  109 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSKF-FTVKPKIPLKDYAIT--VAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG  109 (330)
T ss_pred             eehHHHHHHHHHHhceeeeccc-cccCCCCchhhhhee--hhee-eeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence            4566666655544333221000 111256666664322  2222 4555666778877 455555566667899999999


Q ss_pred             HHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccC---CCCchHHHHHHHHHHHHHHHHHH
Q 024734          116 IIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVF---MPQTNWVFGGLLLAVDCVFTSAW  192 (263)
Q Consensus       116 ~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~G~ll~l~aa~~~a~~  192 (263)
                      +++.++|-+.+      |...+...=+|+++.+.......   +++ .++++++   .....+..|+.+...|-+.-|.-
T Consensus       110 ~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~---~~~-~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m  179 (330)
T KOG1583|consen  110 WILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDG---RSK-LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM  179 (330)
T ss_pred             HHhccceeehh------hhhhHHhhhhhheeEEeecCcch---hhh-hcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999      99999999999988775433221   111 1111112   23345678988888888877777


Q ss_pred             HHHHHHHHhhcC-chhHHHHHHHHHHHHHH
Q 024734          193 FIVQASILKKFS-AEFIVVFFYCFFVAIQS  221 (263)
Q Consensus       193 ~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~  221 (263)
                      .+.+...-++++ ++-+.++|.=..+...+
T Consensus       180 giyqE~~Y~kyGKh~~EalFytH~LsLP~F  209 (330)
T KOG1583|consen  180 GIYQETTYQKYGKHWKEALFYTHFLSLPLF  209 (330)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhccchH
Confidence            777766666654 36778888776664433

>COG2510 Predicted membrane protein [Function unknown]

Probab=88.14  E-value=2.1  Score=33.45  Aligned_cols=76  Identities=11%  Similarity=-0.049  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHccCCCcccccCCchhhHHhhHhhhhcccc
Q 024734          179 GLLLAVDCVFTSAWFIVQASILKKFSAEFIVVFFYCFFVAIQSAILCLVMERDLSSWSLKPGVRLVAVLYSVSRSKKKK  257 (263)
Q Consensus       179 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~gv~~t~~~  257 (263)
                      ..+++++++.+++..+..|--.++.+ |-..++...++..+....+.+..++.... .......|..++.-| +.++++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k~~lflilSG-la~gls   80 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPKSWLFLILSG-LAGGLS   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcceehhhhHHH-HHHHHH
Confidence            57899999999999999998888785 77788888888887777777766542111 112335566666666 444433

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=87.98  E-value=4.5  Score=35.73  Aligned_cols=110  Identities=15%  Similarity=0.204  Sum_probs=83.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhccCC--C---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchH
Q 024734           34 MSNLVFVFYSKAFASLVLLPASLLFHRSQ--I---PPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVP  108 (263)
Q Consensus        34 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~P  108 (263)
                      -+..+++++...++.++++......++-.  +   ...+.|.....++.+..+.+++.+..--++.-++..++.+...--
T Consensus       218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK  297 (367)
T KOG1582|consen  218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK  297 (367)
T ss_pred             CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence            56678888888888888877766654321  1   133556666777777777666666666666778889999999899


Q ss_pred             HHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734          109 GFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus       109 v~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      -.|+++|++++.++++..      ..-|..+.+.|+.+-..
T Consensus       298 avTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  298 AVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             HHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence            999999999999999999      88888888999977543

>TIGR00803 nst UDP-galactose transporter

Probab=85.16  E-value=9.7  Score=32.05  Aligned_cols=96  Identities=10%  Similarity=0.010  Sum_probs=57.5

Q ss_pred             hhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcc----------cccCCCCCCCccc
Q 024734           99 LSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHL----------LMTSLPPNSSLQV  168 (263)
Q Consensus        99 ~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~----------~~~~~~~~~~~~~  168 (263)
                      ......+..|+++++.++...+||.+..      |+++.++...|++.-...+....          ..+.+.. ++  .
T Consensus         6 a~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~-~~--~   76 (222)
T TIGR00803         6 IHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS-SA--K   76 (222)
T ss_pred             chHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC-Cc--c
Confidence            3445566788888888888888888877      88888888888865322111000          0000000 00  0


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024734          169 FMPQTNWVFGGLLLAVDCVFTSAWFIVQASILKKF  203 (263)
Q Consensus       169 ~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~  203 (263)
                      .....+...|....+.+..+=+...+.+++..++.
T Consensus        77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~  111 (222)
T TIGR00803        77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG  111 (222)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence            01123556777777777777777888877765543

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.99  E-value=2  Score=38.00  Aligned_cols=142  Identities=20%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHHHHHHHHHHhccCCC----CCC-CHHHHHHHHHHH
Q 024734            5 GLAPVIGMMMAECAHVGLMFAGKAAMSD-GMSNLVFVFYSKAFASLVLLPASLLFHRSQI----PPL-TLPILSAFFLLG   78 (263)
Q Consensus         5 ~~~~~l~~l~a~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~g   78 (263)
                      .+.|.++-+.+.+.-+.+.+..|..+.. +=.-+.+.++..+.+.++.+|...+.+.-+.    ++. ..+.|..+.+.|
T Consensus       183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg  262 (347)
T KOG1442|consen  183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG  262 (347)
T ss_pred             chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence            3678888888999899999999975432 1124678889999999999998877654221    233 456666667777


Q ss_pred             HHHHHHHHHHHHhhhhcCchhhhhhccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccC
Q 024734           79 FLGTSSQFFGYAGIYYSSPTLSTALLNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKG  152 (263)
Q Consensus        79 ~~~~~~~~~~~~al~~~~~~~asil~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~  152 (263)
                      ++|+.-...-.+=+|-|+|-.=.+=...-..--.+++..+++|.-+..      .|-+-++...|...-+.-++
T Consensus       263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~vk~  330 (347)
T KOG1442|consen  263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTLVKE  330 (347)
T ss_pred             HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHHHHH
Confidence            777322223344456665544333333444556788999999999999      88888888888876654333

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=83.68  E-value=1.7  Score=38.25  Aligned_cols=176  Identities=13%  Similarity=0.117  Sum_probs=106.0

Q ss_pred             CCCCh--HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhcc--ch
Q 024734           32 DGMSN--LVFVFYSKAFASLVLLPASLLFHRSQIPPLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLN--LV  107 (263)
Q Consensus        32 ~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~--~~  107 (263)
                      ++..|  |-+++.++++-..+-+.-.... +.+++..++|..   ..++.+-...+.+..-++.|.+=-.-.+.-.  +.
T Consensus        69 ~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rtY---~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKli  144 (367)
T KOG1582|consen   69 EGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRTY---VILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLI  144 (367)
T ss_pred             ccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhHh---hhhHhhhhhccccCcCccccccCcHHHHHHhhhhh
Confidence            34554  4677777766544333322111 222234556542   2233333444455555566654333333333  34


Q ss_pred             HHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhhccCCcccccCCCCCCCcccCCCCchHHHHHHHHHHHHH
Q 024734          108 PGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTYYKGPHLLMTSLPPNSSLQVFMPQTNWVFGGLLLAVDCV  187 (263)
Q Consensus       108 Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~  187 (263)
                      |+  ++.+.+.-+.|-.+.      +.++..+..+|..+.+..+..                .+.+.+..|....-.|-+
T Consensus       145 PV--miggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~----------------~sPNF~~~Gv~mIsgALl  200 (367)
T KOG1582|consen  145 PV--MIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ----------------TSPNFNLIGVMMISGALL  200 (367)
T ss_pred             hh--hheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc----------------cCCCcceeeHHHHHHHHH
Confidence            54  566788888888888      999999999999887653221                122233568777777777


Q ss_pred             HHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHccCCCcc
Q 024734          188 FTSAWFIVQASILKKFS-AEFIVVFFYCFFVAIQSAILCLVMERDLSSW  235 (263)
Q Consensus       188 ~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  235 (263)
                      +=|.--.+|.|..+..+ +...+++++..+|.+..+......++-.+.|
T Consensus       201 ~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~  249 (367)
T KOG1582|consen  201 ADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAW  249 (367)
T ss_pred             HHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhh
Confidence            77777778888887755 2578888999999888877777666533334

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=82.72  E-value=7.1  Score=33.56  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=80.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhccCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCchhhhhhccchHH
Q 024734           34 MSNLVFVFYSKAFASLVLLPASLLFHRSQIP----PLTLPILSAFFLLGFLGTSSQFFGYAGIYYSSPTLSTALLNLVPG  109 (263)
Q Consensus        34 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~asil~~~~Pv  109 (263)
                      ..-++-.++..+++.++++.+....+.....    ..+.......++.|+....-..+.-+.+.-++++.-+.+..+.-.
T Consensus       183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKl  262 (309)
T COG5070         183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKL  262 (309)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhC
Confidence            4456788999999999999988876643221    222222234555566555555677788888999999999888888


Q ss_pred             HHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHH
Q 024734          110 FTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFI  146 (263)
Q Consensus       110 ~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  146 (263)
                      -..+.+.++++|+.++.      ++..+.+++..-++
T Consensus       263 p~alaGlvffdap~nf~------si~sillGflsg~i  293 (309)
T COG5070         263 PIALAGLVFFDAPVNFL------SIFSILLGFLSGAI  293 (309)
T ss_pred             hHHHhhhhhcCCchhHH------HHHHHHHHHHHHHH
Confidence            88999999999999999      99999998874444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.58
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.5

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.58  E-value=7.9e-07  Score=66.67  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             HHHHHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           76 LLGFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        76 ~~g~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      ..+++. .+++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++++      |++|+.+.++|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            355556 7888999999999999999888 79999999999999999999999      99999999999988763

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.50  E-value=1.9e-07  Score=72.86  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             HHHHHH-HHHHHHHHHhhhhcCchhhhhh-ccchHHHHHHHHHHHhhhcccccccCccchhhHHHHHHHHHHHhhh
Q 024734           76 LLGFLG-TSSQFFGYAGIYYSSPTLSTAL-LNLVPGFTFILAIIFRVEKLDWRSSSSLAKSVGTIVLITGAFIMTY  149 (263)
Q Consensus        76 ~~g~~~-~~~~~~~~~al~~~~~~~asil-~~~~Pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~  149 (263)
                      ..+++. .+++.++..++++.|++.+..+ .++.|+++.++++++++|+++++      +++|+.+.++|+.++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            456666 8899999999999999999988 89999999999999999999999      99999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00