Citrus Sinensis ID: 024738
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 263 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H1R4 | 271 | ABC transporter I family | yes | no | 0.882 | 0.856 | 0.705 | 3e-97 | |
| Q8R7Y4 | 277 | Energy-coupling factor tr | yes | no | 0.779 | 0.740 | 0.413 | 4e-38 | |
| Q1J982 | 279 | Energy-coupling factor tr | yes | no | 0.764 | 0.720 | 0.396 | 6e-38 | |
| P0C0E9 | 279 | Energy-coupling factor tr | yes | no | 0.764 | 0.720 | 0.391 | 8e-38 | |
| P0CZ29 | 279 | Energy-coupling factor tr | yes | no | 0.764 | 0.720 | 0.391 | 8e-38 | |
| A2RH11 | 279 | Energy-coupling factor tr | yes | no | 0.764 | 0.720 | 0.391 | 8e-38 | |
| Q7CMM7 | 279 | Energy-coupling factor tr | N/A | no | 0.764 | 0.720 | 0.391 | 8e-38 | |
| Q5X9B5 | 279 | Energy-coupling factor tr | N/A | no | 0.764 | 0.720 | 0.391 | 8e-38 | |
| P0CZ28 | 279 | Energy-coupling factor tr | N/A | no | 0.764 | 0.720 | 0.391 | 8e-38 | |
| Q1J449 | 279 | Energy-coupling factor tr | yes | no | 0.764 | 0.720 | 0.391 | 8e-38 |
| >sp|Q8H1R4|AB10I_ARATH ABC transporter I family member 10, chloroplastic OS=Arabidopsis thaliana GN=ABCI10 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 354 bits (909), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 165/234 (70%), Positives = 205/234 (87%), Gaps = 2/234 (0%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
VA+EC NL +S++ +Q VPILRDCSF +PSGQLWM+LGPNGCGKSTLLK+LAG++ P+
Sbjct: 38 VAVECRNLCFSVSTRQGISVPILRDCSFRIPSGQLWMILGPNGCGKSTLLKILAGVVNPS 97
Query: 92 NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSN 150
+G V+V++PK+FVFQNPDHQVVMPTVEADVAFGLG ++ +EV+S+V KAL+AVGM +
Sbjct: 98 SGTVFVEKPKNFVFQNPDHQVVMPTVEADVAFGLGKYHDMNQEEVKSRVIKALEAVGMRD 157
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL-GDSG 209
Y+QRP+QTLSGGQKQR+AIAGALAEACKVLLLDELTTFLDESDQ GVI+AVK+L+ G
Sbjct: 158 YMQRPIQTLSGGQKQRIAIAGALAEACKVLLLDELTTFLDESDQMGVIKAVKDLINAKKG 217
Query: 210 EVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERINS 263
+VTALWVTHRLEEL+YADGA YME+G++V D +I +FIK++QSSYI++I S
Sbjct: 218 DVTALWVTHRLEELKYADGAVYMENGRVVRHGDAATISDFIKAKQSSYIDQIGS 271
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8R7Y4|ECFA2_THETN Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=ecfA2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 125/220 (56%), Gaps = 15/220 (6%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I N+++ ++ + K P+L+D + GQ ++G NG GKSTL K LL PT G
Sbjct: 5 IRAQNVSFCYSEGESKSPPVLKDINLQFEKGQFIGIIGHNGSGKSTLAKHFNALLLPTKG 64
Query: 94 HVYVK--------------RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139
+VYVK + VFQNPD+Q+V VE DVAFG NL + +E+R +V
Sbjct: 65 NVYVKDMDTKDAKHLWDIRQTAGLVFQNPDNQIVAAIVEEDVAFGPENLGIPPEEIRKRV 124
Query: 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199
AL AVGM Y P LSGGQKQRVAIAG +A + ++LDE T LD + VI
Sbjct: 125 EYALKAVGMWEYKDFPPHMLSGGQKQRVAIAGIIAMKPECIVLDEPTAMLDPIGRREVIS 184
Query: 200 AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVM 239
+K L + G +T + +TH +EE+ AD M+DGK+V+
Sbjct: 185 TIKKLNKEEG-ITVILITHFMEEVVDADRVIVMDDGKVVL 223
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q1J982|ECFA1_STRPB Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=ecfA1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 157 bits (398), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 130/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE + ++ K Q K P L SF V G+ ++G NG GKST ++++ GLL+P +G
Sbjct: 5 IELKKVTFNYHKDQEK--PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
V V + VFQNPD+Q V TVE DVAFGL N + H++++ +V
Sbjct: 63 SVIVDGDLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL+ VGM N+ ++ LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 HALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+KN+ D ++T + +TH L+E+ +D M+DG++
Sbjct: 183 IKNIRDDY-QLTVISITHDLDEVALSDRVLVMKDGQV 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus pyogenes serotype M12 (strain MGAS2096) (taxid: 370553) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P0C0E9|ECFA_STRPY Energy-coupling factor transporter ATP-binding protein EcfA OS=Streptococcus pyogenes GN=ecfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE + ++ K Q K P L SF V G+ ++G NG GKST ++++ GLL+P +G
Sbjct: 5 IELKKVTFNYHKDQEK--PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V + VFQNPD+Q V TVE DVAFGL N + H++++ +V
Sbjct: 63 SIIVDGDLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL+ VGM N+ ++ LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 HALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+KN+ D ++T + +TH L+E+ +D M+DG++
Sbjct: 183 IKNIRDDY-QLTVISITHDLDEVALSDRVLVMKDGQV 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P0CZ29|ECFA2_STRPQ Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=ecfA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE + ++ K Q K P L SF V G+ ++G NG GKST ++++ GLL+P +G
Sbjct: 5 IELKKVTFNYHKDQEK--PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V + VFQNPD+Q V TVE DVAFGL N + H++++ +V
Sbjct: 63 SIIVDGDLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL+ VGM N+ ++ LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 HALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+KN+ D ++T + +TH L+E+ +D M+DG++
Sbjct: 183 IKNIRDDY-QLTVISITHDLDEVALSDRVLVMKDGQV 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|A2RH11|ECFA2_STRPG Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=ecfA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE + ++ K Q K P L SF V G+ ++G NG GKST ++++ GLL+P +G
Sbjct: 5 IELKKVTFNYHKDQEK--PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V + VFQNPD+Q V TVE DVAFGL N + H++++ +V
Sbjct: 63 SIIVDGDLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL+ VGM N+ ++ LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 HALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+KN+ D ++T + +TH L+E+ +D M+DG++
Sbjct: 183 IKNIRDDY-QLTVISITHDLDEVALSDRVLVMKDGQV 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus pyogenes serotype M5 (strain Manfredo) (taxid: 160491) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q7CMM7|ECFA2_STRP8 Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=ecfA2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE + ++ K Q K P L SF V G+ ++G NG GKST ++++ GLL+P +G
Sbjct: 5 IELKKVTFNYHKDQEK--PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V + VFQNPD+Q V TVE DVAFGL N + H++++ +V
Sbjct: 63 SIIVDGDLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL+ VGM N+ ++ LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 HALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+KN+ D ++T + +TH L+E+ +D M+DG++
Sbjct: 183 IKNIRDDY-QLTVISITHDLDEVALSDRVLVMKDGQV 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q5X9B5|ECFA2_STRP6 Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=ecfA2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE + ++ K Q K P L SF V G+ ++G NG GKST ++++ GLL+P +G
Sbjct: 5 IELKKVTFNYHKDQEK--PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V + VFQNPD+Q V TVE DVAFGL N + H++++ +V
Sbjct: 63 SIIVDGDLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL+ VGM N+ ++ LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 HALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+KN+ D ++T + +TH L+E+ +D M+DG++
Sbjct: 183 IKNIRDDY-QLTVISITHDLDEVALSDRVLVMKDGQV 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P0CZ28|ECFA2_STRP3 Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=ecfA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE + ++ K Q K P L SF V G+ ++G NG GKST ++++ GLL+P +G
Sbjct: 5 IELKKVTFNYHKDQEK--PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V + VFQNPD+Q V TVE DVAFGL N + H++++ +V
Sbjct: 63 SIIVDGDLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL+ VGM N+ ++ LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 HALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+KN+ D ++T + +TH L+E+ +D M+DG++
Sbjct: 183 IKNIRDDY-QLTVISITHDLDEVALSDRVLVMKDGQV 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q1J449|ECFA1_STRPF Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=ecfA1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE + ++ K Q K P L SF V G+ ++G NG GKST ++++ GLL+P +G
Sbjct: 5 IELKKVTFNYHKDQEK--PTLDGVSFHVKQGEWLSIIGHNGSGKSTTIRLIDGLLEPESG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V + VFQNPD+Q V TVE DVAFGL N + H++++ +V
Sbjct: 63 SIIVDGDLLTITNVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIAHEDIKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL+ VGM N+ ++ LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 HALELVGMQNFKEKEPARLSGGQKQRVAIAGAVAMKPKIIILDEATSMLDPKGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+KN+ D ++T + +TH L+E+ +D M+DG++
Sbjct: 183 IKNIRDDY-QLTVISITHDLDEVALSDRVLVMKDGQV 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus pyogenes serotype M4 (strain MGAS10750) (taxid: 370554) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 263 | ||||||
| 224080957 | 241 | predicted protein [Populus trichocarpa] | 0.893 | 0.975 | 0.791 | 1e-107 | |
| 449459220 | 267 | PREDICTED: ABC transporter I family memb | 0.954 | 0.940 | 0.753 | 1e-104 | |
| 449517469 | 267 | PREDICTED: ABC transporter I family memb | 0.954 | 0.940 | 0.75 | 1e-104 | |
| 357464675 | 265 | ABC transporter I family member [Medicag | 0.977 | 0.969 | 0.711 | 1e-103 | |
| 225431461 | 271 | PREDICTED: ABC transporter I family memb | 0.927 | 0.900 | 0.725 | 1e-103 | |
| 261865339 | 358 | hypothetical protein [Beta vulgaris] | 0.878 | 0.645 | 0.774 | 1e-100 | |
| 356516362 | 266 | PREDICTED: ABC transporter I family memb | 0.878 | 0.868 | 0.744 | 1e-99 | |
| 296088545 | 648 | unnamed protein product [Vitis vinifera] | 0.851 | 0.345 | 0.748 | 1e-96 | |
| 297798592 | 272 | ATNAP13 [Arabidopsis lyrata subsp. lyrat | 0.882 | 0.852 | 0.705 | 1e-95 | |
| 22329121 | 271 | ABC transporter I family member 10 [Arab | 0.882 | 0.856 | 0.705 | 2e-95 |
| >gi|224080957|ref|XP_002306244.1| predicted protein [Populus trichocarpa] gi|222855693|gb|EEE93240.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/235 (79%), Positives = 210/235 (89%)
Query: 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88
++ +AIE NLN+SI ++ LVPIL+DCS S+PSGQLWMLLGPNGCGKSTLLK+LAGLL
Sbjct: 7 DNNIAIEGRNLNFSIKTRKGDLVPILKDCSLSIPSGQLWMLLGPNGCGKSTLLKILAGLL 66
Query: 89 KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM 148
PT+G +Y+KRPKSFVFQNPDHQVVMPTVEADV+FGLG LNLT DEV+ V+KALDAVGM
Sbjct: 67 NPTSGTLYLKRPKSFVFQNPDHQVVMPTVEADVSFGLGKLNLTEDEVKCTVSKALDAVGM 126
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
S Y+QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE+DQ GVI+AVKN L S
Sbjct: 127 SAYMQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVKNSLNAS 186
Query: 209 GEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERINS 263
+VTALWVTHRLEELEYADGA YME+GK+V Q DG SI+NFI++RQSSYI RINS
Sbjct: 187 DDVTALWVTHRLEELEYADGALYMENGKVVKQGDGSSIMNFIEARQSSYINRINS 241
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459220|ref|XP_004147344.1| PREDICTED: ABC transporter I family member 10, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/252 (75%), Positives = 216/252 (85%), Gaps = 1/252 (0%)
Query: 10 TPHLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWML 69
+P LLSP S PSRI+ E+ +AIE NLN+SIT KQ K VPILRDCS +PSG+ WML
Sbjct: 14 SPPLLSPLFSNPPSRINTTEN-IAIEGRNLNFSITTKQGKSVPILRDCSLRIPSGEFWML 72
Query: 70 LGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129
LGPNGCGKSTLLKVLAGLL T+G VYVK+PK FVFQNPD+QVVMPTVEADVAFGLG LN
Sbjct: 73 LGPNGCGKSTLLKVLAGLLNTTSGAVYVKKPKCFVFQNPDYQVVMPTVEADVAFGLGKLN 132
Query: 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189
L +DEV+S+V +AL AVGMS+YLQR VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL
Sbjct: 133 LNNDEVKSRVLEALSAVGMSSYLQRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 192
Query: 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249
DE+DQ GVI+AV+N L +S +VTALWVTHRLEELEYADGA YMEDGK+VM D SI +F
Sbjct: 193 DENDQTGVIKAVRNSLHNSEDVTALWVTHRLEELEYADGAIYMEDGKVVMHGDVASIQSF 252
Query: 250 IKSRQSSYIERI 261
I+++QS YI+RI
Sbjct: 253 IQTKQSDYIKRI 264
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517469|ref|XP_004165768.1| PREDICTED: ABC transporter I family member 10, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/252 (75%), Positives = 216/252 (85%), Gaps = 1/252 (0%)
Query: 10 TPHLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWML 69
+P LLSP S PSRI+ E+ +AIE +LN+SIT KQ K VPILRDCS +PSG+ WML
Sbjct: 14 SPPLLSPLFSNPPSRINTTEN-IAIEGRDLNFSITTKQGKSVPILRDCSLRIPSGEFWML 72
Query: 70 LGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129
LGPNGCGKSTLLKVLAGLL T+G VYVK+PK FVFQNPD+QVVMPTVEADVAFGLG LN
Sbjct: 73 LGPNGCGKSTLLKVLAGLLNTTSGAVYVKKPKCFVFQNPDYQVVMPTVEADVAFGLGKLN 132
Query: 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189
L +DEV+S+V +AL AVGMS+YLQR VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL
Sbjct: 133 LNNDEVKSRVLEALSAVGMSSYLQRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 192
Query: 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249
DE+DQ GVI+AV+N L +S +VTALWVTHRLEELEYADGA YMEDGK+VM D SI +F
Sbjct: 193 DENDQMGVIKAVRNSLHNSEDVTALWVTHRLEELEYADGAIYMEDGKVVMHGDVASIQSF 252
Query: 250 IKSRQSSYIERI 261
I+++QS YI+RI
Sbjct: 253 IQTKQSDYIKRI 264
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464675|ref|XP_003602619.1| ABC transporter I family member [Medicago truncatula] gi|355491667|gb|AES72870.1| ABC transporter I family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/260 (71%), Positives = 218/260 (83%), Gaps = 3/260 (1%)
Query: 6 SFTVTPH-LLSPPHSIHPSRIDGIES--GVAIECSNLNYSITKKQRKLVPILRDCSFSVP 62
S + TPH L++P +S P++ +S G+AIE NLN+S T +Q K V +LRDCS +P
Sbjct: 5 SLSFTPHHLVAPIYSSLPTKTTRGKSVDGIAIEGRNLNFSFTARQTKDVHVLRDCSIRIP 64
Query: 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA 122
SGQ WMLLGPNGCGKSTLLK+LAGL PT+G VYVK PKSFVFQNPDHQVVMPTV++DVA
Sbjct: 65 SGQFWMLLGPNGCGKSTLLKILAGLFTPTSGTVYVKEPKSFVFQNPDHQVVMPTVDSDVA 124
Query: 123 FGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182
FGLG +NL DEVRS+V++AL AVG+S+Y++R VQTLSGGQKQRVAIAGALAEACKVLLL
Sbjct: 125 FGLGKINLADDEVRSRVSQALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLL 184
Query: 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242
DELTTFLDE+DQ GVI+AV+N L S EVTALWVTHRLEELEYADGA YMEDGK+VMQ D
Sbjct: 185 DELTTFLDETDQVGVIKAVRNCLDTSEEVTALWVTHRLEELEYADGAIYMEDGKVVMQGD 244
Query: 243 GVSILNFIKSRQSSYIERIN 262
SI +FI++RQS+YI +IN
Sbjct: 245 AASIRSFIEARQSAYINQIN 264
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431461|ref|XP_002280615.1| PREDICTED: ABC transporter I family member 10, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/251 (72%), Positives = 215/251 (85%), Gaps = 7/251 (2%)
Query: 18 HSIHPSRIDG--IESGV-----AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLL 70
HS +P+R I S + AIE +LNYS+T + +L PIL+DCS +PSGQLWMLL
Sbjct: 18 HSTNPTRSVSLSIRSCIVTQNDAIEGQSLNYSVTTRLGQLTPILKDCSIRIPSGQLWMLL 77
Query: 71 GPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130
GPNGCGKSTLLK+LAGLL PT+G +YVK+PKSFVFQNPDHQVVMPTVEADVAFGLG NL
Sbjct: 78 GPNGCGKSTLLKILAGLLNPTSGTLYVKKPKSFVFQNPDHQVVMPTVEADVAFGLGKFNL 137
Query: 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
T +EVRS+V+KALDAVG+S+Y+QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD
Sbjct: 138 TIEEVRSRVSKALDAVGISDYMQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 197
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFI 250
E+DQ GVI+AVKN + SGEVTALWVTHR+EELEYADGA YMEDG++VM + SI++F+
Sbjct: 198 ENDQVGVIKAVKNSVDSSGEVTALWVTHRMEELEYADGAVYMEDGRVVMHGNAASIMDFV 257
Query: 251 KSRQSSYIERI 261
K+RQSSY+ ++
Sbjct: 258 KARQSSYLNQL 268
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|261865339|gb|ACY01920.1| hypothetical protein [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/231 (77%), Positives = 201/231 (87%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
AI NLN+SI KQ +PIL++CS +PSGQLWMLLGPNGCGKSTLLK+LAGLLKPT+
Sbjct: 128 AIWGQNLNFSIKTKQGGSLPILKNCSIQIPSGQLWMLLGPNGCGKSTLLKILAGLLKPTD 187
Query: 93 GHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL 152
G VYVK+PKSFVFQNPDHQVVMPTVEADVAFGLG +LT++EV+SKVAKALDAVGMS Y
Sbjct: 188 GSVYVKKPKSFVFQNPDHQVVMPTVEADVAFGLGKFDLTYEEVKSKVAKALDAVGMSEYS 247
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212
+R VQTLSGGQKQRVAIAGALAE C+VLLLDELTTFLDESDQ GVI+AVKN L SGEVT
Sbjct: 248 KRQVQTLSGGQKQRVAIAGALAETCQVLLLDELTTFLDESDQVGVIKAVKNSLTSSGEVT 307
Query: 213 ALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERINS 263
ALWVTHRLEELEYADGA YMEDG++V D +IL+FI +Q+ YIE+INS
Sbjct: 308 ALWVTHRLEELEYADGAIYMEDGRVVKNGDPSAILDFINRQQALYIEKINS 358
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516362|ref|XP_003526864.1| PREDICTED: ABC transporter I family member 10, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/231 (74%), Positives = 200/231 (86%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
AIE NL +S T +Q + VP+L+DCS +P GQ WMLLGPNGCGKSTLLK+LAGLL PT+
Sbjct: 36 AIEGRNLKFSFTTRQTQDVPVLKDCSIRIPCGQFWMLLGPNGCGKSTLLKILAGLLTPTS 95
Query: 93 GHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL 152
G VYV PKSFVFQNPDHQVVMPTV++DVAFGLG +NL HDEVRS+V++AL AVG+S+Y+
Sbjct: 96 GTVYVNGPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLAHDEVRSRVSRALHAVGLSDYM 155
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212
+R VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE+DQ GVI+AV+N + S EVT
Sbjct: 156 KRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDEADQVGVIKAVRNSVDTSAEVT 215
Query: 213 ALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERINS 263
ALWVTHRLEELEYADGA YMEDGK+VM D SI +FI++RQS+YI +INS
Sbjct: 216 ALWVTHRLEELEYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYITQINS 266
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088545|emb|CBI37536.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/231 (74%), Positives = 198/231 (85%), Gaps = 7/231 (3%)
Query: 18 HSIHPSRIDG--IESGV-----AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLL 70
HS +P+R I S + AIE +LNYS+T + +L PIL+DCS +PSGQLWMLL
Sbjct: 18 HSTNPTRSVSLSIRSCIVTQNDAIEGQSLNYSVTTRLGQLTPILKDCSIRIPSGQLWMLL 77
Query: 71 GPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130
GPNGCGKSTLLK+LAGLL PT+G +YVK+PKSFVFQNPDHQVVMPTVEADVAFGLG NL
Sbjct: 78 GPNGCGKSTLLKILAGLLNPTSGTLYVKKPKSFVFQNPDHQVVMPTVEADVAFGLGKFNL 137
Query: 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
T +EVRS+V+KALDAVG+S+Y+QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD
Sbjct: 138 TIEEVRSRVSKALDAVGISDYMQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 197
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241
E+DQ GVI+AVKN + SGEVTALWVTHR+EELEYADGA YMEDG++VM
Sbjct: 198 ENDQVGVIKAVKNSVDSSGEVTALWVTHRMEELEYADGAVYMEDGRVVMHG 248
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798592|ref|XP_002867180.1| ATNAP13 [Arabidopsis lyrata subsp. lyrata] gi|297313016|gb|EFH43439.1| ATNAP13 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 165/234 (70%), Positives = 205/234 (87%), Gaps = 2/234 (0%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
VA+EC NL +S++ +Q VPILRDCSF +PSGQLWM+LGPNGCGKSTLLK+LAG++ P+
Sbjct: 39 VAVECRNLCFSVSTRQGISVPILRDCSFRIPSGQLWMILGPNGCGKSTLLKILAGVVNPS 98
Query: 92 NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSN 150
+G V+V++PK+FVFQNPDHQVVMPTVEADVAFGLG ++ +EV+S+V KAL+AVGM +
Sbjct: 99 SGTVFVEKPKNFVFQNPDHQVVMPTVEADVAFGLGKYHDMNQEEVKSRVIKALEAVGMRD 158
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL-GDSG 209
Y+QRP+QTLSGGQKQR+AIAGALAEACKVLLLDELTTFLDESDQ GVI+AVK+L+ G
Sbjct: 159 YMQRPIQTLSGGQKQRIAIAGALAEACKVLLLDELTTFLDESDQMGVIKAVKDLINAKKG 218
Query: 210 EVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERINS 263
+VTALWVTHRLEEL+YADGA YME+G++V D +I +FIK++QSSYI++I S
Sbjct: 219 DVTALWVTHRLEELKYADGAVYMENGRVVRHGDAAAISDFIKAKQSSYIDQIGS 272
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329121|ref|NP_195072.2| ABC transporter I family member 10 [Arabidopsis thaliana] gi|75329129|sp|Q8H1R4.1|AB10I_ARATH RecName: Full=ABC transporter I family member 10, chloroplastic; Short=ABC transporter ABCI.10; Short=AtABCI10; AltName: Full=Non-intrinsic ABC protein 13; AltName: Full=Protein EMBRYO DEFECTIVE 2751; Flags: Precursor gi|23296450|gb|AAN13061.1| unknown protein [Arabidopsis thaliana] gi|37202112|gb|AAQ89671.1| At4g33460 [Arabidopsis thaliana] gi|62318881|dbj|BAD93954.1| hypothetical protein [Arabidopsis thaliana] gi|332660827|gb|AEE86227.1| ABC transporter I family member 10 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/234 (70%), Positives = 205/234 (87%), Gaps = 2/234 (0%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
VA+EC NL +S++ +Q VPILRDCSF +PSGQLWM+LGPNGCGKSTLLK+LAG++ P+
Sbjct: 38 VAVECRNLCFSVSTRQGISVPILRDCSFRIPSGQLWMILGPNGCGKSTLLKILAGVVNPS 97
Query: 92 NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSN 150
+G V+V++PK+FVFQNPDHQVVMPTVEADVAFGLG ++ +EV+S+V KAL+AVGM +
Sbjct: 98 SGTVFVEKPKNFVFQNPDHQVVMPTVEADVAFGLGKYHDMNQEEVKSRVIKALEAVGMRD 157
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL-GDSG 209
Y+QRP+QTLSGGQKQR+AIAGALAEACKVLLLDELTTFLDESDQ GVI+AVK+L+ G
Sbjct: 158 YMQRPIQTLSGGQKQRIAIAGALAEACKVLLLDELTTFLDESDQMGVIKAVKDLINAKKG 217
Query: 210 EVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERINS 263
+VTALWVTHRLEEL+YADGA YME+G++V D +I +FIK++QSSYI++I S
Sbjct: 218 DVTALWVTHRLEELKYADGAVYMENGRVVRHGDAATISDFIKAKQSSYIDQIGS 271
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 263 | ||||||
| TAIR|locus:2119186 | 271 | ABCI10 "ATP-binding cassette I | 0.882 | 0.856 | 0.653 | 1.4e-80 | |
| TIGR_CMR|CHY_2279 | 277 | CHY_2279 "cobalt ABC transport | 0.813 | 0.772 | 0.350 | 3.5e-27 | |
| UNIPROTKB|Q71WH7 | 279 | ecfA2 "Energy-coupling factor | 0.768 | 0.724 | 0.372 | 5.7e-27 | |
| TIGR_CMR|BA_0139 | 280 | BA_0139 "ABC transporter, ATP- | 0.699 | 0.657 | 0.361 | 4.6e-25 | |
| UNIPROTKB|Q81VQ1 | 293 | ecfA2 "Energy-coupling factor | 0.574 | 0.515 | 0.305 | 9.8e-24 | |
| TIGR_CMR|BA_0140 | 293 | BA_0140 "ABC transporter, ATP- | 0.574 | 0.515 | 0.305 | 9.8e-24 | |
| UNIPROTKB|A2RI01 | 277 | ecfA1 "Energy-coupling factor | 0.779 | 0.740 | 0.325 | 7.8e-23 | |
| UNIPROTKB|O68106 | 280 | cbiO "Cobalt import ATP-bindin | 0.741 | 0.696 | 0.344 | 6.3e-21 | |
| TIGR_CMR|CHY_1630 | 270 | CHY_1630 "cobalt ABC transport | 0.794 | 0.774 | 0.343 | 1.7e-20 | |
| TIGR_CMR|GSU_3001 | 279 | GSU_3001 "cobalt ABC transport | 0.699 | 0.659 | 0.326 | 7.2e-20 |
| TAIR|locus:2119186 ABCI10 "ATP-binding cassette I10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 153/234 (65%), Positives = 193/234 (82%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
VA+EC NL +S++ +Q VPILRDCSF +PSGQLWM+LGPNGCGKSTLLK+LAG++ P+
Sbjct: 38 VAVECRNLCFSVSTRQGISVPILRDCSFRIPSGQLWMILGPNGCGKSTLLKILAGVVNPS 97
Query: 92 NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMSN 150
+G V+V++PK+FVFQNPDHQVVMPTVEADVAFGLG + + +EV+S+V KAL+AVGM +
Sbjct: 98 SGTVFVEKPKNFVFQNPDHQVVMPTVEADVAFGLGKYHDMNQEEVKSRVIKALEAVGMRD 157
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLG-DSG 209
Y+QRP+QTLSGGQKQR+AIAGALAEACKV SDQ GVI+AVK+L+ G
Sbjct: 158 YMQRPIQTLSGGQKQRIAIAGALAEACKVLLLDELTTFLDESDQMGVIKAVKDLINAKKG 217
Query: 210 EVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERINS 263
+VTALWVTHRLEEL+YADGA YME+G++V D +I +FIK++QSSYI++I S
Sbjct: 218 DVTALWVTHRLEELKYADGAVYMENGRVVRHGDAATISDFIKAKQSSYIDQIGS 271
|
|
| TIGR_CMR|CHY_2279 CHY_2279 "cobalt ABC transporter, ATP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 82/234 (35%), Positives = 124/234 (52%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I ++L+Y ++ + L++ S S G+L L+GPNG GK+T +K+LAGLL+P G
Sbjct: 5 IVTNSLSYHYAAEKERYA--LQNVSLSFLQGELVALVGPNGSGKTTFIKLLAGLLEPNEG 62
Query: 94 HVYV--KRPKSF------------VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139
+V V + PK VFQNPD+Q+V VE DVAFG NLNL E++ +V
Sbjct: 63 YVEVLGRNPKKLKEEGLLGTQIGLVFQNPDNQIVAAVVEEDVAFGPENLNLPTGEIKKRV 122
Query: 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIE 199
+AL G+ QR LSGGQKQR+AIAGALA ++ + + V+
Sbjct: 123 EEALKLTGLWELRQRASYALSGGQKQRLAIAGALALRPRILLLDEPTSMLDPAGRQEVLN 182
Query: 200 AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSR 253
+ L + ++T +++TH +EE A + G++ DG NF + +
Sbjct: 183 LLLKL-NEEEKLTIIFITHYMEEALRAKRLIAFDRGRVAF--DGTPN-NFFRQK 232
|
|
| UNIPROTKB|Q71WH7 ecfA2 "Energy-coupling factor transporter ATP-binding protein EcfA 2" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 83/223 (37%), Positives = 119/223 (53%)
Query: 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88
ES V +E Y T+K ++D S S G+ L+G NG GKST+ K+L GLL
Sbjct: 3 ESFVRLEHVFYKYEDTEKYA-----VKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGLL 57
Query: 89 KPTNG-----HVY--------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135
P +G H ++R VFQNPD+Q V TV+ DVAFGL N + HD +
Sbjct: 58 FPEDGLIKIGHFVLSEKNIWDIRRQVGMVFQNPDNQFVGATVQDDVAFGLENHGVPHDTM 117
Query: 136 RSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQ 194
+V AL+ VGM +Y L P + LSGGQKQRVAIAG LA V +
Sbjct: 118 VERVESALNEVGMQSYALHEPAR-LSGGQKQRVAIAGVLALQPDVIILDEATSMLDPRGR 176
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
V+E ++ ++ + ++T + +TH L+E+ +AD M +G++
Sbjct: 177 AEVMETIR-IMREQEDITVISITHDLDEVLFADRVIVMNNGEV 218
|
|
| TIGR_CMR|BA_0139 BA_0139 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 72/199 (36%), Positives = 106/199 (53%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--------------KR 99
L+D SFS+ G+ ++G NG GKSTL K+L GL P G + V ++
Sbjct: 23 LKDVSFSLFEGEWVSVIGQNGSGKSTLAKLLNGLFLPEAGTITVNDTMILSEETVWDVRK 82
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTL 159
VFQNPD+Q V TV+ DV FGL N+ + +++ ++ +AL V M ++L +L
Sbjct: 83 QIGMVFQNPDNQFVGTTVQDDVVFGLENIGMPREQMVERLNQALRLVRMEDFLNDEPHSL 142
Query: 160 SGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHR 219
SGGQKQRVAIAG LA + + V+E V+ L+ + G +T L +TH
Sbjct: 143 SGGQKQRVAIAGVLALQPSILILDEATSMLDPQGRREVVETVRQLVNEKG-ITVLSITHD 201
Query: 220 LEELEYADGAFYMEDGKIV 238
LEE +D + G+I+
Sbjct: 202 LEEAAQSDRVIILNKGEIL 220
|
|
| UNIPROTKB|Q81VQ1 ecfA2 "Energy-coupling factor transporter ATP-binding protein EcfA 2" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 47/154 (30%), Positives = 76/154 (49%)
Query: 97 VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRP 155
+++ VFQ P+HQ+ TVE D+ FG N ++ + + K +A++ VG+ L R
Sbjct: 83 LRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEAAKQKAREAIELVGLEPELLARS 142
Query: 156 VQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALW 215
LSGGQ +RVAIAG LA +V Q ++E L + G +T +
Sbjct: 143 PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGQNELMEMFYKLHKEKG-LTVIL 201
Query: 216 VTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248
VTH +E+ +YA+ M G + +Q + +
Sbjct: 202 VTHNMEDAAKYAEQIVVMHKGTVFLQGSAEEVFS 235
|
|
| TIGR_CMR|BA_0140 BA_0140 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 47/154 (30%), Positives = 76/154 (49%)
Query: 97 VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRP 155
+++ VFQ P+HQ+ TVE D+ FG N ++ + + K +A++ VG+ L R
Sbjct: 83 LRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEAAKQKAREAIELVGLEPELLARS 142
Query: 156 VQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALW 215
LSGGQ +RVAIAG LA +V Q ++E L + G +T +
Sbjct: 143 PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGQNELMEMFYKLHKEKG-LTVIL 201
Query: 216 VTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248
VTH +E+ +YA+ M G + +Q + +
Sbjct: 202 VTHNMEDAAKYAEQIVVMHKGTVFLQGSAEEVFS 235
|
|
| UNIPROTKB|A2RI01 ecfA1 "Energy-coupling factor transporter ATP-binding protein EcfA 1" [Lactococcus lactis subsp. cremoris MG1363 (taxid:416870)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 72/221 (32%), Positives = 111/221 (50%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E NL + K+ V L SFS+ G+ ++G NG GKST +++ GL + G
Sbjct: 5 LEVENLVFKYEKESD--VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
V + +R VFQNPD+Q V TVE DVAFG+ N + +E+ +V
Sbjct: 63 IVKIDGERLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVD 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEA 200
+AL AV M ++ R LSGGQKQRVA+AG +A ++ + + ++
Sbjct: 123 EALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRSEIMRV 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241
+ + D +T L +TH L+E +D M G+I+ +A
Sbjct: 183 IHEIK-DKYHLTVLSITHDLDEAASSDRILVMRAGEIIKEA 222
|
|
| UNIPROTKB|O68106 cbiO "Cobalt import ATP-binding protein CbiO" [Rhodobacter capsulatus SB 1003 (taxid:272942)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 74/215 (34%), Positives = 108/215 (50%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------- 97
V L D S +VP G+ +LGPNG GKSTLL L G L+P +G V +
Sbjct: 18 VKALDDLSLAVPQGESLAILGPNGAGKSTLLLHLNGTLRPQSGRVLLGGTATGHSRKDLT 77
Query: 98 --KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP 155
+R V Q+ D Q+ TV DV+FG NL L+ E R++V +AL A+ +S+ RP
Sbjct: 78 DWRRRVGLVLQDADDQLFAATVFEDVSFGPLNLGLSEAEARARVEEALAALSISDLRDRP 137
Query: 156 VQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLG-DSGEVTAL 214
LSGGQK+RVAIAGA+A +V D G + + L G + +T +
Sbjct: 138 THMLSGGQKRRVAIAGAVAMRPEVLLLDEPTAGL---DLAGTEQLLTLLHGLRAAGMTLV 194
Query: 215 WVTHRLE-ELEYADGAFYMEDGKIVMQADGVSILN 248
+ TH +E AD G+++ + ++L+
Sbjct: 195 FSTHDVELAAALADRVALFRTGRVLAEGAAAAVLS 229
|
|
| TIGR_CMR|CHY_1630 CHY_1630 "cobalt ABC transporter, ATP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 79/230 (34%), Positives = 111/230 (48%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
+A+E NL + + L + SF +P ++LG NG GKSTLL L GL +
Sbjct: 3 LAVEIENLTFFYPDGNKALDGV----SFVIPERSKTVILGHNGAGKSTLLLHLNGLYTAS 58
Query: 92 NGHVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138
G V + ++ VFQ+PD Q+ T+ DVAFG NL L E+ +
Sbjct: 59 RGRVKIFGKVINEENIREIRKKVGLVFQDPDDQLFASTIFDDVAFGPQNLELDKKEILRR 118
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVI 198
V +AL AV M + +RP LS GQK+R AIAG LA + Q I
Sbjct: 119 VEEALKAVDMWDLRERPPHHLSLGQKKRAAIAGVLAMEPDIVVLDEPMAYLDPRGQ-EEI 177
Query: 199 EAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADGVSIL 247
A+ N L + G+ T + TH L+ LE+AD + G++V + D SIL
Sbjct: 178 TAILNRLNNEGK-TVIVSTHDLDWALEWADYVVVLNAGRVVAEGDK-SIL 225
|
|
| TIGR_CMR|GSU_3001 GSU_3001 "cobalt ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 65/199 (32%), Positives = 101/199 (50%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------RPKSF--- 103
L D F V G+ +LG NG GK+TLLK++ GL++ +G V + +PK
Sbjct: 19 LSDIRFQVARGEFCGILGSNGSGKTTLLKIMDGLIREYDGSVLLDGRDVRSLQPKDIYRT 78
Query: 104 ---VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160
VFQNPD Q+ TV DVAFG N+ EV+++V +AL+AV ++ + + LS
Sbjct: 79 VGLVFQNPDDQLFAHTVFEDVAFGPRNMGFAEAEVKARVERALEAVDLAGAAAKQIHHLS 138
Query: 161 GGQKQRVAIAGALAEACKVXXXXXXXXXXXXSDQFGVIEAVKNLLGDSGEVTALWVTHRL 220
GQK+R IAG LA +V ++ ++E + L G VT + TH +
Sbjct: 139 YGQKKRACIAGLLAMGHEVLLMDEPTAGLDPMGEYRMMELLTRLNRQEG-VTIVMATHSV 197
Query: 221 EELE-YADGAFYMEDGKIV 238
+ + + + + G+IV
Sbjct: 198 DLVPLFLHRLYILSRGRIV 216
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8H1R4 | AB10I_ARATH | No assigned EC number | 0.7051 | 0.8821 | 0.8560 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 263 | |||
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-80 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-69 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-53 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-53 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-52 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-50 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-50 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-49 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-47 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-46 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-46 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-46 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-45 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-45 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-44 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-43 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-42 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-41 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-41 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-41 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-40 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-40 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-40 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-40 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-39 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-39 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-38 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-38 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-38 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-38 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-37 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-37 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-37 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-37 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-36 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-36 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-35 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-34 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-33 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-33 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-33 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-33 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-33 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-32 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-32 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-32 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-32 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-32 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-31 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-31 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-31 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-31 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-31 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-31 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-31 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-31 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-31 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-31 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-30 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-30 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-29 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-29 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-29 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-29 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-29 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-29 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-29 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-29 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-28 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-28 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-28 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-28 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-28 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-28 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-27 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-27 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-27 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-27 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-27 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-27 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-27 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-27 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-27 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-27 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-27 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-27 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-27 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-27 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-26 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-26 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-26 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-26 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-26 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-26 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-26 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-26 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-26 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-26 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-26 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-26 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-25 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-25 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-25 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-25 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-24 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-24 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-24 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-24 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-24 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-24 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-24 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-24 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 7e-24 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-24 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-24 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-23 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-23 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-23 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-23 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-23 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-23 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-23 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-23 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-23 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-23 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 8e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-23 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-23 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-22 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-22 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-22 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-22 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-22 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-22 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-22 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-22 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-21 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-21 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-21 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-21 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 8e-21 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-20 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-20 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-20 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-20 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-20 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-20 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-20 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-20 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 7e-20 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-20 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-20 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-19 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-19 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-19 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-19 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-19 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-19 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-18 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-18 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-18 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-18 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-18 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-18 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 8e-18 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-17 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-17 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-17 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-17 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-17 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-17 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-17 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-17 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-17 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-17 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-17 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-17 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-16 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-16 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-16 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-16 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-15 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-15 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-15 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-15 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-15 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-15 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-15 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-15 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-15 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-15 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-15 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 6e-15 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 9e-15 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-14 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-14 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-14 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-14 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-14 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-14 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-14 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-14 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-14 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-14 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 7e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-13 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-13 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-13 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-13 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-13 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-13 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-13 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-13 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-13 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 7e-13 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 9e-13 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 9e-13 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-12 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-12 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-12 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-12 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-12 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-12 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-11 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-11 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-11 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-11 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-11 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-11 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-10 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-10 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-10 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-10 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-09 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-09 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-09 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-09 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-09 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-09 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-08 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-08 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 6e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 9e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-06 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 3e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 9e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 9e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-04 | |
| cd03272 | 243 | cd03272, ABC_SMC3_euk, ATP-binding cassette domain | 6e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.001 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.001 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 0.001 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.004 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.004 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 1e-80
Identities = 97/216 (44%), Positives = 124/216 (57%), Gaps = 19/216 (8%)
Query: 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH 94
E NL++S R P L D S ++ G+ +++GPNG GKSTLL++L GLL PT+G
Sbjct: 1 ELKNLSFSYPDGAR---PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE 57
Query: 95 VYVK-------------RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141
V V R VFQNPD Q PTVE +VAFGL NL L +E+ +V +
Sbjct: 58 VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEE 117
Query: 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201
AL+ VG+ R TLSGGQKQRVAIAG LA +LLLDE T LD + + ++E +
Sbjct: 118 ALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 202 KNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGK 236
K L G T + VTH L+ L E AD +EDGK
Sbjct: 178 KK-LKAEG-KTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 1e-69
Identities = 99/213 (46%), Positives = 128/213 (60%), Gaps = 16/213 (7%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK------------ 98
L+D S + G+ +L+GPNG GKSTLLK+L GLLKPT+G V V
Sbjct: 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76
Query: 99 --RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
+ VFQNPD Q+ PTVE +VAFGL NL L +E+ +VA+AL+ VG+ L RP
Sbjct: 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP 136
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
LSGGQKQRVAIAG LA ++LLLDE T LD + ++E +K L + G+ T + V
Sbjct: 137 FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGK-TIIIV 195
Query: 217 THRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248
TH LE + EYAD ++DGKI+ D I N
Sbjct: 196 THDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-53
Identities = 88/222 (39%), Positives = 123/222 (55%), Gaps = 16/222 (7%)
Query: 34 IECSNLNYSITK-KQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
I+C N++Y ++ L D + V G+ ++LG NG GKST+ K + LL P+
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 93 GHVYVK-------------RPKS-FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138
G VYV R K+ VFQNPD+Q+V VE DVAFG NL + +E+R +
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
V ++L VGM Y + LSGGQKQRVAIAG LA + ++ DE T LD S + V+
Sbjct: 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV 184
Query: 199 EAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
+K L G +T + +TH +EE AD M+ GK+VM+
Sbjct: 185 NTIKELNKKYG-ITIILITHYMEEAVEADRIIVMDSGKVVME 225
|
Length = 280 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-53
Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 17/230 (7%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
V I+ N+++S + L++ SF + G+ +LG NG GKST+ K+L GLLKP
Sbjct: 6 VMIKVENVSFSYPNSEN---NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 92 NGHVYVK------------RPK-SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138
+G + + R K +FQNPD+Q + TVE D+AFGL N + +++
Sbjct: 63 SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI 122
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
+ VGM +YL + Q LSGGQKQRVAIA LA ++++ DE T+ LD + +
Sbjct: 123 IDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 199 EAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+ + + L + + T + +TH ++E AD +GK++ Q ILN
Sbjct: 183 KIMVD-LRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
|
Length = 271 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-52
Identities = 92/234 (39%), Positives = 126/234 (53%), Gaps = 25/234 (10%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+E NL++ K PIL D SFS+P G++ +LGPNG GKSTLLK LAGLLKP +
Sbjct: 2 MLEVENLSFGYGGK-----PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS 56
Query: 93 GHVYV-------KRPK------SFVFQNPDHQVVMPTVEADVAFG----LGNLNLTHDEV 135
G V + PK ++V Q+P + TV V G LG E
Sbjct: 57 GEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL-TVYELVLLGRYPHLGLFGRPSKED 115
Query: 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195
V +AL+ +G+ + RPV LSGG++QRV IA ALA+ +LLLDE T+ LD + Q
Sbjct: 116 EEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175
Query: 196 GVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
V+E +++L + G +T + V H L YAD ++DGKIV Q +L
Sbjct: 176 EVLELLRDLNREKG-LTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 1e-50
Identities = 85/217 (39%), Positives = 129/217 (59%), Gaps = 16/217 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE NL + + Q K L D SF V G+ ++G NG GKST ++++ GLL+ +G
Sbjct: 5 IEVKNLTFKYKEDQEK--YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62
Query: 94 HVYV------------KRPK-SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ + R K VFQNPD+Q V TVE DVAFGL N + H+E++ +V
Sbjct: 63 QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVN 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
+AL+ VGM ++ +R LSGGQKQRVAIAGA+A K+++LDE T+ LD + +I+
Sbjct: 123 EALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+K + D +T + +TH L+E+ +D M++G++
Sbjct: 183 IKGIRDDYQ-MTVISITHDLDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 2e-50
Identities = 78/202 (38%), Positives = 114/202 (56%), Gaps = 18/202 (8%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KR 99
V L D S +V G+ LLGP+GCGK+TLL+++AGL +P +G + + +R
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 100 PKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
VFQ+ + P TV ++AFGL + E+R++V + L+ VG+ L R
Sbjct: 73 NIGMVFQDY---ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
LSGGQ+QRVA+A ALA +LLLDE + LD + + E +K L + G +T ++VT
Sbjct: 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG-ITTIYVT 188
Query: 218 HRLEE-LEYADGAFYMEDGKIV 238
H EE L AD M +G+IV
Sbjct: 189 HDQEEALALADRIAVMNEGRIV 210
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 6e-49
Identities = 87/218 (39%), Positives = 121/218 (55%), Gaps = 17/218 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I ++++ L+D SFSV G+ ++G NG GKSTL K+L GLL P G
Sbjct: 6 IRVEHISFRYPDAAT---YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ V +R VFQNPD+Q V TV+ DVAFGL N+ + +E+ +V
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
+AL VGM ++L R LSGGQKQRVAIAG LA +++LDE T+ LD + V+E
Sbjct: 123 QALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
V+ L + +T L +TH L+E AD M G+I+
Sbjct: 183 VR-QLKEQKGITVLSITHDLDEAAQADRVIVMNKGEIL 219
|
Length = 279 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 1e-47
Identities = 78/212 (36%), Positives = 118/212 (55%), Gaps = 20/212 (9%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---- 97
+++K + D S + G+ LLGP+GCGK+TLL+++AG +P++G + +
Sbjct: 10 NVSKSFGD-FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGED 68
Query: 98 -------KRPKSFVFQNPDHQVVMP--TVEADVAFGLGNLN-LTHDEVRSKVAKALDAVG 147
KRP VFQ+ + P TVE +VAFGL L E++++V +AL+ VG
Sbjct: 69 ITDVPPEKRPIGMVFQSY---ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVG 125
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ + R LSGGQ+QRVA+A AL KVLLLDE + LD + + + +K L +
Sbjct: 126 LEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE 185
Query: 208 SGEVTALWVTHRLEE-LEYADGAFYMEDGKIV 238
G +T ++VTH EE L +D M DG+I
Sbjct: 186 LG-ITFVYVTHDQEEALAMSDRIAVMNDGRIE 216
|
Length = 352 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-46
Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY---------------V 97
+L+ +F+ G++ LLG NG GKSTLL L GLL+P +G V
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 98 KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
++ VFQ+PD Q+ V+ DVAFG NL L+ EV +V +AL AVG S +RP
Sbjct: 67 RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH 126
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
LSGG+K+RVAIAGA+A VLLLDE T LD + + ++ ++ L
Sbjct: 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-46
Identities = 92/225 (40%), Positives = 124/225 (55%), Gaps = 26/225 (11%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E +L YS L+ +F G++ LLGPNG GKSTL G+LKPT+G
Sbjct: 2 LETRDLKYSYPDGTE----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG 57
Query: 94 HVYVK--------------RPK-SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138
V +K R VFQNPD Q+ PTVE DVAFG NL L+ +EV +
Sbjct: 58 EVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR 117
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
V +AL AVGM + +P LSGGQK+RVAIAG LA ++++LDE T+ LD G
Sbjct: 118 VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPM---GAS 174
Query: 199 EAVKNL--LGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ 240
+ +K L L G +T + TH ++ + YAD + M DGKI+ +
Sbjct: 175 QIMKLLYDLNKEG-ITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218
|
Length = 275 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 3e-46
Identities = 84/214 (39%), Positives = 117/214 (54%), Gaps = 17/214 (7%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP---------------TNGHV 95
P L D SFS+P G L+G NG GKST+ K++ GLL P T V
Sbjct: 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79
Query: 96 YVKRPK-SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
+ R K VFQNPD+Q V TV DVAFGL N + E+ V L VGM +Y+
Sbjct: 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDS 139
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQKQRVAIAG LA K+++LDE T+ LD + + +++ ++ L + +T +
Sbjct: 140 EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN-NLTVI 198
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
+TH ++E AD ++DGK++ Q V I +
Sbjct: 199 SITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232
|
Length = 282 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-45
Identities = 73/210 (34%), Positives = 111/210 (52%), Gaps = 35/210 (16%)
Query: 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH 94
E NL+ + +L D S S+ +G++ +LGPNG GKSTLLK LAGLLKP++G
Sbjct: 1 EVENLSVGYGGR-----TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE 55
Query: 95 VYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA---KALDAVGMSNY 151
+ + G +L+ E+ K+A +AL+ +G+++
Sbjct: 56 ILL-------------------------DGKDLASLSPKELARKIAYVPQALELLGLAHL 90
Query: 152 LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211
RP LSGG++QRV +A ALA+ +LLLDE T+ LD + Q ++E ++ L + G
Sbjct: 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG-K 149
Query: 212 TALWVTHRLE-ELEYADGAFYMEDGKIVMQ 240
T + V H L YAD ++DG+IV Q
Sbjct: 150 TVVMVLHDLNLAARYADRVILLKDGRIVAQ 179
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-45
Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 14/215 (6%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-------------VKRP 100
L+D SF++P GQ ++G NG GKST+ K++ G+ K +G ++ +++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160
VFQNPD+Q V V+ DVAFGL N + +DE+ +V++AL V M LS
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALS 144
Query: 161 GGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220
GGQKQRVAIAG LA V++LDE T+ LD + +++ V+ + + +T + +TH L
Sbjct: 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH-NITIISITHDL 203
Query: 221 EELEYADGAFYMEDGKIVMQADGVSILNFIKSRQS 255
E AD M G + + I + +
Sbjct: 204 SEAMEADHVIVMNKGTVYKEGTPTEIFDHAEELTR 238
|
Length = 269 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-44
Identities = 84/221 (38%), Positives = 116/221 (52%), Gaps = 23/221 (10%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
IE NL TKK L SF V G+++ LLGPNG GK+TLLK+LAGLLKPT+
Sbjct: 4 VIEVRNL----TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS 59
Query: 93 GHVYV------KRPKS------FVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSK 138
G + V K P +V Q P P TV ++ F L+ +E +
Sbjct: 60 GEILVLGYDVVKEPAKVRRRIGYVPQEPSL---YPELTVRENLEFFARLYGLSKEEAEER 116
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
+ + L+ G+ + + V+TLSGG KQR++IA AL ++L+LDE T+ LD + +
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 199 EAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV 238
E ++ L G VT L TH LEE E D + DGKI+
Sbjct: 177 ELLRELA-KEGGVTILLSTHILEEAEELCDRVIILNDGKII 216
|
Length = 293 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 9e-43
Identities = 77/220 (35%), Positives = 107/220 (48%), Gaps = 22/220 (10%)
Query: 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH 94
E +L S P+L D SF V G+ ++GPNG GKSTLLK + GLLKPT+G
Sbjct: 1 EVEDLTVSYGGH-----PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS 55
Query: 95 VYVK-RPKS-------FVFQNPDHQVVMP-TVEADVAFGL----GNLNLTHDEVRSKVAK 141
+ V +P +V Q P +V V GL G ++KV +
Sbjct: 56 IRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115
Query: 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201
AL+ VG+S R + LSGGQ+QRV +A AL + +LLLDE +D Q + E +
Sbjct: 116 ALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELL 175
Query: 202 KNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQ 240
+ L + +T L VTH L LEY D + + +V
Sbjct: 176 RELRRE--GMTILVVTHDLGLVLEYFDRVLLL-NRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 7e-42
Identities = 77/202 (38%), Positives = 111/202 (54%), Gaps = 22/202 (10%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRPK---S 102
V L D S SV G+ L+GP+GCGKSTLL+++AGL +PT+G V V P
Sbjct: 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRG 76
Query: 103 FVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR-PVQTL 159
+VFQ ++P TV +VA GL + E R + + L+ VG+S + P Q L
Sbjct: 77 YVFQQD---ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQ-L 132
Query: 160 SGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHR 219
SGG +QRVA+A ALA VLLLDE + LD + + E + ++ ++G T L VTH
Sbjct: 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHD 191
Query: 220 LEELEYADGAFYMEDGKIVMQA 241
++E A ++ D +V+ A
Sbjct: 192 IDE------AVFLADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-41
Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 20/221 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE NL+ + + V L+ S S+ G+ ++GP+G GKSTLL +L GL +PT+G
Sbjct: 1 IELKNLSKTY-GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59
Query: 94 HVYVK---------------RPK--SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR 136
V V R + FVFQ+ + + T +V L + E R
Sbjct: 60 EVRVDGTDISKLSEKELAAFRRRHIGFVFQSF-NLLPDLTALENVELPLLLAGVPKKERR 118
Query: 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196
+ + L+ VG+ + L LSGGQ+QRVAIA ALA K++L DE T LD
Sbjct: 119 ERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178
Query: 197 VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
V+E ++ L ++G T + VTH E EYAD + DGKI
Sbjct: 179 VMELLRELNKEAG-TTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 5e-41
Identities = 83/221 (37%), Positives = 119/221 (53%), Gaps = 19/221 (8%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE +L YS + L + +F P ++GPNG GKSTL + G+LKPT+G
Sbjct: 4 IETRDLCYSYSGS----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG 59
Query: 94 HVY-------------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
V V++ VFQNPD Q+ PTVE D+AFG NL L + V +V+
Sbjct: 60 SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVS 119
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
AL +G+ R LSGG+K+RVAIAG +A +VL+LDE T LD +I+
Sbjct: 120 SALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 201 VKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQ 240
+ +L G +T ++ TH+L+ + E AD + M+ G+IV
Sbjct: 180 LNDLPETYG-MTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219
|
Length = 277 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-41
Identities = 76/211 (36%), Positives = 103/211 (48%), Gaps = 23/211 (10%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
IE NL S + P+L D S SV G++ L+GPNG GKSTLLK + GLLKP++
Sbjct: 4 MIEVENLTVSYGNR-----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58
Query: 93 GHVYVKRPKSFVFQNPDHQVVMP-----------TVEADVAFGL----GNLNLTHDEVRS 137
G + + + +P TV+ V G G + + +
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197
KV +AL+ VGM + R + LSGGQKQRV +A ALA+ +LLLDE T +D + Q
Sbjct: 119 KVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQ-KE 177
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEEL-EYAD 227
I + L G T L VTH L + Y D
Sbjct: 178 IYDLLKELRQEG-KTVLMVTHDLGLVMAYFD 207
|
Length = 254 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 1e-40
Identities = 87/230 (37%), Positives = 123/230 (53%), Gaps = 21/230 (9%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
IE +L++ + L + S S+P G LLGPNG GKSTLL L G+ P
Sbjct: 4 IIEVEDLHFRYKDGTKAL----KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 93 GHVYVK------------RPK-SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139
G V V R K VFQ+PD QV TV DVAFG N+ L DEV +V
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199
+AL AV M ++ +P LS GQK+RVAIAG LA V++LDE +LD Q ++E
Sbjct: 120 EEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME 179
Query: 200 AVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADGVSILN 248
+ + L + G+ T + TH ++ E+AD +++G+++ + D S+L
Sbjct: 180 -ILDRLHNQGK-TVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLT 226
|
Length = 274 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-40
Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 20/201 (9%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRPK---S 102
V +L D + SV G+ +LGP+GCGKSTLL+++AGL KPT+G V V P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIG 75
Query: 103 FVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160
+VFQ ++P TV +VA GL + E R + + L+ VG++ + + LS
Sbjct: 76 YVFQED---ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLS 132
Query: 161 GGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220
GG +QRVAIA ALA K+LLLDE LD + + + + L ++ T L VTH +
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDV 191
Query: 221 EELEYADGAFYMEDGKIVMQA 241
+E A Y+ D +V+
Sbjct: 192 DE------AVYLADRVVVLSN 206
|
Length = 248 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 2e-40
Identities = 80/201 (39%), Positives = 109/201 (54%), Gaps = 18/201 (8%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRP 100
L S + G+ + LLGP+GCGK+TLL+++AG PT+G + + KRP
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP 73
Query: 101 KSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158
+ VFQN + P TV ++AFGL L E++ +VA+ALD V + Y R
Sbjct: 74 VNTVFQN---YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQ 130
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LSGGQ+QRVAIA AL KVLLLDE LD + + +K L + G +T ++VTH
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELG-ITFVFVTH 189
Query: 219 RLEE-LEYADGAFYMEDGKIV 238
EE L +D M GKI
Sbjct: 190 DQEEALTMSDRIAVMNKGKIQ 210
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 3e-40
Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 25/221 (11%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+E N+ +K +L+D + + G+ +LLGP+GCGKSTLL+++AGL +PT+
Sbjct: 3 ELELKNV-----RKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57
Query: 93 GHVYV-----------KRPKSFVFQNP---DHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138
G + + KR + VFQN H M TV ++AFGL + E+ +
Sbjct: 58 GEILIDGRDVTDLPPEKRGIAMVFQNYALYPH---M-TVYENIAFGLKLRGVPKAEIDKR 113
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
V + +G+ + L R LSGGQ+QRVA+A AL KV LLDE + LD + +
Sbjct: 114 VKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMR 173
Query: 199 EAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIV 238
+K L G T ++VTH E AD M DG+I
Sbjct: 174 SEIKKLHERLG-TTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213
|
Length = 338 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-39
Identities = 73/205 (35%), Positives = 116/205 (56%), Gaps = 19/205 (9%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPK----- 101
L + + + G+ L+G G GKSTL++ L GLLKPT+G + + K+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 102 ---SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS--NYLQRPV 156
VFQ P++Q+ T+E D+AFG NL L+ +E+ ++V +A++ VG+ +Y +
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP 142
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
LSGGQK+RVAIAG +A K+L+LDE T LD + ++ +K L +T + V
Sbjct: 143 FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE-LHKEYNMTIILV 201
Query: 217 THRLEEL-EYADGAFYMEDGKIVMQ 240
+H +E++ + AD M GK +Q
Sbjct: 202 SHSMEDVAKLADRIIVMNKGKCELQ 226
|
Length = 287 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-39
Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK------------- 98
P L + + + G+ ++G NG GKSTL L GLL+P G V V
Sbjct: 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75
Query: 99 -RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
+ VFQNP+ Q V TVE D+AFG NL L E+R +V +AL +G+ Y R +
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
TLSGGQ Q VA+AG L + L+ DE+T+ LD V+E +K L + G+ T +++T
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK-LHEKGK-TIVYIT 193
Query: 218 HRLEELEYADGAFYMEDGKIVMQADGVSILN 248
H LEEL AD M+ GKIV++ + ++L+
Sbjct: 194 HNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-38
Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 21/212 (9%)
Query: 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
N+++S K IL D S + +G++ L G NG GK+TL K+LAGL+K ++G + +
Sbjct: 4 NISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 98 --------KRPKS--FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG 147
+R KS +V Q+ D+Q+ +V ++ GL L D + L +
Sbjct: 60 NGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL----DAGNEQAETVLKDLD 115
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ +R +LSGGQKQR+AIA AL +L+ DE T+ LD + V E ++ L
Sbjct: 116 LYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 208 SGEVTALWVTHRLEEL-EYADGAFYMEDGKIV 238
+ +TH E L + D + +G IV
Sbjct: 176 --GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-38
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 17/203 (8%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY---------------VK 98
L+ + ++ G++ +LG NG GKSTL + L G+LKP++G + ++
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158
VFQ+PD+Q+ +V DV+FG NL L DEVR +V AL G+ + +P
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LS GQK+RVAIAG L KVL+LDE T LD +++ + + + G +T + TH
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATH 200
Query: 219 RLEELE-YADGAFYMEDGKIVMQ 240
++ + Y D F M++G++++Q
Sbjct: 201 DIDIVPLYCDNVFVMKEGRVILQ 223
|
Length = 283 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 3e-38
Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 31/242 (12%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+ NL+ + L + S + G+ ++G +G GKSTL ++LAGL KP++
Sbjct: 3 LLSVRNLSIVY-GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 93 GHVYV--------KRPKSF------VFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVR 136
G + + KR K+F VFQ+P + P TV ++ L L + +
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPY-SSLNPRRTVGRILSEPLRPHGL--SKSQ 118
Query: 137 SKVAKALDAVGMSN-YLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
++A+ LD VG+ +L R P + LSGGQ+QR+AIA AL K+L+LDE T+ LD S Q
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHE-LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 195 FGVIEAVKNLLGDSGE---VTALWVTHRLEELEY-ADGAFYMEDGKIVMQADGVSILNFI 250
++ NLL + + +T L+++H L +E+ D M++G+IV +L+
Sbjct: 178 AQIL----NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHP 233
Query: 251 KS 252
Sbjct: 234 SH 235
|
Length = 252 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 5e-38
Identities = 83/230 (36%), Positives = 111/230 (48%), Gaps = 27/230 (11%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------- 97
KK+ L D S + SG+L LLGP+G GKSTLL+++AGL P G + +
Sbjct: 9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFD 68
Query: 98 -------KRPKSFVFQNP---DHQVVMPTVEADVAFGL--GNLNLTHDEVRSKVAKALDA 145
R FVFQ+ H TV ++AFGL + E+R++V + L
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHM----TVADNIAFGLKVRKERPSEAEIRARVEELLRL 124
Query: 146 VGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
V + R P Q LSGGQ+QRVA+A ALA KVLLLDE LD + +
Sbjct: 125 VQLEGLADRYPAQ-LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR-KELRRWLRK 182
Query: 205 LGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILNFIKSR 253
L D VT ++VTH EE LE AD + G+I + + SR
Sbjct: 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232
|
Length = 345 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-37
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 29/227 (12%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
IE N+ I + V L+D + + +G+ ++GP+G GKSTLL +L GL KPT+
Sbjct: 1 MIELKNV-SKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS 59
Query: 93 GHVYVK---------------RPK--SFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHD 133
G V + R K FVFQN + ++P TV +V L +
Sbjct: 60 GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN---LLPDLTVLENVELPLLIAGKSAG 116
Query: 134 EVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE- 191
+ + L+ +G+ L++ LSGGQ+QRVAIA AL K++L DE T LD
Sbjct: 117 RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 192 -SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+ + V+E ++ L + G T + VTH E +YAD ++DGKI
Sbjct: 177 TAKE--VLELLRELNKERG-KTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-37
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 47/203 (23%)
Query: 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH 94
E NL++ + L + S ++ +G++ L+GPNG GKSTLL+ +AGLLKPT+G
Sbjct: 1 EIENLSFRYGGR-----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE 55
Query: 95 VYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
+ + D + + + +G
Sbjct: 56 ILI--------------------------------DGKDIAKLPLEELRRRIGY------ 77
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
V LSGGQ+QRVA+A AL +LLLDE T+ LD + + ++E ++ L T +
Sbjct: 78 -VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVI 134
Query: 215 WVTHRLEELE-YADGAFYMEDGK 236
VTH E E AD ++DGK
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-37
Identities = 83/212 (39%), Positives = 108/212 (50%), Gaps = 38/212 (17%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRP 100
L D S +PSG+L LLGP+G GK+TLL+++AGL +P +G + +R
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 101 KSFVFQNPDHQVVMP--TVEADVAFGL----GNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
FVFQ H + TV +VAFGL + E+R+KV + L V + R
Sbjct: 76 VGFVFQ---HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR 132
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV--KNL------LG 206
LSGGQ+QRVA+A ALA KVLLLDE FG ++A K L L
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDE---------PFGALDAKVRKELRRWLRRLH 183
Query: 207 DSGEVTALWVTHRLEE-LEYADGAFYMEDGKI 237
D VT ++VTH EE LE AD M G+I
Sbjct: 184 DELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-37
Identities = 81/204 (39%), Positives = 111/204 (54%), Gaps = 26/204 (12%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPK 101
L+D S SV G+ LLGP+GCGK+TLL+++AGL + T G +Y KR
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 102 SFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR-PVQT 158
VFQ+ + P TV ++A+GL N + EV +VA+ LD VG+ ++ P Q
Sbjct: 79 GIVFQS---YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ- 134
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL---LGDSGEVTALW 215
LSGGQ+QRVA+A ALA + +LLLDE + LD + + ++ L LG VT +
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG----VTTIM 190
Query: 216 VTHRLEE-LEYADGAFYMEDGKIV 238
VTH EE L AD M G I
Sbjct: 191 VTHDQEEALSMADRIVVMNHGVIE 214
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 7e-36
Identities = 78/206 (37%), Positives = 110/206 (53%), Gaps = 20/206 (9%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--------KRPKSF-- 103
L D + S+PSG ++G G GKSTLL+ L GLL+PT+G V + K+ K
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 104 -------VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRP 155
VFQ P+HQ+ TVE D+ FG N ++ ++ + K + ++ VG+ L R
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS 142
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215
LSGGQ +RVAIAG LA +VL+LDE T LD + ++E L + G T L
Sbjct: 143 PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL- 201
Query: 216 VTHRLEEL-EYADGAFYMEDGKIVMQ 240
VTH +E+ YAD M G + +Q
Sbjct: 202 VTHSMEDAARYADQIVVMHKGTVFLQ 227
|
Length = 290 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 9e-36
Identities = 78/206 (37%), Positives = 108/206 (52%), Gaps = 34/206 (16%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKS 102
L D + VP+G L LLGP+G GKSTLL+++AGL +P +G + + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 103 FVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160
FVFQ H + TV ++AFGL +++++V + L+ V + R LS
Sbjct: 76 FVFQ---HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLS 132
Query: 161 GGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV--KNL------LGDSGEVT 212
GGQ+QRVA+A ALA +VLLLDE FG ++A K L L D VT
Sbjct: 133 GGQRQRVALARALAVEPQVLLLDE---------PFGALDAKVRKELRSWLRKLHDEVHVT 183
Query: 213 ALWVTHRLEE-LEYADGAFYMEDGKI 237
++VTH EE +E AD M +GKI
Sbjct: 184 TVFVTHDQEEAMEVADRIVVMSNGKI 209
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-35
Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 35/235 (14%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
+E NL+ + + +L D S ++ G++ +LGPNG GKSTLL+ L+G L P
Sbjct: 1 AMLEARNLSVRLGGRT-----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD 55
Query: 92 NGHVYVK-RPKSFVFQNPDHQV-----VMP---------TVEADVAFGLGNLNLTHDEVR 136
+G V + RP + ++ V+P TVE VA G L+ E
Sbjct: 56 SGEVRLNGRPLA---DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDD 112
Query: 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA------EACKVLLLDELTTFLD 190
+ VA AL V +++ R LSGG++QRV +A LA + LLLDE T+ LD
Sbjct: 113 ALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL--EYADGAFYMEDGKIVMQADG 243
+ Q V+ + L + G + + V H L L YAD + G++V ADG
Sbjct: 173 LAHQHHVLRLARQLAHERG-LAVIVVLHDL-NLAARYADRIVLLHQGRLV--ADG 223
|
Length = 258 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-35
Identities = 87/280 (31%), Positives = 129/280 (46%), Gaps = 38/280 (13%)
Query: 10 TPHLLSPPHSIHPSRIDGIESGVAIECSNLN--YSITK----KQRKLVPILRDCSFSVPS 63
P L I R + + + NL+ Y K ++R V + D SF +
Sbjct: 258 VPRLGDEKI-IRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE 316
Query: 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---------------KRPKSFVFQNP 108
G+ L+G +G GKSTL ++LAGLL P++G + +R VFQ+P
Sbjct: 317 GETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376
Query: 109 D-----HQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS-NYLQRPVQTLSG 161
TV +A L E R++VA+ L+ VG+ +L R LSG
Sbjct: 377 YSSLNPRM----TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSG 432
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221
GQ+QRVAIA ALA K+L+LDE + LD S Q V+ +K+L + +T L+++H L
Sbjct: 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ-EELGLTYLFISHDLA 491
Query: 222 ELEY-ADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIER 260
+ Y AD M DG+IV + + Q Y +
Sbjct: 492 VVRYIADRVAVMYDGRIVEEGPTEKVFENP---QHPYTRK 528
|
Length = 539 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 5e-34
Identities = 66/203 (32%), Positives = 101/203 (49%), Gaps = 27/203 (13%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------------K 98
F + ++ + G +G GKSTLL+ +AGL KP G + + +
Sbjct: 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 99 RPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
R VFQ + P V ++AFGL D + V + LD +G+ + L R
Sbjct: 75 RKIGLVFQQ---YALFPHLNVRENLAFGLKRKRNREDRIS--VDELLDLLGLDHLLNRYP 129
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
LSGG+KQRVA+A ALA ++LLLDE + LD + + ++ +K + + + ++V
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN-IPVIFV 188
Query: 217 THRLEELEY-ADGAFYMEDGKIV 238
TH L E EY AD MEDG++
Sbjct: 189 THDLSEAEYLADRIVVMEDGRLQ 211
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-33
Identities = 69/202 (34%), Positives = 109/202 (53%), Gaps = 18/202 (8%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KR 99
V L D + + G+ +LLGP+GCGK+T L+++AGL +PT+G +Y+ R
Sbjct: 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR 72
Query: 100 PKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
+ VFQN + P TV ++AFGL + DE+ +V + + + + + L R +
Sbjct: 73 DIAMVFQN---YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK 129
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
LSGGQ+QRVA+ A+ KV L+DE + LD + + +K L G T ++VT
Sbjct: 130 QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVT 188
Query: 218 H-RLEELEYADGAFYMEDGKIV 238
H ++E + AD M DG+I
Sbjct: 189 HDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-33
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 21/225 (9%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
A+E + L++ + L D SF+V G+ LLGPNG GKSTL +L L
Sbjct: 1 ALEVAGLSFRYGAR-----RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE 55
Query: 93 GHVYV------KRPKS------FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
G + V + P++ VFQ P + + +V ++ + L+ E R+++A
Sbjct: 56 GQISVAGHDLRRAPRAALARLGVVFQQPTLDLDL-SVRQNLRYHAALHGLSRAEARARIA 114
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
+ L +G++ V+ L+GG ++RV IA AL +LLLDE T LD + + +
Sbjct: 115 ELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH 174
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVS 245
V+ L D G ++ LW TH ++E+E D + G+++ ADG +
Sbjct: 175 VRALARDQG-LSVLWATHLVDEIEADDRLVVLHRGRVL--ADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (306), Expect = 2e-33
Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 16/221 (7%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E NL + K+ V L SFS+ G+ ++G NG GKST +++ GL + G
Sbjct: 5 LEVENLVFKYEKESD--VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
V + +R VFQNPD+Q V TVE DVAFG+ N + +E+ +V
Sbjct: 63 KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVD 122
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
+AL AV M ++ R LSGGQKQRVA+AG +A ++++LDE T+ LD + + ++
Sbjct: 123 EALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRV 182
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241
+ + + ++T L +TH L+E +D M+ G+I+ +A
Sbjct: 183 IHE-IKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEA 222
|
Length = 277 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-33
Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 27/228 (11%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE N++ + + V L D S +P G+++ ++G +G GKSTLL+++ L +PT+G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 94 HVYV----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137
V+V ++ +FQ+ + + TV +VAF L + E++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHF-NLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 138 KVAKALDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196
+VA+ L+ VG+S+ R P Q LSGGQKQRVAIA ALA K+LL DE T+ LD
Sbjct: 121 RVAELLELVGLSDKADRYPAQ-LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179
Query: 197 VIEAVKNL---LGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQ 240
++E +K++ LG +T + +TH +E + D ++ G++V +
Sbjct: 180 ILELLKDINRELG----LTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223
|
Length = 339 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 9e-33
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 50/212 (23%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE N+++S + + P+L+D S ++ G+ ++GP+G GKSTLLK+L L PT+G
Sbjct: 1 IEFKNVSFSYPGRPK---PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG 57
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
+ + D D+ +L + +R +A V Q
Sbjct: 58 EILI-----------DGV--------DLR------DLDLESLRKNIA----YV-----PQ 83
Query: 154 RPV---QT-----LSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNL 204
P T LSGGQ+QR+AIA AL +L+LDE T+ LD E++ ++EA++ L
Sbjct: 84 DPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEAL-ILEALRAL 142
Query: 205 LGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236
T + + HRL + AD ++DG+
Sbjct: 143 AKG---KTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 2e-32
Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 37/231 (16%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE L S + +L+ V G++ ++GP+G GKSTLL+++ GLL+P +G
Sbjct: 1 IELRGLTKSFGGRT-----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG 55
Query: 94 HVYV----------------KRPKSFVFQNP---DHQVVMPTVEADVAFGL-GNLNLTHD 133
V + +R +FQ+ D + TV +VAF L + L+ +
Sbjct: 56 EVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS---L-TVFENVAFPLREHTRLSEE 111
Query: 134 EVRSKVAKALDAVGMSNYL-QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-- 190
E+R V + L+AVG+ P + LSGG K+RVA+A ALA ++LL DE T LD
Sbjct: 112 EIREIVLEKLEAVGLRGAEDLYPAE-LSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQ 240
S GVI+ + L +T++ VTH L+ AD + DGKIV +
Sbjct: 171 AS---GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-32
Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 37/207 (17%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE NL+ KK L D S +V G+++ LLGPNG GK+TL+K++ GLLKP +G
Sbjct: 1 IEVRNLSKRYGKK-----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG 55
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
+ V G ++ +EV+ ++ + + L
Sbjct: 56 EIKV-------------------------LGK-DIKKEPEEVKRRIGYLPEEPSLYENL- 88
Query: 154 RPVQTL--SGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211
+ L SGG KQR+A+A AL ++L+LDE T+ LD + E ++ L +
Sbjct: 89 TVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE--GK 146
Query: 212 TALWVTHRLEELE-YADGAFYMEDGKI 237
T L +H LEE E D + +G+I
Sbjct: 147 TILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 2e-32
Identities = 80/228 (35%), Positives = 111/228 (48%), Gaps = 27/228 (11%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E NL+ S V L D SFS+ G+ L+G +G GKSTL + + GLLKPT+G
Sbjct: 2 LEVKNLSVSFPTGGGS-VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 94 HVYVK----------------RPKSFVFQNPDHQV--VMPTVEADVAFGLGNLNLTHDEV 135
+ + VFQ+P + M T+ +A L +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM-TIGEQIAEPLRIHGKLSKKE 119
Query: 136 RSKVAKALDAVGM---SNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191
K A L VG+ L R P + LSGGQ+QRVAIA ALA K+L+ DE T+ LD
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPHE-LSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIV 238
S Q +++ +K L + G +T L++TH L + AD M GKIV
Sbjct: 179 SVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 5e-32
Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 18/207 (8%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV--------YVKR---- 99
P+L+ + + L+G NGCGKSTL L+GLL+P G V Y KR
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
+ VFQ+P+ Q+ +++D+AF L NL + E+ +V +AL V ++ +P+
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI 134
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
Q LS GQK+RVAIAGAL + LLLDE T LD + + +I ++ ++ V
Sbjct: 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVII--S 192
Query: 217 THRLEEL-EYADGAFYMEDGKIVMQAD 242
+H ++ + E +D + + G+I+
Sbjct: 193 SHDIDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 6e-32
Identities = 76/228 (33%), Positives = 112/228 (49%), Gaps = 30/228 (13%)
Query: 33 AIECSNLNYSI----TKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88
I NLN+ +KQ +L D + + G++ +L GP+G GK+TLL ++ GL
Sbjct: 1 VISIRNLNHYYGHGSLRKQ-----VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR 55
Query: 89 KPTNGH----------------VYVKRPKSFVFQNPDHQVV-MPTVEADVAFGLG-NLNL 130
G V ++R ++FQ H ++ T +V L NL
Sbjct: 56 SVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQA--HNLLGFLTARQNVQMALELQPNL 113
Query: 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
++ E R + L+AVG+ ++L LSGGQKQRVAIA AL K++L DE T LD
Sbjct: 114 SYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALD 173
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
V+E ++ L + G T L VTH L+ AD +MEDGK++
Sbjct: 174 SKSGRDVVELMQKLAREQG-CTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-31
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 33/246 (13%)
Query: 28 IESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL 87
+ + + NL +KQ + L + S++ +++ ++G +G GKSTL+ GL
Sbjct: 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 88 LKPTNGHVYVK-----------------------------RPKSFVFQNPDHQVVMPTVE 118
+K G + V R S VFQ P++Q+ T+E
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 119 ADVAFGLGNLNLTHDEVRSKVAKALDAVGM-SNYLQRPVQTLSGGQKQRVAIAGALAEAC 177
D+ FG L + E + L+ +G+ +YL+R LSGGQK+RVAIAG LA
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQP 195
Query: 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGK 236
++L+ DE T LD + +++ + + + T +TH +E LE AD M+ GK
Sbjct: 196 EILIFDEPTAGLDPKGEHEMMQLILD--AKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 237 IVMQAD 242
I+
Sbjct: 254 ILKTGT 259
|
Length = 320 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-31
Identities = 71/202 (35%), Positives = 108/202 (53%), Gaps = 19/202 (9%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYV-----------KR 99
+L D S + +G+L L+G +GCGK+TLL+ +AG +K G + + KR
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 100 PKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
+ +FQN + P VE +VAFGL + ++ +VA AL VG+ +
Sbjct: 80 GLALLFQN---YALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA 136
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
LSGG +QR+AIA A+A VLLLDE + LD + + + E + L + E+T L VT
Sbjct: 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVT 196
Query: 218 H-RLEELEYADGAFYMEDGKIV 238
H + + L AD A M+DG++
Sbjct: 197 HDQDDALTLADKAGIMKDGRLA 218
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-31
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 27/205 (13%)
Query: 43 ITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----- 97
I+KK V IL D + ++ G+++ ++G +G GKSTLL ++ L K +G VY+
Sbjct: 4 ISKKFGDKV-ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET 62
Query: 98 -----------KRPK-SFVFQN---PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142
+R K ++FQN +++ TVE ++ GL L+ E R K +A
Sbjct: 63 PPLNSKKASKFRREKLGYLFQNFALIENE----TVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202
L+ VG++ L++ + LSGG++QRVA+A A+ + ++L DE T LD ++ V++ +
Sbjct: 119 LEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 203 NLLGDSGEVTALWVTHRLEELEYAD 227
L D G+ T + VTH E + AD
Sbjct: 179 ELN-DEGK-TIIIVTHDPEVAKQAD 201
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-31
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 18/209 (8%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKS 102
L++ S V G +++LGP G GKS LL+ +AG +KP +G + + KR S
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 103 FVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160
+V QN + P TV ++A+GL + E+ KV + + +G+ + L R +TLS
Sbjct: 75 YVPQN---YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLS 131
Query: 161 GGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220
GG++QRVAIA AL K+LLLDE + LD + + E +K + VT L VTH
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDF 190
Query: 221 EE-LEYADGAFYMEDGKIVMQADGVSILN 248
EE AD M +GK++ +
Sbjct: 191 EEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 4e-31
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 35/236 (14%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE NL +K L+D S S+ G+ L+GP+G GKSTLL+ L GL++PT+G
Sbjct: 1 IEVENL----SKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG 56
Query: 94 HVYV------KRPKS----------FVFQNPDHQVVMP-TVEADVAFG-LGN-------L 128
V + K +FQ ++ +V +V G LG
Sbjct: 57 SVLIDGTDINKLKGKALRQLRRQIGMIFQ--QFNLIERLSVLENVLSGRLGRRSTWRSLF 114
Query: 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
L E + + AL+ VG+ + + LSGGQ+QRVAIA AL + K++L DE
Sbjct: 115 GLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADG 243
LD + V++ +K + + G +T + H+++ EYAD ++DG+IV DG
Sbjct: 175 LDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGLKDGRIVF--DG 227
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-31
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 40/237 (16%)
Query: 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88
E + I NL++ + P L D + ++ +GQL L+G +G GKSTLL +L G L
Sbjct: 316 EPPIEISLENLSFRYPDGK----PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371
Query: 89 KPTNGHVYVK-------------RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135
PT G + V + S+V QNP + T+ ++ + +
Sbjct: 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP--YLFAGTIRENILLARPDAS------ 423
Query: 136 RSKVAKALDAVGMSNYLQRPVQ----------TLSGGQKQRVAIAGALAEACKVLLLDEL 185
++ ALD G+ ++ +P LSGGQ QR+A+A AL +LLLDE
Sbjct: 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483
Query: 186 TTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241
T LD E++Q ++ L + + T L +THRLE+ AD +++G++V Q
Sbjct: 484 TAHLDAETEQ----IILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-31
Identities = 67/209 (32%), Positives = 96/209 (45%), Gaps = 56/209 (26%)
Query: 46 KQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------- 97
K+ +L D S ++ +G++ LLGP+G GKSTLL+ +AGL +P +G + +
Sbjct: 8 KRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL 67
Query: 98 -------KRPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM 148
+R VFQ+ + P TV ++A GL
Sbjct: 68 EDELPPLRRRIGMVFQDF---ALFPHLTVLENIALGL----------------------- 101
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
SGGQ+QRVA+A ALA VLLLDE T+ LD + V +K+L
Sbjct: 102 -----------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQL 150
Query: 209 GEVTALWVTHRLEELEY-ADGAFYMEDGK 236
G +T + VTH L+E AD + DGK
Sbjct: 151 G-ITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 5e-31
Identities = 72/212 (33%), Positives = 107/212 (50%), Gaps = 45/212 (21%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRP 100
++ + ++ +G+ LLGP+GCGK+T+L+++AG P +G + + R
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87
Query: 101 KSFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
+ VFQ+ P H M TV +VAFGL E+ +V +AL V + + QR
Sbjct: 88 VNTVFQSYALFP-H---M-TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP 142
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD---------ESDQFGVIEAVKNLLGD 207
LSGGQ+QRVAIA A+ KVLLLDE + LD E ++A++ LG
Sbjct: 143 HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE------LKALQRKLG- 195
Query: 208 SGEVTALWVTHRLEELEYADGAFYMEDGKIVM 239
+T ++VTH EE A M D +VM
Sbjct: 196 ---ITFVFVTHDQEE------ALTMSDRIVVM 218
|
Length = 375 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 5e-31
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 37/242 (15%)
Query: 20 IHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKST 79
IH ++ G IE N+++ P+L D S +P G+ ++G +G GKST
Sbjct: 463 IHLPKLQG-----EIEFENVSFRYGPDDP---PVLEDLSLEIPPGEKVAIVGRSGSGKST 514
Query: 80 LLKVLAGLLKPTNGHVYV------KRPKSFVFQNPDHQVVMPTVEADVAFG--------L 125
LLK+L GL KP G + + + + + QV + F L
Sbjct: 515 LLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR----QVGYVLQD-PFLFSGSIRENIAL 569
Query: 126 GNLNLTHDEVRS--KVAKALDAV-GMSNYLQRPVQ----TLSGGQKQRVAIAGALAEACK 178
GN T +E+ ++A A + + + PV LSGGQ+QR+A+A AL K
Sbjct: 570 GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629
Query: 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+LLLDE T+ LD + +++ + +L T + + HRL + AD ++ GKIV
Sbjct: 630 ILLLDEATSALDPETEAIILQNLLQIL---QGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686
Query: 239 MQ 240
Q
Sbjct: 687 EQ 688
|
Length = 709 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-31
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 28/217 (12%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPD- 109
V L S +V G++ LLG NG GKSTL+K+L+G+ P +G + + K F +P
Sbjct: 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILI-DGKPVAFSSPRD 79
Query: 110 ---------HQVVMPTVEADVA--FGLGNLNLT------HDEVRSKVAKALDAVGMSNYL 152
HQ + VA LG +R + + L +G+
Sbjct: 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP 139
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD--ESDQ-FGVIEAVKNLLGDSG 209
V LS Q+Q V IA AL+ +VL+LDE T L E+++ F +I +K G
Sbjct: 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK----AQG 195
Query: 210 EVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVS 245
V ++++HRL+E E AD + DG++V +
Sbjct: 196 -VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-30
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 42/233 (18%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ NL K IL D S S+P+G++ L+GPNGCGKSTLLK A LL P +G
Sbjct: 3 LRTENLTVGYGTK-----RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG 57
Query: 94 HVYVK-------------RPKSFVFQNPDHQVVMP---TVEADVAFG-------LGNLNL 130
V++ R + + Q + P TV VA+G G L+
Sbjct: 58 TVFLGDKPISMLSSRQLARRLALLPQ----HHLTPEGITVRELVAYGRSPWLSLWGRLS- 112
Query: 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
E ++V +A++ +++ R + LSGGQ+QR +A LA+ V+LLDE TT+LD
Sbjct: 113 --AEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
Query: 191 ESDQFGVIEAVKNL--LGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQ 240
+ Q +E ++ + L G+ T + V H L + Y D + +G ++ Q
Sbjct: 171 INHQ---VELMRLMRELNTQGK-TVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219
|
Length = 255 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-30
Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 32/229 (13%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE NL+ S K+ +L+ S SV G++ +++GP+G GKSTLL+ L GL +P +G
Sbjct: 3 IEIKNLSKSFGDKE-----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG 57
Query: 94 HVYVK-------------RPK-SFVFQNPD---HQVVMPTVEADVAFGLGN-LNLTHDEV 135
+ V R K VFQ + H TV +V L+ E
Sbjct: 58 SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHL----TVLENVTLAPVKVKKLSKAEA 113
Query: 136 RSKVAKALDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
R K + L+ VG+++ P Q LSGGQ+QRVAIA ALA KV+L DE T+ LD
Sbjct: 114 REKALELLEKVGLADKADAYPAQ-LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELV 172
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQAD 242
V++ +K+ L + G +T + VTH + E AD +M+ GKI+ +
Sbjct: 173 GEVLDVMKD-LAEEG-MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 3e-30
Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 19/222 (8%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFV 104
D S ++ G+++ LLG +GCGKSTLL++LAG +PT G + + +RP + +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96
Query: 105 FQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162
FQ+ + P TVE ++AFGL L E+ S+V + L V M + +R LSGG
Sbjct: 97 FQS---YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGG 153
Query: 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
Q+QRVA+A +LA+ K+LLLDE LD+ + + V ++L G VT + VTH EE
Sbjct: 154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEE 212
Query: 223 -LEYADGAFYMEDGKIVMQADGVSILNFIKSRQSS-YIERIN 262
+ A M GK V + I +R S+ +I +N
Sbjct: 213 AMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVN 254
|
Length = 377 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-29
Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 38/231 (16%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---- 89
IE +LN K L+D S +P G++ L+GP+GCGKSTLL++L L
Sbjct: 1 IELRDLNVYYGDKH-----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPG 55
Query: 90 -PTNGHVY---------------VKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLN--L 130
P G V ++R VFQ P+ P ++ +VA+GL L+
Sbjct: 56 APDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN---PFPGSIYDNVAYGL-RLHGIK 111
Query: 131 THDEVRSKVAKALDAVGMSNYLQRPVQ--TLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
+E+ +V +AL + + ++ + LSGGQ+QR+ +A ALA +VLLLDE T+
Sbjct: 112 LKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIV 238
LD + E + L E T + VTH +++ AD ++ +G++V
Sbjct: 172 LDPISTAKIEELIAEL---KKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-29
Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 29/205 (14%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT------NGHVYVKRPK------ 101
+R SF V G+++ LLGPNG GK+T +K+L LLKPT GH V+ P+
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 102 SFVFQNPDHQVVMPTVEADVAFGLGNL-------NLTHDEVRSKVAKALDAVGMSNYLQR 154
VFQ +V+ ++ G NL + E R ++ + LD VG+ R
Sbjct: 76 GIVFQ-------DLSVDDELT-GWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR 127
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
V+T SGG ++R+ IA +L +VL LDE T LD + V E ++ L + G +T L
Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG-MTIL 186
Query: 215 WVTHRLEELE-YADGAFYMEDGKIV 238
TH +EE E D ++ G+I+
Sbjct: 187 LTTHYMEEAEQLCDRVAIIDHGRII 211
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-29
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 28/226 (12%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I NL+YS+ ++ +L S + G++ +LGPNG GKSTLLK L+G L P +G
Sbjct: 2 IRAENLSYSLAGRR-----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSG 56
Query: 94 HVYVKRPKSFVFQNPD---HQVVMP---------TVEADVAFGL--GNLNLTHDEVRSKV 139
V + + + H+ V+P TV+ V G +E
Sbjct: 57 EVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIA 116
Query: 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA------EACKVLLLDELTTFLDESD 193
A+AL A +S R +TLSGG++QRV +A LA + + L LDE T+ LD +
Sbjct: 117 AQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176
Query: 194 QFGVIEAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIV 238
Q + + L + G V A V H L +YAD + G+++
Sbjct: 177 QHHTLRLARQLAREGGAVLA--VLHDLNLAAQYADRIVLLHQGRVI 220
|
Length = 259 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 3e-29
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 43/190 (22%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
V L S SV G++ LLG NG GKSTL+K+L+GL KP +G + V K F +P
Sbjct: 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV-DGKEVSFASPRD 71
Query: 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA-VGMSNYLQRPVQTLSGGQKQRVAI 169
A A + M V LS G++Q V I
Sbjct: 72 -------------------------------ARRAGIAM-------VYQLSVGERQMVEI 93
Query: 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADG 228
A ALA ++L+LDE T L ++ + + ++ L G V ++++HRL+E E AD
Sbjct: 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRR-LRAQG-VAVIFISHRLDEVFEIADR 151
Query: 229 AFYMEDGKIV 238
+ DG++V
Sbjct: 152 VTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-29
Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 41/230 (17%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+IE +N+ S + Q +L D S +PSGQ+ LLGP+G GK+TLL+++AGL T+
Sbjct: 2 SIEIANIKKSFGRTQ-----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS 56
Query: 93 GHVYVK-----------RPKSFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRS 137
GH+ R FVFQ+ M TV ++AFGL L +++
Sbjct: 57 GHIRFHGTDVSRLHARDRKVGFVFQHYALFRHM-TVFDNIAFGLTVLPRRERPNAAAIKA 115
Query: 138 KVAKALDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196
KV + L+ V +++ R P Q LSGGQKQRVA+A ALA ++LLLDE FG
Sbjct: 116 KVTQLLEMVQLAHLADRYPAQ-LSGGQKQRVALARALAVEPQILLLDE---------PFG 165
Query: 197 VIEAV--KNL------LGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKI 237
++A K L L + + T+++VTH EE +E AD M G I
Sbjct: 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215
|
Length = 353 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 7e-29
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 18/197 (9%)
Query: 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVFQNP 108
+VP+G++ +LGP+G GKSTLL ++AG P +G + + +RP S +FQ
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ-- 78
Query: 109 DHQVVMP-TVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166
++ + TV ++ GL L L ++ R KV A VG++ +L+R LSGGQ+QR
Sbjct: 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQ-REKVEAAAAQVGLAGFLKRLPGELSGGQRQR 137
Query: 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EY 225
VA+A L +LLLDE + LD + + ++ V L + +T L VTH E+
Sbjct: 138 VALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK-MTLLMVTHHPEDAARI 196
Query: 226 ADGAFYMEDGKIVMQAD 242
AD ++++G+I Q
Sbjct: 197 ADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-29
Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 34/202 (16%)
Query: 46 KQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVF 105
+++ V + SFS+ G+ L+G +GCGKSTL +++ GL +PT+G + +
Sbjct: 21 GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFE------- 73
Query: 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQK 164
G L+ +E R +V + L+ VG+ +L R LSGGQ+
Sbjct: 74 ------------------GKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115
Query: 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV---TALWVTHRLE 221
QR+ IA ALA K+++ DE + LD S Q ++ NLL D E T L+++H L
Sbjct: 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQIL----NLLKDLQEELGLTYLFISHDLS 171
Query: 222 ELEY-ADGAFYMEDGKIVMQAD 242
+ Y +D M GKIV
Sbjct: 172 VVRYISDRIAVMYLGKIVEIGP 193
|
Length = 268 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-29
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 36/221 (16%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--------------- 98
+ D S V G++++++G +G GKSTL+++L L++PT G + V
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 99 --RPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
+ S VFQ+ ++P TV +VAFGL + E + +AL+ VG+ Y +
Sbjct: 104 RRKKISMVFQS---FALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK 160
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE------SDQFGVIEAVKNLLGDS 208
LSGG +QRV +A ALA +LL+DE + LD D+ +E L
Sbjct: 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL--LELQAKL---- 214
Query: 209 GEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
+ T +++TH L+E L D M+DG+IV IL
Sbjct: 215 -KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 24/213 (11%)
Query: 46 KQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY--------- 96
K+ + D S V G++++++G +G GKSTLL+ + L++PT+G V
Sbjct: 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAM 91
Query: 97 -------VKRPK-SFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAV 146
++R K S VFQ ++P TV +VAFGL + E + A+AL+ V
Sbjct: 92 SRKELRELRRKKISMVFQ---SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV 148
Query: 147 GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
G+ + + LSGG +QRV +A ALA +LL+DE + LD + + + + L
Sbjct: 149 GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 207 DSGEVTALWVTHRLEE-LEYADGAFYMEDGKIV 238
+ + T +++TH L+E L D M+DG++V
Sbjct: 209 ELQK-TIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-28
Identities = 72/213 (33%), Positives = 118/213 (55%), Gaps = 20/213 (9%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---- 97
+ITK+ I + + ++ G + LLGP+GCGK+T+L+++AGL KPT G +++
Sbjct: 11 NITKRFGSNTVI-DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGED 69
Query: 98 -------KRPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM 148
+R VFQ+ + P ++ +V +GL L + +E + +V +AL+ V +
Sbjct: 70 VTHRSIQQRDICMVFQS---YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL 126
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
+ + R V +SGGQ+QRVA+A AL KVLL DE + LD + + + E ++ L
Sbjct: 127 AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF 186
Query: 209 GEVTALWVTH-RLEELEYADGAFYMEDGKIVMQ 240
+T+L+VTH + E +D M GKI MQ
Sbjct: 187 N-ITSLYVTHDQSEAFAVSDTVIVMNKGKI-MQ 217
|
Length = 351 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-28
Identities = 72/235 (30%), Positives = 119/235 (50%), Gaps = 40/235 (17%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
IE N+++S ++ P L + S ++ +G+ ++G G GKSTLLK+LAGL KPT+
Sbjct: 2 RIEFRNVSFSYPNQEI---PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS 58
Query: 93 GHVY-------------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139
G V ++R +V Q+ + T+ ++ G D+ R +
Sbjct: 59 GSVLLDGTDIRQLDPADLRRNIGYVPQDV--TLFYGTLRDNITLG----APLADDER--I 110
Query: 140 AKALDAVGMSNY-------LQRPV----QTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
+A + G++++ L + + LSGGQ+Q VA+A AL +LLLDE T+
Sbjct: 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADG 243
+D + + + E ++ LLGD T + +THR L+ D M+ G+IV ADG
Sbjct: 171 MDMNSEERLKERLRQLLGDK---TLIIITHRPSLLDLVDRIIVMDSGRIV--ADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-28
Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 26/226 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRP 100
L D + ++ G +G G GKST++++L GL PT G V V K
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
Query: 101 KS------FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL-- 152
K VFQ P+ Q+ TV DVAFG N ++ +E + + L VG+S L
Sbjct: 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE 140
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212
+ P + LSGGQ +RVAIAG LA K+L+LDE T LD + ++ K L SG +T
Sbjct: 141 KNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK-LHQSG-MT 197
Query: 213 ALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI---LNFIKSRQ 254
+ VTH ++++ YAD + +E GK+V+ I ++F++ +Q
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKQ 243
|
Length = 280 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-28
Identities = 68/188 (36%), Positives = 101/188 (53%), Gaps = 18/188 (9%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVFQNPDHQVVMP-- 115
LLGP+GCGK+TLL++LAG +P +G + + R + VFQ+ + P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQS---YALFPHM 57
Query: 116 TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175
TVE +VAFGL + E++ +V +AL V + + R LSGGQ+QRVA+A AL
Sbjct: 58 TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117
Query: 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMED 234
K+LLLDE + LD+ + + +K + G +T ++VTH EE + +D M
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG-ITFVFVTHDQEEAMTMSDRIAIMRK 176
Query: 235 GKIVMQAD 242
GKI
Sbjct: 177 GKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-28
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 19/190 (10%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------K 98
IL + SFS+ +G+ ++ GP+GCGKSTLLK++A L+ PT+G + +
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
Query: 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-SNYLQRPVQ 157
+ S+ Q P + TV ++ F N D + L+ + L + +
Sbjct: 81 QQVSYCAQTP--TLFGDTVYDNLIFPWQIRNQQPDP--AIFLDDLERFALPDTILTKNIA 136
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
LSGG+KQR+++ L KVLLLDE+T+ LDES++ V E + + + + LWVT
Sbjct: 137 ELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN-IAVLWVT 195
Query: 218 HRLEELEYAD 227
H +E+ +AD
Sbjct: 196 HDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-28
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 49/213 (23%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E N+++ + P+LR+ SFS+ G+ ++GP+G GKSTL +++ GLL+PT+G
Sbjct: 1 LEVENVSFRYPGAEP---PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
V + D + + L D VG YL
Sbjct: 58 RVRL-----------DGADISQ-------WDPNELG--------------DHVG---YLP 82
Query: 154 RPVQ---------TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
+ + LSGGQ+QR+ +A AL ++L+LDE + LD + + +A+ L
Sbjct: 83 QDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142
Query: 205 LGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+ T + + HR E L AD +EDG++
Sbjct: 143 --KAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 9e-28
Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 22/185 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRP---KSF 103
P L D + ++ SG+L ++LGP+GCGK+TLL ++AG + +G + V+ P +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 104 VFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSG 161
VFQ ++ ++P V+ +VAFGL + + + L VG+ +R + LSG
Sbjct: 75 VFQ---NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSG 131
Query: 162 GQKQRVAIAGALAEACKVLLLDE----LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
GQ+QRV IA ALA ++LLLDE L F E Q + L ++G+ L +T
Sbjct: 132 GQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ----TLLLKLWQETGK-QVLLIT 186
Query: 218 HRLEE 222
H +EE
Sbjct: 187 HDIEE 191
|
Length = 255 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-27
Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 37/227 (16%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
++ NL KK+ L S ++ G ++ LLGPNG GK+TL+++LA L P++G
Sbjct: 1 LQLENLTKRYGKKR-----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG 54
Query: 94 HVYV------KRPKSFVFQNPDHQVV--MP---------TVEADVAFGLGNLN-LTHDEV 135
+ + K+P+ + + +P TV + + + L + EV
Sbjct: 55 TIRIDGQDVLKQPQKL------RRRIGYLPQEFGVYPNFTVREFLDY-IAWLKGIPSKEV 107
Query: 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195
+++V + L+ V + + ++ + +LSGG ++RV IA AL +L++DE T LD ++
Sbjct: 108 KARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER- 166
Query: 196 GVIEAVKNLLGDSGE-VTALWVTHRLEELEY-ADGAFYMEDGKIVMQ 240
+NLL + GE + TH +E++E + + GK+V +
Sbjct: 167 ---IRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-27
Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 31/231 (13%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
IE NL+ + + L+D + + G++ ++GP+G GKSTLL+ L GL+ PT+
Sbjct: 3 MIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS 58
Query: 93 GHVYV------KRPKS----------FVFQNPDHQVVMPTVEADVAFGLGN--------L 128
G + K +FQ + V +V +V G
Sbjct: 59 GEILFNGVQITKLKGKELRKLRRDIGMIFQQFN-LVPRLSVLENVLLGRLGYTSTWRSLF 117
Query: 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
L E +++ AL+ VG+ + + TLSGGQ+QRVAIA AL + K++L DE
Sbjct: 118 GLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIV 238
LD V++ +K++ + G +T + H+++ +YAD ++ G+IV
Sbjct: 178 LDPESAKKVMDILKDINQEDG-ITVIVNLHQVDLAKKYADRIIGLKAGRIV 227
|
Length = 258 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-27
Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 45/259 (17%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ N+ KK + L + S + G+ ++G G GK+T ++ L LL P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 94 HV-----------------------YVKRPKS--------------FVFQNPDHQVVMPT 116
+ +++ + VFQ ++Q+ T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 117 VEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAE 175
+E D+ FG ++ ++ +E + + AK ++ VG+ +YLQR LSGGQK+RVA+AG LA
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM 182
Query: 176 ACKVLLLDELTTFLDESDQFGVIEAVKNL--LGDSGEVTALWVTHRLEE-LEYADGAFYM 232
L+ DE T LD GV E ++ L G+ T + VTH L+ LE+ +
Sbjct: 183 EPDFLVFDEPTAGLDPQ---GVKEILEIFDNLNKQGK-TIILVTHDLDNVLEWTKRTIFF 238
Query: 233 EDGKIVMQADGVSILNFIK 251
+DGKI+ D IL+ K
Sbjct: 239 KDGKIIKDGDTYDILSDNK 257
|
Length = 305 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-27
Identities = 71/215 (33%), Positives = 98/215 (45%), Gaps = 21/215 (9%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------- 97
I+ + P G L LLGPNG GKSTLL++LAG L+P G V +
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 98 KRPKSFVFQNPDHQVVMPTVEADVAFG----LGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
R + V Q+ D V + TV VA G + V +AL +S+
Sbjct: 74 ARRVALVEQDSDTAVPL-TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD 132
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213
R + TLSGG++QRV +A ALA+ K+LLLDE T LD Q + V+ L VT
Sbjct: 133 RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT--GVTV 190
Query: 214 LWVTHRLE-ELEYADGAFYMEDGKIVMQADGVSIL 247
+ H L Y D ++ G++V +L
Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-27
Identities = 66/203 (32%), Positives = 103/203 (50%), Gaps = 26/203 (12%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE ++YS K+ IL+D S G ++ ++GP+G GKSTL+K++ L+ PT G
Sbjct: 4 IEFKEVSYSSFGKE-----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG 58
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
+ + +R VFQ P + TV+ ++ +G + E V
Sbjct: 59 SILIDGVDIKTIDVIDLRRKIGMVFQQP--HLFEGTVKDNIEYG----PMLKGEKNVDVE 112
Query: 141 KALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199
L VG++ Y R V+ LSGG+ QRV+IA LA +VLLLDE T+ LD + + E
Sbjct: 113 YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 200 AVKNLLGDSGEVTALWVTHRLEE 222
+ L +T +W+TH +E+
Sbjct: 173 LIVKLKNKMN-LTVIWITHNMEQ 194
|
Length = 241 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-27
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 35/213 (16%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------K 98
P+LRD S +P+G+ L+GP+G GKSTL+ ++ +G + + +
Sbjct: 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLR 75
Query: 99 RPKSFVFQNP----DHQVVMPTVEADVAFGLGNLNLTHDEVRS--KVAKALDAV-GMSNY 151
R V Q+ D TV ++A+G T +EV + A A + + +
Sbjct: 76 RQIGLVSQDVFLFND------TVAENIAYG--RPGATREEVEEAARAANAHEFIMELPEG 127
Query: 152 LQRPVQ----TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ LSGGQ+QR+AIA AL + +L+LDE T+ LD + V A++ L+ +
Sbjct: 128 YDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN 187
Query: 208 SGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
T + HRL +E AD +EDGKIV +
Sbjct: 188 R---TTFVIAHRLSTIENADRIVVLEDGKIVER 217
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-27
Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 48 RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----KRPKS 102
+ P + D S +V G+++ LLG NG GK+T LK+L G L+PT+G Y+ + +
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRK 71
Query: 103 FVFQN----PDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
Q+ P + TV + F L E++ +V L +G+++ +
Sbjct: 72 AARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA 131
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
+TLSGG K+++++A AL VLLLDE T+ LD + + + + + + + +
Sbjct: 132 RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR---SIILT 188
Query: 217 THRLEELEY-ADGAFYMEDGKIVM 239
TH ++E E D M DGK+
Sbjct: 189 THSMDEAEALCDRIAIMSDGKLRC 212
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-27
Identities = 71/199 (35%), Positives = 100/199 (50%), Gaps = 27/199 (13%)
Query: 43 ITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----- 97
++K LRD SF +P G+ L GP+G GKSTLLK++ G +PT G + V
Sbjct: 7 VSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDL 66
Query: 98 -----------KRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDA 145
+R VFQ D +++ TV +VA L + E+R +V++ LD
Sbjct: 67 SRLKGREIPFLRRQIGVVFQ--DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDL 124
Query: 146 VGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK-- 202
VG+ + + P Q LSGG++QRVAIA A+ VLL DE T LD + ++ +
Sbjct: 125 VGLKHKARALPSQ-LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 203 NLLGDSGEVTALWVTHRLE 221
N LG T L TH LE
Sbjct: 184 NRLG----TTVLMATHDLE 198
|
Length = 223 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-27
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 23/230 (10%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
++I+ N++Y + L + SF + G L+G G GKSTL++ LLKP+
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 92 NGHVYV-----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDE 134
+G + + ++ S VFQ P+ Q+ TV DV FG N + DE
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 135 VRSKVAKALDAVGMSNYL--QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192
+ K K L VG+S L + P + LSGGQ +RVAIAG +A ++L LDE LD
Sbjct: 121 AKEKALKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
Query: 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241
+ +++ K+ T + VTH ++++ EYAD +E GK++ A
Sbjct: 180 GRKEMMQLFKDY--QKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHA 227
|
Length = 287 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-27
Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 26/206 (12%)
Query: 47 QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RP----- 100
+ K L D S ++ SG+L ++LGP+GCGK+TLL ++AG + P+ G + + R
Sbjct: 14 EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG 73
Query: 101 --KSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
+ VFQN ++P V +VAFGL + + R + L VG+ + +
Sbjct: 74 AERGVVFQNE---ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI 130
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA--- 213
LSGG +QRV IA ALA ++LLLDE LD E ++ LL D + T
Sbjct: 131 WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA----LTREQMQELLLDLWQETGKQV 186
Query: 214 LWVTHRLEELEYADGAFYMEDGKIVM 239
L +TH +EE A ++ +V+
Sbjct: 187 LLITHDIEE------ALFLATRLVVL 206
|
Length = 259 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-27
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 41/220 (18%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRPKSF----- 103
L D SFSV G++ L+GPNG GK+TL +++G L+PT+G V +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 104 ----VFQNP---DHQVVMPTVEADVAFGLGNLNLTH------DEVRSKVAKALDAVGMSN 150
FQ P V+ V G+ L E R + + L+ VG+++
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210
RP LS GQ++R+ IA ALA K+LLLDE L+ + + E ++ L + G
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE-LRERG- 193
Query: 211 VTALWVTHRLEELEYADGAFYMEDGKIVMQ-ADGVSILNF 249
+T L V H + +VM AD V++L+
Sbjct: 194 ITVLLVEHDM---------------DVVMSLADRVTVLDQ 218
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-27
Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 31/224 (13%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE NL+ S +L+ +V G++ +++GP+G GKSTLL+ + L +P +G
Sbjct: 1 IEIKNLHKSFGDFH-----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG 55
Query: 94 HVYVK--------------RPK-SFVFQNPD---HQVVMPTVEADVAFGLGN-LNLTHDE 134
+ + R K VFQ + H TV ++ ++ E
Sbjct: 56 TIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL----TVLENITLAPIKVKGMSKAE 111
Query: 135 VRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
+ + L+ VG+++ LSGGQ+QRVAIA ALA KV+L DE T+ LD
Sbjct: 112 AEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKI 237
V++ +K+ L + G +T + VTH + E AD +M+DG+I
Sbjct: 172 GEVLDVMKD-LAEEG-MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 6e-27
Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 40/255 (15%)
Query: 13 LLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGP 72
+L + +G A+E N++++ +Q L++ + ++ G+ +LG
Sbjct: 316 ILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQT---KALKNFNLTLAQGEKVAILGR 372
Query: 73 NGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVFQNPDHQVVMPTVEADV 121
+G GKSTLL++LAG P G + + ++ + T+ ++
Sbjct: 373 SGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNL 432
Query: 122 AFGLGNLNLTHDEVRSKVAKALDAVGMSNYL-QRPV----------QTLSGGQKQRVAIA 170
L N + + DE ++ AL VG+ L P + LSGG+++R+A+A
Sbjct: 433 R--LANPDAS-DE---ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486
Query: 171 GALAEACKVLLLDELTTFLD---ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227
AL + LLDE T LD E ++ + T L VTHRL LE D
Sbjct: 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEH------AEGKTLLMVTHRLRGLERMD 540
Query: 228 GAFYMEDGKIVMQAD 242
+++GKI+ +
Sbjct: 541 RIIVLDNGKIIEEGT 555
|
Length = 573 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-27
Identities = 70/220 (31%), Positives = 112/220 (50%), Gaps = 28/220 (12%)
Query: 42 SITKK---QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV- 97
+++K V L+D S SVP G+++ ++G +G GKSTL++ + GL +PT+G V V
Sbjct: 6 NVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65
Query: 98 ---------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142
+R +FQ+ + + TV +VA L + E+ +V +
Sbjct: 66 GTDLTLLSGKELRKARRRIGMIFQH-FNLLSSRTVFENVALPLEIAGVPKAEIEERVLEL 124
Query: 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202
L+ VG+ + LSGGQKQRV IA ALA KVLL DE T+ LD ++ ++
Sbjct: 125 LELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLR 184
Query: 203 NL---LGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV 238
++ LG +T + +TH +E + D ME G++V
Sbjct: 185 DINRELG----LTIVLITHEMEVVKRICDRVAVMEKGEVV 220
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-27
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 20/198 (10%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVFQ 106
+ G++ ++GP+G GKSTLL ++AG P +G V + RP S +FQ
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 107 NPDHQVVMP--TVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ 163
+ + TVE +V GL L LT E R + AL VG++ +R LSGG+
Sbjct: 78 ENN---LFAHLTVEQNVGLGLSPGLKLT-AEDRQAIEVALARVGLAGLEKRLPGELSGGE 133
Query: 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223
+QRVA+A L VLLLDE LD + + +++ V +L ++ +T L VTH+ E+
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK-MTVLMVTHQPEDA 192
Query: 224 EY-ADGAFYMEDGKIVMQ 240
+ A ++++G+I Q
Sbjct: 193 KRLAQRVVFLDNGRIAAQ 210
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 37/229 (16%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNGHVYVK-------- 98
VP +RD SF V G++ ++G +G GKSTL L GLL T+G V +
Sbjct: 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81
Query: 99 -RPK--------SFVFQ------NPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKAL 143
R + +FQ NP + EA G + E R + + L
Sbjct: 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG----KGSRAEARKRAVELL 137
Query: 144 DAVGMSNYLQR---PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
+ VG+ + +R P Q LSGG +QRV IA ALA K+L+ DE TT LD + Q +++
Sbjct: 138 EQVGLPDPERRDRYPHQ-LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 201 VKNLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIVMQADGVSILN 248
+K+L + G + L++TH L + AD M G+IV IL+
Sbjct: 197 LKDLQRELG-MAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 40/238 (16%)
Query: 29 ESGVAIECSNLNYSITKKQRKLV--PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86
V IE +L I K + P+ +F++P+GQ L+GP+G GK++LL L G
Sbjct: 345 NDPVTIEAEDL--EILSPDGKTLAGPL----NFTLPAGQRIALVGPSGAGKTSLLNALLG 398
Query: 87 LLKPTNGHVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD 133
L P G + + ++ S+V QNP Q+ T+ +V LGN + + +
Sbjct: 399 FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNP--QLPHGTLRDNVL--LGNPDASDE 453
Query: 134 EVRSKVAKA-----LDAVGMSNYLQRPVQ----TLSGGQKQRVAIAGALAEACKVLLLDE 184
+++ + A L + L P+ LS GQ QR+A+A AL + C++LLLDE
Sbjct: 454 QLQQALENAWVSEFLPL--LPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242
T LD + V++A+ S T L VTH+LE+L D + M+DG+IV Q D
Sbjct: 512 PTASLDAHSEQLVMQALNAA---SRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGD 566
|
Length = 588 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-26
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 39/217 (17%)
Query: 48 RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPK------ 101
R VPIL+ S ++P G+ L+G +GCGKST++ +L PT+G + +
Sbjct: 13 RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL 72
Query: 102 -------SFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALD--------- 144
V Q P V+ T+ ++ +G + E +K A D
Sbjct: 73 RWLRSQIGLVSQEP---VLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGY 129
Query: 145 --AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAV 201
VG +R Q LSGGQKQR+AIA AL K+LLLDE T+ LD ES++ V EA+
Sbjct: 130 DTLVG-----ERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL-VQEAL 182
Query: 202 KNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ T + + HRL + AD +++G++V
Sbjct: 183 DRAMKGR---TTIVIAHRLSTIRNADLIAVLQNGQVV 216
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 45/250 (18%)
Query: 18 HSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGK 77
+H R+ G IE N++++ ++ P L + S ++ G+ ++G G GK
Sbjct: 453 RFLHRPRLQG-----EIEFRNVSFAYPGQET---PALDNVSLTIRPGEKVAIIGRIGSGK 504
Query: 78 STLLKVLAGLLKPTNGHVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFG 124
STLLK+L GL +PT G V + +R +V Q D ++ T+ ++A G
Sbjct: 505 STLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ--DPRLFYGTLRDNIALG 562
Query: 125 LGNLNLTHDEVRSKVAKALDAVGMSNYLQR-------PV----QTLSGGQKQRVAIAGAL 173
+ DE + +A + G++ +++R + ++LSGGQ+Q VA+A AL
Sbjct: 563 APYAD---DEE---ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL 616
Query: 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233
+LLLDE T+ +D + + +K L T + VTHR L+ D M+
Sbjct: 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK---TLVLVTHRTSLLDLVDRIIVMD 673
Query: 234 DGKIVMQADG 243
+G+IV ADG
Sbjct: 674 NGRIV--ADG 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-26
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 25/193 (12%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------- 97
V L D S + G+ L GP+G GK+TLLK+L G L P+ G V +
Sbjct: 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74
Query: 98 ---KRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
+R VFQ D +++ TV +VA L E++ +V AL VG+ +
Sbjct: 75 PLLRRRIGVVFQ--DFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD 132
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK--NLLGDSGEV 211
+ LSGG++QRVAIA A+ + +LL DE T LD +++ +K N G
Sbjct: 133 AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG----T 188
Query: 212 TALWVTHRLEELE 224
T + TH L ++
Sbjct: 189 TVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-26
Identities = 78/234 (33%), Positives = 110/234 (47%), Gaps = 40/234 (17%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-------------VKR 99
+ + + +P G ++GPNGCGKSTLL+ L+ L+ P +GHV+ V R
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 100 PKSFVFQNPDHQVVMP---TVEADVAFGLGNLNLTHD--------EVRSKVAKALDAVGM 148
+ QN P TV+ VA G H E V KA+ A G+
Sbjct: 82 RIGLLAQN----ATTPGDITVQELVARG----RYPHQPLFTRWRKEDEEAVTKAMQATGI 133
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
++ + V TLSGGQ+QR IA LA+ ++LLDE TT+LD S Q ++E + L +
Sbjct: 134 THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK 193
Query: 209 GEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERI 261
G A V H L + YA + +GKIV Q I+ + IERI
Sbjct: 194 GYTLAA-VLHDLNQACRYASHLIALREGKIVAQGAPKEIVT------AELIERI 240
|
Length = 265 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-26
Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 25/226 (11%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-------- 96
KQR P+L + S S+ G+ LLG +GCGKSTL ++L GL KP G V
Sbjct: 20 AKQRA--PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77
Query: 97 --------VKRPKSFVFQNPDHQVVMP--TVEADVAFGLGNL-NLTHDEVRSKVAKALDA 145
+R VFQ+ V P TV + L +L +L E ++++A+ LD
Sbjct: 78 LDRKQRRAFRRDVQLVFQD-SPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDM 136
Query: 146 VGM-SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
VG+ S + + LSGGQ QR+ IA ALA K+++LDE + LD Q ++E ++ L
Sbjct: 137 VGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 205 LGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIVMQADGVSILNF 249
G L++TH L ++ M+ G+IV + D +L+F
Sbjct: 197 QQAFG-TAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF 241
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-26
Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RPKSFV----- 104
L+D SF VP G+ L+G NG GKSTLL++LAG+ P +G V V+ R S +
Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGG 94
Query: 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164
F T ++ L L+ E+ K+ + ++ + +++ PV+T S G K
Sbjct: 95 FNP------ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMK 148
Query: 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL- 223
R+A A A A +LL+DE+ D + Q ++ LL T + V+H +
Sbjct: 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL--KQGKTVILVSHDPSSIK 206
Query: 224 EYADGAFYMEDGKIVM 239
D A +E GKI
Sbjct: 207 RLCDRALVLEKGKIRF 222
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-26
Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 24/243 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ +NY+ L D V G L+G G GKSTLL+ L GLL+PT G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 94 HVY-----------------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR 136
V V++ VFQ P+ Q+ TV DVAFG N + ++
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 137 SKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195
A+ L+ VG+++ + ++ LSGGQ +RVAIAG LA +VL+LDE T LD +
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181
Query: 196 GVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV---MQADGVSILNFIK 251
+++ ++ + SG+ L VTH ++++ +YAD + +E G I+ +D ++F+K
Sbjct: 182 EMMQLFES-IHQSGQTVVL-VTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLK 239
Query: 252 SRQ 254
+ +
Sbjct: 240 AHE 242
|
Length = 288 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-26
Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 23/205 (11%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RPKSFVFQN-- 107
V L D SFSV G+++ LLGPNG GK+T ++++ G++ P +G V +P +N
Sbjct: 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI 72
Query: 108 ----------PDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPV 156
P +V+ D L L L +E R ++ + L+ + +S Y + V
Sbjct: 73 GYLPEERGLYPKMKVI------DQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV 126
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
+ LS G +Q+V A+ ++L+LDE + LD + +++ V L +G T +
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV-ELLKDVIRELARAG-KTVILS 184
Query: 217 THRLEELE-YADGAFYMEDGKIVMQ 240
TH++E +E D + G+ V+
Sbjct: 185 THQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-26
Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 22/202 (10%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------RPK--- 101
IL + S SV +G+ + GP+GCGKSTLLK++A L+ PT+G + + +P+
Sbjct: 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR 76
Query: 102 ---SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA-VGMSNY-LQRPV 156
S+ Q P + TVE ++ F + + A L A + + L + +
Sbjct: 77 QQVSYCAQTPA--LFGDTVEDNLIF---PWQIRNRRPDRAAALDLLARFALPDSILTKNI 131
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
LSGG+KQR+A+ L K+LLLDE+T+ LDES++ + E + + + V LW+
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ-NVAVLWI 190
Query: 217 TH-RLEELEYADGAFYMEDGKI 237
TH + + + +AD ++ G
Sbjct: 191 THDKDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-26
Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 33/247 (13%)
Query: 13 LLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGP 72
LL + ++ +IE N+++S K+ P+L+D SFS+ G+ ++GP
Sbjct: 308 LLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK----PVLKDISFSIEPGEKVAIVGP 363
Query: 73 NGCGKSTLLKVLAGLLKPTNGHVYVK------------RPK-SFVFQNPDHQVVMP-TVE 118
+G GKSTL+K+L L PT+G + + R + V Q+P ++ T+
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP---LLFSGTIR 420
Query: 119 ADVAFGLGNLNLTHDEVRS--KVAKALDAV-GMSNYLQRPVQ----TLSGGQKQRVAIAG 171
++A G + T +E+ K+A A + + + + V LSGGQ+QR+AIA
Sbjct: 421 ENIAL--GRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478
Query: 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFY 231
AL +L+LDE T+ LD + + +A+K LL T L + HRL ++ AD
Sbjct: 479 ALLRNPPILILDEATSALDTETEALIQDALKKLLKGR---TTLIIAHRLSTIKNADRIIV 535
Query: 232 MEDGKIV 238
+++G+IV
Sbjct: 536 LDNGRIV 542
|
Length = 567 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 6e-26
Identities = 68/209 (32%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------- 97
+ +K V + SF+V G++ LLGPNG GK+T L++LAGLL+P G V
Sbjct: 12 RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK 71
Query: 98 -----KRPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN 150
+R FV D + T ++ + G L DE+ +++ + D +GM
Sbjct: 72 EPAEARRRLGFV---SDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE 128
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210
L R V S G +Q+VAIA AL VLLLDE TT LD + E ++ L +
Sbjct: 129 LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL--RALG 186
Query: 211 VTALWVTHRLEELE-YADGAFYMEDGKIV 238
L+ TH ++E+E D + G++V
Sbjct: 187 KCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 8e-26
Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVFQ 106
+V G++ ++GP+G GKSTLL ++AG ++P +G + V +RP S +FQ
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 107 NPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165
++ TV ++ GL L L ++ + KV A VG+++YL R + LSGGQ+Q
Sbjct: 78 E-NNLFAHLTVRQNIGLGLHPGLKLNAEQ-QEKVVDAAQQVGIADYLDRLPEQLSGGQRQ 135
Query: 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E 224
RVA+A L +LLLDE + LD + ++ VK L + T L VTH L +
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ-LCSERQRTLLMVTHHLSDARA 194
Query: 225 YADGAFYMEDGKIVMQADG 243
A + GKI + +D
Sbjct: 195 IASQIAVVSQGKIKVVSDC 213
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-25
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 22/233 (9%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---- 97
+TK V +RD SF G++ LLG NG GK+TLL+++A LL P +G V +
Sbjct: 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65
Query: 98 -KRPKSFVFQNPDHQVVMP---------TVEADVAFGLGNLN-LTHDEVRSKVAKALDAV 146
R SFV + V+ T ++ + LN L+ E+++++A+ +
Sbjct: 66 TVRDPSFVRR---KIGVLFGERGLYARLTARENLKY-FARLNGLSRKEIKARIAELSKRL 121
Query: 147 GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
+ YL R V S G KQ+VAIA AL +L+LDE T+ LD + + +K L
Sbjct: 122 QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ-LK 180
Query: 207 DSGEVTALWVTHRLEELEY-ADGAFYMEDGKIVMQADGVSILNFIKSRQSSYI 258
+ G ++ +H ++E+E D + G++V++ ++ R I
Sbjct: 181 NEGRAV-IFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEI 232
|
Length = 245 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 22/193 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--KRPKSFVFQNPD 109
IL D S+ V G+ W ++GPNG GK+TLL +L G P++G V + +R +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK-GETIFE 103
Query: 110 ------------HQVVMP--TVEADVAFG----LGNLNLTHDEVR-SKVAKALDAVGMSN 150
H+ TV V G +G + L+ +G +
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210
RP +LS G+++RV IA AL + ++L+LDE LD + ++ ++ L G
Sbjct: 164 LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGA 223
Query: 211 VTALWVTHRLEEL 223
L+VTH EE+
Sbjct: 224 PALLFVTHHAEEI 236
|
Length = 257 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-25
Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 22/207 (10%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-----------------Y 96
+ D + G+ + ++G G GKSTL++ + LLKPT G V
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 97 VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL--QR 154
V++ VFQ P+ Q+ TVE ++ FG N + DEV++ + L +G S + Q
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
P Q +SGGQ +++AI LA +++LDE T LD + V+ +K+L D + T +
Sbjct: 143 PFQ-MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK-TII 200
Query: 215 WVTHRLEEL-EYADGAFYMEDGKIVMQ 240
V+H + E+ YAD M++G IV Q
Sbjct: 201 LVSHDMNEVARYADEVIVMKEGSIVSQ 227
|
Length = 286 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-25
Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 45/247 (18%)
Query: 38 NLN-YSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96
NL+ T V + SF + G++ ++G +G GKS L K + GLL N +
Sbjct: 6 NLSVSFPTDAGV--VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIV 63
Query: 97 -----------VKRPK-----------SFVFQNPDHQVVM----P--TVEADVAFGL--G 126
+ + + +FQ+P M P T+ +A L
Sbjct: 64 GGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-----MTSLNPVMTIGDQIAEVLRLH 118
Query: 127 NLNLTHDEVRSKVAKALDAVGMSNYLQR----PVQTLSGGQKQRVAIAGALAEACKVLLL 182
L+ E + + + L+ VG+ + +R P + LSGG +QRV IA ALA K+L+
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE-LSGGMRQRVMIAMALALNPKLLIA 177
Query: 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241
DE TT LD + Q +++ +K L + G + +TH L + E AD M G+IV +
Sbjct: 178 DEPTTALDVTVQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEG 236
Query: 242 DGVSILN 248
I
Sbjct: 237 PVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 3e-25
Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 51/229 (22%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KR 99
IL S +VP G++ LLG NG GK+TLLK + GLL P +G + +R
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72
Query: 100 PK---SFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY--- 151
+ +V + + P TVE ++ G R+K L+ V Y
Sbjct: 73 ARAGIGYVPEGRR---IFPELTVEENLLLGAYARR------RAKRKARLERV----YELF 119
Query: 152 ------LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT-----TFLDESDQFGVIEA 200
++ TLSGG++Q +AIA AL K+LLLDE + ++E + EA
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE-----IFEA 174
Query: 201 VKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
++ L D G VT L V LE AD A+ +E G++V++ +L
Sbjct: 175 IRE-LRDEG-VTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 6e-25
Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRP---KSFVF 105
L+ + ++ G+ L+G +GCGKSTLL +++GL +PT+G V + P + VF
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 106 QNPDHQVVMP--TVEADVAFGLGNLN--LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSG 161
QN ++P TV ++A + + L+ E R+ V + + VG++ + LSG
Sbjct: 61 QN---YSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSG 117
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221
G KQRVAIA AL+ KVLLLDE LD + + E + + + VT L VTH ++
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR-VTVLMVTHDVD 176
Query: 222 ELEYADGAFYMEDGKIVMQADG 243
E A + D ++VM +G
Sbjct: 177 E------ALLLSD-RVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-24
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 37/214 (17%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RPKSFVFQNPDH 110
P+L+D SF++P+G+ ++GP+G GKST+L++L ++G + + + V +
Sbjct: 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLR 74
Query: 111 QV--VMP--------TVEADVAFGLGNLNLTHDEVRSKVAKALD--------------AV 146
+ V+P T+ ++ +G + T +EV + AKA V
Sbjct: 75 RAIGVVPQDTVLFNDTIGYNIRYG--RPDATDEEVI-EAAKAAQIHDKIMRFPDGYDTIV 131
Query: 147 GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
G +R ++ LSGG+KQRVAIA A+ + +LLLDE T+ LD + + A++++
Sbjct: 132 G-----ERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK 185
Query: 207 DSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
T + + HRL + AD ++DG+IV +
Sbjct: 186 GR---TTIVIAHRLSTIVNADKIIVLKDGRIVER 216
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-24
Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 32/230 (13%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE N++ + R + L + S +P+G+++ ++G +G GKSTL++ + L +PT+G
Sbjct: 2 IELKNISKVFPQGGRT-IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60
Query: 94 HVYV----------------KRPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEV 135
V V +R +FQ H ++ TV +VA L E+
Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQ---HFNLLSSRTVFDNVALPLELAGTPKAEI 117
Query: 136 RSKVAKALDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
+++V + L+ VG+S+ R P Q LSGGQKQRVAIA ALA KVLL DE T+ LD +
Sbjct: 118 KARVTELLELVGLSDKADRYPAQ-LSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 195 FGVIEAVKNL---LGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQ 240
++E +K++ LG +T + +TH ++ + D ++ G++V Q
Sbjct: 177 RSILELLKDINRELG----LTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222
|
Length = 343 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-24
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 29/213 (13%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RPKSF--------- 103
D S SV G++ LLG NG GKSTL+K+L GL +P +G + V +
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 104 ----VFQNPDHQVVMP--TVEADVAFGLG---NLNLTHDEVRSKVAKALDAVGMSNYLQR 154
V Q H +++P TV ++ GL + + R+++ + + G+
Sbjct: 80 GIGMVHQ---HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDA 136
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL--DESDQFGVIEAVKNLLGDSGEVT 212
V LS G++QRV I AL ++L+LDE T L E+D+ I ++ L G T
Sbjct: 137 KVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI--LRR-LAAEG-KT 192
Query: 213 ALWVTHRLEE-LEYADGAFYMEDGKIVMQADGV 244
+++TH+L+E + AD + GK+V D V
Sbjct: 193 IIFITHKLKEVMAIADRVTVLRRGKVVGTVDPV 225
|
Length = 501 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 3e-24
Identities = 74/241 (30%), Positives = 106/241 (43%), Gaps = 35/241 (14%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
++I+ + +N Q L D + P G+ +LLGP+G GKS+LL+VL L P
Sbjct: 1 MSIQLNGINCFYGAHQ-----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR 55
Query: 92 NGHVYV-------------------KRPKSFVFQN----PDHQVVMPTVEADVAFGLGNL 128
+G + + +R VFQ P V +EA L
Sbjct: 56 SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRV----L 111
Query: 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
L+ D+ ++ K L + + Y R LSGGQ+QRVAIA AL +VLL DE T
Sbjct: 112 GLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADGVSIL 247
LD ++ +K L +T + VTH +E + A YME+G IV Q D
Sbjct: 172 LDPEITAQIVSIIKELAETG--ITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229
Query: 248 N 248
Sbjct: 230 E 230
|
Length = 242 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 3e-24
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 24/226 (10%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---- 97
++TK+ + + + + G+ +L+GP+G GK+T +K++ L++PT+G +++
Sbjct: 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED 64
Query: 98 ---------KRPKSFVFQNPDHQV-VMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDA 145
+R +V Q Q+ + P TVE ++A L +++R + + L
Sbjct: 65 IREQDPVELRRKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLAL 120
Query: 146 VGM--SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203
VG+ + + R LSGGQ+QRV +A ALA +LL+DE LD + + E K
Sbjct: 121 VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR 180
Query: 204 LLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
L + G+ T ++VTH ++E AD M++G+IV IL
Sbjct: 181 LQQELGK-TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 4e-24
Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 21/221 (9%)
Query: 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
N++Y+ KK L + S + ++ ++G G GKST++++ GL+ G V
Sbjct: 11 NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70
Query: 98 ------------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139
++ VFQ P++Q+ T+E D+AFG NL E KV
Sbjct: 71 GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV 130
Query: 140 AKALDAVGM-SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
+ L V + +Y++R LSGGQK+RVA+AG +A L+LDE T LD + I
Sbjct: 131 PELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI 190
Query: 199 EAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIV 238
+ L + + + VTH +++ L AD M +GK++
Sbjct: 191 NLFERLNKEYKK-RIIMVTHNMDQVLRIADEVIVMHEGKVI 230
|
Length = 289 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-24
Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 31/219 (14%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY---------------- 96
L++ + ++ G+ ++GP+G GKSTLL+ + L++P++G +
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76
Query: 97 VKRPKSFVFQNPDHQVVMP-TVEADVAFG-LGN-------LNLTHDEVRSKVAKALDAVG 147
++R +FQ + ++ TV +V G LG L +E + + AL+ VG
Sbjct: 77 LRRRIGMIFQ--HYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG 134
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+++ + LSGGQ+QRVAIA ALA+ ++L DE LD V++ +K + +
Sbjct: 135 LADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE 194
Query: 208 SGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADGVS 245
G +T + H+++ +YAD ++ G+IV DG
Sbjct: 195 DG-ITVIINLHQVDLAKKYADRIVGLKAGEIVF--DGAP 230
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-24
Identities = 67/217 (30%), Positives = 103/217 (47%), Gaps = 28/217 (12%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------KRPK---- 101
L S + G ++G NG GKSTLL +AG LKPT+G + + K+
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 102 ---SFVFQNP-DHQVVMPTVEADVA--------FGLG-NLNLTH-DEVRSKVAKALDAVG 147
+ VFQ+P T+E ++A GL LN R ++A+ +G
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL--GLG 137
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ N L + LSGGQ+Q +++ A K+LLLDE T LD V+E ++ +
Sbjct: 138 LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE 197
Query: 208 SGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADG 243
++T L VTH +E+ L+Y + + GKIV+ G
Sbjct: 198 -HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTG 233
|
Length = 263 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 4e-24
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112
IL VP G++ +LG +G GKSTLL+++ GLL+P G + + +
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82
Query: 113 VMP---------------TVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS-NYLQRP 155
+ TV +VAF L L +R V L+ VG+
Sbjct: 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY 142
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215
LSGG ++RVA+A A+A ++L LDE T+ LD GVI+ + L D+ +T +
Sbjct: 143 PSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISA-GVIDELIRELNDALGLTVIM 201
Query: 216 VTHRLEEL-EYADGAFYMEDGKIVMQA 241
VTH L+ L AD + DGK++ +
Sbjct: 202 VTHDLDSLLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 7e-24
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------KRPK 101
+ +F V G+++ LGPNG GK+T +++L LL+PT+G V +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI 68
Query: 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSG 161
V Q + E G L DE + + L+ + RPV T SG
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMG-RLYGLPKDEAEERAEELLELFELGEAADRPVGTYSG 127
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221
G ++R+ IA +L VL LDE TT LD + + + ++ L + VT L TH +E
Sbjct: 128 GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEG--VTILLTTHYME 185
Query: 222 ELE-YADGAFYMEDGKIV 238
E + D ++ G+I+
Sbjct: 186 EADKLCDRIAIIDHGRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 7e-24
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 21/199 (10%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---- 97
S+ K++ + V L+ SF++ G++ +GPNG GK+T LK+L+GLL+PT+G V V
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 98 --KRPKSFVFQNPDHQVVM----------PTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145
KR K F+ + VV P +++ +L + ++ + +
Sbjct: 85 PWKRRKKFLRR---IGVVFGQKTQLWWDLPVIDS-FYLLAAIYDLPPARFKKRLDELSEL 140
Query: 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205
+ + L PV+ LS GQ+ R IA AL ++L LDE T LD Q + +K
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 206 GDSGEVTALWVTHRLEELE 224
+ G T L +H ++++E
Sbjct: 201 RERG-TTVLLTSHYMKDIE 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-24
Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 34/234 (14%)
Query: 27 GIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86
G SG AIE + + IL D S + G+ ++GP+G GKSTLL++L G
Sbjct: 446 GKLSG-AIEVDRVTFRYRPDGP---LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501
Query: 87 LLKPTNGHVY-------------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD 133
P +G V+ V+R V QN +++ ++ ++A G LT D
Sbjct: 502 FETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG--RLMSGSIFENIA---GGAPLTLD 556
Query: 134 EV-----RSKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186
E + +A+ + A+ GM + TLSGGQ+QR+ IA AL ++LL DE T
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT 616
Query: 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
+ LD Q V E+++ L +VT + + HRL + AD + ++ G++V Q
Sbjct: 617 SALDNRTQAIVSESLERL-----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 8e-24
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 45/222 (20%)
Query: 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
+ +++ +++ L+D + VP G+L ++GP G GKS+LL L G L+ +G V V
Sbjct: 5 DASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV 64
Query: 98 KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
++V Q P Q T+ ++ FG DE R + K + A L+ ++
Sbjct: 65 PGSIAYVSQEPWIQ--NGTIRENILFG-----KPFDEERYE--KVIKACA----LEPDLE 111
Query: 158 ---------------TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-- 200
LSGGQKQR+++A A+ + LLD D ++A
Sbjct: 112 ILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD---------DPLSAVDAHV 162
Query: 201 ----VKNLLGD--SGEVTALWVTHRLEELEYADGAFYMEDGK 236
+N + T + VTH+L+ L +AD +++G+
Sbjct: 163 GRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-23
Identities = 65/228 (28%), Positives = 111/228 (48%), Gaps = 33/228 (14%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE N+N+S +K P+L+D +FS+ G+ ++GP G GK+TL+ +L P G
Sbjct: 3 IEFENVNFSYDEK----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 94 HVYV------KRPKS-------FVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVR--S 137
+ + + V Q+ + T+ ++ LG N T +EV +
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDT---FLFSGTIMENIR--LGRPNATDEEVIEAA 113
Query: 138 KVAKALDAV-----GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192
K A A D + G L LS G++Q +AIA A+ K+L+LDE T+ +D
Sbjct: 114 KEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173
Query: 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
+ + EA++ L+ T++ + HRL ++ AD ++DGKI+ +
Sbjct: 174 TEKLIQEALEKLMKGR---TSIIIAHRLSTIKNADKILVLDDGKIIEE 218
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-23
Identities = 64/200 (32%), Positives = 95/200 (47%), Gaps = 35/200 (17%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------K 98
P LR SF+VP G+ L+GP+G GKSTLL +L G + PT G + V +
Sbjct: 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
Query: 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ-RPVQ 157
++V Q+P + T+ ++ D +++ +AL+ G+ ++ P
Sbjct: 396 DQIAWVPQHP--FLFAGTIAENIRLARP------DASDAEIREALERAGLDEFVAALPQG 447
Query: 158 T----------LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
LSGGQ QR+A+A A +LLLDE T LD + V+EA++ L
Sbjct: 448 LDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRAL--- 504
Query: 208 SGEVTALWVTHRLEELEYAD 227
+ T L VTHRL AD
Sbjct: 505 AQGRTVLLVTHRLALAALAD 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-23
Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 22/216 (10%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
++ ++L + KK+ +L D S V G+++ LGPNG GK+T +K++ GL+KP +G
Sbjct: 1 LKTNDLTKTYGKKR-----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFG-------LGNLNLTHDEVRSKVAKALDAV 146
+ KS+ + + +EA + L L + ++ + LD V
Sbjct: 56 EITFDG-KSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV 114
Query: 147 GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL-- 204
G+ + ++ V+ S G KQR+ IA AL +L+LDE T LD G+ E ++ L
Sbjct: 115 GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP---DGIKE-LRELIL 170
Query: 205 -LGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV 238
L D G +T L +H L E++ AD + GK++
Sbjct: 171 SLRDQG-ITVLISSHLLSEIQKVADRIGIINKGKLI 205
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 1e-23
Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 19/204 (9%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RP-KSFVFQNP 108
+L SV G L L+GPNG GK+TLL+ + G L PT G V V ++ +
Sbjct: 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75
Query: 109 DHQVVMPTVEADVAFG--------------LGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
+V + ++F + + R+ V +A++ G++ + R
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR 135
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
PV +LSGG++QRV +A ALA+A VLLLDE T LD + Q +E V+ L+ D G+ TA+
Sbjct: 136 PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV-DDGK-TAV 193
Query: 215 WVTHRLE-ELEYADGAFYMEDGKI 237
H L+ Y D + DG++
Sbjct: 194 AAIHDLDLAARYCDELVLLADGRV 217
|
Length = 402 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 1e-23
Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ SN+ + + + L + S VP+GQ++ ++G +G GKSTL++ + L +PT+G
Sbjct: 2 IKLSNITKVFHQGTKTIQA-LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 94 HVYVKRPKSFVFQNPD-----HQVVM----------PTVEADVAFGLGNLNLTHDEVRSK 138
V V N + Q+ M TV +VA L N DE++ K
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK 120
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
V + L VG+ + LSGGQKQRVAIA ALA KVLL DE T+ LD + ++
Sbjct: 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180
Query: 199 EAVKNLLGDSGEVTALWVTHRLE 221
E +K + G +T L +TH ++
Sbjct: 181 ELLKEINRRLG-LTILLITHEMD 202
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 2e-23
Identities = 67/243 (27%), Positives = 102/243 (41%), Gaps = 42/243 (17%)
Query: 31 GVAIECSNL--NYSITKK--------------QRKLVPILRDCSFSVPSGQLWMLLGPNG 74
I NL NY + K + + + ++D SF +P G++ LG NG
Sbjct: 1 MAMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANG 60
Query: 75 CGKSTLLKVLAGLLKPTNGHVYV--KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132
GKST LK+L GLL PT+G V V K P F+ + + + L
Sbjct: 61 AGKSTTLKMLTGLLLPTSGKVRVNGKDP----FRRREEYLRSIGLVMGQKLQLWWDLPAL 116
Query: 133 DEVRSKVAKALDAVGMSNYLQR----------------PVQTLSGGQKQRVAIAGALAEA 176
D + V K + + + +R PV+ LS GQ+ R +A AL
Sbjct: 117 DSLE--VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHP 174
Query: 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDG 235
KVL LDE T LD + Q + E +K + + T L TH +++ D ++ G
Sbjct: 175 PKVLFLDEPTVGLDVNAQANIREFLKE-YNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233
Query: 236 KIV 238
++V
Sbjct: 234 QLV 236
|
Length = 325 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 2e-23
Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 46/224 (20%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------RPKSFV-- 104
+ D S V G++ L+GPNG GK+TL ++ G KP++G V + P
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 105 -----FQNP---DHQVVMPTVEA--------DVAFGLGNLNLTHDEVRSKVAKALDAVGM 148
FQ V+ V G E R + + L+ VG+
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL--DESDQFGVIEAVKNLLG 206
RP LS GQ++R+ IA ALA K+LLLDE L +E+++ + E ++ L
Sbjct: 140 GELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEE--LAELIRE-LR 196
Query: 207 DSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ-ADGVSILNF 249
D G VT L + H + K+VM AD + +LN+
Sbjct: 197 DRGGVTILLIEHDM---------------KLVMGLADRIVVLNY 225
|
Length = 250 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 3e-23
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY----------------V 97
+ D ++ G++++++G +G GKST +++L L++PT G ++ V
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 98 KRPK-SFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
+R K VFQ + P T+ + + G L E + K + L VG+ Y R
Sbjct: 69 RRKKIGMVFQQ---FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR 125
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
LSGG +QRV +A ALA +LL+DE + LD + + + +K L + T +
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK-TIV 184
Query: 215 WVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
++TH L+E + D M+ G+IV IL
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 3e-23
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG------ 93
N + R +L+D SF++ G++ L+GP+G GKST++ +L +P G
Sbjct: 16 NVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG 75
Query: 94 -------HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV 146
H Y+ S V Q P + +++ ++A+GL + + + V+ KA A
Sbjct: 76 KPISQYEHKYLHSKVSLVGQEP--VLFARSLQDNIAYGLQSCSF--ECVKEAAQKA-HAH 130
Query: 147 GMSNYLQRPVQT--------LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
+ L T LSGGQKQRVAIA AL +VL+LDE T+ LD + V
Sbjct: 131 SFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190
Query: 199 EAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+A+ T L + HRL +E AD ++ G+I
Sbjct: 191 QALY---DWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-23
Identities = 74/237 (31%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+I+ + +N Q L D + P G+ +LLGP+G GKS+LL+VL L P +
Sbjct: 2 SIQLNGINCFYGAHQ-----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS 56
Query: 93 GHVYV-------------------KRPKSFVFQN----PDHQVVMPTVEADVAFGLGNLN 129
G + + +R VFQ P V +EA L
Sbjct: 57 GTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRV----LG 112
Query: 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189
L+ D+ ++ K L+ + + Y R LSGGQ+QRVAIA AL +VLL DE T L
Sbjct: 113 LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
Query: 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGA----FYMEDGKIVMQAD 242
D ++ ++ L +T + VTH E+E A YME+G IV Q D
Sbjct: 173 DPEITAQIVSIIRELAETG--ITQVIVTH---EVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 4e-23
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 40/212 (18%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ +N+++S ++++ +L++ S + G+ LLG +G GKSTLL++L G LKP G
Sbjct: 1 LSINNVSFSYPEQEQ---QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG 57
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAVGM 148
+ + ++ + S ++ L +
Sbjct: 58 EITLDGV--------------------------PVSDLEKALSSLISVLNQRPYLFDTTL 91
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
N L R SGG++QR+A+A L + ++LLDE T LD + ++ + +L D
Sbjct: 92 RNNLGRR---FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK 148
Query: 209 GEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
T +W+TH L +E+ D ++E+GKI+MQ
Sbjct: 149 ---TLIWITHHLTGIEHMDKILFLENGKIIMQ 177
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 4e-23
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 20/149 (13%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--KR-----PK-- 101
+++ V G+ +L+GP+GCGKSTLL+++AGL + T+G +++ + P
Sbjct: 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADR 76
Query: 102 --SFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP 155
+ VFQN P H M +V ++A+GL + E+ +VA+A + + L R
Sbjct: 77 DIAMVFQNYALYP-H---M-SVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRK 131
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDE 184
+ LSGGQ+QRVA+ A+ V L DE
Sbjct: 132 PRELSGGQRQRVAMGRAIVREPAVFLFDE 160
|
Length = 356 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 5e-23
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 33/221 (14%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-------------- 96
+ LR S V G++ LLG NG GK+TLLK + GL++P +G +
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75
Query: 97 VKRPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAV-GMSNYLQ 153
+ ++V + + P TVE ++ G + + + + +
Sbjct: 76 ARLGIAYVPEGRR---IFPRLTVEENLLLGAYARRDKEAQ-ERDLEEVYELFPRLKERRN 131
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELT-----TFLDESDQFGVIEAVKNLLGDS 208
+ TLSGG++Q +AIA AL K+LLLDE + ++E + EA+K L
Sbjct: 132 QRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE-----IFEAIKE-LRKE 185
Query: 209 GEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
G +T L V LE AD + +E+G+IV+ +L
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 5e-23
Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 20/225 (8%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE +L+ ++ + + +L IL+ V G+ ++GP+G GKSTLL VLAGL P++G
Sbjct: 7 IEVHHLSKTVGQGEGEL-SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65
Query: 94 HVYV-----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR 136
V + R FVFQ+ H + T +VA L + + R
Sbjct: 66 EVRLLGQPLHKLDEDARAALRARHVGFVFQS-FHLIPNLTALENVALPLELRGESSADSR 124
Query: 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196
+ L+AVG+ L LSGG++QRVA+A A A VL DE T LD +
Sbjct: 125 AGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 197 VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241
+ + + L + G T + VTH + D + G++V A
Sbjct: 185 IADLLFALNRERG-TTLVLVTHDPQLAARCDRQLRLRSGRLVEDA 228
|
Length = 228 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 6e-23
Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I NL+ + + P+L + S ++ G+ L+G NG GKSTLLK+LAG L+P +G
Sbjct: 4 ITLENLSLAYGDR-----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG 58
Query: 94 HVYVKRPKSF------VFQNPDHQVV----------------MPTVEADVAFGLGNL--- 128
V + +P+ V+ + A +A L
Sbjct: 59 EVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 129 ------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182
L + ++ +AL +G + RPV +LSGG ++RVA+A AL E +LLL
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 183 DELTTFLD 190
DE T LD
Sbjct: 178 DEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 8e-23
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY--------VKRPKSFV 104
+L +P+GQ ++G +GCGKSTLL++LAGL P+ G + + +
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86
Query: 105 FQNPDHQVVMP--TVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSG 161
FQ+ ++P V +V GL G R +AL AVG+++ LSG
Sbjct: 87 FQDAR---LLPWKKVIDNVGLGLKGQW-------RDAALQALAAVGLADRANEWPAALSG 136
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221
GQKQRVA+A AL +LLLDE LD + + + +++L G T L VTH +
Sbjct: 137 GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVS 195
Query: 222 E-LEYADGAFYMEDGKI 237
E + AD +E+GKI
Sbjct: 196 EAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 9e-23
Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------------K 98
D F++P + + G +G GK+TL++++AGL +P G + + K
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 99 RPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
R +VFQ + P +V ++ +G+ E R + ++ +G+ + L R
Sbjct: 75 RRIGYVFQEAR---LFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLP 129
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
LSGG+KQRVAI AL + ++LL+DE LD+ ++ ++ ++ L + L+V
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER-LHAEFGIPILYV 188
Query: 217 THRLEELEY-ADGAFYMEDGKIV-------MQADGVSILNFIKSRQSSYI 258
+H L+E+ AD +EDG++ + A L ++ +
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD--LPWLAREDQGSL 236
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 9e-23
Identities = 79/220 (35%), Positives = 111/220 (50%), Gaps = 35/220 (15%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-YVKRP--- 100
K Q + V L + S S+ SG+ LLG +GCGKSTL ++L GL P+ G+V + P
Sbjct: 21 KHQHQTV--LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78
Query: 101 ------KSF------VFQ------NPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAK 141
K+F VFQ NP TV + L +L +L E ++ ++
Sbjct: 79 LNRAQRKAFRRDIQMVFQDSISAVNPRK-----TVREIIREPLRHLLSLDKAERLARASE 133
Query: 142 ALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
L AV + + L + LSGGQ QRV +A ALA K+L+LDE + LD Q GVI
Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 201 VKNLLGDSGEVTA-LWVTHRLEELEY-ADGAFYMEDGKIV 238
+K L G TA L++TH L +E M++G+IV
Sbjct: 194 LKKLQQQFG--TACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
Length = 268 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-22
Identities = 63/197 (31%), Positives = 90/197 (45%), Gaps = 36/197 (18%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E N++ + +L+D SF + G ++GPNG GKSTLLK+LAG L P +G
Sbjct: 322 LEFENVSKGYDGGR----LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
V V + H+ + + + T E S+ D + YL
Sbjct: 378 TVKV-GETVKIGYFDQHRDEL------------DPDKTVLEELSEGFPDGDEQEVRAYLG 424
Query: 154 R----------PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVK 202
R PV LSGG+K R+ +A L + +LLLDE T LD ES +EA++
Sbjct: 425 RFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES-----LEALE 479
Query: 203 NLLGD-SGEVTALWVTH 218
L D G T L V+H
Sbjct: 480 EALLDFEG--TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 2e-22
Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 37/261 (14%)
Query: 2 RLVRSFTVTPHLLSPPHSIH-PSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFS 60
RL+ P + +P H P + G + E N Y R P L + +
Sbjct: 310 RLIELLQAEPDIKAPAHPKTLPVPLRG---EIEFEQVNFAYP----ARPDQPALDGLNLT 362
Query: 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------RPKSF------VFQN 107
V G+ L+GP+G GKSTL ++L P +G + + P V Q+
Sbjct: 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQD 422
Query: 108 PDHQVVMPTVEADVAFGLGNLNLTHDEVR--SKVAKALDAV-----GMSNYLQRPVQTLS 160
P + +V ++ +G + T +EV ++ A A + + G YL TLS
Sbjct: 423 P--VLFAASVMENIRYG--RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478
Query: 161 GGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHR 219
GGQ+QR+AIA A+ + +LLLDE T+ LD ES+Q V +A++ L+ T L + HR
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQL-VQQALETLMKGR---TTLIIAHR 534
Query: 220 LEELEYADGAFYMEDGKIVMQ 240
L + AD M+ G+IV Q
Sbjct: 535 LATVLKADRIVVMDQGRIVAQ 555
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-22
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVFQ 106
+V G+ +LGP+G GKSTLL ++AG L P +G + + +RP S +FQ
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 107 NPD---HQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQR-PVQTLSG 161
+ H TV ++ GL L L + R K+ +G+ + L R P Q LSG
Sbjct: 79 ENNLFSHL----TVAQNIGLGLNPGLKLNAAQ-REKLHAIARQMGIEDLLARLPGQ-LSG 132
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221
GQ+QRVA+A L +LLLDE + LD + + ++ V + ++T L V+H LE
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC-QERQLTLLMVSHSLE 191
Query: 222 E-LEYADGAFYMEDGKIVMQADGVSILN 248
+ A + + DG+I +L+
Sbjct: 192 DAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-22
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 24/216 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------K 98
+ D + ++ G+ +L+GP+G GK+T LK++ L++PT+G + + +
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74
Query: 99 RPKSFVFQNPDHQV-VMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM--SNYLQ 153
R +V Q Q+ + P TV ++A L + ++ + + LD VG+ S Y
Sbjct: 75 RKIGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYAD 130
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213
R LSGGQ+QRV +A ALA +LL+DE LD + + E +K L + G T
Sbjct: 131 RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG-KTI 189
Query: 214 LWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
++VTH ++E L+ AD M+ G+IV IL
Sbjct: 190 VFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
|
Length = 309 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 3e-22
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 38/231 (16%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
++C NL ++ + +L+ S S+ G++ ++G +G GKSTLL +L GL PT+G
Sbjct: 2 LKCENLGKRY-QEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 94 HVYVK---------------RPKS--FVFQN----PD----HQVVMPTVEADVAFGLGNL 128
V R K F++Q PD V MP + +G
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL-------IGKK 113
Query: 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
++ + R+ + L+ VG+ + + LSGG++QRVAIA AL ++L DE T
Sbjct: 114 SVKEAKERAY--EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGN 171
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTA-LWVTHRLEELEYADGAFYMEDGKIV 238
LD ++ + + + L + T+ L VTH LE + D M+DG++
Sbjct: 172 LDNNNAKIIFDLMLELNRELN--TSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 3e-22
Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 27/225 (12%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I N++ S K +L D S +P G + ++GPNG GKSTLL +++ LLK +G
Sbjct: 2 ITIENVSKSYGTK-----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG 56
Query: 94 HVYVKR------------PKSFVFQNPDHQVVMPTVEADVAFGL-----GNLNLTHDEVR 136
+ + K + + +H TV V FG G L E R
Sbjct: 57 EITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLT---KEDR 113
Query: 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196
+ +A++ + + + R + LSGGQ+QR IA LA+ +LLDE LD
Sbjct: 114 RIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173
Query: 197 VIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ 240
+++ ++ L + G+ + V H + Y+D +++GK+V Q
Sbjct: 174 IMKILRRLADELGKTIVV-VLHDINFASCYSDHIVALKNGKVVKQ 217
|
Length = 252 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 3e-22
Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 31/198 (15%)
Query: 43 ITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV------- 95
+TK L + S+ +G+ L+GP+G GKSTLLK++ PT+G +
Sbjct: 6 VTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDV 65
Query: 96 ---------YVKRPKSFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142
Y++R VFQ+ PD V +VAF L + E+R +V A
Sbjct: 66 SDLRGRAIPYLRRKIGVVFQDFRLLPDR-----NVYENVAFALEVTGVPPREIRKRVPAA 120
Query: 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202
L+ VG+S+ + LSGG++QRVAIA A+ + +L+ DE T LD + ++ +K
Sbjct: 121 LELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLK 180
Query: 203 --NLLGDSGEVTALWVTH 218
N G T + TH
Sbjct: 181 KINKAG----TTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 4e-22
Identities = 69/201 (34%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV---------------YVKRPKSF 103
S G+L LLGPNG GK+TLL+ + GL+ P G V YV + F
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ 163
+ P V TV + +G L + V AL VG++ RPV LSGGQ
Sbjct: 61 AWDFPIS--VAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQ 118
Query: 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223
+QRV +A ALA VLLLDE T LD Q + E L G L TH L +
Sbjct: 119 RQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA--GTAILMTTHDLAQA 176
Query: 224 EYADGAFYMEDGKIVMQADGV 244
+ +G+++ ADG
Sbjct: 177 MATCDRVVLLNGRVI--ADGT 195
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 4e-22
Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 38/248 (15%)
Query: 14 LSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPN 73
+ ++ P ++G+ IE ++++S R VP+L+ +F++ G++ L+GP+
Sbjct: 464 IPLTGTLAPLNLEGL-----IEFQDVSFSY--PNRPDVPVLKGLTFTLHPGEVVALVGPS 516
Query: 74 GCGKSTLLKVLAGLLKPTNG-------------HVYVKRPKSFVFQNPDHQVVMPTVEAD 120
G GKST+ +L L +PT G H Y+ R + V Q P + +V +
Sbjct: 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEP--VLFSGSVREN 574
Query: 121 VAFGLGNLNLTHDEVRSKVAKALDA----VGMSNYLQRPV----QTLSGGQKQRVAIAGA 172
+A+GL T DE AKA +A + N V LSGGQKQR+AIA A
Sbjct: 575 IAYGL---TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631
Query: 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232
L +VL+LDE T+ LD + + E+ T L + HRL +E AD +
Sbjct: 632 LVRKPRVLILDEATSALDAECEQLLQESRS-----RASRTVLLIAHRLSTVERADQILVL 686
Query: 233 EDGKIVMQ 240
+ G +V
Sbjct: 687 KKGSVVEM 694
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 7e-22
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 30/210 (14%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------- 97
P L S + G+ L+G +G GKSTL+ ++ +P +G + +
Sbjct: 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404
Query: 98 KRPKSFVFQNPDHQVVM--PTVEADVAFGLGNLNLTHDEVRSKV--AKALDAV-GMSNYL 152
+R + V Q+ VV+ T+ ++A+G E+ + A A D V + L
Sbjct: 405 RRQVALVSQD----VVLFNDTIANNIAYGRTE-QADRAEIERALAAAYAQDFVDKLPLGL 459
Query: 153 QRPV----QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
P+ LSGGQ+QR+AIA AL + +L+LDE T+ LD + V A++ L+
Sbjct: 460 DTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--- 516
Query: 209 GEVTALWVTHRLEELEYADGAFYMEDGKIV 238
T L + HRL +E AD M+DG+IV
Sbjct: 517 QGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-21
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 21/125 (16%)
Query: 78 STLLKVLAGLLKPTNGHVYV--------------KRPKSFVFQNPDHQVVMPTVEADVAF 123
STLLK++ GLL+PT+G + + ++ VFQ+P TV ++ F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP-QLFPELTVRENLFF 59
Query: 124 GLGNLNLTHDEVRSKVAKALDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLL 182
GL E ++ +AL+ VG+ ++L R PV TLSGGQKQRVAIA AL + K+LLL
Sbjct: 60 GL-----RDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLL 114
Query: 183 DELTT 187
DE T
Sbjct: 115 DEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 4e-21
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----------KRPKSF 103
LRD SF+VP G + L+G NG GKSTL K L G ++ +G + + K ++
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 104 VFQNPDHQVVMPTVEADVA----FG-LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158
V Q+ + P + DV +G +G L R V AL V M + R +
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE 142
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LSGGQK+RV +A A+A+ +V+LLDE T +D + +I ++ L D G+ T L TH
Sbjct: 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR-DEGK-TMLVSTH 200
Query: 219 RL 220
L
Sbjct: 201 NL 202
|
Length = 272 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-21
Identities = 56/203 (27%), Positives = 105/203 (51%), Gaps = 13/203 (6%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RPKSFVFQN----- 107
+ + SF VP G+++ LLGPNG GK+T +++ GLL+PT G + P S +N
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 108 PDHQVVMP--TVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164
P+ + + P TVE + + L L + E++ K+ L+ + + + ++ LS G +
Sbjct: 78 PEERGLYPKMTVEDQLKY-LAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQ 136
Query: 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224
Q++ A+ ++L+LDE + LD + + +A+ L + G T ++ +HR+E +E
Sbjct: 137 QKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE-LKEEG-ATIIFSSHRMEHVE 194
Query: 225 -YADGAFYMEDGKIVMQADGVSI 246
D ++ G+ V+ I
Sbjct: 195 ELCDRLLMLKKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 7e-21
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 26/156 (16%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
+ D SF++ +G+ + GPNG GK+TLL++LAGLL+P G VY +Q Q
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY--------WQGEPIQ 67
Query: 112 VVMPTVEADVAFGLGNLN-----------------LTHDEVRSKVAKALDAVGMSNYLQR 154
V + + + LG+ + + +AL VG++
Sbjct: 68 NVRESYHQALLY-LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL 126
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
PV LS GQ++RVA+A + +LDE T LD
Sbjct: 127 PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 8e-21
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 27/208 (12%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFV 104
++ L+D SF + G+ ++G NG GKSTLLK++AG+ KPT+G V V
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV------- 86
Query: 105 FQNPDHQVVMPTVEADVAF-----GLGN-------LNLTHDEVRSKVAKALDAVGMSNYL 152
V P +E F G N L LT E+ KV + ++ + +++
Sbjct: 87 -----TGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI 141
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212
+PV+T S G R+A + A +LLLDE+ D + Q +E + L+ + T
Sbjct: 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK--T 199
Query: 213 ALWVTHRLEEL-EYADGAFYMEDGKIVM 239
+ V+H L + +Y D A ++E G+I M
Sbjct: 200 IVLVSHDLGAIKQYCDRAIWLEHGQIRM 227
|
Length = 249 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 2e-20
Identities = 75/231 (32%), Positives = 113/231 (48%), Gaps = 39/231 (16%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPK 101
+TK+ L +L +FSV +G+ L+GP+G GKST+L++L L G + V+ +
Sbjct: 5 DVTKRFGILT-VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQ 63
Query: 102 SFVFQNPDHQVVMPTVEADVA---------FGLGNL--------NLTHDEVRSK-VAKA- 142
+ + +V P E + F NL N+T V +A+A
Sbjct: 64 LYHMPGRNGPLV-PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAE 122
Query: 143 --------LDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193
LD VG+++ P Q LSGGQ+QRVAIA ALA KV+L DE+T+ LD
Sbjct: 123 AEKRAMELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE- 180
Query: 194 QFGVIEAVKNL---LGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQ 240
++ V N+ L ++T L VTH + E+AD + + G+IV Q
Sbjct: 181 ---LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 2e-20
Identities = 70/211 (33%), Positives = 97/211 (45%), Gaps = 29/211 (13%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY--------------VK 98
ILR S VP G++ +LG NG GK+TLLK L GLL +G + +
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 99 RPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
++V P + + P TVE ++ GL L ++ ++ L V L R
Sbjct: 75 AGIAYV---PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIY-ELFPVLKEM-LGRRG 129
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV---IEAVKNLLGDSGEVTA 213
LSGGQ+Q++AIA AL K+LLLDE T E Q + I V L G +
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPT----EGIQPSIIKDIGRVIRRLRAEGGMAI 185
Query: 214 LWVTHRLE-ELEYADGAFYMEDGKIVMQADG 243
L V L+ E AD + ME G++V G
Sbjct: 186 LLVEQYLDFARELADRYYVMERGRVVASGAG 216
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-20
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 47 QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQ 106
R + SF++ +G+ + GPNG GK+TLL++LAGLL+P +G V +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 107 NPDHQVVM-----PTVEAD--VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTL 159
+ H+ ++ P ++ + L H + + AL AVG++ + P L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL 128
Query: 160 SGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
S GQ++R+A+A + +LDE TT LD
Sbjct: 129 SAGQQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 4e-20
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 37/214 (17%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
V L D SF +GQ+ L+G NG GKSTLLK+L+G +P G + + + F +
Sbjct: 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG-QEMRFAS--- 72
Query: 111 QVVMPTVEADVAFGLGNLNLTHD----------------------EVRSKVAKALDAVGM 148
+ A VA L+L + + + + L+ +G+
Sbjct: 73 --TTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD--ESDQ-FGVIEAVKNLL 205
P++ LS GQ+Q V IA ALA +V+ DE T+ L E +Q F VI ++
Sbjct: 131 DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR--- 187
Query: 206 GDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV 238
G V L+V+HR+EE+ D +DG+ V
Sbjct: 188 -AEGRVI-LYVSHRMEEIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 5e-20
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 27/155 (17%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
+ SF++ +G+ +L GPNG GK+TLL+++AGLL P G + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD----------GGD 65
Query: 112 VVMPTVEADVAFGLGNLNLTHDEV----------------RSKVAKALDAVGMSNYLQRP 155
+ P V + LG+ N + +A AL+AVG++ P
Sbjct: 66 IDDPDVAEACHY-LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLP 124
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
LS GQK+RVA+A L + +LDE T LD
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159
|
Length = 207 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 6e-20
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 23/194 (11%)
Query: 34 IECSNLNYSIT--KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
+E +L+ + T ++ +P+L++ S +V +G+ L GP+G GKSTLLK L P
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 92 NGHVYVKRPKSFV--FQNPDHQV----------------VMPTVEAD--VAFGLGNLNLT 131
+G + V+ ++V Q +V V+P V A VA L +
Sbjct: 62 SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP 121
Query: 132 HDEVRSKVAKALDAVGMSNYL-QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
+ R++ + L + + L P T SGG++QRV IA +LLLDE T LD
Sbjct: 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181
Query: 191 ESDQFGVIEAVKNL 204
+++ V+E +
Sbjct: 182 AANRQVVVELIAEA 195
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 6e-20
Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPD-------- 109
SF++ +G+ + GPNG GK+TLL++LAGL P G V + FQ
Sbjct: 20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN-GGPLDFQRDSIARGLLYL 78
Query: 110 -HQVVMPTVEADVAFGLGNLNLTH-DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167
H + T + L NL H D +V +AL VG++ + RPV LS GQ++RV
Sbjct: 79 GHAPGIKTTLS----VLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRV 134
Query: 168 AIAGALAEACKVLLLDELTTFLD 190
A+A L + +LDE TT LD
Sbjct: 135 ALARLLLSGRPLWILDEPTTALD 157
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 7e-20
Identities = 52/158 (32%), Positives = 84/158 (53%), Gaps = 11/158 (6%)
Query: 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPK-SFVFQ--NPDHQVVMPTVEAD 120
++ +LGPNG GK+T +K+LAG+LKP G + ++ S+ Q D++ TV D
Sbjct: 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEG---TVR-D 80
Query: 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180
+ + TH ++++AK L + L R V LSGG+ QRVAIA L++ +
Sbjct: 81 LLSSITKDFYTHPYFKTEIAKPL---QIEQILDREVPELSGGELQRVAIAACLSKDADIY 137
Query: 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LLDE + +LD + + ++ ++ E TA V H
Sbjct: 138 LLDEPSAYLDVEQRLMASKVIRRFA-ENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 7e-20
Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 27/185 (14%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV----------------YV 97
L+ +F + G++ L G +G GKSTLLK++ G+ +P+ G + ++
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 98 KRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR-P 155
+R +FQ DH ++M TV +VA L + D++R +V+ ALD VG+ + + P
Sbjct: 78 RRQIGMIFQ--DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK--NLLGDSGEVTA 213
+Q LSGG++QRV IA A+ VLL DE T LD++ G++ + N +G VT
Sbjct: 136 IQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG----VTV 190
Query: 214 LWVTH 218
L TH
Sbjct: 191 LMATH 195
|
Length = 222 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 8e-20
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 43/236 (18%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP- 90
AIE +LN K L+D + +P ++ L+GP+GCGKSTLL+ L +
Sbjct: 6 PAIEVRDLNLYYGDKH-----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI 60
Query: 91 ----TNGHVY-----VKRPK----------SFVFQNPDHQVVMP-TVEADVAFGL---GN 127
G V + PK VFQ P+ P ++ +VA+GL G
Sbjct: 61 PGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN---PFPMSIYDNVAYGLRLHGI 117
Query: 128 LNLTHDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183
+ DE+ V +L + + L + LSGGQ+QR+ IA ALA +VLL+D
Sbjct: 118 KDKELDEI---VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIV 238
E T+ LD + E + L + T + VTH +++ +D + G++V
Sbjct: 175 EPTSALDPISTLKIEELITEL---KKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227
|
Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 9e-20
Identities = 78/257 (30%), Positives = 116/257 (45%), Gaps = 45/257 (17%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKP 90
AIE NLN +K+ L++ + +P Q+ L+GP+GCGKSTLL+ L + L P
Sbjct: 1 AIEIENLNLFYGEKE-----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVP 55
Query: 91 ---TNGHVY---------------VKRPKSFVFQNPDHQVVMP---TVEADVAFGLGNLN 129
G V ++R VFQ P+ P ++ ++A+G L+
Sbjct: 56 GVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN-----PFPMSIYDNIAYGP-RLH 109
Query: 130 LTHD--EVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183
D E+ V ++L + + L LSGGQ+QR+ IA ALA +VLLLD
Sbjct: 110 GIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLD 169
Query: 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQAD 242
E T+ LD G IE + L T + VTH +++ +D + DG++V
Sbjct: 170 EPTSALD-PIATGKIEELIQELKKK--YTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
Query: 243 GVSILNFIK-SRQSSYI 258
I K R YI
Sbjct: 227 TEQIFTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-19
Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 35/193 (18%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVK 98
P+L S +P G+ +LGP+G GKSTLL LAGLL P G V V+
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408
Query: 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV-- 156
R S Q+ + TV ++ + T +E+ AL+ VG++++L+
Sbjct: 409 RRVSVCAQDA--HLFDTTVRENLRLARP--DATDEELW----AALERVGLADWLRALPDG 460
Query: 157 ---------QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
LSGG++QR+A+A AL +LLLDE T LD ++E + L
Sbjct: 461 LDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAAL 518
Query: 208 SGEVTALWVTHRL 220
SG + +TH L
Sbjct: 519 SGRTV-VLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 2e-19
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 64/187 (34%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE NL+ + K +L+D S ++ G L+G NG GKSTLLK++AG L+P G
Sbjct: 1 IELENLSKTYGGK-----LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
V + Y +
Sbjct: 56 I--VTWGSTVKIG--------------------------------------------YFE 69
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGD-SGEV 211
+ LSGG+K R+A+A L E +LLLDE T LD ES IEA++ L + G V
Sbjct: 70 Q----LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES-----IEALEEALKEYPGTV 120
Query: 212 TALWVTH 218
+ V+H
Sbjct: 121 --ILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-19
Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 32/249 (12%)
Query: 13 LLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGP 72
L SP E AI N+ + +L + + + G+ ++GP
Sbjct: 435 LNSPTEPRSAGLAALPELRGAITFENIRFRYAPDS---PEVLSNLNLDIKPGEFIGIVGP 491
Query: 73 NGCGKSTLLKVLAGLLKPTNGHVYV-------------KRPKSFVFQNPDHQVVMPTVEA 119
+G GKSTL K+L L P +G V V +R V Q ++ + ++
Sbjct: 492 SGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ--ENVLFSRSIRD 549
Query: 120 DVAFGLGNLNLTHDEVR--SKVAKALDAV-GMSNYLQRPV----QTLSGGQKQRVAIAGA 172
++A L N + V +K+A A D + + V LSGGQ+QR+AIA A
Sbjct: 550 NIA--LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607
Query: 173 LAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFY 231
L ++L+ DE T+ LD ES+ +I +N+ T + + HRL + D
Sbjct: 608 LVGNPRILIFDEATSALDYESEA--LIM--RNMREICRGRTVIIIAHRLSTVRACDRIIV 663
Query: 232 MEDGKIVMQ 240
+E G+I
Sbjct: 664 LEKGQIAES 672
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-19
Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 30/203 (14%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------------K 98
D +F++P+ + L GP+G GK++L+ ++AGL +P G + + K
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 99 RPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
R +VFQ D ++ P TV ++ +G+ + + + +G+ + L R
Sbjct: 76 RRIGYVFQ--DARL-FPHYTVRGNLRYGMWKSMRAQFD------QLVALLGIEHLLDRYP 126
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
TLSGG+KQRVAI AL A ++LL+DE LD + ++ ++ L D + L+V
Sbjct: 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER-LRDEINIPILYV 185
Query: 217 THRLEELEY-ADGAFYMEDGKIV 238
+H L+E+ AD +E+GK+
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVK 208
|
Length = 352 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-19
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 23/214 (10%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP---KSF--------- 103
S ++ GQ L+G +G GKSTL L L+ + + S
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRR 364
Query: 104 ---VFQNPDHQVVMP--TVEADVAFGL--GNLNLTHDEVRSKVAKALDAVGM-SNYLQRP 155
VFQ+P + + P TV + GL L+ E +V +AL+ VG+ R
Sbjct: 365 MQVVFQDP-YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY 423
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215
SGGQ+QR+AIA AL +++LLDE T+ LD S Q V++ +++L G ++ L+
Sbjct: 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHG-LSYLF 482
Query: 216 VTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248
++H L + M DGKIV Q ++
Sbjct: 483 ISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-19
Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 41/242 (16%)
Query: 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHV 95
+L+ + K+ IL+ + +V G++ ++GPNG GKSTL + G + T G +
Sbjct: 8 DLHVEVEGKK----EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63
Query: 96 YVK-----------RPKS--FV-FQNPDHQVVMP--------TVEADVAFGLGNLNLTHD 133
R ++ F+ FQ P V +P + G +
Sbjct: 64 LFDGEDILELSPDERARAGIFLAFQYP---VEIPGVTNSDFLRAAMNARRGARGILP--- 117
Query: 134 EVRSKVAKALDAVGMS-NYLQRPV-QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191
E ++ + + +G+ +L+R V + SGG+K+R I L K+ +LDE + LD
Sbjct: 118 EFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD- 176
Query: 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY--ADGAFYMEDGKIVMQADGVSILNF 249
D ++ N L + G L +TH L+Y D + DG+IV D +
Sbjct: 177 IDALKIVAEGINALREEG-RGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD-PELAEE 234
Query: 250 IK 251
++
Sbjct: 235 LE 236
|
Length = 251 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 3e-19
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 18/177 (10%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL---KPTNGHVYV---- 97
K K IL D S V SGQ+ +LG +G GK+TLL ++G + T+G +
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 98 ------KRPKSFVFQNPDHQVVMPTVEADVAFG--LGNLNLTHDEVRSKVA--KALDAVG 147
++ ++V Q+ D + TV + + L + D +R K L +
Sbjct: 74 RKPDQFQKCVAYVRQD-DILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA 132
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
++ V+ +SGG+++RV+IA L KVL+LDE T+ LD ++ + L
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKPTNGHV----YVKRPKSFVFQNPDHQVVMPTVEADVAFG 124
+LGPNG GK+T +K+LAG++KP G +P+ ++ + D V D+
Sbjct: 372 ILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQ-YISPDYDGTV------EDLLRS 424
Query: 125 LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
++++ K L+ + + L+RPV LSGG+ QRVAIA AL+ + LLDE
Sbjct: 425 AIRSAFGSSYFKTEIVKPLN---LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDE 481
Query: 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225
+ +LD + V + ++ + ++ E TAL V H + ++Y
Sbjct: 482 PSAYLDVEQRIIVAKVIRRFI-ENNEKTALVVDHDIYMIDY 521
|
Length = 591 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 1e-18
Identities = 66/215 (30%), Positives = 112/215 (52%), Gaps = 24/215 (11%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY----------------V 97
++D S ++ G++++++G +G GKST++++L L++PT G V V
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 98 KRPK-SFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
+R K + VFQ+ +MP TV + AFG+ + +E R K AL VG+ NY
Sbjct: 104 RRKKIAMVFQS---FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS 160
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
LSGG +QRV +A ALA +LL+DE + LD + + + + L + T +
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIV 219
Query: 215 WVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
+++H L+E + D M++G++V ILN
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254
|
Length = 400 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 1e-18
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 19/199 (9%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------KRPKSFVFQN---- 107
SF G++ LGPNG GKST +K++ G L P +G V V + PK V +N
Sbjct: 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIGYL 80
Query: 108 PDHQVVMPT--VEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165
P+H + V + F G + ++ +V + ++ VG+ + + LS G +Q
Sbjct: 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQ 140
Query: 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE- 224
RV +A AL KVL+LDE TT LD + + +KN+ D T + TH ++E+E
Sbjct: 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK---TIILSTHIMQEVEA 197
Query: 225 YADGAFYMEDGKIVMQADG 243
D + GKIV AD
Sbjct: 198 ICDRVIIINKGKIV--ADK 214
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-18
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 43/187 (22%)
Query: 31 GVAIECSNLNYSITKKQRKLV-PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89
GV + NL ++ K +L++ S G+L ++GP+G GKSTLL LAG
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60
Query: 90 P--TNGHVYVKRPKS----------FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137
+G V + +V Q ++ PT LT
Sbjct: 61 GLGVSGEVLINGRPLDKRSFRKIIGYVPQ---DDILHPT-------------LT------ 98
Query: 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197
V + L + L+ LSGG+++RV+IA L +L LDE T+ LD S V
Sbjct: 99 -VRETLM---FAAKLRG----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV 150
Query: 198 IEAVKNL 204
+ ++ L
Sbjct: 151 MSLLRRL 157
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-18
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVKR 99
IL + S + G++ ++G +G GKSTL K++ P NG V +++R
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----GMSNYLQR 154
V Q ++ + ++ ++A +++ +K+A A D + G +
Sbjct: 77 QVGVVLQ--ENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE 134
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QR+AIA AL ++L+ DE T+ LD + ++ + ++ T +
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR---TVI 191
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQ 240
+ HRL ++ AD ME G+IV Q
Sbjct: 192 IIAHRLSTVKNADRIIVMEKGRIVEQ 217
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-18
Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 27/212 (12%)
Query: 45 KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RPKSF 103
K+ + + S +VP ++ LLGPNG GKSTLLK++ G+L+PT+G + P +
Sbjct: 7 SKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT- 65
Query: 104 VFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVR----------SKVAKALDAVGMSNYL 152
D + +E+ + NLT + ++ S++ + L+ V ++N
Sbjct: 66 ---RKDLHKIGSLIESPPLYE----NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG 118
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE-- 210
++ + S G KQR+ IA AL K+L+LDE T LD G I+ ++ L+ E
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP---IG-IQELRELIRSFPEQG 174
Query: 211 VTALWVTHRLEELEY-ADGAFYMEDGKIVMQA 241
+T + +H L E++ AD + +G + Q
Sbjct: 175 ITVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 4e-18
Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 24/189 (12%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99
N S++ QR+ +L D S + G++ LLGPNG GKSTL++V+ GL+ P G +KR
Sbjct: 9 NVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG--VIKR 63
Query: 100 PKS----FVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
+V Q +P TV F L L + + AL V + +
Sbjct: 64 NGKLRIGYVPQKLYLDTTLPLTVN---RF----LRLRPGTKKEDILPALKRVQAGHLIDA 116
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ---FGVIEAVKNLLGDSGEV 211
P+Q LSGG+ QRV +A AL ++L+LDE T +D + Q + +I+ ++ L
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD----C 172
Query: 212 TALWVTHRL 220
L V+H L
Sbjct: 173 AVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 8e-18
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 23/189 (12%)
Query: 34 IECSNLNYSITKKQRKLV--PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
+ SN++ + T Q+ V P+LR+ S SV +G+ +L GP+G GKSTLL+ L P
Sbjct: 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64
Query: 92 NGHVYVKRPKSFV--FQNPDHQV----------------VMPTVEA--DVAFGLGNLNLT 131
G + V+ +V +V V+P V A VA L +
Sbjct: 65 EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP 124
Query: 132 HDEVRSKVAKALDAVGMSNYL-QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
+ R+K A L + + L T SGG++QRV IA +LLLDE T LD
Sbjct: 125 REVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
Query: 191 ESDQFGVIE 199
+++ V+E
Sbjct: 185 ATNRAVVVE 193
|
Length = 235 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 9e-18
Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 39/260 (15%)
Query: 2 RLVRSFTV---TPHLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCS 58
+L F V P + PP +I R+ G A+E ++++S + + D S
Sbjct: 305 KLEEFFEVEDAVPDVRDPPGAIDLGRVKG-----AVEFDDVSFSYDNSR----QGVEDVS 355
Query: 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------KRPKSFVF 105
F GQ ++GP G GKSTL+ +L + P +G + + +R + VF
Sbjct: 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415
Query: 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVR--SKVAKALDAV-GMSNYLQRPV----QT 158
Q+ + ++E ++ +G + T +E+R ++ A+A D + + V +
Sbjct: 416 QDA--GLFNRSIEDNIR--VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ 471
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LSGG++QR+AIA AL + +L+LDE T+ LD + V A+ L+ T + H
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGR---TTFIIAH 528
Query: 219 RLEELEYADGAFYMEDGKIV 238
RL + AD ++G++V
Sbjct: 529 RLSTVRNADRILVFDNGRVV 548
|
Length = 588 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-17
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 16/153 (10%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KR 99
V I +D + + G+ + +GP+GCGKSTLL+++AGL T+G +++ +R
Sbjct: 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAER 75
Query: 100 PKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
VFQ+ + P +V +++FGL +E+ +V + + + +++ L R +
Sbjct: 76 GVGMVFQS---YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPK 132
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
LSGGQ+QRVAI L V LLDE + LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-17
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 36/211 (17%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK----------------- 98
+ S + G++ +L+G +G GKSTLL+ + GL + G V VK
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 99 --RPK--SFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL 152
R S VFQ ++P TVE +VAFGL + E R +V + L+ VG++ +
Sbjct: 102 RLRTHRVSMVFQ---QFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWA 158
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD----ESDQFGVIEAVKNLLGDS 208
R LSGG +QRV +A A A +LL+DE + LD Q ++E L
Sbjct: 159 DRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKL---- 214
Query: 209 GEVTALWVTHRLEE-LEYADGAFYMEDGKIV 238
+ T ++V+H L+E L+ + ME G+I+
Sbjct: 215 -KKTIVFVSHDLDEALKIGNRIAIMEGGRII 244
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-17
Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 53 ILRDCSFSV-------------PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-K 98
LR+ SF V P+G++ L+G NG GKSTLLK+L P+ G + +
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 99 RP------KSFVFQNPDHQVVMP-----TVEADVAFGL----GNLNLTHDEVRSKVAKAL 143
+P K+F + +P TV VA G G L R KV +A+
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI 132
Query: 144 DAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203
VG+ R V +LSGG++QR IA +A+ + LLLDE T+ LD + Q V+ V
Sbjct: 133 SLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 204 LLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADGVSILN 248
L + G +T + V H + Y D + G+++ Q ++
Sbjct: 193 LSQERG-LTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 1e-17
Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 11/151 (7%)
Query: 70 LGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129
+GPNG GK+T K+LAG+LKP G V + S+ P Q + P + V L ++
Sbjct: 371 VGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY---KP--QYIKPDYDGTVEDLLRSIT 425
Query: 130 LTHDE--VRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187
+S++ K L + L + V+ LSGG+ QRVAIA L+ + LLDE +
Sbjct: 426 DDLGSSYYKSEIIKPL---QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482
Query: 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LD + V +A++ + + E TAL V H
Sbjct: 483 HLDVEQRLAVAKAIRRIA-EEREATALVVDH 512
|
Length = 590 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 1e-17
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 26/153 (16%)
Query: 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVM 114
SF++ +G+L + GPNG GK++LL++LAGL +P G V +Q +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVL--------WQGEPIRRQR 69
Query: 115 PTVEADVAFGLGNLN-----LT-----------HDEVRS-KVAKALDAVGMSNYLQRPVQ 157
D+ + LG+ LT H + +AL VG++ + PV+
Sbjct: 70 DEYHQDLLY-LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVR 128
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
LS GQ++RVA+A + +LDE T +D
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-17
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 48/211 (22%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------------- 98
+L + SFS+ G++ ++G +G GKSTLL +L GL PT+G V
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 99 ---RPKSFVFQN----PD----HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG 147
+ F++Q PD V MP + +G E+ S+ + L AVG
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLL-------IGKKK--PAEINSRALEMLAAVG 134
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ + LSGG++QRVAIA AL +++L DE T LD + +++ LLG+
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA----DSIFQLLGE 190
Query: 208 --SGEVTA-LWVTHRLE-------ELEYADG 228
+ TA L VTH L+ +LE DG
Sbjct: 191 LNRLQGTAFLVVTHDLQLAKRMSRQLEMRDG 221
|
Length = 233 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-17
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 47/222 (21%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPT 91
+E +L+ S+ K+ IL+ + ++ G++ L+GPNG GKSTL K + G + T
Sbjct: 1 LEIKDLHVSVGGKE-----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT 55
Query: 92 NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA--------KAL 143
G + K G +L +E R+++ +
Sbjct: 56 EGEILFK-------------------------GEDITDLPPEE-RARLGIFLAFQYPPEI 89
Query: 144 DAVGMSNYLQRPV-QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202
V +++L R V + SGG+K+R I L + +LDE + LD D ++ V
Sbjct: 90 PGVKNADFL-RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVAEVI 147
Query: 203 NLLGDSGEVTALWVTHRLEELEY--ADGAFYMEDGKIVMQAD 242
N L + G + L +TH L+Y D + DG+IV D
Sbjct: 148 NKLREEG-KSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 3e-17
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89
S VAI+ ++ S K ++ D SF++ G+ + LLGPNG GKST+ ++L G++
Sbjct: 1 SNVAIDLVGVSKSYGDKV-----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55
Query: 90 PTNGHVYV-----------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138
P G + V R V D+ TV ++ ++ E+ +
Sbjct: 56 PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV 115
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
+ L+ + + V LSGG K+R+ +A AL ++L+LDE TT LD + +
Sbjct: 116 IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 199 EAVKNLLGDSGEVTALWVTHRLEELE 224
E +++LL T L TH +EE E
Sbjct: 176 ERLRSLLARGK--TILLTTHFMEEAE 199
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 3e-17
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 22/166 (13%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ NL+ K++ ++ S SV G++ LLGPNG GK+T ++ GL+KP +G
Sbjct: 1 LRAENLSKRYGKRK-----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG 55
Query: 94 HVYVKRPKSFVFQNPDHQ------VVMP---------TVEADVAFGLGNLNLTHDEVRSK 138
+ + + + P H+ +P TVE ++ L L+ E K
Sbjct: 56 KILLD--GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK 113
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
+ + L+ +++ + +LSGG+++RV IA ALA K LLLDE
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-17
Identities = 71/236 (30%), Positives = 107/236 (45%), Gaps = 37/236 (15%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
AIE NL K+ +L V G++ ++GP+G GK+TLL+ + L +P
Sbjct: 3 AIEVKNL-----VKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA 57
Query: 93 GHVYV-------KRPKS--------------FVFQN----PDHQVVMPTVEADVAFGLGN 127
G + V R S FVFQN P V+ +E V
Sbjct: 58 GTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--- 114
Query: 128 LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187
+E ++ + L VG++ + LSGGQ+QRVAIA ALA +V+L DE T+
Sbjct: 115 -GEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTS 173
Query: 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQAD 242
LD V+ ++ L + + T + VTH + + AD A +M+ G+IV Q
Sbjct: 174 ALDPELVGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227
|
Length = 250 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 4e-17
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 27/155 (17%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113
L D S V G+L +++GPNG GK+T++ V+ G +P G V + P+HQ+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD--LTGLPEHQIA 75
Query: 114 M---------PTVEADVAFGLGNLNLT---------------HDEVRSKVAKALDAVGMS 149
PTV ++ NL L E + ++ + L+ +G++
Sbjct: 76 RAGIGRKFQKPTVFENLTV-FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA 134
Query: 150 NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
+ R LS GQKQ + I L + K+LLLDE
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 5e-17
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 39/213 (18%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-------------YVK 98
PIL SF++P G+ ++G +G GKST+L++L +G + ++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA------------LDA- 145
R V Q D + T+ ++ +G + T +EV + A D
Sbjct: 337 RAIGIVPQ--DTVLFNDTIAYNIKYG--RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392
Query: 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205
VG L+ LSGG+KQRVAIA + + +L+LDE T+ LD + + A++ +
Sbjct: 393 VGE-RGLK-----LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREV- 445
Query: 206 GDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
S T L + HRL + AD +++G+IV
Sbjct: 446 --SAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476
|
Length = 497 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 5e-17
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYV-----------K 98
+L + +F++ G++ L+GP+GCGKSTLL + G L G +++ +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 99 RPKSFVFQNP---DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP 155
R +FQ+ H +V ++ F L L + R+ AL+ G+ +
Sbjct: 77 RQIGILFQDALLFPHL----SVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQD 131
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES--DQFGVIEAVKNLLGDSGEVTA 213
TLSGGQ+ RVA+ AL K LLLDE + LD + DQF + V + + +G +
Sbjct: 132 PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR--QWVFSEVRAAG-IPT 188
Query: 214 LWVTHRLEELE 224
+ VTH L+++
Sbjct: 189 VQVTHDLQDVP 199
|
Length = 213 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 5e-17
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 27/217 (12%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------K 98
IL D S ++ ++G +G GKSTL K+L G + +G + + +
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR 547
Query: 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA-LDA------VGMSNY 151
+ +++ Q P + ++ ++ G N++ DE+ + A + +G
Sbjct: 548 QFINYLPQEP--YIFSGSILENLLLG-AKENVSQDEIWAACEIAEIKDDIENMPLGYQTE 604
Query: 152 LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211
L ++SGGQKQR+A+A AL KVL+LDE T+ LD + ++ + NL +
Sbjct: 605 LSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL----QDK 660
Query: 212 TALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
T ++V HRL + +D ++ GKI+ Q +L+
Sbjct: 661 TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-17
Identities = 64/188 (34%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-----------HVYVKRPK 101
++ SF V G+ + LLGPNG GK+T L++L GL P G R +
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81
Query: 102 SFV---FQN--PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
V F N PD V E + FG L+ R+ V L+ + N V
Sbjct: 82 VGVVPQFDNLDPDFTV----RENLLVFGR-YFGLSAAAARALVPPLLEFAKLENKADAKV 136
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
LSGG K+R+ +A AL VL+LDE TT LD + + E +++LL G+ T L
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGK-TILLT 194
Query: 217 THRLEELE 224
TH +EE E
Sbjct: 195 THFMEEAE 202
|
Length = 306 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 6e-17
Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 33/227 (14%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
A+E ++ + + + D SF +GQ ++GP G GK+TL+ +L + PT
Sbjct: 334 AVEFRHITFEFANSSQGV----FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV 389
Query: 93 GHVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV--RS 137
G + + ++ + VFQ D + ++ ++ LG T +EV +
Sbjct: 390 GQILIDGIDINTVTRESLRKSIATVFQ--DAGLFNRSIRENIR--LGREGATDEEVYEAA 445
Query: 138 KVAKALDAV--GMSNYL----QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191
K A A D + + Y +R + LSGG++QR+AIA A+ + +L+LDE T+ LD
Sbjct: 446 KAAAAHDFILKRSNGYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVLDEATSALDV 504
Query: 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ V A+ L + T + HRL + AD +++ G+++
Sbjct: 505 ETEARVKNAIDALRKNR---TTFIIAHRLSTVRNADLVLFLDQGRLI 548
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113
L D SFSV G+L +L+GPNG GK+TL+ V+ G +P G V + + P+H++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTD-LTKLPEHRIA 79
Query: 114 M---------PTVEADVAFGLGNLNLT---------------HDEVRSKVAKALDAVGMS 149
PTV ++ NL L E R ++ + L +G+
Sbjct: 80 RAGIGRKFQKPTVFENLTV-RENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 150 NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ R LS GQKQ + I LA+ K+LLLDE + +++ E +K+L G
Sbjct: 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK 196
|
Length = 249 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-16
Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 30/210 (14%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPD-- 109
P LR SFS+ +G+ ++GP+G GKSTL +++ G+ PT+G V R + D
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV---RLDGADLKQWDRE 388
Query: 110 ----HQVVMP--------TVEADVA-FGLGNLNLTHDEV--RSKVAKALDAV-----GMS 149
H +P TV ++A FG N +++ +K+A + + G
Sbjct: 389 TFGKHIGYLPQDVELFPGTVAENIARFGE---NADPEKIIEAAKLAGVHELILRLPDGYD 445
Query: 150 NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209
+ TLSGGQ+QR+A+A AL K+++LDE + LDE + + A+K L +
Sbjct: 446 TVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL--KAR 503
Query: 210 EVTALWVTHRLEELEYADGAFYMEDGKIVM 239
+T + +THR L D ++DG+I
Sbjct: 504 GITVVVITHRPSLLGCVDKILVLQDGRIAR 533
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 2e-16
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 45/238 (18%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
V++ +N++++ + + P+L+ S + +G+ LLG GCGKSTLL++L P
Sbjct: 337 VSLTLNNVSFTYPDQPQ---PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393
Query: 92 NGHVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138
G + + ++ S V Q + T+ ++ N + DE
Sbjct: 394 QGEILLNGQPIADYSEAALRQAISVVSQRVH--LFSATLRDNLLLAAPNAS---DE---A 445
Query: 139 VAKALDAVGMSNYLQ-------------RPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185
+ + L VG+ L+ R LSGG+++R+ IA AL +LLLDE
Sbjct: 446 LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQ---LSGGEQRRLGIARALLHDAPLLLLDEP 502
Query: 186 TTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242
T LD E+++ + ++ L + T L +THRL LE D M++G+I+ Q
Sbjct: 503 TEGLDAETER----QILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556
|
Length = 574 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 2e-16
Identities = 61/214 (28%), Positives = 111/214 (51%), Gaps = 35/214 (16%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--------------- 97
IL+D + +P+ ++ ++GP+G GKSTLLKVL L++ + + V
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 98 ----KRPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHD-EVRSKVAKALDAVGM-- 148
++ VFQ P+ P ++ ++A+ L + + E++ V + L VG+
Sbjct: 85 AIKLRKEVGMVFQQPNP---FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 149 --SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
+ L P LSGGQ+QR+ IA ALA KVLL+DE T+ +D + +A++ L+
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS----QAIEKLIT 197
Query: 207 D-SGEVTALWVTHRLEEL-EYADGAFYMEDGKIV 238
+ E+ + V+H +++ AD ++ +G++V
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV 231
|
Length = 257 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 41 YSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHV-Y 96
T K R +PIL+D S V G++ ++LG G G STLLK LA + G + Y
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69
Query: 97 VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
P + +++ E DV F LT VR + AL G V
Sbjct: 70 NGIPYKEFAEKYPGEIIY-VSEEDVHFP----TLT---VRETLDFALRCKGNEF-----V 116
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
+ +SGG+++RV+IA AL VL D T LD S +++ ++ +
Sbjct: 117 RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-16
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 38/238 (15%)
Query: 41 YSITK---KQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY- 96
Y + + K +LV L SF++ G+ ++G +GCGKSTL ++L + PT G +Y
Sbjct: 15 YPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYY 74
Query: 97 -----VKRPKS----------FVFQNP-----DHQVVMPTVEADVAFGLGNLNLTHDEVR 136
+K VFQNP + V +E + N +L+ E R
Sbjct: 75 QGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI---NTSLSAAERR 131
Query: 137 SKVAKALDAVGM-SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195
K + VG+ + R SGGQ+QR+AIA AL V++ DE + LD S
Sbjct: 132 EKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS--- 188
Query: 196 GVIEA-VKNLLGDSGE---VTALWVTHRLEELEY-ADGAFYMEDGKIVMQADGVSILN 248
++A V NL+ D + ++ ++++H L +E+ AD M G+ V + I N
Sbjct: 189 --VQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244
|
Length = 327 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 58/238 (24%)
Query: 34 IECSNLN--YSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
+E N+ YS + P++ + S ++ GQ L+G +G GKST+ K++AGL +P
Sbjct: 478 VELRNITFGYSPLEP-----PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532
Query: 92 NGHVY---VKR---PKSFVFQNPDHQVVMPTVEADVAFGLGNL--NLT------------ 131
+G + + R P+ + + V M V+ D+ G + NLT
Sbjct: 533 SGEILFDGIPREEIPREVLA----NSVAM--VDQDIFLFEGTVRDNLTLWDPTIPDADLV 586
Query: 132 --------HDEVRSKVAKALDAV---GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180
HD + S+ DA G +N LSGGQ+QR+ IA AL +L
Sbjct: 587 RACKDAAIHDVITSRPG-GYDAELAEGGAN--------LSGGQRQRLEIARALVRNPSIL 637
Query: 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+LDE T+ LD + + + ++ G T + V HRL + D +E GK+V
Sbjct: 638 ILDEATSALDPETEKIIDDNLRR----RG-CTCIIVAHRLSTIRDCDEIIVLERGKVV 690
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-16
Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 23 SRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLK 82
+ I G S VAI+ + ++ S K ++ SF+V SG+ + LLGPNG GKST+ +
Sbjct: 31 ASIPGSMSTVAIDLAGVSKSYGDK-----AVVNGLSFTVASGECFGLLGPNGAGKSTIAR 85
Query: 83 VLAGLLKPTNGHVYV-----------KRPKSFV---FQNPDHQVVMPTV-EADVAFGLGN 127
++ G+ P G + V R + V F N D + TV E + FG
Sbjct: 86 MILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEF---TVRENLLVFGR-Y 141
Query: 128 LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187
++ E+ + + L+ + + V LSGG K+R+ +A AL ++L+LDE TT
Sbjct: 142 FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
Query: 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224
LD + + E +++LL T L TH +EE E
Sbjct: 202 GLDPHARHLIWERLRSLLARGK--TILLTTHFMEEAE 236
|
Length = 340 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 1e-15
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 43/172 (25%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS----FVFQN 107
+L+D SF + G ++ GP+G GKS+L + LAGL +G + P+ F+ Q
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG--MPEGEDLLFLPQR 72
Query: 108 PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167
P LG L R ++ D LSGG++QR+
Sbjct: 73 P-------------YLPLGTL-------REQLIYPWD------------DVLSGGEQQRL 100
Query: 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHR 219
A A L K + LDE T+ LDE + + + +K L +T + V HR
Sbjct: 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG-----ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-15
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 37/235 (15%)
Query: 28 IESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL 87
++SG I+ N++++ +L++ + SVPS L+G G GKSTL +L G
Sbjct: 336 LQSG-RIDIDNVSFAYRDDN----LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 88 LKPTNGHVYVK-RPKSFVFQNPDHQVVM---------PTVEADVAFGLGNLNLTHDEVRS 137
T G + + RP S + H V+ P V AD N+ L D
Sbjct: 391 YPLTEGEIRLDGRPLSSL----SHSVLRQGVAMVQQDPVVLADTFL--ANVTLGRDISEE 444
Query: 138 KVAKALDAV-------GMSNYLQRPV----QTLSGGQKQRVAIAGALAEACKVLLLDELT 186
+V +AL+ V + + L P+ LS GQKQ +A+A L + ++L+LDE T
Sbjct: 445 QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEAT 504
Query: 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWV-THRLEELEYADGAFYMEDGKIVMQ 240
+D G +A++ L E T L V HRL + AD + G+ V Q
Sbjct: 505 ANIDS----GTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555
|
Length = 592 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-15
Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 45/207 (21%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------------- 98
+L+ S +G + ++G +G GKST L+ + L KP+ G + V
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 99 RPK------------SFVFQNPD---HQVVMPTV-EADVAFGLGNLNLTHDEVRSKVAKA 142
+P VFQ+ + H V+ V EA V L ++ E + K
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV----LGVSKAEAIERAEKY 136
Query: 143 LDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201
L VG++ P LSGGQ+QRVAIA ALA +V+L DE T+ LD ++ V
Sbjct: 137 LAKVGIAEKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE----LVGEV 191
Query: 202 KNLLGDSGEV--TALWVTHRLEELEYA 226
++ D E T + VTH E+ +A
Sbjct: 192 LKVMQDLAEEGRTMVVVTH---EMGFA 215
|
Length = 256 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE N+ ++ K+ VP LR+ +F +P+G+ L+G +G GKST+ +L G
Sbjct: 342 IEFRNVTFTYPGKE---VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 94 HVYVK--RPKSFVFQNPDHQVVM---------PTVEADVAFGLGNLNLTHDEVRSKVAKA 142
+ + + + + +QV + T+ ++A+ + +++ + A+
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-QYSREQI-EEAARM 456
Query: 143 LDAVGMSNYLQRPVQT--------LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
A+ N + + T LSGGQ+QR+AIA AL +L+LDE T+ LD +
Sbjct: 457 AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ A+ L + T+L + HRL +E AD +EDG+IV
Sbjct: 517 RAIQAALDELQKNR---TSLVIAHRLSTIEKADEILVVEDGEIV 557
|
Length = 582 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 4e-15
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 30/220 (13%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL------------AGLLKPTNGHVY----V 97
L+ + +P+ Q+ L+GP+GCGKSTLL+ L G L +Y V
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 98 KRPK---SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK-VAKALDAVGM----S 149
+ VFQ P+ M E +VA+GL + +V + V ++L +
Sbjct: 79 ADLRIKVGMVFQKPN-PFPMSIYE-NVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK 136
Query: 150 NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209
+ L+ LSGGQ+QR+ IA +A V+L+DE T+ LD + E ++ L +
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN-- 194
Query: 210 EVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248
T + VTH +++ +D + G++V D I +
Sbjct: 195 -YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233
|
Length = 249 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 4e-15
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 27/181 (14%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS----FVFQN 107
+L + +F V G+ ++ G +G GK++LL+ LAGL +G + P F+ Q
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR--ISMPADSALLFLPQR 464
Query: 108 PDHQVVMPTV---EADVAFGLGNLNLTHDEVRSKVAKALDAVG---MSNYLQRPV---QT 158
P +P EA + + + + E + L VG ++ L +
Sbjct: 465 P----YLPQGTLREA-LCYPNAAPDFSDAE----LVAVLHKVGLGDLAERLDEEDRWDRV 515
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LSGG++QR+A A L K + LDE T+ LDE + + + +K L D T + V H
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPD---ATVISVGH 572
Query: 219 R 219
R
Sbjct: 573 R 573
|
Length = 604 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-15
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 26/218 (11%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------- 97
+L + ++ G++ +++GP+G GKSTLL+ + L + T+G + V
Sbjct: 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDER 73
Query: 98 --KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKAL-DAVGMSNYLQR 154
++ VFQ + +E +V FG + E K A+ L VG++
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALE-NVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH 132
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
LSGGQ+QRVAIA ALA K++L DE T+ LD + V++ +++ L + G +T +
Sbjct: 133 YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD-LAEEG-MTMV 190
Query: 215 WVTHRLEELEYADGA----FYMEDGKIVMQADGVSILN 248
VTH E+ +A+ +++ G+I D ++
Sbjct: 191 IVTH---EIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-15
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 26/211 (12%)
Query: 46 KQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RPKSFV 104
KQ V +L+ F++ +G++ LLG NG GKSTL+K++AG++ P +G + + P + +
Sbjct: 19 KQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL 78
Query: 105 FQNPDHQV---VMP---------TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL 152
HQ+ ++P +V+ ++ FGL K+ + L A+G L
Sbjct: 79 TPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDL 134
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD--ESDQ-FGVIEAVKNLLGDSG 209
+L +Q V I L ++L+LDE T L E+++ F I L G
Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE----LLAQG 190
Query: 210 EVTALWVTHRLEEL-EYADGAFYMEDGKIVM 239
V ++++H+L E+ + AD M DG I +
Sbjct: 191 -VGIVFISHKLPEIRQLADRISVMRDGTIAL 220
|
Length = 510 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-15
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 37/215 (17%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNGHVYVK-----------RP 100
D + S+ G++ L+G +G GKS + GLL P T+G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 101 KSFVFQNPD---------HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN- 150
+ + QNP + T+ + L + R+ + +AL+AVG+ +
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRS--------LGKLSKQARALILEALEAVGLPDP 115
Query: 151 --YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
L++ LSGG QRV IA AL L+ DE TT LD +Q V++ ++ L
Sbjct: 116 EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLF 175
Query: 209 GEVTALWVTHRLEELEY-ADGAFYMEDGKIVMQAD 242
G L +TH L + AD M+DG+IV +
Sbjct: 176 G-TGILLITHDLGVVARIADEVAVMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 6e-15
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L++ SF + GQL + G G GKS+LL ++ G L+P+ G + SF Q
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTS--- 496
Query: 112 VVMP-TVEADVAFGLGNLNLTHDEVR-SKVAKAL----DAVGMSNYLQRPVQ----TLSG 161
+MP T++ ++ FG L++DE R + V KA D + + TLSG
Sbjct: 497 WIMPGTIKDNIIFG-----LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSG 551
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-VKNLLGDSGEVTALWVTHRL 220
GQ+ R+++A A+ + + LLD T LD + + E+ + L+ + T + VT +L
Sbjct: 552 GQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNK---TRILVTSKL 608
Query: 221 EELEYADGAFYMEDG 235
E L+ AD + +G
Sbjct: 609 EHLKKADKILLLHEG 623
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 6e-15
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 38/173 (21%)
Query: 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH 94
E N+NY I KQ +++D S V G L+GPNGCGK+TLLK++ G L+ +G
Sbjct: 321 EMENVNYQIDGKQ-----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGR 375
Query: 95 VYV--KRPKSFVFQ-----NPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG 147
++ K ++ Q +P+ TV ++A G + V + L
Sbjct: 376 IHCGTKLEVAYFDQHRAELDPEK-----TVMDNLAEGKQEV-----MVNGRPRHVL---- 421
Query: 148 MSNYLQ----------RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
YLQ PV+ LSGG++ R+ +A + +L+LDE T LD
Sbjct: 422 --GYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 6e-15
Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 24/201 (11%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-----------YVKRPK--SFV 104
SF++ GQ ++G NG GKSTL K+LAG+++PT+G + Y R K +
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMI 92
Query: 105 FQNPD-----HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-SNYLQRPVQT 158
FQ+P+ + ++ + N +L ++ R ++ + L VG+ ++
Sbjct: 93 FQDPNTSLNPRLRIGQILDFPLRL---NTDLEPEQRRKQIFETLRMVGLLPDHANYYPHM 149
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
L+ GQKQRVA+A AL K+++ DE LD S + +I + L G ++ ++VT
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG-ISYIYVTQ 208
Query: 219 RLEELEY-ADGAFYMEDGKIV 238
+ +++ +D M +G++V
Sbjct: 209 HIGMIKHISDQVLVMHEGEVV 229
|
Length = 267 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 6e-15
Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 32/190 (16%)
Query: 61 VP-SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG--------------------HVYVKR 99
VP GQ+ L+GPNG GKST LK+LAG LKP G Y +
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81
Query: 100 PKS---FVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP 155
V P + ++P V+ V L + R K+ + +D + + + L R
Sbjct: 82 LLEGDVKVIVKPQYVDLIPKAVKGKV---GELLKKKDE--RGKLDELVDQLELRHVLDRN 136
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215
+ LSGG+ QRVAIA ALA DE +++LD + ++ L D V L
Sbjct: 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV--LV 194
Query: 216 VTHRLEELEY 225
V H L L+Y
Sbjct: 195 VEHDLAVLDY 204
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 9e-15
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL---KPTNGHV-----YVKRP----- 100
L ++ G++ LLGP+G GKSTLL+ L+GL+ K H+ V+R
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 101 ---KS-----FVFQNPDHQVVMPTVEADVAFG-LGN-------LNLTHDEVRSKVAKALD 144
KS ++FQ + V +V +V G LG+ + E + + +AL
Sbjct: 80 DIRKSRANTGYIFQQFN-LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT 138
Query: 145 AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
VGM ++ + V TLSGGQ+QRVAIA AL + KV+L DE LD V++ ++++
Sbjct: 139 RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 205 LGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADGVS 245
+ G +T + H+++ L Y + + G + DG S
Sbjct: 199 NQNDG-ITVVVTLHQVDYALRYCERIVALRQGHVFY--DGSS 237
|
Length = 262 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 9e-15
Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--- 89
AIE NL +++ +P ++ L+GP+GCGKSTLL+ LL+
Sbjct: 4 AIETVNLRVYYGSNH-----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE 58
Query: 90 -----------------PTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFG--LGNLNL 130
P + V+R VFQ P+ + T+ +VA G L L
Sbjct: 59 EARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHL-TIYDNVAIGVKLNGLVK 117
Query: 131 THDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186
+ E+ +V AL + + L LSGGQ+QR+ IA ALA K+LL+DE T
Sbjct: 118 SKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
Query: 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
+D + E + L E T + VTH
Sbjct: 178 ANIDPVGTAKIEELLFEL---KKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 41/226 (18%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY------------VK 98
V ++ SF + +G+ L+G +G GKS + GLL P+ + +
Sbjct: 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-PSPAAAHPSGSILFDGEDLLA 81
Query: 99 RPK-----------SFVFQ------NPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVA 140
+ +FQ NP H T+ +A L + L+ R++
Sbjct: 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLH-----TIGKQLAEVLRLHRGLSRAAARARAL 136
Query: 141 KALDAVGM---SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197
+ L+ VG+ L LSGGQ+QRV IA ALA +L+ DE TT LD + Q +
Sbjct: 137 ELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQI 196
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242
++ +K L + G + L++TH L + ++AD + M+ G+IV
Sbjct: 197 LDLLKELQAELG-MAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241
|
Length = 534 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 1e-14
Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 38/232 (16%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------RPK---- 101
+L+ S +G + ++G +G GKST L+ + L KP+ G + V R K
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 102 ---------------SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV 146
+ VFQ+ + M +E + + L L+ E R + K L V
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 147 GMSNYLQR--PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
G+ Q PV LSGGQ+QRV+IA ALA +VLL DE T+ LD + G + +
Sbjct: 140 GIDERAQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALD-PELVGEVLRIMQQ 197
Query: 205 LGDSGEVTALWVTHRLEELEYA----DGAFYMEDGKIVMQADGVSILNFIKS 252
L + G+ T + VTH E+ +A ++ GKI + + +S
Sbjct: 198 LAEEGK-TMVVVTH---EMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-14
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 28/192 (14%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYV-------- 97
V +L + +P + L+GP+G GKSTLL+V L++ +G VY+
Sbjct: 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 98 -----KRPKSFVFQNPDHQVVMPTVEADVAFG--LGNLNLTHDEVRSKVAKALDAVGM-- 148
+R VFQ P+ + E +VA G L L + E++ +V AL+ +
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFE-NVALGLKLNRLVKSKKELQERVRWALEKAQLWD 134
Query: 149 --SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
+ L P LSGGQ+QR+ IA ALA +VLL DE T LD + IE++ L
Sbjct: 135 EVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT-AKIESL--FLE 191
Query: 207 DSGEVTALWVTH 218
++T + VTH
Sbjct: 192 LKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 1e-14
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 37/213 (17%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY--VKRPKSFVFQNP 108
+ L + + +P+GQL M++G GCGKS+LL + G ++ G V+ K F+
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73
Query: 109 DHQ-------------VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS---NYL 152
+ ++ TVE ++ FG N + + DA + + L
Sbjct: 74 RSRNRYSVAYAAQKPWLLNATVEENITFG-SPFN------KQRYKAVTDACSLQPDIDLL 126
Query: 153 QRPVQT--------LSGGQKQRVAIAGALAEACKVLLLDELTTFLD--ESDQFGVIEAVK 202
QT LSGGQ+QR+ +A AL + ++ LD+ + LD SD + E +
Sbjct: 127 PFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL-MQEGIL 185
Query: 203 NLLGDSGEVTALWVTHRLEELEYADGAFYMEDG 235
L D T + VTH+L+ L +AD M+DG
Sbjct: 186 KFLQDDKR-TLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-14
Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 32/211 (15%)
Query: 49 KLVP--ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQ 106
+L P +LRD S SVP G+L ++LG G GKSTLL+ L + + G V+ +R ++V Q
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQ 728
Query: 107 NPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ--------- 157
++ TV ++ F DE + A+ DAV +S L+ +
Sbjct: 729 QA--WIMNATVRGNILF--------FDEEDA--ARLADAVRVSQ-LEADLAQLGGGLETE 775
Query: 158 ------TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211
LSGGQK RV++A A+ V LLD+ + LD V+E LG
Sbjct: 776 IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC--FLGALAGK 833
Query: 212 TALWVTHRLEELEYADGAFYMEDGKIVMQAD 242
T + TH++ + AD + DG++
Sbjct: 834 TRVLATHQVHVVPRADYVVALGDGRVEFSGS 864
|
Length = 1560 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-14
Identities = 63/235 (26%), Positives = 96/235 (40%), Gaps = 41/235 (17%)
Query: 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNG 93
+L+ S+ K IL+ + +V G++ ++GPNG GKSTL K +AG P T+G
Sbjct: 5 DLHVSVEDK-----EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSG 57
Query: 94 HVYVK-----------RPKSFVFQNPDHQVVMPTVEADV-----------AFGLGNLNLT 131
+ K R ++ +F + +P V A G L+L
Sbjct: 58 TILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDL- 116
Query: 132 HDEVRSKVAKALDAVGMS-NYLQRPVQT-LSGGQKQRVAIAGALAEACKVLLLDELTTFL 189
+ + L +GM +L R V SGG+K+R I K+ +LDE+ + L
Sbjct: 117 -LDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGL 175
Query: 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY--ADGAFYMEDGKIVMQAD 242
D V E + L L +TH L Y D + DG+IV D
Sbjct: 176 DIDALKIVAEGINRLREPDRSF--LIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 3e-14
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 36/214 (16%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL--------- 84
I+ NLN +KQ L++ S +P + L+GP+GCGKST ++ L
Sbjct: 13 IKVENLNLWYGEKQ-----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 85 ---AGLLKPTNGHVY--------VKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTH 132
G + +Y +++ VFQ P+ P ++ +VA+G
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP---FPMSIYDNVAYGPRIHGANK 124
Query: 133 DEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
++ V AL + + S+ L+ P +LSGGQ+QR+ IA LA K++L DE T+
Sbjct: 125 KDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
LD + + + NL D T + VTH +++
Sbjct: 185 LDPISTARIEDLIMNLKKD---YTIVIVTHNMQQ 215
|
Length = 258 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-14
Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 26/204 (12%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------------RPKSFV 104
S V +G++ L+GPNG GKSTLL +AGLL P +G + R ++++
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164
Q MP V + + T + V S + + +A+G+ + L R V LSGG+
Sbjct: 75 SQQQTPPFAMP-VFQYLTLHQPDKTRT-EAVASALNEVAEALGLDDKLGRSVNQLSGGEW 132
Query: 165 QRVAIAGALAE-------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
QRV +A + + A ++LLLDE LD + Q ++ + + L G + + +
Sbjct: 133 QRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ-AALDRLLSELCQQG-IAVVMSS 190
Query: 218 HRLEE-LEYADGAFYMEDGKIVMQ 240
H L L +AD + ++ GK++
Sbjct: 191 HDLNHTLRHADRVWLLKQGKLLAS 214
|
Length = 248 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-14
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 38/214 (17%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------- 97
V +L+ S + +G++ ++G +G GKSTL+ +L L KPT+G V
Sbjct: 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
Query: 98 ---KRPK-SFVFQ--------NPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145
+R F+FQ V +P V A + + + + L
Sbjct: 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLE---------RKQRLLRAQELLQR 131
Query: 146 VGMSNYLQ-RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
+G+ + ++ +P Q LSGGQ+QRV+IA AL +V+L DE T LD V+ +
Sbjct: 132 LGLEDRVEYQPSQ-LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ- 189
Query: 205 LGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
L D G T + VTH + A+ + DG+IV
Sbjct: 190 LRDRGH-TVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 5e-14
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 33/212 (15%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL------------AGLLKPTNGHVY----- 96
L S +L L+GP+GCGKST L+ L G +K ++Y
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 97 ---VKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDE-VRSKVAKALDAVGM--- 148
+++ VFQ P P +V +VA+GL + E + +V ++L +
Sbjct: 80 LVELRKEVGMVFQQP---TPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 149 -SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ L R Q SGGQ+QR+ IA ALA KV+LLDE T+ LD + E + L
Sbjct: 137 TKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL--- 193
Query: 208 SGEVTALWVTHRLEEL-EYADGAFYMEDGKIV 238
+ T + VTH L++ +D ++ +G ++
Sbjct: 194 KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI 225
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 5e-14
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 44/237 (18%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKV------------LAGLLKPTNGHVYVKRPK 101
L+ S + + +GP+GCGKST L++ L G ++ ++Y K +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 102 --------SFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDE--VRSKVAKALDAVGM-- 148
VFQ P+ P ++ +VA+GL +N D +R +V + L +
Sbjct: 79 VDELRKNVGMVFQRPNP---FPKSIFENVAYGL-RVNGVKDNAFIRQRVEETLKGAALWD 134
Query: 149 --SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
+ L+ LSGGQ+QR+ IA A+A + VLL+DE + LD V E + L
Sbjct: 135 EVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-- 192
Query: 207 DSGEVTALWVTHRLEE---LEYADGAFYM-------EDGKIVMQADGVSILNFIKSR 253
+ T + VTH +++ + FYM + KI + + N+I R
Sbjct: 193 -KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNYITGR 248
|
Length = 250 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 5e-14
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L++ + + G++ + G G GK++LL ++ G L+P+ G + SF +
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISF---SSQFS 107
Query: 112 VVMP-TVEADVAFGLGNLNLTHDEVRSK-VAKAL----DAVGMSNYLQRPVQ----TLSG 161
+MP T++ ++ FG +++DE R K V KA D + TLSG
Sbjct: 108 WIMPGTIKENIIFG-----VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-VKNLLGDSGEVTALWVTHRL 220
GQ+ R+++A A+ + + LLD +LD + + E+ V L+ + T + VT ++
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANK---TRILVTSKM 219
Query: 221 EELEYADGAFYMEDG 235
E L+ AD + +G
Sbjct: 220 EHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 6e-14
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 37/216 (17%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
V L+ + +V G++ LLG NG GKSTL+KVL+G+ +PT G + + + + DH
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI---NNINYNKLDH 74
Query: 111 QVVMP----------------TVEADVAFG-------LGNLNLTHDEVRSKVAKALDAVG 147
++ TV ++ G G + E+R + A L VG
Sbjct: 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVG 134
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL--DESDQ-FGVIEAVKNL 204
+ L V LS KQ + IA L KV+++DE T+ L E D F ++ ++
Sbjct: 135 LKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK- 193
Query: 205 LGDSGEVTAL-WVTHRLEEL-EYADGAFYMEDGKIV 238
E TA+ +++H+L E+ D M+DG V
Sbjct: 194 -----EGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-14
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 48 RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN 107
R P+ F V +G+ ++ G NG GK+TLL+VLAGLL +G + + +
Sbjct: 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDR 80
Query: 108 PDHQVV---MPTVEADVAFGLGNLN----LTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160
+P ++AD++ L NL+ L + AL VG++ Y V+ LS
Sbjct: 81 SRFMAYLGHLPGLKADLS-TLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLS 139
Query: 161 GGQKQRVAIAGALAEACKVLLLDELTTFLD 190
GQK+R+A+A + LLDE LD
Sbjct: 140 AGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 7e-14
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 22/208 (10%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG---------------HVY 96
I + S +VP G++ ++GP+G GK+TLL+++ G + P +G +Y
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 97 VKRPK-SFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNYLQR 154
R + S +FQ+ M V +VA+ L + L + S V L+AVG+ +
Sbjct: 81 TVRKRMSMLFQSGALFTDM-NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL 139
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD-QFGVIEAVKNLLGDSGEVTA 213
LSGG +R A+A A+A +++ DE F+ + GV+ + + L + VT
Sbjct: 140 MPSELSGGMARRAALARAIALEPDLIMFDE--PFVGQDPITMGVLVKLISELNSALGVTC 197
Query: 214 LWVTHRLEE-LEYADGAFYMEDGKIVMQ 240
+ V+H + E L AD A+ + D KIV
Sbjct: 198 VVVSHDVPEVLSIADHAYIVADKKIVAH 225
|
Length = 269 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 9e-14
Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 38/236 (16%)
Query: 41 YSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--- 97
S+ R +V + + S V G+++ ++G +G GK+TL K++AG+L+PT+G V V
Sbjct: 290 ISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVG 346
Query: 98 -----------------KRPKSFVFQNPD---HQVVMPTVEADVAFGLGNLNLTHDEVRS 137
KR + Q D H+ V+ + + L L + R
Sbjct: 347 DEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG-----LELPDELARM 401
Query: 138 KVAKALDAVGMS-----NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192
K L VG L + LS G++ RVA+A L + ++++LDE T +D
Sbjct: 402 KAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461
Query: 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADGVSIL 247
+ V ++ + + T + V+H ++ L+ D A M DGKIV D I+
Sbjct: 462 TKVDVTHSILKAREEMEQ-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-13
Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 34/181 (18%)
Query: 69 LLGPNGCGKSTLLKVL--AGLLKPT---------NGH---------VYVKRPKSFVFQNP 108
L+GP+G GKSTLL+ + L P NGH V +++ VFQ P
Sbjct: 36 LIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95
Query: 109 DHQVVMP-TVEADVAFGLGNLNLTHDEVR--SKVAKALDAVGM----SNYLQRPVQTLSG 161
+ P ++ +V +GL L D+ V K+L + + L LSG
Sbjct: 96 NP---FPMSIYENVVYGL-RLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG 151
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221
GQ+QRV IA LA + K++LLDE T+ LD G IE LLG + T L VT ++
Sbjct: 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISA-GKIEE--TLLGLKDDYTMLLVTRSMQ 208
Query: 222 E 222
+
Sbjct: 209 Q 209
|
Length = 252 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 1e-13
Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 21/230 (9%)
Query: 41 YSITKKQ------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH 94
SIT R L P L +FS+P G L ++G GCGKS+LL L + GH
Sbjct: 635 NSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694
Query: 95 VYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD----AVGMSN 150
V++K ++V Q Q ++ ++ FG + +V A D G
Sbjct: 695 VHMKGSVAYVPQQAWIQ--NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210
+ LSGGQKQRV++A A+ + L D+ + +D + E V G
Sbjct: 753 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN 812
Query: 211 VTALWVTHRLEELEYADGAFYMEDGKI--------VMQADGVSILNFIKS 252
T + VTH + L D M GKI ++Q DG + F+++
Sbjct: 813 KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDG-AFAEFLRT 861
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-13
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 38/242 (15%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGH 94
N+S ++K V ++ + + Q+ ++GP+GCGK+TLL+ + + G
Sbjct: 8 NFSAYYGEKKAV---KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK 64
Query: 95 VYVK--------------RPK-SFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRSK 138
+Y K R K VFQ P P ++ +VAFG + +
Sbjct: 65 IYFKGQDIYDPQLDVTEYRKKVGMVFQKP---TPFPMSIYDNVAFGPRIHGVKSKHKLDR 121
Query: 139 -VAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193
V ++L + + L +P LSGGQ+QR+ IA ALA +V+LLDE T+ LD
Sbjct: 122 IVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPI- 180
Query: 194 QFGVIEAVKNLLGDSGE-VTALWVTHRL-EELEYADGAFYMEDGKIVMQADGVSILNFIK 251
+ ++ LL + E T + VTH + + + AD +M G+++ I+ K
Sbjct: 181 ---ATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPK 237
Query: 252 SR 253
++
Sbjct: 238 NK 239
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 2e-13
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 32/208 (15%)
Query: 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKV----------LAG 86
+NLN KKQ L D + + ++ L+G +GCGKST L+ + G
Sbjct: 6 TNLNLFYGKKQ-----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG 60
Query: 87 LLK-----PTNGHVYVKRPK-SFVFQNPDHQVVMPTVEADVAFG--LGNLNLTHDEVRSK 138
L++ N V R VFQ P+ V + ++ ++++ L + DE +
Sbjct: 61 LVEIEGKDVKNQDVVALRKNVGMVFQQPN--VFVKSIYENISYAPKLHGMIKNKDEEEAL 118
Query: 139 VAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
V L VG+ + L++ LSGGQ+QR+ IA ALA K+LLLDE T+ LD
Sbjct: 119 VVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISS 178
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEE 222
+ E +K L S ++ + VTH +++
Sbjct: 179 GVIEELLKEL---SHNLSMIMVTHNMQQ 203
|
Length = 246 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-13
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 32/172 (18%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ NL S K++ ++ D S V SG++ LLGPNG GK+T ++ GL++P +G
Sbjct: 5 LVAENLAKSYKKRK-----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 94 HVYVKRPKSFVFQN----PDHQ------VVMP---------TVEADV--AFGLGNLNLTH 132
+ + ++ P H+ +P TVE ++ + +L
Sbjct: 60 KILLDD------EDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK 113
Query: 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
E + ++ L+ +++ +LSGG+++RV IA ALA K +LLDE
Sbjct: 114 AERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDE 165
|
Length = 243 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-13
Identities = 74/260 (28%), Positives = 113/260 (43%), Gaps = 49/260 (18%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL------- 84
A+E NLN KQ L D S +P ++ +GP+GCGKSTLL+
Sbjct: 24 TALEVRNLNLFYGDKQ-----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV 78
Query: 85 -----AGLLKPTNGHVYVK--------RPKSFVFQNPDHQVVMP---TVEADVAFGLG-- 126
G ++ ++Y K R VFQ P+ P ++ +V +GL
Sbjct: 79 DNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN-----PFPKSIYENVVYGLRLQ 133
Query: 127 --NLNLTHDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180
N DE V ++L + + L LSGGQ+QR+ IA A+A +VL
Sbjct: 134 GINNRRVLDEA---VERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVL 190
Query: 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVM 239
LLDE T+ LD + E + L + T + VTH +++ +D +M GK+V
Sbjct: 191 LLDEPTSALDPISTLKIEELITEL---KSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247
Query: 240 QADGVSILNFIKSRQS-SYI 258
D ++ +Q+ YI
Sbjct: 248 YGDTDTLFTSPAKKQTEDYI 267
|
Length = 272 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 3e-13
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL----------------------AGLLKPT 91
L++ + V Q+ L+GP+GCGKST L+ +L P
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 92 NGHVYVKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEV-RSKVAKALDAVGM- 148
+ V+ S VFQ P+ P ++ +VA+GL + + +V AL +
Sbjct: 92 VDPIEVRMRISMVFQKPNP---FPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALW 148
Query: 149 ---SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205
+ L LSGGQ+QR+ IA ALA ++LL DE T+ LD + E + +L
Sbjct: 149 DEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL- 207
Query: 206 GDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILNFIKSR 253
+VT L VTH +++ +D YM G+++ G + FIK +
Sbjct: 208 --KNKVTILIVTHNMQQAARVSDYTAYMYMGELI--EFGATDTIFIKPK 252
|
Length = 265 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-13
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 46/202 (22%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKP---TNGHVYVK---------- 98
L+ + + Q+ L+GP+GCGKST L+ L + L P G V +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 99 ----RPK-SFVFQNPDHQVVMP---TVEADVAFGLGNLNLTHDEVRSK------VAKALD 144
R + VFQ P+ P ++ +VA+G TH ++ K V K+L
Sbjct: 79 VNQLRKRVGMVFQQPN-----PFPMSIYDNVAYG----PRTHG-IKDKKKLDEIVEKSLK 128
Query: 145 AVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
+ + L++ LSGGQ+QR+ IA ALA +VLL+DE T+ LD + E
Sbjct: 129 GAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 201 VKNLLGDSGEVTALWVTHRLEE 222
++ L D T + VTH +++
Sbjct: 189 IQELKKD---YTIVIVTHNMQQ 207
|
Length = 250 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-13
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 30/204 (14%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------KRPKSFV 104
S V +G++ L+GPNG GKSTLL +AG+ +G + R ++++
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77
Query: 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164
Q MP + L+ + A+ + + L R LSGG+
Sbjct: 78 SQQQTPPFAMPV------WHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 131
Query: 165 QRVAIAGALAE-------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
QRV +A + + A ++LLLDE LD + Q ++ + + L G + + +
Sbjct: 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ-SALDRLLSALCQQG-LAIVMSS 189
Query: 218 HRLEE-LEYADGAFYMEDGKIVMQ 240
H L L +A A+ ++ GK++
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLAS 213
|
Length = 248 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-13
Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 30/215 (13%)
Query: 47 QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-RPKSF-- 103
+R+ V ++ SF++ GQ ++G NG GKSTL K+LAG+++PT+G + + P F
Sbjct: 22 RRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81
Query: 104 ----------VFQNPD-----HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM 148
+FQ+P Q + + D L N +L ++ ++ + L VG+
Sbjct: 82 YSYRSQRIRMIFQDPSTSLNPRQRISQIL--DFPLRL-NTDLEPEQREKQIIETLRQVGL 138
Query: 149 ----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
++Y L+ GQKQR+ +A AL KV++ DE LD S + +I + L
Sbjct: 139 LPDHASYYP---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
Query: 205 LGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIV 238
G ++ ++VT L +++ +D M G++V
Sbjct: 196 QEKQG-ISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
Length = 267 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 5e-13
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 35/217 (16%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL-------- 84
AI+ +NL++ ++ IL S + ++ ++GP+GCGKST LK L
Sbjct: 7 AIKVNNLSFYYDTQK-----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES 61
Query: 85 ----AGLLKPTNGHVY--------VKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNL--- 128
G ++ N ++Y ++R S V P+ + P +V +VA+G+ +
Sbjct: 62 EVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN---LFPMSVYDNVAYGVKIVGWR 118
Query: 129 -NLTHDEVRSKVAKALDAVG-MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186
L D++ K D + + + + LSGGQ+QR+ IA ALA KVLL+DE
Sbjct: 119 PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223
LD V +++L S E+T + V+H L ++
Sbjct: 179 FGLDPIASMKVESLIQSLRLRS-ELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 5e-13
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 15/143 (10%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV----YVKRPKSFVFQNPDHQ 111
D SF +P G + ++GPNG GKSTL +++ G +P +G + VK ++V Q+ D
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKL--AYVDQSRDAL 397
Query: 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL----QRPVQTLSGGQKQRV 167
TV +++ GL + L EV S+ VG N+ Q+ V LSGG++ RV
Sbjct: 398 DPNKTVWEEISGGLDIIQLGKREVPSRA-----YVGRFNFKGSDQQKKVGQLSGGERNRV 452
Query: 168 AIAGALAEACKVLLLDELTTFLD 190
+A L VLLLDE T LD
Sbjct: 453 HLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 5e-13
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L+ SF +P+G L L G NG GK+TLLK++AGLL P G + +R Q+
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER------QSIKKD 68
Query: 112 VVMPTVEADVAF-----GLGNLNLT------HDEVRSKVAKALDAV----GMSNYLQRPV 156
+ T + + F G+ N LT +D S A + + + + + P
Sbjct: 69 --LCTYQKQLCFVGHRSGI-NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPC 125
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
LS GQK++VA+ K+ LLDE LDE +I ++ G V L
Sbjct: 126 GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV--LLT 183
Query: 217 THRLEELEYAD 227
+H+ L AD
Sbjct: 184 SHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-13
Identities = 59/198 (29%), Positives = 83/198 (41%), Gaps = 38/198 (19%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG------------------ 93
P R G++ +LGPNG GKST LK+LAG LKP G
Sbjct: 95 PTPRP-------GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGT 147
Query: 94 --HVYVKRPKSFVFQNPDHQVVMPT--VEADVAFGLGNLN--LTHDEVRSKVAKALDAVG 147
Y K+ + + V V+ G + L + R K + ++ +G
Sbjct: 148 ELQNYFKKLY-----EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLG 202
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ N L R V LSGG+ QRVAIA AL V DE +++LD + ++ L D
Sbjct: 203 LENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED 262
Query: 208 SGEVTALWVTHRLEELEY 225
V + V H L L+Y
Sbjct: 263 GKYV--IVVEHDLAVLDY 278
|
Length = 591 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 6e-13
Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 41/217 (18%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPT 91
IE NLN IL++ + +P + L+GP+GCGKST ++ L + L P
Sbjct: 4 IEVENLNTYFDDAH-----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPG 58
Query: 92 ---NGHVY---------------VKRPKSFVFQNPDHQVVMP-TVEADVAFGL---GNLN 129
GH+Y +++ VFQ P+ P ++ +VA+GL G +
Sbjct: 59 FRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP---FPKSIFDNVAYGLRIHGEDD 115
Query: 130 LTHDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185
D + +V ++L A + + L + LSGGQ+QR+ IA +A + +V+L+DE
Sbjct: 116 --EDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
+ LD + + + L D T + VTH +++
Sbjct: 174 CSALDPISTTKIEDLIHKLKED---YTIVIVTHNMQQ 207
|
Length = 250 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-13
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 38/222 (17%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ N+ +T L+ L SF VPSG ++ GPNGCGKS+L ++L L G
Sbjct: 452 IKFENIPL-VTPNGDVLIESL---SFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGG 507
Query: 94 HVYVKRPKS--FVFQNP-------DHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKAL 143
+ +V Q P Q++ P + E GL + +L + L
Sbjct: 508 RLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLE---------QIL 558
Query: 144 DAVGMSNYLQRPV---------QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
D V +++ L+R LSGG+KQR+A+A + +LDE T+ +
Sbjct: 559 DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV----S 614
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236
V + L + G +T V+HR +Y + YM DG+
Sbjct: 615 VDVEGYMYRLCREFG-ITLFSVSHRKSLWKYHEYLLYM-DGR 654
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-13
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 36/178 (20%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113
L++ S+P L ++ G +G GKSTL V GL R SF+ + ++++
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTL--VNEGLYA-----SGKARLISFLPKFSRNKLI 63
Query: 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY--LQRPVQTLSGGQKQRVAIAG 171
+ L + L VG+ Y L + + TLSGG+ QRV +A
Sbjct: 64 F----------IDQL------------QFLIDVGL-GYLTLGQKLSTLSGGELQRVKLAS 100
Query: 172 ALAEACK--VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227
L + +LDE +T L + D ++E +K L D G T + + H L+ L AD
Sbjct: 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG-LIDLG-NTVILIEHNLDVLSSAD 156
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 9e-13
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ L ++I +K L D S + + + G NGCGKS+LL+++AG+++P++G
Sbjct: 2 LSLHQLQFNIEQKN------LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG 55
Query: 94 HVYVKRPKSFVFQNP-----DHQVVMP---TVEADVAFGLGNLNLTHDEVRSKVAKALDA 145
++Y K P H + + TV ++ F N + A+
Sbjct: 56 NIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSA-----ETLYAAIHY 110
Query: 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205
+ + L +LS G ++ VAIA +A + LLDE+ T L + ++ + + NL+
Sbjct: 111 FKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR----DLLNNLI 166
Query: 206 ---GDSGEVTALWVTH 218
+SG + L +H
Sbjct: 167 VMKANSGGIV-LLSSH 181
|
Length = 195 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 65/225 (28%), Positives = 88/225 (39%), Gaps = 37/225 (16%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG-LLKPTNGHVYVKRPKSFVFQNPDHQ 111
ILRD S + G++ LLG NG GKSTLLK LAG L + P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 112 V----------VMPTV-EADVAFGLGNLNL------------THDEVRSKVAKALDAVGM 148
+ V+P + AF + L +AL G
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAE---------ACKVLLLDELTTFLDESDQFGVIE 199
+ + R V TLSGG+ RV A LA+ + LLLDE T LD + Q +++
Sbjct: 136 TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLD 195
Query: 200 AVKNLLGDSGEVTALWVTHRLE-ELEYADGAFYMEDGKIVMQADG 243
V+ L D + L + H +AD + DG IV A G
Sbjct: 196 TVRRLARD-WNLGVLAIVHDPNLAARHADRIAMLADGAIV--AHG 237
|
Length = 272 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 31/164 (18%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL------------AG--LLKPTNGH----- 94
L D S Q+ L+GP+GCGKST L+ L G LL N +
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 95 -VYVKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHD--EVRSKVAKALDAVGM-- 148
V ++R VFQ P+ P ++ +VA+GL +N D + +V ++L +
Sbjct: 82 VVELRRRVGMVFQKPNP---FPKSIFENVAYGL-RVNGVKDKAYLAERVERSLRHAALWD 137
Query: 149 --SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
+ L LSGGQ+QR+ IA ALA +VLL+DE + LD
Sbjct: 138 EVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
|
Length = 253 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 2e-12
Identities = 52/144 (36%), Positives = 79/144 (54%), Gaps = 17/144 (11%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV----YVKRPKSFVFQNPDHQ 111
D SFS+P G + ++GPNG GKSTL K++ G +P +G + VK ++V Q+ D
Sbjct: 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKL--AYVDQSRDAL 399
Query: 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA-VGMSNYL----QRPVQTLSGGQKQR 166
TV +++ GL + + + E+ S+ A VG N+ Q+ V LSGG++ R
Sbjct: 400 DPNKTVWEEISGGLDIIKVGNREIPSR------AYVGRFNFKGGDQQKKVGVLSGGERNR 453
Query: 167 VAIAGALAEACKVLLLDELTTFLD 190
+ +A L + VLLLDE T LD
Sbjct: 454 LHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-12
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 47 QRKLV-PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVF 105
QR + +LR+ + + G + ++G +G GK+TLL+++ G K Y RP S
Sbjct: 391 QRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKY--RPDSGKV 448
Query: 106 QNPDHQV-VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-------MSNYL-QRPV 156
+ P + V + E + FG + + +RSK AV L +R
Sbjct: 449 EVPKNTVSALIPGEYEPEFGEVTI---LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKF 505
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
LS GQK+R +A LAE VLL+DE LDE V + L ++G +T + V
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG-ITLIVV 564
Query: 217 THRLE 221
THR E
Sbjct: 565 THRPE 569
|
Length = 593 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-12
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 30/193 (15%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA---GLLK--PTNGHVY------------ 96
+RD + ++ +GP+GCGKST+L+ L L+K GHV+
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 97 ---VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
V+R VFQ P+ + ++ +VAFGL LN ++ +V AL + + ++
Sbjct: 84 PVVVRRYIGMVFQQPNPFSM--SIFDNVAFGL-RLNRYKGDLGDRVKHALQGAALWDEVK 140
Query: 154 RPVQ----TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209
++ +LSGGQ+QR+ IA A+A +VLLLDE + LD V E + L D
Sbjct: 141 DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-- 198
Query: 210 EVTALWVTHRLEE 222
T VTH +++
Sbjct: 199 -YTIALVTHNMQQ 210
|
Length = 261 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-12
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 18/214 (8%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E N+ ++ + PI + ++ G+L L+G NG GKSTL +L GL +P +G
Sbjct: 323 LELRNVRFAYQDNAFHVGPI----NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG 378
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
+ + Q D++ + V +D L + K L + +++
Sbjct: 379 EILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTS 438
Query: 154 ----RPVQT-LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV--KNLLG 206
R LS GQK+R+A+ AL E +L+LDE +DQ + LL
Sbjct: 439 LNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA-----ADQDPAFRREFYQVLLP 493
Query: 207 DSGEV--TALWVTHRLEELEYADGAFYMEDGKIV 238
E T ++H +AD M +G++
Sbjct: 494 LLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527
|
Length = 546 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-12
Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 37/215 (17%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL-------- 84
IE +LN +Q L D S +P Q+ ++GP+GCGKST L+ +
Sbjct: 39 VIEARDLNVFYGDEQ-----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLID 93
Query: 85 ----AGLLKPTNGHVY--------VKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLT 131
G L +VY ++R VFQ P+ P ++ +VA+GL
Sbjct: 94 AARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP---FPKSIYDNVAYGLKIQGYD 150
Query: 132 HDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187
D + +V ++L + + L LSGGQ+QR+ IA A+A +V+L+DE +
Sbjct: 151 GD-IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPAS 209
Query: 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
LD + + ++ L + E T + VTH +++
Sbjct: 210 ALDPVATSKIEDLIEEL---AEEYTVVIVTHNMQQ 241
|
Length = 285 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 34/185 (18%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LK 89
I+ NLN+ K L++ + + Q+ +GP+GCGKSTLL+ + L
Sbjct: 12 SKIQVRNLNFYYGKFH-----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY 66
Query: 90 P---TNGHVYVK--------------RPK-SFVFQNPDHQVVMP-TVEADVAFGLGNL-N 129
P G + + R K VFQ P P ++ ++AFG+
Sbjct: 67 PEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP---TPFPMSIYDNIAFGVRLFEK 123
Query: 130 LTHDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185
L+ E+ +V AL + N L + +LSGGQ+QR+ IA +A +VLLLDE
Sbjct: 124 LSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183
Query: 186 TTFLD 190
+ LD
Sbjct: 184 CSALD 188
|
Length = 260 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-12
Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 52/240 (21%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHV-----------YVKR 99
+L++ SF++ G++ +LG +G GKS L+ VL G+ +PT+G + YV+R
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 100 PKSFV-----------------FQNPDHQV---------VM----------PTVEADVAF 123
P S V F N ++ +M TV +V
Sbjct: 75 P-SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLE 133
Query: 124 GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183
L + E + ++ V +S+ + + LSGG+KQRV +A LA+ + L D
Sbjct: 134 ALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLAD 193
Query: 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242
E T LD V A++ + SG ++ + +H E +E +D A ++E+G+I +
Sbjct: 194 EPTGTLDPQTAKLVHNALEEAVKASG-ISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGT 252
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 4e-12
Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 38/198 (19%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL--------------------AGLLKPTNG 93
L++ + S+P ++ ++GP+GCGKST +K L + +LK
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 94 HVYVKRPKSFVFQ--NPDHQVVMPTVEADVAFG---LGNLNLTHDEVRSKVAKALDAVGM 148
V +++ VFQ NP Q + +VA+G G N +++ V K+L V +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFD----NVAYGPRIHGTKN--KKKLQEIVEKSLKDVAL 141
Query: 149 ----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
+ L +LSGGQ+QR+ IA ALA VLL+DE T+ LD + E + L
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 205 LGDSGEVTALWVTHRLEE 222
+ T + VTH +++
Sbjct: 202 ---KEKYTIVIVTHNMQQ 216
|
Length = 259 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-12
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 41/230 (17%)
Query: 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLK--------------- 82
NLN KQ IL D + + ++ +GP+GCGKST L+
Sbjct: 10 NLNLWYGSKQ-----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVK 64
Query: 83 ---VLAGL-LKPTNGHVYVKRPK-SFVFQNPDHQVVMP-TVEADVAFG--LGNLNLTHDE 134
+ G+ + + +V + R K VFQ P+ P ++ +VA+G L L +
Sbjct: 65 GELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP---FPKSIYDNVAYGPKLHGLAKNKKK 121
Query: 135 VRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
+ V K+L +VG+ + L+ LSGGQ+QR+ IA A+A +LL+DE + LD
Sbjct: 122 LDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181
Query: 191 ESDQFGVIEAVKNLLGD-SGEVTALWVTHRLEEL-EYADGAFYMEDGKIV 238
VIE NL+ + T + VTH +++ + +D + + G+IV
Sbjct: 182 PVAT-NVIE---NLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227
|
Length = 251 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 5e-12
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 29/209 (13%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKRPKSFVFQN 107
V L + S V +G++ L G NG GKSTL+KVL+G+ P G + + + N
Sbjct: 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFE-GEELQASN 75
Query: 108 PD----------HQVVMPTVEADVA---FGLGNLNLTH------DEVRSKVAKALDAVGM 148
HQ + E V F LGN +T D + + K L + +
Sbjct: 76 IRDTERAGIAIIHQELALVKELSVLENIF-LGN-EITPGGIMDYDAMYLRAQKLLAQLKL 133
Query: 149 SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
PV L GQ+Q V IA AL + ++L+LDE T L ES+ +++ +++L +
Sbjct: 134 DINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL--KA 191
Query: 209 GEVTALWVTHRLEEL-EYADGAFYMEDGK 236
+ ++++H+L E+ +D + DG+
Sbjct: 192 HGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-12
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 42/199 (21%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPT---NGHVY------------ 96
+++ +P Q+ +GP+GCGKST+L+ L L P G V
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 97 ---VKRPKSFVFQNPDHQVVMP-TVEADVAFGL------GNLNLTHDEV--RSKVAKAL- 143
V+R VFQ P+ P ++ ++A+G G++ DE+ RS AL
Sbjct: 86 PVEVRRRIGMVFQKPNP---FPKSIYDNIAYGARINGYKGDM----DELVERSLRQAALW 138
Query: 144 DAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203
D V + L++ +LSGGQ+QR+ IA A+A +V+L+DE + LD + E +
Sbjct: 139 DEV--KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE 196
Query: 204 LLGDSGEVTALWVTHRLEE 222
L + T + VTH +++
Sbjct: 197 L---KEQYTIIIVTHNMQQ 212
|
Length = 264 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 7e-12
Identities = 60/190 (31%), Positives = 82/190 (43%), Gaps = 49/190 (25%)
Query: 48 RKLVP----ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPK-- 101
K+VP IL+D S S G +LG NG GKSTLL+++AG+ K NG RP
Sbjct: 11 SKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA---RPAPG 67
Query: 102 ---SFVFQNP---DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK-------------- 141
++ Q P + V VE VA L+ +E+ +K A+
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALD-RFNEISAKFAEPDADMDALLAEQAE 126
Query: 142 ------ALDAVGMSNYLQR------------PVQTLSGGQKQRVAIAGALAEACKVLLLD 183
A DA + L+ V LSGG+++RVA+ L +LLLD
Sbjct: 127 LQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186
Query: 184 ELTTFLD-ES 192
E T LD ES
Sbjct: 187 EPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 7e-12
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 45/220 (20%)
Query: 33 AIECSNLN--YSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL------ 84
AI+ +L+ Y+ +K + S + ++ ++GP+GCGKST +K L
Sbjct: 7 AIKVKDLSFYYNTSKAIEGI-------SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59
Query: 85 ------AGLLKPTNGHVY--------VKRPKSFVFQNPDHQVVMPTVEADVAFGL----G 126
G++ ++Y ++R VFQ P+ + ++ +VA+G+
Sbjct: 60 EGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPM--SIYENVAYGVRISAK 117
Query: 127 NLNLTHDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182
DE+ V AL + + L + LSGGQ+QR+ IA ALA KVLL+
Sbjct: 118 LPQADLDEI---VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLM 174
Query: 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
DE + LD V E + +L E+T VTH +++
Sbjct: 175 DEPCSALDPIATMKVEELIHSL---RSELTIAIVTHNMQQ 211
|
Length = 259 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-12
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL------------AGLLKPTNGHVYVKRPK 101
L D +P + +GP+GCGKST L+ L G + +Y R
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 102 --------SFVFQNPDHQVVMP---TVEADVAFG--LGNLNLTHDEVRSKVAKALDAVGM 148
VFQ P+ P ++ +VA+G + L + E+ V +L G+
Sbjct: 95 VVELRARVGMVFQKPN-----PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGL 149
Query: 149 SN----YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
L P LSGGQ+QR+ IA A+A + +V+L+DE + LD
Sbjct: 150 WEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
|
Length = 267 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 41/198 (20%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH--------------------V 95
D + ++ + +GP+GCGKST+L+ L + + G V
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 96 YVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK------VAKALDAVGMS 149
V+R VFQ P+ M ++ +V GL LN VR+K V K+L +
Sbjct: 82 AVRRTIGMVFQRPNPFPTM-SIRDNVVAGL-KLN----GVRNKKDLDELVEKSLRGANLW 135
Query: 150 N----YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205
N L +P LSGGQ+QR+ IA A+A VLL+DE + LD A+++L+
Sbjct: 136 NEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL----AIEDLI 191
Query: 206 GD-SGEVTALWVTHRLEE 222
+ + T + VTH +++
Sbjct: 192 NELKQDYTIVIVTHNMQQ 209
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 1e-11
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189
L HD V + K VG SN LSGGQKQR++IA A+ K+L+LDE T+ L
Sbjct: 557 LIHDFVSALPDKYETLVG-SN-----ASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610
Query: 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234
D ++ V + + NL G+ +T + + HRL + YA+ F + +
Sbjct: 611 DNKSEYLVQKTINNLKGNENRITII-IAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-11
Identities = 61/212 (28%), Positives = 90/212 (42%), Gaps = 53/212 (25%)
Query: 44 TKKQRKLVPILR--DCSFSVPSGQLWM--------------LLGPNGCGKSTLLKVLAGL 87
T R PI+ D SF P G L ++GPNG GKST+LK+++G
Sbjct: 499 TPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE 558
Query: 88 LKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV-----------R 136
L+P++G V+ + K + H V L+L+ + +
Sbjct: 559 LQPSSGTVF-RSAKVRMAVFSQHHV-------------DGLDLSSNPLLYMMRCFPGVPE 604
Query: 137 SKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195
K+ L + G++ N +P+ TLSGGQK RVA A + +LLLDE + LD
Sbjct: 605 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664
Query: 196 GVIEAVKNLLGD-----------SGEVTALWV 216
+I+ + G SG V LWV
Sbjct: 665 ALIQGLVLFQGGVLMVSHDEHLISGSVDELWV 696
|
Length = 718 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-11
Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPT----------NGHVY----- 96
++D S P + ++GP+GCGKST+L+ + + L P+ + +Y
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 97 ---VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM----S 149
++R VFQ P+ M + +A N + E V +L V +
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 150 NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209
+ L+ LSGGQ+QR+ IA +A +V+L+DE + LD + E ++ L
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL---KE 196
Query: 210 EVTALWVTHRLEE 222
+ T + VTH +++
Sbjct: 197 KYTIIIVTHNMQQ 209
|
Length = 252 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 50 LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY------------- 96
L P+L++ SF V +G+ ++G G GKSTL+ L L+ G +
Sbjct: 20 LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED 79
Query: 97 VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD-AVGMSNYLQRP 155
++ + + Q+P + T+ + NL+ + ++ AL + G N
Sbjct: 80 LRSSLTIIPQDP--TLFSGTIRS-------NLDPFDEYSDEEIYGALRVSEGGLN----- 125
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215
LS GQ+Q + +A AL + +VL+LDE T +D + + + ++ +S T L
Sbjct: 126 ---LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS---TILT 179
Query: 216 VTHRLEELEYADGAFYMEDGKIV 238
+ HRL + D M+ G++
Sbjct: 180 IAHRLRTIIDYDKILVMDAGEVK 202
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 3e-11
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 37/198 (18%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLK------------------VLAG--LLKPTNG 93
+++ + V G + L+GP+GCGK+T L+ +L G + P
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 94 HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT----HDEVRSKVAKALDAVGM- 148
V ++R VFQ P+ M + VA L L D + ++L +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVA----GLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 149 ---SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205
+ L+ P LSGGQ+QR+ IA ALA ++LL+DE T+ LD + +++L+
Sbjct: 136 DEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST----ARIEDLM 191
Query: 206 GDSGEVTAL-WVTHRLEE 222
D +VT + VTH + +
Sbjct: 192 TDLKKVTTIIIVTHNMHQ 209
|
Length = 252 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-11
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 34/192 (17%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKPT------NGHVYV-----------KRPKSFVFQNPDHQ 111
+ G +G GK++L+ ++GL +P NG V KR +VFQ D +
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ--DAR 86
Query: 112 VVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169
+ P V ++ +G+ + ++ K + +G+ L R +LSGG+KQRVAI
Sbjct: 87 L-FPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAI 139
Query: 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA--LWVTHRLEE-LEYA 226
AL A ++LL+DE LD + ++ ++ L + E+ L+V+H L+E L A
Sbjct: 140 GRALLTAPELLLMDEPLASLDLPRKRELLPYLERL---AREINIPILYVSHSLDEILRLA 196
Query: 227 DGAFYMEDGKIV 238
D +E GK+
Sbjct: 197 DRVVVLEQGKVK 208
|
Length = 352 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 3e-11
Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKV------------LAGLLKPTNGHVY---- 96
+L++ + P Q+ ++GP+GCGKSTLL+ L G + N ++Y
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 97 ----VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGM--- 148
+++ VFQ P+ ++ +VAFG L T + V K+L +
Sbjct: 79 DVVNLRKRVGMVFQQPNP--FPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE 136
Query: 149 -SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ L + LSGGQ+QR+ IA LA +V+L+DE + LD + E ++ L
Sbjct: 137 VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL--- 193
Query: 208 SGEVTALWVTHRLEE 222
T VTH +++
Sbjct: 194 KQNYTIAIVTHNMQQ 208
|
Length = 251 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-11
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 54/240 (22%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLL------------ 81
+ NLN +K L D + S+P ++ L+GP+GCGKSTLL
Sbjct: 7 LSTKNLNLWYGEKH-----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG 61
Query: 82 -KVLAGLL---KPTNGH----VYVKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTH 132
++ +L + V ++R VFQ P+ P ++ +VA+G H
Sbjct: 62 CRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP---FPKSIYENVAYG----PRIH 114
Query: 133 DEVRSKVAKALDAV------------GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180
E K K LD + + + L +LSGGQ+QR+ IA LA +V+
Sbjct: 115 GE---KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVI 171
Query: 181 LLDELTTFLDESDQFGVIEAVKNLLGD-SGEVTALWVTHRLEELEYA-DGAFYMEDGKIV 238
L+DE + LD +++L+ D E T + VTH +++ D +M GK++
Sbjct: 172 LMDEPCSALDPI----ATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227
|
Length = 253 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 5e-11
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 52/214 (24%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL--------------------AGLLKPTNG 93
+++ +P G++ L+GP+GCGKST+L+ L L P
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 94 HVYVKRPKSFVFQNPDHQVVMP-TVEADVAFG------LGNLNLTHDE-VRSKVAKAL-- 143
V V+R VFQ P+ P ++ ++AFG G++ DE V + KA
Sbjct: 89 PVEVRRRIGMVFQQPNP---FPKSIYENIAFGARINGYTGDM----DELVERSLRKAAVW 141
Query: 144 ----DAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199
D + S Y +LSGGQ+QR+ IA +A +V+L+DE + LD + E
Sbjct: 142 DECKDKLNESGY------SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE 195
Query: 200 AVKNLLGDSGEVTALWVTHRLEE-LEYAD-GAFY 231
+ L T + VTH +++ + +D AF+
Sbjct: 196 TMHEL---KKNFTIVIVTHNMQQAVRVSDMTAFF 226
|
Length = 269 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 5e-11
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 40/165 (24%)
Query: 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA 122
G++ +++GP G GK+TL + LA L P G V + + +V
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY--------------IDGEDILEEVL 46
Query: 123 FGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182
L + + + + SG + R+A+A A VL+L
Sbjct: 47 DQLLLIIVGGKKA----------------------SGSGELRLRLALALARKLKPDVLIL 84
Query: 183 DELTTFLDESDQFGVIEAVKNLLGDS----GEVTALWVTHRLEEL 223
DE+T+ LD + ++ + L +T + T+ ++L
Sbjct: 85 DEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 6e-11
Identities = 69/256 (26%), Positives = 105/256 (41%), Gaps = 45/256 (17%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL--------- 84
I S+++ K + L+ ++ L+GP+GCGKST L+ L
Sbjct: 6 ITSSDVHLFYGKFE-----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60
Query: 85 -----------AGLLKPTNGHVYVKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTH 132
+ P V +++ VFQ P+ P ++ +V +GL L
Sbjct: 61 VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP---FPFSIYENVIYGL-RLAGVK 116
Query: 133 D--------EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
D E K A D V ++L +LSGGQ+QRV IA LA V+LLDE
Sbjct: 117 DKAVLDEAVETSLKQAAIWDEV--KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE 174
Query: 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243
T+ LD IE + LL + T + VTH + + +D + G ++ AD
Sbjct: 175 PTSALDPISS-TQIENM--LLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADT 231
Query: 244 VSI-LNFIKSRQSSYI 258
+ LN + YI
Sbjct: 232 KQMFLNPKEKETEDYI 247
|
Length = 252 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 6e-11
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 38/197 (19%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKV------------LAGLLKPTNGHVY----- 96
L D +P+ ++ +GP+GCGKSTLL+ + G L + ++Y
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 97 ---VKRPKSFVFQNPDHQVVMP-TVEADVAFG------LGNLN-LTHDEVRSKVAKALDA 145
++R VFQ P+ P ++ ++AF GNL+ L D +R A +
Sbjct: 96 SVKLRRQVGMVFQRPNP---FPKSIYENIAFAPRANGYKGNLDELVEDSLRR--AAIWEE 150
Query: 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205
V + L+ LSGGQ+QR+ IA A+A VLL+DE + LD V E L
Sbjct: 151 V--KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL- 207
Query: 206 GDSGEVTALWVTHRLEE 222
+ T + VTH +++
Sbjct: 208 --KEQYTIIMVTHNMQQ 222
|
Length = 274 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-11
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89
G + + ++R +L++ S G+L ++G +G GK+TL+ LA
Sbjct: 17 DGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP 76
Query: 90 P---------TNGHV----YVKRPKSFVFQNPDHQVVMPTVEADVAFG----LGNLNLTH 132
NG ++ ++V Q+ D + TV + F + +T
Sbjct: 77 KGVKGSGSVLLNGMPIDAKEMRAISAYVQQD-DLFIPTLTVREHLMFQAHLRMPR-RVTK 134
Query: 133 DEVRSKVAKALDAVGMSN----YLQRP--VQTLSGGQKQRVAIAGALAEACKVLLLDELT 186
E R +V + L A+G+ + P V+ LSGG+++R+A A L +L DE T
Sbjct: 135 KEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194
Query: 187 TFLDESDQFGVIEAVKNL 204
+ LD + V++ +K L
Sbjct: 195 SGLDSFMAYSVVQVLKGL 212
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 49/187 (26%)
Query: 37 SNLNYSI-TKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95
NLNY++ K ++ +L + S V G L L+G +G GK+TLL VLAG + T G +
Sbjct: 7 KNLNYTVPVKGGKR--QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVI 62
Query: 96 Y-------VKRPKSF------VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142
K+F V Q H + NLT VR
Sbjct: 63 TGEILINGRPLDKNFQRSTGYVEQQDVH----------------SPNLT---VR------ 97
Query: 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202
+A+ S L + LS Q++R+ I LA +L LDE T+ LD + ++ +K
Sbjct: 98 -EALRFSALL----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK 152
Query: 203 NLLGDSG 209
L DSG
Sbjct: 153 K-LADSG 158
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 41/255 (16%)
Query: 17 PHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCG 76
PHS D +++ + NLN + ++Q+K + +R+ SFS+ G+ ++G +G G
Sbjct: 2 PHS------DELDARDVLAVENLNIAFMQEQQK-IAAVRNLSFSLQRGETLAIVGESGSG 54
Query: 77 KSTLLKVLAGLLKPTNGHVYV------KRPKSFVFQNPDHQVVMPTVE-ADVA------- 122
KS L LL+ G V +R + + + M V AD+A
Sbjct: 55 KSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM 114
Query: 123 ------FGLG---------NLNLTHDEVRSKVAKALDAVGM---SNYLQRPVQTLSGGQK 164
F +G + + +E + + LD V + L R LSGG +
Sbjct: 115 TSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMR 174
Query: 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL- 223
QRV IA AL+ VL+ DE TT LD + Q +++ +K L + + +++TH + +
Sbjct: 175 QRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVA 233
Query: 224 EYADGAFYMEDGKIV 238
E AD M G+ V
Sbjct: 234 EIADRVLVMYQGEAV 248
|
Length = 623 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY----------------VKRPK 101
SF + G+ L+G +G GKST + L L++ G + ++R
Sbjct: 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI 403
Query: 102 SFVFQNP------DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-SNYLQR 154
F+FQ+P V +E GL L ++VA L+ VG+ + R
Sbjct: 404 QFIFQDPYASLDPRQTVGDSIMEPLRVHGL----LPGKAAAARVAWLLERVGLLPEHAWR 459
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
SGGQ+QR+ IA ALA KV++ DE + LD S + +I + +L D G + L
Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG-IAYL 518
Query: 215 WVTHRLEELE 224
+++H + +E
Sbjct: 519 FISHDMAVVE 528
|
Length = 623 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-10
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 29/211 (13%)
Query: 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-YVKRPKS----------- 102
RD SF + G++ ++G +G GKSTLL LAG L P +G Y+ R +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 103 ----------FVFQNPDHQVVMPTVEADVAFG--LGNLNLTH-DEVRSKVAKALDAVGMS 149
FV QNP + M V A G L + H +R+ L+ V +
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRM-RVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID 138
Query: 150 -NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208
+ + SGG +QR+ IA L +++ +DE T LD S Q +++ ++ L+ D
Sbjct: 139 PTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL 198
Query: 209 GEVTALWVTHRLEELE-YADGAFYMEDGKIV 238
G + + VTH L A M+ G++V
Sbjct: 199 G-LAVIIVTHDLGVARLLAQRLLVMQQGRVV 228
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-10
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 38/214 (17%)
Query: 50 LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK----------- 98
L P+L++ SFS+ G+ ++G G GKS+LL L L++ ++G + +
Sbjct: 16 LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD 75
Query: 99 -RPK-SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156
R + S + Q+P V+ + L DE ++ +AL+ VG+ +++
Sbjct: 76 LRSRISIIPQDP---VLF---SGTIRSNLDPFGEYSDE---ELWQALERVGLKEFVESLP 126
Query: 157 QTL-----------SGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNL 204
L S GQ+Q + +A AL K+L+LDE T +D E+D + + ++
Sbjct: 127 GGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL-IQKTIREA 185
Query: 205 LGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
D T L + HRL+ + +D ++ G++V
Sbjct: 186 FKDC---TVLTIAHRLDTIIDSDRILVLDKGRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 43/222 (19%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNGHVYVK-------- 98
P++ S ++ G++ L+G +G GKS G+L T G V +
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 99 ---RPKSFVFQNPD------HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS 149
R + + QNP H + E +A G + + AL+AVG+
Sbjct: 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK-------PADDATLTAALEAVGLE 128
Query: 150 N---YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
N L+ +SGG QR+ IA AL ++ DE TT LD Q +++ +++++
Sbjct: 129 NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQ 188
Query: 207 DSGEVTALWVTH------RLEELEYADGAFYMEDGKIVMQAD 242
+ L VTH RL AD M G+IV Q D
Sbjct: 189 KRA-LGMLLVTHDMGVVARL-----ADDVAVMSHGRIVEQGD 224
|
Length = 254 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-10
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 37/217 (17%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL------- 84
+ +E NLN +KQ L D + + ++ L+GP+GCGKST L+ L
Sbjct: 3 IKMESKNLNLWYGEKQ-----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 85 -----AGLLKPTNGHVY--------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131
G + ++Y +++ VFQ P+ + ++ +VA+G ++
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPM--SIYDNVAYG-PRIHGI 114
Query: 132 HD--EVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185
D E+ V AL + + L++ LSGGQ+QR+ IA +A V+L+DE
Sbjct: 115 KDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
T+ LD + + + L E T + VTH +++
Sbjct: 175 TSALDPISTLKIEDLMVEL---KKEYTIVIVTHNMQQ 208
|
Length = 251 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-10
Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 33/181 (18%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E +L S+ + + +L IL V G+ L+G +G GKSTLL +LAGL ++G
Sbjct: 7 VEVHHLKKSVGQGEHEL-SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG 65
Query: 94 HVYV-----------KRPK------SFVFQNPDHQVVMPTVEADVAFGLGNLNL------ 130
V + R K FVFQ+ +++PT+ A L N+ L
Sbjct: 66 EVSLVGQPLHQMDEEARAKLRAKHVGFVFQS---FMLIPTLNA-----LENVELPALLRG 117
Query: 131 -THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189
+ + R+ L+ +G+ L LSGG++QRVA+A A VL DE T L
Sbjct: 118 ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNL 177
Query: 190 D 190
D
Sbjct: 178 D 178
|
Length = 228 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 49/195 (25%), Positives = 73/195 (37%), Gaps = 34/195 (17%)
Query: 39 LNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA----GLLKPTNGH 94
+ K IL+ + G+L ++LG G G STLLK +A G G
Sbjct: 62 FRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 95 V---------YVKRPKSFVFQNPDHQVVMP--TVEADVAF-----GLGN--LNLTHDEVR 136
+ K + V N + V P TV + F N ++ +E
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 137 SKVAK-ALDAVGMS--------NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187
+A + G+S N R V SGG+++RV+IA A K+ D T
Sbjct: 182 KHIADVYMATYGLSHTRNTKVGNDFVRGV---SGGERKRVSIAEASLGGAKIQCWDNATR 238
Query: 188 FLDESDQFGVIEAVK 202
LD + I A+K
Sbjct: 239 GLDSATALEFIRALK 253
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-10
Identities = 72/261 (27%), Positives = 113/261 (43%), Gaps = 57/261 (21%)
Query: 46 KQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---------NGH-- 94
K+ KL IL+D S + ++ +LLGP GK+TLL LAG L P+ NG+
Sbjct: 174 KKTKLT-ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRL 232
Query: 95 -VYVKRPKS-FVFQNPDHQVVMPTVEADVAF-----GLGNLN--LTHDEVRSKVA----- 140
+V R S ++ QN H VM TV+ + F G+G L+ R K A
Sbjct: 233 NEFVPRKTSAYISQNDVHVGVM-TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPE 291
Query: 141 -------KALDAVGMSNYL--------------------QRPVQTLSGGQKQRVAIAGAL 173
KA G+ + L ++ +SGGQK+RV +
Sbjct: 292 AEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI 351
Query: 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL--WVTHRLEELEYADGAFY 231
K L +DE++T LD S + +++ ++ ++ + E T L + E + D
Sbjct: 352 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT-EATVLMSLLQPAPETFDLFDDIIL 410
Query: 232 MEDGKIVMQADGVSILNFIKS 252
+ +G+IV Q IL F +S
Sbjct: 411 LSEGQIVYQGPRDHILEFFES 431
|
Length = 1470 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-10
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 52/225 (23%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKPTNGHVYVK----------- 98
IL+ + S+ G++ ++GPNG GKSTL KV+AG K G + K
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 99 RPKSFV---FQNPDHQVVMPTVE-AD----------VAFGLGNLN-LTHDEVRSKVAKAL 143
R + FQ P + +P V AD GL L+ L E+ + + L
Sbjct: 81 RAHLGIFLAFQYP---IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEI---INEKL 134
Query: 144 DAVGMS-NYLQRPV-QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201
VGM ++L R V + SGG+K+R E ++ LLD LDE+D I+A+
Sbjct: 135 KLVGMDPSFLSRNVNEGFSGGEKKR-------NEILQMALLDSELAILDETDSGLDIDAL 187
Query: 202 K------NLLGDSGEVTALWVTHRLEELEY--ADGAFYMEDGKIV 238
K N L S + + +TH L+Y D M++GKI+
Sbjct: 188 KIIAEGINKLMTSEN-SIILITHYQRLLDYIKPDYVHVMQNGKII 231
|
Length = 252 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-10
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 37/216 (17%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-YVKRPKS-------- 102
P L + +F++ GQ+ + GP G GKSTLL ++ + G + + P +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 103 ----FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR--SKVAKALDAVGMSNYLQRP- 155
V Q P + TV ++A LG + T E+ +++A D + L+ P
Sbjct: 389 SRLAVVSQTP--FLFSDTVANNIA--LGRPDATQQEIEHVARLASVHDDI-----LRLPQ 439
Query: 156 -VQT--------LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
T LSGGQKQR++IA AL ++L+LD+ + +D + ++ NL
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQIL---HNLRQ 496
Query: 207 DSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242
T + HRL L A M+ G I + +
Sbjct: 497 WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-10
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 31/212 (14%)
Query: 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-YVKRPKS----------- 102
RD SF + G++ ++G +G GK+TLLK ++G L P G V Y R
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 103 ----------FVFQNPDHQVVMPTVEADVAFG--LGNLNLTH-DEVRSKVAKALDAV--G 147
FV QNP + M V A G L + H +R++ L+ V
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRM-QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID 141
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+ P +T SGG +QR+ IA L +++ +DE T LD S Q +++ ++ L+ +
Sbjct: 142 LDRIDDLP-RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200
Query: 208 SGEVTALWVTHRLEELEY-ADGAFYMEDGKIV 238
G + + VTH L AD M+ G++V
Sbjct: 201 LG-LAVVIVTHDLAVARLLADRLMVMKQGQVV 231
|
Length = 258 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 6e-10
Identities = 51/221 (23%), Positives = 85/221 (38%), Gaps = 23/221 (10%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+IE +++ + + L + G + ++G NGCGKSTL K+ GL P
Sbjct: 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396
Query: 93 GHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL 152
G + + D++ + + AD +L D + + YL
Sbjct: 397 GEILLDGAAVSADSRDDYRDLFSAIFAD-------FHLFDDLIGPDEGEHASLDNAQQYL 449
Query: 153 QR---------------PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197
QR LS GQ++R+A+ A E +LL DE D + +
Sbjct: 450 QRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFF 509
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
E + L G+ T + ++H + E AD + G IV
Sbjct: 510 YEELLPDLKRQGK-TIIIISHDDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 34/200 (17%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL----------------LKPTNGH 94
V L V G+ L G NG GKSTL+K+L+G+ LK + +
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKAS--N 71
Query: 95 VYVKRPKSFVFQNPDHQVVMPTVEADVA--FGLGNLNLTH-------DEVRSKVAKALDA 145
+ V HQ + E VA LGN +T + + + L
Sbjct: 72 IRDTERAGIVII---HQELTLVPELSVAENIFLGN-EITLPGGRMAYNAMYLRAKNLLRE 127
Query: 146 VGMSNY-LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
+ + + RPV GGQ+Q V IA AL + ++L+LDE ++ L E + +++ +++L
Sbjct: 128 LQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 205 LGDSGEVTALWVTHRLEELE 224
+ V ++++H+L E++
Sbjct: 188 --KAHGVACVYISHKLNEVK 205
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 1e-09
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLK---VLAGLLKPT 91
E N N+ + + +L D + + ++ +GP+GCGKST L+ L L++ T
Sbjct: 82 EIRNFNFWYMNRTKH---VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT 138
Query: 92 N--GHVYV----KRPKS-----------FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDE 134
+ G +Y R K VFQ P + ++ +VA+G N + +
Sbjct: 139 SHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEM--SIFDNVAYGPRNNGINDRK 196
Query: 135 VRSK-VAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189
+ K V K+L + + + L + LSGGQ+QR+ IA A+A +VLL+DE T+ L
Sbjct: 197 ILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSAL 256
Query: 190 D 190
D
Sbjct: 257 D 257
|
Length = 329 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 1e-09
Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 37/217 (17%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
IE NLN T + L + + + + L+GP+GCGKST L+ L +
Sbjct: 6 AIIETENLNLFYTDFK-----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLV 60
Query: 92 NG------------HVY--------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131
G ++Y ++R VFQ P+ + ++ ++++G ++ T
Sbjct: 61 EGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP--FLMSIYDNISYG-PKIHGT 117
Query: 132 HDEVR--SKVAKALDAVGMSN----YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185
D+ + V ++L + N L +LSGGQ+QR+ IA LA V+L+DE
Sbjct: 118 KDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
T+ LD + E + NL T + VTH +++
Sbjct: 178 TSALDPISTGKIEELIINL---KESYTIIIVTHNMQQ 211
|
Length = 254 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 63/233 (27%), Positives = 96/233 (41%), Gaps = 71/233 (30%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-YVKRPKS---------- 102
RD SF + G++ ++G +G GK+TLL L+ L P G V Y R
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 103 -----------FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY 151
FV Q+P + M V+ G GN + + L AVG +Y
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRM-----QVSAG-GN-----------IGERLMAVGARHY 124
Query: 152 ----------LQR-----------PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
L+R P T SGG +QR+ IA L +++ +DE T LD
Sbjct: 125 GDIRATAGDWLERVEIDAARIDDLP-TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTH-----RLEELEYADGAFYMEDGKIV 238
S Q +++ ++ L+ + G + + VTH RL A M+ G++V
Sbjct: 184 VSVQARLLDLLRGLVRELG-LAVVIVTHDLAVARL----LAHRLLVMKQGRVV 231
|
Length = 258 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 52/170 (30%)
Query: 71 GPNGCGKSTLLKVLAGLLKPTNGHVY----------------VKRPKSFVFQNPDHQVVM 114
G +GCGKST + + GL+K T+G V V+ +FQ+P
Sbjct: 54 GESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP------ 107
Query: 115 PTVEADVAFGLGNLN-------------------LTHDEVRSKVAKALDAVGM-SNYLQR 154
L +LN L+ EV+ +V + VG+ N + R
Sbjct: 108 ----------LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR 157
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
SGGQ QR+ IA AL K+++ DE + LD S Q V+ ++ L
Sbjct: 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207
|
Length = 331 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 46/246 (18%)
Query: 40 NYSIT-KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKS-TLLKVLAGLLKPTNGHVYV 97
N S+ ++Q+ + ++ D S + +G+ L+G +G GKS T L +L L P+ VY
Sbjct: 10 NLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILR--LLPSPPVVYP 67
Query: 98 KRPKSF-----------------------VFQ------NPDHQVVMPTVEADVAFGLG-N 127
F +FQ NP H T+E + L +
Sbjct: 68 SGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH-----TLEKQLYEVLSLH 122
Query: 128 LNLTHDEVRSKVAKALDAVGMSNYLQR----PVQTLSGGQKQRVAIAGALAEACKVLLLD 183
+ + R ++ LD VG+ +R P Q LSGG++QRV IA AL ++L+ D
Sbjct: 123 RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQ-LSGGERQRVMIAMALLTRPELLIAD 181
Query: 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242
E TT LD S Q +++ ++ L + + L++TH L + + AD M++G+ V Q
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELN-MGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
Query: 243 GVSILN 248
++ +
Sbjct: 241 AATLFS 246
|
Length = 529 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112
+L + + ++ GQ L+G NGCGKSTLL +L + G + N +
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 113 V-MPTVE----ADVAF-----GLGNLNLTHD-----------------EVRSKVAKALDA 145
+ P +E D + L + N +D +RS+ A L
Sbjct: 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHG 135
Query: 146 VGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
+G SN L+RPV SGG + R+ +A AL +LLLDE T LD
Sbjct: 136 LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 3e-09
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY---------------- 96
+L S P+ + L+GP G GK+T L+ L + +G+ Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 97 ---VKRPKSFVFQ--NPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY 151
+R +FQ NP +M V A V + + E R L VG+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVR---AHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 152 LQRPVQT----LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
++ + LSGGQ+Q + +A LA +VLLLDE T+ LD + + E +++L
Sbjct: 153 VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL--- 209
Query: 208 SGEVTALWVTHRL-EELEYADGAFYMEDGKIVMQA 241
+ +T + VTH L + +D A DG++V +
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEG 244
|
Length = 276 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 40/234 (17%)
Query: 40 NYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99
N + K R++V D S +V SG++ LLGPNG GK+T ++ G++ G++ +
Sbjct: 8 NLAKAYKGRRVV---EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID- 63
Query: 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL------------------------NLTHDEV 135
D + + + A G+G L +L+ ++
Sbjct: 64 ---------DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR 114
Query: 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195
+ + ++ + + Q+LSGG+++RV IA ALA K +LLDE +D
Sbjct: 115 EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174
Query: 196 GVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
+ +++L DSG + L H + E L + A+ + G ++ IL
Sbjct: 175 DIKRIIEHLR-DSG-LGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 32/229 (13%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKP- 90
+E +L+ +K+ + D S + + L+GP+GCGKST L+ + + L P
Sbjct: 22 LEVKDLSIYYGEKR-----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPS 76
Query: 91 --TNGH---------------VYVKRPKSFVFQNPD---HQVVMPTVEADVAFGLGNLNL 130
+ G V ++R VFQ P+ + A G ++
Sbjct: 77 ARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSV 136
Query: 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
+ V + KA + + L +LSGGQ+QR+ IA LA VLLLDE + LD
Sbjct: 137 LDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIV 238
IE + + E + + VTH +++ L +D + +G +V
Sbjct: 197 PISN-AKIEEL--ITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242
|
Length = 268 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 4e-09
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192
DE R K+ + ++ +G+ N L R + LSGG+ QRVAIA AL DE T++LD
Sbjct: 188 DE-RGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR 246
Query: 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-AD 227
+ V ++ L L V H L L+Y AD
Sbjct: 247 QRLNVARLIRELAEGK---YVLVVEHDLAVLDYLAD 279
|
Length = 590 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-09
Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113
L + SF VP G++ ++G NG GKSTL ++AG+ P G V +K + + +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173
+ +E GL + LT ++++ + + ++ + ++ +PV+T S G K R+ A ++
Sbjct: 100 LTGIENIELKGL-MMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISV 158
Query: 174 AEACKVLLLDELTTFLDES 192
+L++DE + D++
Sbjct: 159 HINPDILVIDEALSVGDQT 177
|
Length = 549 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 4e-09
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 65 QLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----KRPKSFVFQN----PDHQVVMP 115
Q+ LG NG GK+T L +L GLL PT+G V V + V Q+ P H ++
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH 1016
Query: 116 --TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173
TV + F + +E + ++ L+ G+ + Q LSGG ++++++A A
Sbjct: 1017 HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF 1076
Query: 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
KV++LDE T+ +D + + + LL T + TH ++E
Sbjct: 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDL---LLKYRSGRTIIMSTHHMDE 1122
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-09
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 38/204 (18%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL--------------------AGLLKPTNG 93
L+ S +P + L+GP+GCGKST L+ L + +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 94 HVYVKRPKSFVFQNP--------DHQVVMPTVEADVAFGLGNLNLTHDE---VRSKVAKA 142
V +++ VFQ+P ++ P D+ GL L D+ V ++
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 143 LDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
L + ++ L LSGGQ+QR+ IA LA +V+L+DE + LD +
Sbjct: 181 LRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240
Query: 199 EAVKNLLGDSGEVTALWVTHRLEE 222
+ ++ L + E T + VTH +++
Sbjct: 241 DLIEEL---AEEYTVVVVTHNMQQ 261
|
Length = 305 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 32/210 (15%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPD- 109
V L + +V G++ L+G NG GKST++KVL G+ G + + K F P
Sbjct: 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPKS 75
Query: 110 ---------HQV--VMP--TVEADVAFG------LGNLNLTHDEVRSKVAKALDAVGMSN 150
HQ ++P T+ ++ G G ++ ++ ++ K L + +
Sbjct: 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRID--WKKMYAEADKLLARLNLRF 133
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ---FGVIEAVKNLLGD 207
+ V LS G++Q V IA L+ KV+++DE T L +++ F VI L
Sbjct: 134 SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI----RELKS 189
Query: 208 SGEVTALWVTHRLEEL-EYADGAFYMEDGK 236
G ++++HRL+E+ E D DG+
Sbjct: 190 QG-RGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-09
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 32/180 (17%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+ ++ + + +G+ ++G NG GK+TLL+ L G L+P +G V + + DH
Sbjct: 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDH- 391
Query: 112 VVMPTVEADVAFGLGNLNLT----------HDE--VRSKVAKALDAVGMSNYLQRPVQTL 159
D +L L DE VR + + L + + +++ V+ L
Sbjct: 392 ------AYDFE---NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS---QDDIKKSVKVL 439
Query: 160 SGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTH 218
SGG+K R+ + + VL++DE T +D ES IE++ L + E T ++V+H
Sbjct: 440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES-----IESLNMAL-EKYEGTLIFVSH 493
|
Length = 530 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 1e-08
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216
++LSGGQKQR+AIA AL K+LLLDE T+ LD S+ +IE + D + T + +
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLD-SNSEKLIEKTIVDIKDKADKTIITI 1415
Query: 217 THRLEELEYAD 227
HR+ ++ +D
Sbjct: 1416 AHRIASIKRSD 1426
|
Length = 1466 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-08
Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 35/201 (17%)
Query: 69 LLGPNGCGKSTLLKVLAGL--LKP---TNG---------------HVYVKRPKSFVFQNP 108
++GP+GCGKST L+ + + L P T G V +++ VFQ P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 109 DHQVVMP-TVEADVAFGLGNLNLTHDE------VRSKVAKALDAVGMSNYLQRPVQTLSG 161
+ P ++ ++A+G L+ +D+ V + KA +S+ L + LSG
Sbjct: 130 NP---FPKSIFDNIAYG-PRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG 185
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221
GQ+QR+ +A LA ++LLLDE T+ LD + + ++ L G T + VTH ++
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL---RGSYTIMIVTHNMQ 242
Query: 222 EL-EYADGAFYMEDGKIVMQA 241
+ +D + +G +V A
Sbjct: 243 QASRVSDYTMFFYEGVLVEHA 263
|
Length = 286 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 23/173 (13%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY---------------- 96
++++ SF++ G+ L+G +G GKST L L+ + G ++
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 97 VKRPKSFVFQNPDHQVVMP--TVEADVAFGLG--NLNLTHDEVRSKVAKALDAVGMSNYL 152
V+ VFQ+P + + P V + GL L+ + +V ++ VG+
Sbjct: 360 VRHRIQVVFQDP-NSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET 418
Query: 153 -QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
R SGGQ+QR+AIA AL +++LDE T+ LD++ Q ++ +K+L
Sbjct: 419 RHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471
|
Length = 529 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 32/195 (16%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKRPKSF----- 103
L++ + + ++ ++GP+GCGKST +K L +++ T G + + F
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 104 ----------VFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVA-KALDAVGMSNY 151
VFQ P+ P ++ +V +G + + ++ K+L + +
Sbjct: 100 VEELRTNVGMVFQKPNP---FPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE 156
Query: 152 LQRPVQT----LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
L+ + LSGGQ+QR+ IA LA V+L+DE T+ LD V E V+ L D
Sbjct: 157 LKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD 216
Query: 208 SGEVTALWVTHRLEE 222
+ + VTH +++
Sbjct: 217 ---YSIIIVTHNMQQ 228
|
Length = 271 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 2e-08
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 23/187 (12%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113
+RD SF V +G++ + G G G++ L + L GL P +G + + V
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLD----------GKPVT 65
Query: 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173
+ + G+ + E R + LD N LSGG +Q+V +A L
Sbjct: 66 RRSPRDAIRAGIAYVP----EDRKREGLVLDLSVAENIALS--SLLSGGNQQKVVLARWL 119
Query: 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE--VTALWVTHRLEEL-EYADGAF 230
A +VL+LDE T +D G + L+ + + L ++ L+EL D
Sbjct: 120 ARDPRVLILDEPTRGVD----VGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRIL 175
Query: 231 YMEDGKI 237
M +G+I
Sbjct: 176 VMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 21/213 (9%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN--- 107
+ L + S + G++ L+G NG GK+TLL L G + T+G + +Q
Sbjct: 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77
Query: 108 --------PDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
P+ + V TVE ++A +G D+ + ++ + +R +Q
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLA--MGGFFAERDQFQERIKWVYEL--FPRLHERRIQ 133
Query: 158 ---TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
T+SGG++Q +AI AL ++LLLDE + L + + ++ L + G L
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR-EQGMTIFL 192
Query: 215 WVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247
+ + L+ AD + +E+G +V++ G ++L
Sbjct: 193 VEQNANQALKLADRGYVLENGHVVLEDTGDALL 225
|
Length = 237 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 47/225 (20%)
Query: 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL---- 84
E +A+ +L+ KK+ ++ ++ L+GP+G GKST L+ L
Sbjct: 16 EEEIALSTKDLHVYYGKKEA-----IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70
Query: 85 --------------AGL-LKPTNGHVY-VKRPKSFVFQNPDHQVVMP---TVEADVAFGL 125
G+ + +VY +++ VFQ P+ P ++ ++ F L
Sbjct: 71 DTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN-----PFAKSIYENITFAL 125
Query: 126 GNLNLTH----DEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEAC 177
+ DE+ V +L + + L + TLSGGQ+QR+ IA A+A
Sbjct: 126 ERAGVKDKKVLDEI---VETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKP 182
Query: 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222
+LL+DE + LD + E + L + T + VTH +++
Sbjct: 183 DILLMDEPASALDPISTMQLEETMFELKKN---YTIIIVTHNMQQ 224
|
Length = 267 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
TLSGGQ+QR+A+A AL +++LDE + LD + + A+ + T + +
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA--KARGGTVVVIA 529
Query: 218 HRLEELEYADGAFYMEDGKIVM 239
HR L D ++DG+I
Sbjct: 530 HRPSALASVDKILVLQDGRIAA 551
|
Length = 580 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 43/198 (21%)
Query: 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPKSF------VF----- 105
G+L L+G NG GKSTL +L GL +P +G + + ++P+ + VF
Sbjct: 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHL 408
Query: 106 ----QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSG 161
P+ + P A V L L + H ++ + + + L+ LS
Sbjct: 409 FDQLLGPEGKPANP---ALVEKWLERLKMAH-KLELEDGRISN-------LK-----LSK 452
Query: 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI--EAVKNLLGDSGEVTALWVTHR 219
GQK+R+A+ ALAE +LLLDE D+ F + + LL + G+ T ++H
Sbjct: 453 GQKKRLALLLALAEERDILLLDEWAA--DQDPHFRREFYQVLLPLLQEMGK-TIFAISHD 509
Query: 220 LEELEYADGAFYMEDGKI 237
+AD M +G++
Sbjct: 510 DHYFIHADRLLEMRNGQL 527
|
Length = 547 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 27/218 (12%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-T 91
AI N +S K + P L + + VP G L ++G G GK++L+ + G L P +
Sbjct: 614 AISIKNGYFSWDSKAER--PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS 671
Query: 92 NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY 151
+ V ++ ++V Q + TV ++ FG D R + +A+D + +
Sbjct: 672 DASVVIRGTVAYVPQVS--WIFNATVRDNILFGS-----PFDPERYE--RAIDVTALQHD 722
Query: 152 LQ------------RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199
L R V +SGGQKQRV++A A+ V + D+ + LD V +
Sbjct: 723 LDLLPGGDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781
Query: 200 AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
K + + T + VT++L L D + +G I
Sbjct: 782 --KCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817
|
Length = 1622 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-------HVYVKRPK-- 101
V L + + V + L+G NG GKSTLLK L G+ + +G + K K
Sbjct: 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEA 70
Query: 102 -----SFVFQNPDHQVVMPTVEADVAFG---LGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
S V Q + V+ +V ++ G + + D++ D + + +
Sbjct: 71 LENGISMVHQELN-LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR 129
Query: 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD---QFGVIEAVKNLLGDSGE 210
V TLS Q Q + IA A + K++++DE T+ L E + F +I +K + G
Sbjct: 130 AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK----ERG- 184
Query: 211 VTALWVTHRLEEL-EYADGAFYMEDGKIV 238
++++H++EE+ + D + DG+ +
Sbjct: 185 CGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 8e-08
Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PKS 102
R+ S V +G++ L G G G++ L + L GL G + + +
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339
Query: 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV-----RSKVAKALD----AVGMS-NYL 152
V+ D Q ++A +A+ + LTH+ ++ L+ A+ + N+
Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNV--CALTHNRRGFWIKPARENAVLERYRRALNIKFNHA 397
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212
++ +TLSGG +Q+V IA L + ++L++DE T +D S + + + ++++ + V
Sbjct: 398 EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN--VA 455
Query: 213 ALWVTHRLEELE-YADGAFYMEDGKI 237
L+++ LEE+E AD M G+I
Sbjct: 456 VLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 48/195 (24%), Positives = 69/195 (35%), Gaps = 56/195 (28%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLK----VLAGLLKPTNGHVYV 97
I + + D +F G L ++ GPNG GKST+L L G T V
Sbjct: 1 KIVLGRFPSYFVPNDVTF--GEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGV 58
Query: 98 KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQ 157
K V V A++ F
Sbjct: 59 K---------AGCIV--AAVSAELIFTRL------------------------------- 76
Query: 158 TLSGGQKQRVAIAGALAEA----CKVLLLDELTTFLDESDQFGVIEAVK-NLLGDSGEVT 212
LSGG+K+ A+A LA A + +LDE+ LD D + EA+ +L+ +
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGA---Q 133
Query: 213 ALWVTHRLEELEYAD 227
+ +TH E E AD
Sbjct: 134 VIVITHLPELAELAD 148
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-07
Identities = 63/210 (30%), Positives = 89/210 (42%), Gaps = 20/210 (9%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--RPKSFVFQNPDH 110
+L+D SFSV GQ LLG G GKSTLL L LL T G + + S Q
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292
Query: 111 QVVMPTVEADVAFGLGNLNLTHDEVRS--KVAKALDAVGMSNYL-QRPVQ---------- 157
+ + + G NL E S ++ K + VG+ + + Q P +
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352
Query: 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
LS G KQ + +A ++ K+LLLDE + LD +I K L T +
Sbjct: 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV-TLQIIR--KTLKQSFSNCTVILSE 1409
Query: 218 HRLEELEYADGAFYMEDGKIVMQADGVSIL 247
HR+E L F + +G V Q D + L
Sbjct: 1410 HRVEALLECQ-QFLVIEGSSVKQYDSIQKL 1438
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV--MPTVE 118
V G+ + LLG NG GK+T K+L G T+G V + HQ + P +
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021
Query: 119 A--DVAFGLGNLNL-------THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169
A D+ G +L L +E+ ++ ++G+S Y R T SGG K++++
Sbjct: 2022 AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081
Query: 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224
A AL ++LLDE TT +D + + + +++ + V + +H +EE E
Sbjct: 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAV--VLTSHSMEECE 2134
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-07
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 29/219 (13%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT- 91
AI N +S K K P L D + +P G L ++G G GK++L+ + G L
Sbjct: 614 AISIKNGYFSWDSKTSK--PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE 671
Query: 92 NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY 151
V ++ ++V Q + TV ++ FG D + +A+D + +
Sbjct: 672 TSSVVIRGSVAYVPQVS--WIFNATVRENILFG-------SDFESERYWRAIDVTALQHD 722
Query: 152 L------------QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199
L +R V +SGGQKQRV++A A+ + + D+ + LD V +
Sbjct: 723 LDLLPGRDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 200 A-VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237
+ +K+ L T + VT++L L D + +G I
Sbjct: 782 SCMKDELKGK---TRVLVTNQLHFLPLMDRIILVSEGMI 817
|
Length = 1495 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95
PIL+ SF++ +G+ ++GP+G GKSTL ++L G+ PT+G V
Sbjct: 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393
|
Length = 580 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 6e-07
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LSGG+ QRVAIA AL L DE + +LD + A++ L + G+ TAL V H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS-EEGKKTALVVEH 130
Query: 219 RLEELEY-AD--GAFYMEDGK 236
L L+Y +D F E G
Sbjct: 131 DLAVLDYLSDRIHVFEGEPGV 151
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 7e-07
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 152 LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD---ESDQFGVIEAVKNLLGDS 208
++P+ TLSGG +Q+V +A LA KVL+LDE T +D +++ + +I L
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE----LAAE 450
Query: 209 GEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246
G L ++ L EL +D M +G+IV + D
Sbjct: 451 G-KAILMISSELPELLGLSDRILVMREGRIVGELDREEA 488
|
Length = 500 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 125 LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA-------- 176
L +L +R L V RP++TLSGG++ ++A LA +
Sbjct: 782 LNRYDLRRLTIRKDGNGGLVVVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRAR 841
Query: 177 CKVLLLDELTTFLDES--DQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYAD 227
++L LDE LDE ++ + E ++ LL D ++ + ++H +EEL E AD
Sbjct: 842 LELLFLDEPFGTLDEERLEK--LAEILEELLSDGRQI--IIISH-VEELKERAD 890
|
Length = 908 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-07
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 50/225 (22%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY---------------- 96
+L + SFS+ GQ LLG G GKSTLL LL T G +
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77
Query: 97 ---VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL- 152
V K F+F + + P +G + DE KVA + VG+ + +
Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDP-------YGKWS-----DEEIWKVA---EEVGLKSVIE 122
Query: 153 QRPVQ----------TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202
Q P Q LS G KQ + +A ++ K+LLLDE + LD + VI K
Sbjct: 123 QFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPI-TYQVIR--K 179
Query: 203 NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247
L + T + HR+E + +E+ K V Q D + L
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENK-VRQYDSIQKL 223
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 48 RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
RK V I +D +F++ G+ + +G +GCGKST+LK++ L PT G + +
Sbjct: 395 RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444
|
Length = 1466 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 41 YSITKKQRKLVP----ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
Y++ + K+VP IL+D S S G +LG NG GKSTLL+++AG+ K G
Sbjct: 7 YTM-NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG 62
|
Length = 556 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKPTNGHV 95
L+G NGCGKST +K+L G L+P+ G+V
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNV 58
|
Length = 530 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-06
Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 37/178 (20%)
Query: 71 GPNGCGKSTLLK----VLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLG 126
G NG GK+T+++ L G L P + + + V A V
Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDP--KLIREG--------EVRAQV----- 73
Query: 127 NLNLTHD-----EVRSKVAKALDAV----GMSNY-LQRPVQTLSGGQKQ------RVAIA 170
L + + +A + + G SN+ L SGG+K R+A+A
Sbjct: 74 KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALA 133
Query: 171 GALAEACKVLLLDELTTFLDESD-QFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227
C +L LDE TT LDE + + + E ++ + +TH E ++ AD
Sbjct: 134 ETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF-QLIVITHDEELVDAAD 190
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86
PIL + S+ V G+ W ++GPNG GKSTLL ++ G
Sbjct: 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
Length = 490 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 32/157 (20%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV---- 113
+ V ++ L+GPNG GK+T+ L G KPT G + + R + P HQ+
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI-LLRGQHIEGL-PGHQIARMGV 82
Query: 114 ------------MPTVE-----------ADVAFGLGNLNLTHDEVRSKVAKA---LDAVG 147
M +E + GL + +A L+ VG
Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG 142
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
+ + R L+ GQ++R+ IA + ++L+LDE
Sbjct: 143 LLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
Length = 255 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-06
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKPTNGHV-YVKRPKSFVFQNPDHQVVMPTVEADVAFGLGN 127
LLG NG GKSTL+K+LAG L P +G + K K F HQ + + AD + L +
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQ--HQ--LEFLRADES-PLQH 397
Query: 128 L-NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185
L L E+ K+ L G + + + SGG+K R+ +A + + +LLLDE
Sbjct: 398 LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457
Query: 186 TTFLD 190
T LD
Sbjct: 458 TNHLD 462
|
Length = 638 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-06
Identities = 65/245 (26%), Positives = 99/245 (40%), Gaps = 61/245 (24%)
Query: 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHV 95
+L+ S+ K ILR + V G++ ++GPNG GKSTL LAG + T G V
Sbjct: 6 DLHVSVEDK-----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 96 YVK-----------RPKSFVFQNPDHQVVMPTVEADVAFGLGN---LNLTHDEVRS-KVA 140
K R +F + V +P G+ N L + VRS +
Sbjct: 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIP--------GVSNQFFLQTALNAVRSYRGQ 112
Query: 141 KALDAVGMSNYLQRPVQTL---------------SGGQKQRVAIAGALAEACKVLLLDEL 185
+ LD + ++ + L SGG+K+R I ++ +LDE
Sbjct: 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 186 TTFLDESDQFGVIEAVK------NLLGDSGEVTALWVTHRLEELEY--ADGAFYMEDGKI 237
+ LD I+A+K N L D G+ + + VTH L+Y D + G+I
Sbjct: 173 DSGLD-------IDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 224
Query: 238 VMQAD 242
V D
Sbjct: 225 VKSGD 229
|
Length = 248 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 27/199 (13%)
Query: 29 ESGVAI-ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL 87
ESG I NL Y + K+ K V IL + V G L L+G +G GK+TLL VLA
Sbjct: 754 ESGEDIFHWRNLTYEVKIKKEKRV-ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER 812
Query: 88 LKP---TNGHVYV---KRPKSF------VFQNPDHQVVMPTV---EADV--AFGLGNLNL 130
+ T G V SF V Q H +PT E+ A+ ++
Sbjct: 813 VTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLH---LPTSTVRESLRFSAYLRQPKSV 869
Query: 131 THDEVRSKVAKALDAVGMSNYLQRPVQT----LSGGQKQRVAIAGALAEACKVLL-LDEL 185
+ E V + + + M +Y V L+ Q++R+ I L K+LL LDE
Sbjct: 870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEP 929
Query: 186 TTFLDESDQFGVIEAVKNL 204
T+ LD + + + ++ L
Sbjct: 930 TSGLDSQTAWSICKLMRKL 948
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 39/224 (17%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV---VM 114
SFSV +G++ L G G G+S L+K+L G + T G VY+ K ++P + +M
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL-DGKPIDIRSPRDAIRAGIM 331
Query: 115 PTVEADVAFGL-------GNLNLT----HDEVRSKVAKALDAVGMSNYLQR--------- 154
E A G+ N+N++ H + +A +++
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391
Query: 155 -PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD---ESDQFGVIEAVKNLLGDSGE 210
+ LSGG +Q+ + L+E KV+LLDE T +D + + + VI L G
Sbjct: 392 QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE----LAAQG- 446
Query: 211 VTALWVTHRLEE-LEYADGAFYMEDGKIV-----MQADGVSILN 248
V L+V+ L E L AD M +G+I QA L+
Sbjct: 447 VAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQALS 490
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 45/173 (26%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P + D SF++ G++ + G G G++ L+KVL G L T+G+V + D
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTL-----------DGH 314
Query: 112 VVMPTVEAD-VAFG--------------LG-----NLNLTHDEVRSKVAKALD------A 145
V+ D +A G LG N++LT S+ +L A
Sbjct: 315 EVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQA 374
Query: 146 VG----MSNY----LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
V + N +++ + LSGG +Q+VAIA L KVL+LDE T +D
Sbjct: 375 VSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Query: 43 ITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS 102
I K + K L D S G + L+G NG GKSTL ++ G L PT G V S
Sbjct: 29 IPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS 88
Query: 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162
+ + + +E ++ F + + E+++ K ++ + ++ +PV+ S G
Sbjct: 89 VIAISAGLSGQLTGIE-NIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSG 147
Query: 163 QKQRVAIAGALAEACKVLLLDELTTFLDES 192
+ ++ + + +L++DE + D++
Sbjct: 148 MRAKLGFSINITVNPDILVIDEALSVGDQT 177
|
Length = 264 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 42/230 (18%)
Query: 42 SITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---- 97
++ K R+ V ++D SF V +G++ + G G G+S L++ ++GL KP +G + +
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321
Query: 98 -----------KRPKSFVFQN-------PDHQV----VMPTVEADVAFGLGNLNLTHDEV 135
+ ++V ++ D + V+ + G L+ +
Sbjct: 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD--RRAI 379
Query: 136 RSKVAKALDA--VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193
R + ++ V + P ++LSGG +Q++ +A LA +L+ + T LD
Sbjct: 380 RKFARELIEEFDVRAPSPDA-PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD--- 435
Query: 194 QFGVIEAVKNLL---GDSGEVTA-LWVTHRLEE-LEYADGAFYMEDGKIV 238
G IE + L D+G A L ++ L+E LE +D + +G+IV
Sbjct: 436 -VGAIEFIHERLLELRDAG--KAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-05
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ES 192
V LSGG+++RVA+ L E +LLLDE T LD ES
Sbjct: 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 9e-05
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 30/165 (18%)
Query: 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTN--GHVYVKRPK---------SFVFQNPDHQV 112
G++ +LGP+G GKSTLL LAG ++ N G + K FV Q+ +
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD---DI 150
Query: 113 VMP--TVEADVAF-GLGNL--NLTHDEVRSKVAKALDAVGMS--------NYLQRPVQTL 159
+ P TV + F L L +LT E + +G++ N R +
Sbjct: 151 LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI--- 207
Query: 160 SGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
SGG+++RV+IA + +L+LDE T+ LD + + ++ + +L
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252
|
Length = 659 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKP 90
+LGPNG GK+T +K+L+G L P
Sbjct: 104 ILGPNGIGKTTAVKILSGELIP 125
|
Length = 590 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 62/214 (28%), Positives = 88/214 (41%), Gaps = 40/214 (18%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGL---------------------LKPTNGHVY 96
S+SV G++ ++G +G GKS + GL +
Sbjct: 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86
Query: 97 VKRPKSFVFQ------NPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN 150
V + +FQ NP + V +EA GN R + L+ VG+ +
Sbjct: 87 VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGN----KKTRRQRAIDLLNQVGIPD 142
Query: 151 YLQR----PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
R P Q LSGG QRV IA A+A K+L+ DE TT LD + Q +IE + L
Sbjct: 143 PASRLDVYPHQ-LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL-- 199
Query: 207 DSGEVTAL-WVTHRLEEL-EYADGAFYMEDGKIV 238
E AL +TH L + E A M G++V
Sbjct: 200 QQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233
|
Length = 326 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 37/166 (22%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---------NGHVYVKRPK----- 101
D +FS+ +G+ ++G +G GKS L GLL NG + P+
Sbjct: 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNK 93
Query: 102 ------SFVFQNPDHQVVMPTVEADVAFG--LGNLNLTHDEVRSKVA-----KALDAVGM 148
S +FQ+P M ++ + G L + + H + A + LDAV M
Sbjct: 94 LRAEQISMIFQDP-----MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM 148
Query: 149 SNYLQR----PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
+R P SGG +QRV IA AL K+L+ DE TT LD
Sbjct: 149 PEARKRMKMYP-HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic SMC3 proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 58/226 (25%), Positives = 84/226 (37%), Gaps = 60/226 (26%)
Query: 71 GPNGCGKSTLLK----VLA------------GLLKPTNGHVYVKRPKSFVFQNPDHQVVM 114
G NG GKS VL+ LL +G + +F N D++ +
Sbjct: 30 GRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89
Query: 115 PTVEADVAFGLGNLNLTHDEV--------RSKVAKALDAVGMSN----YL---------- 152
E + +G L DE ++ V L++ G S Y+
Sbjct: 90 DKEEVRLRRTIG---LKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLT 146
Query: 153 ------QRPVQTLSGGQKQRVAIAGALA-EACK---VLLLDELTTFLDESDQFGVIEAVK 202
Q+ +Q LSGGQK VA+A A + C L DE+ LD + V +K
Sbjct: 147 NMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIK 206
Query: 203 NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248
L + +T T R E LE AD FY V + VS ++
Sbjct: 207 ELSDGAQFITT---TFRPELLEVAD-KFY-----GVKFRNKVSTID 243
|
The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 243 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 154 RPVQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209
+ + LSGG+K A+A A +LDE+ LD+++ V +K + S
Sbjct: 1062 QSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEM---SK 1118
Query: 210 EVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIK 251
E + +THR +E AD + MQ GVS + +
Sbjct: 1119 ETQFIVITHRKGTMEAADRLV-----GVTMQEKGVSKVVSVD 1155
|
Length = 1163 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 24/178 (13%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV--------YVKRPKSFV 104
+LR+ + + G L L+G +G GK+TL+ VLAG + T G++ + K+ ++F
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFA 952
Query: 105 F------QNPDH--QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY----L 152
QN H QV + AF ++ +E V + ++ V + N +
Sbjct: 953 RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV 1012
Query: 153 QRP-VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209
P V LS Q++R+ IA L ++ +DE T+ LD V+ V+N + D+G
Sbjct: 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1069
|
Length = 1470 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.001
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 18/204 (8%)
Query: 50 LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPD 109
L P+L SF V + ++G G GKS++L L +++ G + + F D
Sbjct: 1248 LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD 1307
Query: 110 HQVVMPTV-EADVAF-GLGNLNL----THDEV-------RSKVAKALD--AVGMSNYLQR 154
+ V+ + ++ V F G N+ H++ R+ + +D G+ +
Sbjct: 1308 LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSE 1367
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214
+ S GQ+Q +++A AL K+L+LDE T +D + ++ + T L
Sbjct: 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE---EFKSCTML 1424
Query: 215 WVTHRLEELEYADGAFYMEDGKIV 238
+ HRL + D + G+++
Sbjct: 1425 VIAHRLNTIIDCDKILVLSSGQVL 1448
|
Length = 1495 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 32/149 (21%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFV------------- 104
S ++ +G W +G NG GKS L + LAG L +G R F
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE----RQSQFSHITRLSFEQLQKL 78
Query: 105 ----FQNPDHQVVMPTVEADVAFGLGN----LNLTHDEVR-SKVAKALDAVGMSNYLQRP 155
+Q + ++ P E D G + D R ++A+ G++ L R
Sbjct: 79 VSDEWQRNNTDMLSPG-EDD--TGRTTAEIIQDEVKDPARCEQLAQQF---GITALLDRR 132
Query: 156 VQTLSGGQKQRVAIAGALAEACKVLLLDE 184
+ LS G+ ++ + AL +L+LDE
Sbjct: 133 FKYLSTGETRKTLLCQALMSEPDLLILDE 161
|
Length = 490 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 28/101 (27%)
Query: 119 ADVAFGLGNLNLTHDEVR------SKVAKALDA---VGMSNYLQ--RPVQTLSGGQKQRV 167
ADV L++T +E K+A+ L VG+ Y++ +P TLSGG+ QRV
Sbjct: 779 ADV------LDMTVEEALEFFEAIPKIARKLQTLVDVGLG-YIKLGQPATTLSGGEAQRV 831
Query: 168 AIAGALAEACK---VLLLDELTTFLDESDQFGVIEAVKNLL 205
+A L++ + +LDE TT L D +K LL
Sbjct: 832 KLAKELSKRSTGKTLYILDEPTTGLHFDD-------IKKLL 865
|
Length = 935 |
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.001
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 156 VQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209
+ +LSGG+K RVA+A L +L++DE T FLDE + + + ++ L DS
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858
Query: 210 EVTAL-WVTHRLEELEYADGAF 230
++ + ++H E L AD A+
Sbjct: 859 DIPQVIMISHHRELLSVADVAY 880
|
Length = 895 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 134 EVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGAL-AEACKVL-LLDELTTFLD 190
E+R ++ +D VG+ L R TLSGG+ QR+ +A + + VL +LDE + L
Sbjct: 464 EIRERLGFLID-VGLDYLSLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH 522
Query: 191 ESDQFGVIEAVKNL--LGDSGEVTALWVTHRLEELEYAD 227
+ D +I +K L LG+ T + V H + + AD
Sbjct: 523 QRDNRRLINTLKRLRDLGN----TLIVVEHDEDTIRAAD 557
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86
P+L + + + L+G NG GKSTL+K+L G
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51
|
Length = 635 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
+ +LSGG ++ A+ AL VLLLDE T LD
Sbjct: 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 152 LQRPVQTLSGGQKQRVAIAGAL-AEACKVL-LLDELTTFLDESDQFGVIEAVKNL--LGD 207
L R TLSGG+ QR+ +A + + VL +LDE + L D +IE +K L LG+
Sbjct: 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGN 190
Query: 208 SGEVTALWVTHRLEELEYAD 227
T L V H + + AD
Sbjct: 191 ----TVLVVEHDEDTIRAAD 206
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 263 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 100.0 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.97 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.97 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.97 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.97 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.97 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.97 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.97 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.96 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.96 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.96 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.96 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.96 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.96 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.94 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.94 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.92 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.91 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.9 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.9 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.9 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.9 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.9 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.9 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.89 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.88 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.88 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.88 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.87 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.86 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.85 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.82 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.8 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.79 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.77 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.76 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.74 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.72 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.67 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.62 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.62 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.62 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.62 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.59 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.58 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.58 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.57 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.56 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.53 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.53 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.52 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.52 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.52 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.52 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.49 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.49 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.48 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.47 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.46 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.4 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.4 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.39 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.38 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.37 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.37 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.3 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.3 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.27 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.22 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.22 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.21 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.18 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 99.15 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.13 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.11 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 99.06 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.04 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 99.04 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.99 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.97 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.96 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.95 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.91 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.89 | |
| COG4637 | 373 | Predicted ATPase [General function prediction only | 98.87 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.87 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.86 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.86 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.86 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.84 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.84 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.82 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.82 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.8 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.76 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.74 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.71 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.63 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.59 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.59 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.58 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.57 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.57 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.56 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.54 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.5 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.49 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.47 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.46 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.46 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.45 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.45 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.45 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.43 | |
| TIGR01070 | 840 | mutS1 DNA mismatch repair protein MutS. | 98.42 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.42 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.4 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.4 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-65 Score=428.51 Aligned_cols=221 Identities=34% Similarity=0.488 Sum_probs=203.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+|+|++. .+|++|||+|++||+++|+||||||||||||||.||.+|++|+|.+++
T Consensus 2 mi~i~~l~K~fg~~-----~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R 76 (240)
T COG1126 2 MIEIKNLSKSFGDK-----EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76 (240)
T ss_pred eEEEEeeeEEeCCe-----EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHH
Confidence 79999999999975 599999999999999999999999999999999999999999999976
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
++|+|||+.++++.. ||.+|+.++. ...+.++++.++++.++|+++||.+..+.+|.+|||||||||||||||+.+|
T Consensus 77 ~~vGmVFQ~fnLFPHl-TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 77 RKVGMVFQQFNLFPHL-TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HhcCeecccccccccc-hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 378999999877766 9999998874 3457788899999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh-hhhhhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF-IKSRQS 255 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~ 255 (263)
+++|+|||||+|||+...++++.+++++++ |+|.|+|||++.+++ .||||++|++|+++++|+|++++.+ ...+..
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~ 233 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTR 233 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHH
Confidence 999999999999999999999999999864 799999999999995 7999999999999999999999986 345566
Q ss_pred hhhhhc
Q 024738 256 SYIERI 261 (263)
Q Consensus 256 ~~~~~~ 261 (263)
.|++.+
T Consensus 234 ~FL~~i 239 (240)
T COG1126 234 QFLSKI 239 (240)
T ss_pred HHHHhh
Confidence 777654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=419.54 Aligned_cols=224 Identities=33% Similarity=0.482 Sum_probs=203.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||++++|+|.|..+..+...+|+||||+|++||++||+|.||||||||+|||.+|.+|++|+|.+++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6899999999986422346799999999999999999999999999999999999999999999975
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
+||++||++++. ...||.+|++|++...+.++++.++++.++++.+||+++.+++|.+|||||||||+|||||+.+
T Consensus 81 ~R~~IGMIFQhFnLL-ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 81 LRQKIGMIFQHFNLL-SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHhhccEEecccccc-ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 489999998753 3349999999999888888899999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhhhhh-hh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIKS-RQ 254 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~-~~ 254 (263)
|++||.|||||+|||.+.+.++++|+++.++ .|.||++|||.|+.++ +||||.+|++|++++.|+..+++.+..+ ..
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~-lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t 238 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAIT 238 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHH-cCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHH
Confidence 9999999999999999999999999998654 6899999999999995 8999999999999999999999976433 33
Q ss_pred hhhh
Q 024738 255 SSYI 258 (263)
Q Consensus 255 ~~~~ 258 (263)
..|+
T Consensus 239 ~~fi 242 (339)
T COG1135 239 QEFI 242 (339)
T ss_pred HHHH
Confidence 3444
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=404.07 Aligned_cols=210 Identities=31% Similarity=0.458 Sum_probs=196.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||||+|+++ .+++|+||+|++||+++++|||||||||+||+|.+|++|++|+|++++
T Consensus 1 MI~~~nvsk~y~~~-----~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 1 MIEFENVSKRYGNK-----KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75 (309)
T ss_pred CceeeeeehhcCCc-----eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHH
Confidence 68999999999864 599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC--cccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS--NYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
++||+-|...+++.+ ||.+|+.+-....+|++++.++++.++++.+||+ ++.+|+|++|||||+|||.+||||+.+|
T Consensus 76 ~IGYviQqigLFPh~-Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 76 KIGYVIQQIGLFPHL-TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhhhhhcccCCCc-cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 589999998776665 9999999877777888999999999999999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||++|||.+|.++.+.++++.++ -|+|||+||||++++ +.+|||.+|++|+++..++|+++..+
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~-l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKE-LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHH-hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999765 478999999999996 79999999999999999999998875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=403.52 Aligned_cols=199 Identities=37% Similarity=0.533 Sum_probs=184.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v 104 (263)
+++++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.+++ .++||
T Consensus 3 ~l~i~~v~~~f~~-----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~v 77 (248)
T COG1116 3 LLEIEGVSKSFGG-----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYV 77 (248)
T ss_pred eEEEEeeEEEeCc-----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEE
Confidence 6999999999986 3699999999999999999999999999999999999999999999976 47999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
||++.++++. ||.+|+.+++...+.+.++..+++.++++.+||.++.+++|.+|||||||||+|||||+.+|++|||||
T Consensus 78 FQ~~~LlPW~-Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 78 FQEDALLPWL-TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred eccCcccchh-hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999887776 999999999877666677777889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC--CEEE
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED--GKIV 238 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~--G~i~ 238 (263)
||++||..++..+.+.+.+++++. ++||++||||++++ ..+|||++|.+ |+|.
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999998754 68999999999997 67999999999 4453
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-59 Score=406.70 Aligned_cols=210 Identities=41% Similarity=0.598 Sum_probs=188.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|.+|+|++++
T Consensus 2 ~L~~~~ls~~y~~~-----~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk 76 (258)
T COG1120 2 MLEVENLSFGYGGK-----PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAK 76 (258)
T ss_pred eeEEEEEEEEECCe-----eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhh
Confidence 69999999999864 699999999999999999999999999999999999999999999986
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||.+...+.+ ||.|.+.++...+ ....++.++.+.++++.+|+.++.++++.+|||||||||.|||||+.
T Consensus 77 ~ia~vpQ~~~~~~~~-tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ 155 (258)
T COG1120 77 KLAYVPQSPSAPFGL-TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ 155 (258)
T ss_pred hEEEeccCCCCCCCc-EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc
Confidence 589999997544333 9999998874321 21234445678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||++||..++.+++++++++.++ +|+|||+|+||++.+ .+||++++|++|++++.|+|+++++.
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999999999999999999999999999754 579999999999997 68999999999999999999998875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=393.08 Aligned_cols=203 Identities=35% Similarity=0.476 Sum_probs=181.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+++++||++.|+.+... .++|+++||+|++||+++|+|||||||||||++|.|+.+|++|+|++++
T Consensus 1 ~i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 1 MIELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred CcEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 47899999999764322 5799999999999999999999999999999999999999999999964
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccC-CCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ-RPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~ 174 (263)
++|||||+.++.+.+ |+.||+.+++...+.......+++.++++.+||.+..+ ++|.+|||||||||||||||+
T Consensus 80 ~R~~~iGfvFQ~~nLl~~l-tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDL-TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHhEEEECccCCCCCCC-CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 489999998866655 99999998765555544455677889999999997666 889999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEE
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~ 238 (263)
.+|++||+||||.+||..+.+.++++|.++.++ .|+|||+||||...+.+|||++.|++|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999764 478999999999999999999999999943
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-58 Score=398.19 Aligned_cols=210 Identities=37% Similarity=0.503 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ce
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PK 101 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~ 101 (263)
++|+++|++++|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ +|
T Consensus 3 ~~i~v~nl~v~y~~~-----~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGNR-----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECCE-----eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeE
Confidence 479999999999863 499999999999999999999999999999999999999999999854 49
Q ss_pred EEEecCCCCccccc-CHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 102 SFVFQNPDHQVVMP-TVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 102 ~~v~q~~~~~~~~~-tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
|||||.......+| ||++.+.++.... ....++.++++.++|+++|+.++.++++.+|||||+|||.|||||+.+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccC
Confidence 99999653222333 9999998873211 122234478899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|+|+.++..++++|+++.++ |+||++||||++.+ ++||+|+.|+ +++.+.|+++++++.
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 9999999999999999999999999999754 79999999999997 6899999996 678999999998764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-58 Score=390.29 Aligned_cols=222 Identities=30% Similarity=0.425 Sum_probs=199.4
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.+.|++++|+++|+++ .|++|+||+|++||+++|+||||||||||||+|.|+++|++|+|++.+
T Consensus 6 ~~~I~vr~v~~~fG~~-----~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~ 80 (263)
T COG1127 6 EPLIEVRGVTKSFGDR-----VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80 (263)
T ss_pred cceEEEeeeeeecCCE-----EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH
Confidence 4589999999999875 699999999999999999999999999999999999999999999964
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAra 172 (263)
++|++||...++..+ ||+||+.|++.. ..++++..++.+...++.+||... .+++|++|||||++|++||||
T Consensus 81 ~~ir~r~GvlFQ~gALFssl-tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 81 YEIRKRMGVLFQQGALFSSL-TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred HHHHhheeEEeecccccccc-chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 489999998765444 999999998654 356777788888889999999876 899999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIK 251 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
++.+|++|++||||+||||.+...+-++|+++.+. -|.|+++||||++.+ .+|||++++.+|+|+++|+++++.+..+
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~-lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~ 238 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDA-LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD 238 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh-hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999998764 579999999999997 6899999999999999999999987655
Q ss_pred hhhhhhhh
Q 024738 252 SRQSSYIE 259 (263)
Q Consensus 252 ~~~~~~~~ 259 (263)
..-..|+.
T Consensus 239 P~v~qf~~ 246 (263)
T COG1127 239 PWVRQFFN 246 (263)
T ss_pred HHHHHHhc
Confidence 45555554
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-58 Score=397.64 Aligned_cols=214 Identities=48% Similarity=0.717 Sum_probs=200.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++++++|++++|++. ..+|+++||+|++|++++|+|+||||||||+++++|+++|++|+|.+++
T Consensus 2 ~~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 2 RMIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred ceEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 479999999999764 3699999999999999999999999999999999999999999998754
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
++|||||+|..+++.+||.+.++|+..+.+.+.++.++++.++++.+|+.+++++++.+|||||||||+||.+|+.+|
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence 489999999999988899999999999989988889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
++||||||||+||+.++++++++++++..+ .|+|+|++|||++++ .+||++++|++|+++.+|+|.++++..
T Consensus 158 ~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 158 EILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999754 468999999999997 689999999999999999999998754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=417.18 Aligned_cols=223 Identities=36% Similarity=0.532 Sum_probs=201.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------c
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------P 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~ 100 (263)
+.++++||+|+|++ ..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.+++ .
T Consensus 4 ~~l~i~~v~k~yg~-----~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD-----FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRP 78 (352)
T ss_pred ceEEEEeeeeecCC-----eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcc
Confidence 47999999999985 3699999999999999999999999999999999999999999999975 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
+++|||+..+++.+ ||.+|+.|+++..+ ...+++++++.++++.++|+++.+++|.+|||||+|||||||||+.+|++
T Consensus 79 ig~VFQ~YALFPHl-tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v 157 (352)
T COG3842 79 IGMVFQSYALFPHM-TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV 157 (352)
T ss_pred cceeecCcccCCCC-cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch
Confidence 89999998877766 99999999988333 44566888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhh-hhhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSR-QSSY 257 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~-~~~~ 257 (263)
||||||+|+||...+.++...++++.++ .|+|.|+||||.+++ ..+|||.+|++|+|...|+|+++......+ -..|
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~lq~~-~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~F 236 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKELQRE-LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADF 236 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHH
Confidence 9999999999999999999999999875 489999999999996 789999999999999999999998764333 4445
Q ss_pred hhhc
Q 024738 258 IERI 261 (263)
Q Consensus 258 ~~~~ 261 (263)
++..
T Consensus 237 iG~~ 240 (352)
T COG3842 237 IGES 240 (352)
T ss_pred hCcc
Confidence 5543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-58 Score=412.84 Aligned_cols=211 Identities=35% Similarity=0.506 Sum_probs=198.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++. .+++++||+|++||+++|+||||||||||||+|+||.+|++|+|++++ .+
T Consensus 3 ~i~l~~v~K~yg~~-----~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF-----EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred EEEEeeeEEEcCCc-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCE
Confidence 69999999999863 289999999999999999999999999999999999999999999964 58
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
++|||+..+++.+ ||++|+.|+++..+...+++++++.++++.++|+++++++|.+|||||||||||||||+++|+++|
T Consensus 78 amVFQ~yALyPhm-tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L 156 (338)
T COG3839 78 AMVFQNYALYPHM-TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL 156 (338)
T ss_pred EEEeCCccccCCC-cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE
Confidence 9999999888777 999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
||||+|+||...+..+...|+++.++ -|.|+|+||||..++ ..+|||.+|++|++...|+|.++....
T Consensus 157 ~DEPlSnLDa~lR~~mr~ei~~lh~~-l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSEIKKLHER-LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred ecCchhHhhHHHHHHHHHHHHHHHHh-cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999998765 478999999999997 589999999999999999999998753
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=381.64 Aligned_cols=211 Identities=30% Similarity=0.476 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||++.|+++ +++|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++
T Consensus 2 ~~i~~~nl~k~yp~~----~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 2 MMIEVKNLSKTYPGG----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred ceEEEeeeeeecCCC----ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 489999999999643 3799999999999999999999999999999999999999999999964
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccC--------CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGN--------LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 167 (263)
++||+||.+++.... +|.+|+..+... .++..++.+..+.++|+++|+.++..++..+|||||+|||
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~-sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRL-SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHHhceeEeccCCccccc-HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 489999999865544 999999876432 2455566677888999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++||.|||+++|||.+.+.+++.|+++.++ .|.|+|++.|+++.+ +||||++-|++|+++++|++.++
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~-~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el 235 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE-DGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH-cCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence 9999999999999999999999999999999999999765 579999999999998 69999999999999999999886
Q ss_pred Hh
Q 024738 247 LN 248 (263)
Q Consensus 247 ~~ 248 (263)
..
T Consensus 236 ~~ 237 (258)
T COG3638 236 TD 237 (258)
T ss_pred hH
Confidence 43
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=380.32 Aligned_cols=214 Identities=32% Similarity=0.473 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|+++.|+.+.. ..+++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.+++
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 47999999999987532 23699999999999999999999999999999999999999999999976
Q ss_pred --ceEEEecCCCCcccc-cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 --PKSFVFQNPDHQVVM-PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.+-+|||+|...+.. .||.+-+.-++...+.+.. ++++.++++.+||. .+++++|.+|||||+||+||||||+.
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 368999999654432 2898888777665555433 34588999999997 68999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++||||||||+||+..+.+++++|.++.++ .+.|+|+||||+..+. .|||+++|++|++++.++..++.+.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999999999999999765 5789999999999996 6999999999999999999998876
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=400.63 Aligned_cols=214 Identities=34% Similarity=0.463 Sum_probs=189.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+|+|+++. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 mI~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 589999999996321 113699999999999999999999999999999999999999999999854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
+++|+||++..+.. .|+.+|+.++....+...++.++++.++++.+||.++.++++.+|||||||||+|||||+.+
T Consensus 80 ~r~~Ig~v~Q~~~l~~~-~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~ 158 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSS-RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (343)
T ss_pred HhcCEEEEECCcccccc-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 48999999864332 39999999876544455566677889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||++||+.++..++++|+++.++ .|.|||++||+++.+ ++||++++|++|++++.|++++++..
T Consensus 159 P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~-~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 159 PKVLLCDEATSALDPATTQSILELLKEINRR-LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 9999999999999999999999999998653 368999999999998 58999999999999999999998754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-55 Score=395.04 Aligned_cols=211 Identities=29% Similarity=0.371 Sum_probs=188.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+|+|++. .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++
T Consensus 5 ~~~i~i~~l~k~~~~~-----~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 5 VAPIDFRNVEKRYGDK-----LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred CceEEEEeEEEEECCe-----EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 3589999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.+||+||++..+.. .|+.+|+.+....++....+..+++.++++.+++.+..++++.+||+|||||++|||||+++|+
T Consensus 80 ~~ig~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 80 QRVGVVPQFDNLDPD-FTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred hcEEEEeccCcCCCC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 48999999865433 3999999875444445555556778899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..++++|+++.+ .|+|||++||+++++ ++||+|++|++|++++.|+++++.+.
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999854 368999999999998 57999999999999999999988653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-56 Score=365.91 Aligned_cols=203 Identities=34% Similarity=0.469 Sum_probs=188.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+|.|++. .++|+||||+|++||++-|+||||||||||||+|++..+|++|+|++++
T Consensus 1 mI~f~~V~k~Y~~g----~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 1 MIRFENVSKAYPGG----REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred CeeehhhhhhcCCC----chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 68999999999875 3699999999999999999999999999999999999999999999854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
+||+||||..+.... ||+||++|++...+....++++++.++|+.+||.+..+..|.+|||||||||+||||++++
T Consensus 77 LRR~IGvVFQD~rLL~~~-tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDR-TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred hhheeeeEeeeccccccc-hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 589999998654443 9999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecC
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
|++||+||||.+|||....++++++.++.. .|+||||+|||.+.++ .-.|++.+++|+++.+..
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999854 4899999999999985 678999999999987754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-56 Score=389.49 Aligned_cols=210 Identities=36% Similarity=0.475 Sum_probs=193.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|.++|+++.|+.. .+++||||+|+.||.+||+||||||||||||+|+||+.|++|.|.+++
T Consensus 2 ~i~i~~~~~~~~~~-----~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF-----GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred ceeehhhhhhcccc-----cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhh
Confidence 68999999999874 699999999999999999999999999999999999999999999964
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
++|||||+..+++.+ ||.+|++|++... ..+..+.+.++.++|+.+.|+.+.+++|.+|||||||||||||||+.+
T Consensus 77 R~VGfvFQ~YALF~Hm-tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e 155 (345)
T COG1118 77 RKVGFVFQHYALFPHM-TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE 155 (345)
T ss_pred cceeEEEechhhcccc-hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence 489999998765555 9999999997544 234567788999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++||||||+++||...++++...|+++..+ -|.|+++||||.+++ +.||||++|++|+|...|++.++...
T Consensus 156 P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~-~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 156 PKVLLLDEPFGALDAKVRKELRRWLRKLHDR-LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred CCeEeecCCchhhhHHHHHHHHHHHHHHHHh-hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 9999999999999999999999999998765 368999999999997 78999999999999999999999865
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-55 Score=393.24 Aligned_cols=210 Identities=38% Similarity=0.545 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEC-CCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 33 AIECSNLNYSIT-KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 33 ~l~~~nl~~~y~-~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.++++||+|+|+ ++ .+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~i~~~~l~k~~~~~~-----~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGGDK-----TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCCCC-----EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 689999999998 43 699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
++||++|++..+..+ |++||+.|....++.+....++++.++++.++|.+..++++.+||+|||||++||+||+++|++
T Consensus 79 ~igy~~~~~~~~~~l-T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l 157 (293)
T COG1131 79 RIGYVPQEPSLYPEL-TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL 157 (293)
T ss_pred heEEEccCCCCCccc-cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 489999999765555 9999999977666554445567899999999999877899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+||||.++.+++++|++++++ +++||+++||.+++++ .||+|++|++|+++++|+++++...
T Consensus 158 liLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 158 LILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999764 3489999999999985 6999999999999999999887654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-55 Score=401.36 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=190.5
Q ss_pred eEEEEeEEEEE-CCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------c
Q 024738 33 AIECSNLNYSI-TKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y-~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~ 100 (263)
+|+++||+++| +++ .+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++ .
T Consensus 3 ~l~i~~l~~~~~~~~-----~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGKT-----QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCCC-----EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 69999999999 542 599999999999999999999999999999999999999999999975 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..++.+ ||.+|+.+++...+.+..+..+++.++++.++|++++++++.+|||||||||+|||||+.+|++|
T Consensus 78 ig~v~Q~~~lfp~~-tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll 156 (356)
T PRK11650 78 IAMVFQNYALYPHM-SVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156 (356)
T ss_pred EEEEeCCccccCCC-CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999998754444 99999998865444555666678899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||++||+..+..+.+.|+++.++ .|.|+|+||||++++ .+||++++|++|++++.|+++++++.
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999998653 368999999999987 68999999999999999999998765
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=370.66 Aligned_cols=210 Identities=29% Similarity=0.427 Sum_probs=192.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
||++.+++|+|+.. ..+++||||+++.||++||+|||||||||+||+|++++.|++|.|++++ +
T Consensus 1 Ml~v~~l~K~y~~~----v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~ 76 (245)
T COG4555 1 MLEVTDLTKSYGSK----VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK 76 (245)
T ss_pred CeeeeehhhhccCH----HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhh
Confidence 68999999999874 3599999999999999999999999999999999999999999999964 5
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
+|.++.....+..+ |++||+.|+...+++...+.++++.++.+.++|.+.+++++.+||.||||||+|||||+++|+++
T Consensus 77 IGVl~~e~glY~Rl-T~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~ 155 (245)
T COG4555 77 IGVLFGERGLYARL-TARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSIL 155 (245)
T ss_pred cceecCCcChhhhh-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeE
Confidence 88888655444334 99999999887788888899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||||..++..+.+.++++.+ .|++||++||++++++ .||+|+++++|++++.|+++.+.+.
T Consensus 156 vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 156 VLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred EEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999854 3689999999999996 8999999999999999999988764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=398.11 Aligned_cols=210 Identities=31% Similarity=0.514 Sum_probs=191.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 6 ~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGSN-----TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred EEEEEeEEEEECCe-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 79999999999753 589999999999999999999999999999999999999999999964 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ |+.+|+.|++...+....+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++||
T Consensus 81 g~vfQ~~~lfp~~-tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 81 CMVFQSYALFPHM-SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EEEeCCcccCCCC-CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998755444 999999998765555566677889999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+.++.+.|+++.++ .|+|+|+||||.+++ ..||++++|++|+++..|+++++...
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998653 468999999999997 68999999999999999999998764
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=398.53 Aligned_cols=210 Identities=36% Similarity=0.478 Sum_probs=191.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++ .+
T Consensus 4 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGAF-----TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78 (353)
T ss_pred EEEEEEEEEEeCCe-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 79999999999763 589999999999999999999999999999999999999999999965 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.|++...+.+..+.++++.++++.++|++++++++.+|||||||||+|||||+.+|++||
T Consensus 79 g~v~Q~~~lfp~~-tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 79 GIVFQSYALFPNL-TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred EEEeCCcccCCCC-cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998755444 999999998765455566667789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+.+.|+++.++ .|.|+|+||||++++ ..||++++|++|++++.|+++++++.
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998653 468999999999997 68999999999999999999999875
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=396.19 Aligned_cols=211 Identities=33% Similarity=0.500 Sum_probs=191.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN--GHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~--G~I~~~~----------- 99 (263)
.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.+++
T Consensus 5 ~l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGAN-----TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79 (362)
T ss_pred EEEEEEEEEEECCe-----EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHC
Confidence 58999999999753 59999999999999999999999999999999999999999 9999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|+||++..++.+ ||.+|+.|++...+....+.++++.++++.++|+++.++++.+|||||||||+|||||+.+|++
T Consensus 80 ~ig~vfQ~~~l~p~~-tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l 158 (362)
T TIGR03258 80 GLALLFQNYALFPHL-KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158 (362)
T ss_pred CEEEEECCcccCCCC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 489999998755444 9999999987555555566677899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||++||+..+.++.+.|+++.++..|.|+|+||||++++ ..||+|++|++|+++..|+++++...
T Consensus 159 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999986542268999999999997 58999999999999999999999765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-54 Score=374.37 Aligned_cols=208 Identities=34% Similarity=0.461 Sum_probs=182.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 1 IELRGLTKSFGGR-----TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred CeEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 4789999999753 599999999999999999999999999999999999999999999854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+.. .|+.+|+.++.... ....++..+++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus 76 ~~~i~~v~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~ 154 (235)
T cd03261 76 RRRMGMLFQSGALFDS-LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154 (235)
T ss_pred hcceEEEccCcccCCC-CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 27899998754332 39999998764322 234445566788899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|++|||||||+|||+.++..+++.|++++++ .|.|||++|||++++ .+||++++|++|++++.|+++++..
T Consensus 155 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999998653 367999999999997 5799999999999999999888764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=392.23 Aligned_cols=211 Identities=28% Similarity=0.408 Sum_probs=187.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
..+|+++||+|+|+++ .+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 39 ~~~i~i~nl~k~y~~~-----~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~ 113 (340)
T PRK13536 39 TVAIDLAGVSKSYGDK-----AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113 (340)
T ss_pred ceeEEEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHh
Confidence 3579999999999763 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.+||+||++..+..+ |+.+|+.+....++....+..+++.++++.++|.+..++++.+||||||||++||+||+++|+
T Consensus 114 ~~ig~v~q~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 114 ARIGVVPQFDNLDLEF-TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred ccEEEEeCCccCCCCC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 389999998654433 999999865433344444555677889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..++++|+++.+ .|.|||++||+++++ ++||+|++|++|++++.|+++++.+.
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999864 368999999999998 58999999999999999999998654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-54 Score=396.73 Aligned_cols=211 Identities=34% Similarity=0.476 Sum_probs=191.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------c
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------P 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~ 100 (263)
++|+++|++++|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .
T Consensus 13 ~~L~l~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDGK-----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87 (375)
T ss_pred ceEEEEEEEEEECCe-----EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 479999999999753 589999999999999999999999999999999999999999999965 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..++.+ ||.+|+.|++...+.+..+..+++.++++.++|++++++++.+|||||||||+|||||+.+|++|
T Consensus 88 ig~vfQ~~~lfp~l-tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 88 VNTVFQSYALFPHM-TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEEEecCcccCCCC-CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999998755444 99999999865445555566678889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||++||+..+..+.+.|+++.++ .|.|+|+||||.+++ ..||++++|++|+++..|++++++..
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRK-LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999998764 368999999999997 68999999999999999999998765
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-54 Score=387.02 Aligned_cols=215 Identities=33% Similarity=0.495 Sum_probs=189.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++.....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 4899999999975321113599999999999999999999999999999999999999999998842
Q ss_pred ------------------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCC
Q 024738 100 ------------------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQR 154 (263)
Q Consensus 100 ------------------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 154 (263)
.+||+||++..+++..|+.+|+.++....+...++..+++.++++.+||. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 26999998754444459999998876555556666777889999999997 78999
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe
Q 024738 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME 233 (263)
Q Consensus 155 ~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~ 233 (263)
++.+||||||||++|||||+.+|++|||||||++||+.++..+++.|+++++ .|.|||++|||++.+ ++|||+++|+
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999864 368999999999987 6899999999
Q ss_pred CCEEEEecChhhHHhh
Q 024738 234 DGKIVMQADGVSILNF 249 (263)
Q Consensus 234 ~G~i~~~g~~~~~~~~ 249 (263)
+|++++.|+++++++.
T Consensus 240 ~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 240 DGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEECCHHHHhcC
Confidence 9999999999988764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=383.45 Aligned_cols=216 Identities=34% Similarity=0.536 Sum_probs=188.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++......++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4899999999974211113699999999999999999999999999999999999999999998854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC--cccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS--NYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++...++..|+.+|+.++....+...++..+++.++++.+||. +..++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 37999999754444459999998865444555666667888999999997 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||+|||+.++.++++.|++++++ .|.|||++|||++++ .+||++++|++|++++.|+++++++.
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998653 368999999999997 58999999999999999999988653
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-55 Score=365.27 Aligned_cols=217 Identities=31% Similarity=0.461 Sum_probs=192.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-----eEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-----GHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-----G~I~~~~------- 99 (263)
+.++++||++.|+++ .+|+|||++|++++++||+||||||||||||++..+..... |+|.+++
T Consensus 6 ~~~~~~~l~~yYg~~-----~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYGDK-----HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEECch-----hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 469999999999975 59999999999999999999999999999999999987754 9999864
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC----CcccCCCCCCCChHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqRv 167 (263)
++|+|||.|+.++ .|+++|+.++.+..+...++.++.++..|+...| .+.+++.+..|||||+||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp--~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP--MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC--chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 4899999997543 4999999999887777667778888888888877 3578899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++||||||||+|||.+..++.+++.++.+ ..|||||||+|..+ +.+|+..++..|++++.|+++++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 999999999999999999999999999999999999963 47999999999997 57999999999999999999999
Q ss_pred Hhhh-hhhhhhhh
Q 024738 247 LNFI-KSRQSSYI 258 (263)
Q Consensus 247 ~~~~-~~~~~~~~ 258 (263)
+++. ......|+
T Consensus 236 F~~P~~~~TedYi 248 (253)
T COG1117 236 FTNPKHKRTEDYI 248 (253)
T ss_pred hcCccHHHHHHHh
Confidence 9864 34455676
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=391.98 Aligned_cols=210 Identities=37% Similarity=0.507 Sum_probs=188.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++ .+
T Consensus 2 ~L~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGRT-----QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76 (353)
T ss_pred EEEEEEEEEEeCCe-----EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCE
Confidence 69999999999763 599999999999999999999999999999999999999999999964 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
+|+||++..++.+ |+.+|+.++.... ..+.++..+++.++++.++|.++.++++.+|||||||||+|||||+.+|
T Consensus 77 ~~v~Q~~~l~p~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P 155 (353)
T PRK10851 77 GFVFQHYALFRHM-TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEP 155 (353)
T ss_pred EEEecCcccCCCC-cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998654433 9999999875431 2344556678899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+..+..+.+.|+++.++ .|+|+|+||||++++ ..||++++|++|++++.|++++++..
T Consensus 156 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 156 QILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999998653 468999999999997 58999999999999999999998764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=394.26 Aligned_cols=212 Identities=37% Similarity=0.512 Sum_probs=192.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|++. .+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|++++
T Consensus 17 ~~~l~l~~v~~~~~~~-----~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r 91 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ-----HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQR 91 (377)
T ss_pred CceEEEEeEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHC
Confidence 4579999999999753 589999999999999999999999999999999999999999999965
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.+||+||++..++.+ |+.+|+.+++...+....+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++
T Consensus 92 ~ig~vfQ~~~lfp~l-tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 92 PINMMFQSYALFPHM-TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred CEEEEeCCCccCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 489999998755444 9999999886544455666677889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||++||+..+..+.+.|+++.++ .|.|+|+||||.+++ ..||++++|++|+++..|+++++...
T Consensus 171 LLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQLEVVDILER-VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998654 368999999999997 68999999999999999999998765
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=384.98 Aligned_cols=211 Identities=28% Similarity=0.400 Sum_probs=185.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
+.+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~~~i~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDK-----VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred CcEEEEEeEEEEeCCe-----EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 3579999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+.. .|+.+|+.+....++....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 77 VAIGVVPQFDNLDPE-FTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred hcEEEEeccccCCcC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 48999999764433 3999998764333334444455667789999999998999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+++.|+++++ .|.|||++||+++++ ++||++++|++|+++..|+++++...
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999864 368999999999998 58999999999999999999988653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=381.62 Aligned_cols=215 Identities=34% Similarity=0.513 Sum_probs=187.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+.+......+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999974311112599999999999999999999999999999999999999999999864
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++..+++..|+.+|+.++....+....+..+++.++++.++|. .+.++++.+||||||||++|||||+
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 26999999743444459999998876544555566677888999999996 5789999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++ ++||+|++|++|+++++|++++++..
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999864 368999999999997 58999999999999999999988753
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=368.36 Aligned_cols=206 Identities=33% Similarity=0.427 Sum_probs=180.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 i~~~~~~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (220)
T cd03265 1 IEVENLVKKYGDF-----EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75 (220)
T ss_pred CEEEEEEEEECCE-----EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcE
Confidence 5789999999753 599999999999999999999999999999999999999999999865 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+.. .|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~~~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 76 GIVFQDLSVDDE-LTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred EEecCCcccccc-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999864332 3999999876433334444456678899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
|||||++||+.+++.+.+.|++++++ .|.|||++||+++++ .+||++++|++|+++..++++++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999998653 367999999999997 57999999999999998887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=371.13 Aligned_cols=210 Identities=38% Similarity=0.476 Sum_probs=183.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGDF-----VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV 76 (239)
T ss_pred EEEEEeEEEEECCE-----EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce
Confidence 58999999999753 599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCC----ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNL----THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
+|++|++..+. ..|+.+|+.++...... ...+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|
T Consensus 77 ~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 155 (239)
T cd03296 77 GFVFQHYALFR-HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155 (239)
T ss_pred EEEecCCcccC-CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999975432 23999999876432221 23334556788999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.+++.+.+.|.+++++ .|+|||++||+++++ +.||++++|++|++++.|+++++.+.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 999999999999999999999999998653 367999999999987 57999999999999999999888653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=381.49 Aligned_cols=216 Identities=36% Similarity=0.517 Sum_probs=187.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++......++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999974211113599999999999999999999999999999999999999999998865
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++...++..|+.+|+.++....+...++..+++.++++.++|. ...++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 37999998743333349999998875444445555667788999999997 6789999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..++++|++++++ .|.|||++|||++++ ++|||+++|++|+++++|+++++++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998653 368999999999997 58999999999999999999887654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=393.10 Aligned_cols=210 Identities=27% Similarity=0.461 Sum_probs=188.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 3 ~l~i~~l~~~~~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGDV-----VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV 77 (369)
T ss_pred EEEEEEEEEEeCCe-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCE
Confidence 59999999999753 599999999999999999999999999999999999999999999864 38
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ |+.+|+.++....+....+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++||
T Consensus 78 ~~v~Q~~~l~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL 156 (369)
T PRK11000 78 GMVFQSYALYPHL-SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (369)
T ss_pred EEEeCCcccCCCC-CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998644333 999999987654444455566788899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..++.+++.|+++.++ .|.|+|+||||++++ ..||++++|++|+++..|+++++...
T Consensus 157 LDEPts~LD~~~~~~l~~~L~~l~~~-~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 157 LDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998653 368999999999987 58999999999999999999998764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=366.08 Aligned_cols=201 Identities=37% Similarity=0.552 Sum_probs=175.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++
T Consensus 1 l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGSV-----RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75 (213)
T ss_pred CeeeeeEEEeCCe-----eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE
Confidence 4789999999753 599999999999999999999999999999999999999999999864 479
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 76 ~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lll 154 (213)
T cd03259 76 MVFQDYALFP-HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLL 154 (213)
T ss_pred EEcCchhhcc-CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976332 239999998764333333444556788899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||+|||+.++..+++.|++++++ .|.|||++|||++++ ++||++++|++|++++.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 155 DEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999998653 367999999999997 589999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=379.49 Aligned_cols=216 Identities=31% Similarity=0.495 Sum_probs=187.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+++.....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999964211113599999999999999999999999999999999999999999999864
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++...++..|+.+|+.++....+....+..+++.++++.+||. +..++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 36999998743333349999998865444455556667788999999997 6788999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..+.++|+++.++ .|.|||++||+++++ ++||++++|++|++++.|+++++++.
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998643 468999999999997 58999999999999999999887764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=365.43 Aligned_cols=199 Identities=29% Similarity=0.437 Sum_probs=173.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH---QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred CeEEEEEEEEecCCC---eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 589999999996421 2599999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+.. .|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 78 ~~~~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSD-RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHK 156 (216)
T ss_pred HHHhceEEecCcccccc-ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 37999999754332 39999998765433333444556788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++. .||++++|++|++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 157 PPLLLADEPTGNLDPELSRDIMRLFEEFNRR--GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999998542 679999999999985 7999999999974
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=388.56 Aligned_cols=214 Identities=31% Similarity=0.473 Sum_probs=187.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+++|+++. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 mi~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 589999999997210 013699999999999999999999999999999999999999999999853
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|+||++..+. ..|+.+|+.++....+....+..+++.++++.+||.+..++++.+||||||||++|||||+.+
T Consensus 80 ~~~~ig~v~q~~~l~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 80 ARRQIGMIFQHFNLLS-SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred HhcCEEEEeCCCccCC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 3899999986432 249999998875444444555567788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..+++.|+++.++ .|+|||++||+++++ ++||++++|++|++++.|++++++..
T Consensus 159 p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998653 368999999999997 57999999999999999999988754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=377.92 Aligned_cols=215 Identities=38% Similarity=0.622 Sum_probs=188.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 3 ~~l~~~~l~~~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ--EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred ceEEEEeEEEEcCCCC--cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 3799999999997421 12599999999999999999999999999999999999999999999865
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++...++..|+.+|+.++....+...++..+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3799999874233334999999886544445555666778899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+++.|++++++ .|+|||++||+++++..||++++|++|+++..|++++++..
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999998653 36899999999999878999999999999999999887654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-53 Score=376.14 Aligned_cols=209 Identities=39% Similarity=0.572 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 3 ~~l~~~~l~~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 3 NIIEVEDLHFRYKDG----TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred ceEEEEEEEEEeCCC----CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 379999999999632 2599999999999999999999999999999999999999999999865
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++....+..|+.+|+.++....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3799999874333334999999876443344445556678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||||++||+.++.++++.|++++++ |.|||++|||++++ ++||++++|++|++++.|+++++
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999998643 68999999999997 68999999999999999998654
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=367.54 Aligned_cols=220 Identities=29% Similarity=0.424 Sum_probs=195.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
+++++++|+++|++ ..+++||||++++||+++|+||||||||||+|+|+|+++|++|+|.++++
T Consensus 3 ~lL~v~~l~k~FGG-----l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ia 77 (250)
T COG0411 3 PLLEVRGLSKRFGG-----LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77 (250)
T ss_pred ceeeeccceeecCC-----EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHH
Confidence 47999999999987 46999999999999999999999999999999999999999999999762
Q ss_pred ---eEEEecCCCCcccccCHHHHHHhhccCC------------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHH
Q 024738 101 ---KSFVFQNPDHQVVMPTVEADVAFGLGNL------------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 101 ---~~~v~q~~~~~~~~~tv~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq 165 (263)
++.-||.+..+..+ ||.||+..+.... ....++..+++.++|+++||.+.++++..+||+|||+
T Consensus 78 r~Gi~RTFQ~~rlF~~l-TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 78 RLGIARTFQITRLFPGL-TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred hccceeecccccccCCC-cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 67899998765555 9999998763311 1124566788999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ .|.||++|.|||..+ .+||||+||+.|+++++|+|+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 999999999999999999999999999999999999999753 469999999999997 799999999999999999999
Q ss_pred hHHhhhhhhhhhhhh
Q 024738 245 SILNFIKSRQSSYIE 259 (263)
Q Consensus 245 ~~~~~~~~~~~~~~~ 259 (263)
++.++ +...++|++
T Consensus 236 eV~~d-p~VieAYLG 249 (250)
T COG0411 236 EVRNN-PRVIEAYLG 249 (250)
T ss_pred HHhcC-HHhHHHhcC
Confidence 99886 445566754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-53 Score=377.70 Aligned_cols=215 Identities=34% Similarity=0.512 Sum_probs=185.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|++......++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974210012599999999999999999999999999999999999999999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++....+..|+.+|+.++........++..+++.++++.+||+ ...++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 26899998742233349999998764333344555566788999999997 6889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++|||++++ ++||++++|++|++++.|+++++.+.
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999854 368999999999997 58999999999999999999887653
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=364.52 Aligned_cols=207 Identities=36% Similarity=0.514 Sum_probs=178.4
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEEe
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFVF 105 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v~ 105 (263)
|+++|++++|++.. ...++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 47899999997521 012599999999999999999999999999999999999999999999865 489999
Q ss_pred cCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
|++..+. ..|+.+|+.++....+...+...+++.++++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 80 q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 158 (220)
T cd03293 80 QQDALLP-WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158 (220)
T ss_pred ccccccc-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 9975332 239999998764333344444456788999999999888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe--CCEEEEecCh
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME--DGKIVMQADG 243 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~--~G~i~~~g~~ 243 (263)
|+|||+.++..+++.|+++.++ .+.|||++||+++++ ++||++++|+ +|++++.++.
T Consensus 159 t~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 159 FSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999998543 357999999999987 5899999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=383.59 Aligned_cols=218 Identities=27% Similarity=0.373 Sum_probs=187.9
Q ss_pred cceEEEEeEEEEECCCcc--------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---
Q 024738 31 GVAIECSNLNYSITKKQR--------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~--------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--- 99 (263)
.++|+++||+++|+.+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 458999999999964210 124699999999999999999999999999999999999999999999853
Q ss_pred -------------ceEEEecCCCCccc-ccCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChH
Q 024738 100 -------------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGG 162 (263)
Q Consensus 100 -------------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 162 (263)
.++|+||++...++ ..|+.+|+.+++... ..+.++.++++.++++.+++. ..+++++.+||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 48999999742222 239999998764322 245566677888999999995 5789999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
|+|||+|||||+.+|++||+||||++||+.++.+++++|+++.++ .|.|+|+||||++.+. +||++++|++|++++.|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999998653 3689999999999984 79999999999999999
Q ss_pred ChhhHHhh
Q 024738 242 DGVSILNF 249 (263)
Q Consensus 242 ~~~~~~~~ 249 (263)
+++++++.
T Consensus 245 ~~~~i~~~ 252 (331)
T PRK15079 245 TYDEVYHN 252 (331)
T ss_pred CHHHHHcC
Confidence 99998764
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=365.88 Aligned_cols=210 Identities=30% Similarity=0.513 Sum_probs=184.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (236)
T TIGR03864 1 ALEVAGLSFAYGAR-----RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75 (236)
T ss_pred CEEEEeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhh
Confidence 48899999999753 599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++..++ ..|+.+|+.+.....+....+..+.+.++++.+|+.+.+++++.+|||||+||++|||||+.+|++|
T Consensus 76 i~~~~q~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 154 (236)
T TIGR03864 76 LGVVFQQPTLDL-DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALL 154 (236)
T ss_pred EEEeCCCCCCcc-cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 789999875433 3499999977543333334445567888999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||+|||+.++..+.+.|++++++ +|.|||++||+++++..||++++|++|++++.++++++.+.
T Consensus 155 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999998643 36799999999999877999999999999999999888764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=364.78 Aligned_cols=208 Identities=30% Similarity=0.401 Sum_probs=179.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++. ...++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred ceEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4799999999997421 012599999999999999999999999999999999999999999999853
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+.. .|+.+|+.++....+...++.++++.++++.+|+.+..++++.+||||||||++|||||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPD-FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV 161 (233)
T ss_pred HHHhccEEEEecCcccCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 37999999753322 399999987543223334455567889999999998889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
.+|++|||||||+|||+.++..+.+.|++++++ +|.|||++||+++++..+|++++|++|++++.++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999998643 3689999999999987678999999999998775
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=380.22 Aligned_cols=216 Identities=31% Similarity=0.496 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++++
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 47999999999974311113599999999999999999999999999999999999999999999853
Q ss_pred -----------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCCh
Q 024738 100 -----------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSG 161 (263)
Q Consensus 100 -----------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 161 (263)
.++|+||++..+.+..|+.+|+.++....+.+.++..+++.++++.++|. ...++++.+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg 179 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence 26899999753444459999998865333445555667788999999997 688999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEe
Q 024738 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 162 GqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~ 240 (263)
|||||++|||||+.+|++|||||||+|||+.++..+++.|.++.+ +|.|||+||||++++ +.||++++|++|++++.
T Consensus 180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999854 368999999999987 68999999999999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|+++++++.
T Consensus 258 g~~~~~~~~ 266 (320)
T PRK13631 258 GTPYEIFTD 266 (320)
T ss_pred CCHHHHhcC
Confidence 999887653
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=364.71 Aligned_cols=207 Identities=28% Similarity=0.406 Sum_probs=181.4
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (232)
T cd03218 1 LRAENLSKRYGKR-----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75 (232)
T ss_pred CeEEEEEEEeCCE-----EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhc
Confidence 5789999999753 599999999999999999999999999999999999999999999853
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++..+.. .|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus 76 ~i~~~~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 154 (232)
T cd03218 76 GIGYLPQEASIFRK-LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154 (232)
T ss_pred cEEEecCCcccccc-CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 37899998754332 39999998764333333344456778899999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||||+|||+.+++.+.+.|+++.+ .+.|||++||+++.+ +.||++++|++|+++..++.+++..
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999864 367999999999987 5899999999999999999888764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=365.10 Aligned_cols=213 Identities=32% Similarity=0.470 Sum_probs=183.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+++. ...++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 489999999997531 012599999999999999999999999999999999999999999998853
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++....+.......+.+.++++.+++.+..++++.+|||||+||++|||||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (233)
T cd03258 80 ARRRIGMIFQHFNLLS-SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN 158 (233)
T ss_pred HHhheEEEccCcccCC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 3799999986432 239999998764333333444456788899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|++|||||||+|||+.++..+.+.|++++++ .|+|||++||+++++ ++||++++|++|++++.++++++.+
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 159 PKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999998653 367999999999997 5799999999999999998887754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=372.12 Aligned_cols=211 Identities=26% Similarity=0.384 Sum_probs=184.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 6 ~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 6 NLVDMRGVSFTRGNR-----CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80 (269)
T ss_pred ceEEEeCeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHH
Confidence 479999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++..+. ..|+.+|+.++.... .....+..+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 81 ~~~~~i~~v~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 81 TVRKRMSMLFQSGALFT-DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred HHhhcEEEEecccccCC-CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 3789999875432 239999998754322 2233444556778999999998899999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.+++.+.+.|+++.++ .|.|||++|||++++ +.||++++|++|++++.|+++++.+.
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998653 368999999999997 57999999999999999999888764
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=360.64 Aligned_cols=201 Identities=33% Similarity=0.508 Sum_probs=176.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV-----TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75 (213)
T ss_pred CEEEeeEEEECCe-----eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE
Confidence 4789999999763 599999999999999999999999999999999999999999999864 379
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++....+...++..+++.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 76 ~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llll 154 (213)
T cd03301 76 MVFQNYALYP-HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154 (213)
T ss_pred EEecChhhcc-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875332 349999998764333344455566788899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||+|||+.++..+.+.|++++++ .+.|||++||+++++ .+||++++|++|++++.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQR-LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999998653 367999999999997 579999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=365.85 Aligned_cols=207 Identities=31% Similarity=0.456 Sum_probs=180.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 1 LEVRGLTKRFGGL-----VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred CeeeeeEEEECCE-----EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 4789999999753 599999999999999999999999999999999999999999998854
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCC----------ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL----------THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
.++|+||++..+.. .|+.+|+.++...... ...+..+++.++++.+|+++..++++.+||||||||++|
T Consensus 76 ~i~~v~q~~~l~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 76 GIGRTFQIPRLFPE-LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred CEEEEecccccccC-CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHH
Confidence 27899999864332 3999999876432211 123445678889999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||++|||++++ .+||++++|++|+++..|+++++.+
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999999864 368999999999998 5799999999999999999888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=372.67 Aligned_cols=210 Identities=31% Similarity=0.560 Sum_probs=184.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ml~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (271)
T PRK13638 1 MLATSDLWFRYQDE-----PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75 (271)
T ss_pred CeEEEEEEEEcCCc-----ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHH
Confidence 58999999999753 599999999999999999999999999999999999999999998854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++....+..++.+|+.++....+....+..+++.++++.+++.++.++++.+||||||||++|||||+.+|
T Consensus 76 ~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p 155 (271)
T PRK13638 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQA 155 (271)
T ss_pred HhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCC
Confidence 378999987533344478899877543333444455567788999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++++ ++||++++|++|++++.|++++++..
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ--GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998642 67999999999998 58999999999999999999887653
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=373.55 Aligned_cols=214 Identities=41% Similarity=0.606 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 4 EIIRVEHISFRYPDAA---TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred ceEEEEEEEEEeCCCC---ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 4799999999996421 3599999999999999999999999999999999999999999999865
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++...++..|+.+|+.++....+...++..+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3799999974223334999999876544344455556778899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+++.|+++.++ .|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999998653 36899999999999877999999999999999998887653
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=389.64 Aligned_cols=210 Identities=34% Similarity=0.491 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++
T Consensus 2 ~~L~~~nls~~y~~~-----~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 2 PMIDVSDLSVEFGDT-----TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred ceEEEeeEEEEECCE-----EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 379999999999763 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC--CC--ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL--NL--THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..++. .|+.+|+.++...+ .+ ...+.++++.++++.+++.++.++++.+||||||||++|||||+
T Consensus 77 ~~ig~v~q~~~l~~~-~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 77 RRVASVPQDTSLSFE-FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred cceEEEccCCCCCCC-CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 38999999865443 39999998763211 11 12344567889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|++|||||||+|||+.++.+++++|+++++ .|.|||++|||++++ ++||++++|++|++++.|+++++++.
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~--~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 99999999999999999999999999999874 367999999999998 68999999999999999999987654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=347.90 Aligned_cols=207 Identities=33% Similarity=0.551 Sum_probs=186.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
||.+++|+++|+.. =-.++++|+.||+++|+|||||||||||++|+|+..|.+|+|++++ .+
T Consensus 1 ~l~L~~V~~~y~~~-------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 1 MLALDDVRFSYGHL-------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred CccccceEEeeCcc-------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 47789999999752 3578999999999999999999999999999999999999999975 47
Q ss_pred EEEecCCCCcccccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
+++||+.+++... ||.+|+.++... .+++ .+.+++++.++.++||..+.++.|.+|||||||||+|||+|+++-+||
T Consensus 74 SmlFQEnNLFaHL-tV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 74 SMLFQENNLFAHL-TVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred hhhhhccccchhh-hhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 9999998865555 999999998643 2333 455678999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+||||||+|||.-+.+++.++.+++.+ ++.|++||||+++++ .++|+++++++|+|.+.|+..+++..
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E-~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999876 478999999999998 58999999999999999999998864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=373.45 Aligned_cols=213 Identities=34% Similarity=0.570 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 4 YILKVEELNYNYSDG----THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred ceEEEEeEEEEeCCC----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 379999999999632 2599999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|+||++....+..|+.+|+.++....+.+..+..+++.++++.+||.++.++++.+||||||||++|||||+.+
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~ 159 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 159 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 27999999753333459999998764433445555566788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++. +||++++|++|++++.|+++++.+.
T Consensus 160 p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999998653 3689999999999985 8999999999999999999887653
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-53 Score=362.08 Aligned_cols=201 Identities=38% Similarity=0.489 Sum_probs=172.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|++.. ...++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 57899999997521 002599999999999999999999999999999999999999999998853
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+.. .|+.+|+.++....+....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 80 RRRHIGFVFQSFNLLPD-LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred HhhcEEEEeeccccCCC-CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 37999998754322 39999998864433333334456788899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
|++|||||||+|||+.++..+.+.|++++++ .++|||++||+++++..||++++|++|++
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999998652 36899999999999889999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=376.93 Aligned_cols=207 Identities=29% Similarity=0.415 Sum_probs=185.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
+++++|++|+|+++ .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ .
T Consensus 2 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ 76 (301)
T TIGR03522 2 SIRVSSLTKLYGTQ-----NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRN 76 (301)
T ss_pred EEEEEEEEEEECCE-----EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhc
Confidence 58999999999753 599999999999999999999999999999999999999999999864 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..+..+ |+.+|+.+....++...++..+++.++++.+||.+..++++..||||||||++|||||+++|++|
T Consensus 77 ig~~~q~~~l~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (301)
T TIGR03522 77 IGYLPEHNPLYLDM-YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL 155 (301)
T ss_pred eEEecCCCCCCCCC-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999998644333 89999987654444444555667889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||||+|||+.+++.+++.|+++. + ++|||++||+++++ ++||++++|++|++++.|+++++..
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~-~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIG-K--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999984 2 47999999999998 5799999999999999999998865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=372.21 Aligned_cols=211 Identities=40% Similarity=0.611 Sum_probs=185.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+++|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 1 ml~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (274)
T PRK13644 1 MIRLENVSYSYPDG----TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIR 76 (274)
T ss_pred CEEEEEEEEEcCCC----CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHH
Confidence 58999999999632 2599999999999999999999999999999999999999999998864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++...++..|+.+|+.++....+....+..+++.++++.+||.+..++++.+||+||+||++|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE 156 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3799999975333334999999876433334455556778889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+++.|+++.+ .|.|||++||+++++..||++++|++|++++.|+++++...
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999864 36899999999999877999999999999999999887653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=372.58 Aligned_cols=217 Identities=40% Similarity=0.613 Sum_probs=188.8
Q ss_pred ceEEEEeEEEEECCCcc-ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 32 VAIECSNLNYSITKKQR-KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~-~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
++|+++|++++|++... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 48999999999974210 113699999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|+||++..+++..++.+|+.++....+....+..+++.++++.+||.++.++++.+||||||||++|||||+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 37899999754344448999998865443444555567788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..+.+.|+++.++ .|.|||++||+++++..||++++|++|+++..|+++++...
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998653 36899999999999866999999999999999999887653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=360.41 Aligned_cols=205 Identities=33% Similarity=0.448 Sum_probs=177.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
+|+++|++++|+++. ...++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+++ .
T Consensus 1 ~l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 488999999997531 011599999999999999999999999999999999999999999999864 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++..+. ..|+.+|+.+.....+....+..+++.++++.+|+.+.+++++.+||||||||++|||||+.+|++|
T Consensus 80 i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 80 LGFVSDSTGLYD-RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred EEEecCCcccCc-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 899999985332 2399999987543333444455677889999999999899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||||++||+.+++.+.+.|+++.+ .|.|||++||+++++ .+||++++|++|++++.|
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999854 367999999999987 589999999999998653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=360.19 Aligned_cols=206 Identities=29% Similarity=0.412 Sum_probs=179.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhE
Confidence 5789999999752 12599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+. ..|+.+|+.+.....+....+..+++.++++.+++.+..++++.+||+||+||++|||||+.+|++||
T Consensus 78 ~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 78 GYCPQFDALFD-ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred EEecCcCCccc-cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875332 34999999876433333344445678889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
|||||++||+.+++.+.+.|+++++ +.|||++||+++.+ ++||++++|++|++++.|+++++
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999853 37999999999998 57999999999999999987654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-52 Score=370.66 Aligned_cols=212 Identities=39% Similarity=0.577 Sum_probs=186.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+++++||+++|+++ ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (277)
T PRK13652 3 LIETRDLCYSYSGS----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78 (277)
T ss_pred eEEEEEEEEEeCCC----CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 69999999999642 2599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++....+..|+.+|+.++....+...++..+++.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l 158 (277)
T PRK13652 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158 (277)
T ss_pred heEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 37999999743333349999998754333445555566788999999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+|||+.++..+.+.|+++.++ .|.|||++||+++++ +.||++++|++|++++.|+++++++.
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999998653 368999999999998 68999999999999999999988653
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=387.44 Aligned_cols=216 Identities=30% Similarity=0.455 Sum_probs=187.4
Q ss_pred ceEEEEeEEEEECCCcc-------------------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 024738 32 VAIECSNLNYSITKKQR-------------------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~-------------------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~ 92 (263)
.+|+++||+|.|+.+.. +...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 36888888888876421 11237999999999999999999999999999999999999999
Q ss_pred eEEEEcC-----------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCC
Q 024738 93 GHVYVKR-----------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP 155 (263)
Q Consensus 93 G~I~~~~-----------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 155 (263)
|+|++++ .++|+||++..++. .|+.+|+.++....++...+..+++.++++.+||.++.+++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~-~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH-MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC
Confidence 9999853 48999999864433 39999998875444444555567788999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC
Q 024738 156 VQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED 234 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~ 234 (263)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++.++ .++|||++|||++++ ++||++++|++
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999998643 368999999999997 58999999999
Q ss_pred CEEEEecChhhHHhh
Q 024738 235 GKIVMQADGVSILNF 249 (263)
Q Consensus 235 G~i~~~g~~~~~~~~ 249 (263)
|+++..|+++++...
T Consensus 241 G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 241 GEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEecCCHHHHHhC
Confidence 999999999988754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-52 Score=362.01 Aligned_cols=209 Identities=29% Similarity=0.415 Sum_probs=183.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 1 ~l~~~~l~~~~~~~-----~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 1 MIEFKNVSKHFGPT-----QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred CEEEEeEEEEECCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHH
Confidence 48999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++.. ..+....+..+++.++++.+|+++.+++++.+||+|||||++|||||+.+
T Consensus 76 ~~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 76 RQEAGMVFQQFYLFP-HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred hhceEEEecccccCC-CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 3799999875433 2399999977531 12333444556788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..+.+.|++++++ +.|||++||+++++ ..||++++|++|++++.|++.++.+.
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999998642 68999999999998 57999999999999999999888653
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-52 Score=362.99 Aligned_cols=209 Identities=32% Similarity=0.470 Sum_probs=179.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|+++ .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 1 IEVENLSKTYPNG----KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred CEEeeEEEecCCc----cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 4789999999751 2599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCC--------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNL--------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
.++|++|++..+. ..|+.+|+.++.... +.......+++.++++.+++.+..++++.+||||||||++|
T Consensus 77 ~~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 77 RRQIGMIFQQFNLIE-RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HhccEEEcccCcccc-cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHH
Confidence 2789999875432 239999997653210 11123334667889999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||+.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++|||++++. +||++++|++|++++.|+++++.+
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhhH
Confidence 99999999999999999999999999999999998643 3679999999999985 899999999999999999888643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=371.57 Aligned_cols=215 Identities=38% Similarity=0.603 Sum_probs=188.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEEcC--------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN---GHVYVKR-------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~~-------- 99 (263)
+.+|+++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|.+++
T Consensus 3 ~~~l~i~~l~~~~~~~~---~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSK---KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred CceEEEEEEEEEcCCCC---ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 45899999999996421 259999999999999999999999999999999999999998 8999854
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
+++|+||++...++..|+.+|+.+.....+...++..+++.++++.++|.+..++++.+|||||+||++|||||+
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 479999997433333499999987654444555566677889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++..||++++|++|++++.|++++++..
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998653 36899999999999878999999999999999999887653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=370.54 Aligned_cols=208 Identities=31% Similarity=0.438 Sum_probs=182.4
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------------
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------------- 99 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------------- 99 (263)
.++|++++|++. .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 26 ~~~~~~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 100 (269)
T cd03294 26 SKEEILKKTGQT-----VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100 (269)
T ss_pred hhhhhhhhcCCc-----eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhh
Confidence 677999999764 589999999999999999999999999999999999999999998843
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+. ..|+.+|+.++....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|
T Consensus 101 ~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 101 RKKISMVFQSFALLP-HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred cCcEEEEecCcccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3799999875432 2399999987643333334444567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++ ++||++++|++|++++.|+++++++.
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999998653 368999999999997 58999999999999999999988754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=363.98 Aligned_cols=209 Identities=27% Similarity=0.422 Sum_probs=180.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+++|+.+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~----~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 1 MLEVENLSKVYPNG----KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred CeEEEeeeeecCCC----cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHH
Confidence 48899999999721 2599999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCC--------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNL--------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|+||++..+. ..|+.+|+.++.... +....+..+++.++++.+++....++++.+||||||||++
T Consensus 77 ~~~~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIE-RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVA 155 (243)
T ss_pred HHhheEEEcCCCcccc-cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 2799999875432 239999997653211 1112334567888999999998889999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ .|+|||++||+++++ ++||++++|++|++++.|+++++.
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 999999999999999999999999999999999998653 367999999999997 589999999999999999988763
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=370.04 Aligned_cols=215 Identities=34% Similarity=0.500 Sum_probs=183.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++......++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4899999999975210012599999999999999999999999999999999999999999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++....+..|+.+|+.++....+...++..+++.++++.+++. ...++++.+||||||||++|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 27899998632223349999998764333344445556778899999997 5679999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||++||+.+++.+.+.|++++++ +.|||++||+++++ .+||++++|++|++++.|+++++++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS--GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998642 67999999999998 58999999999999999999887653
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=376.53 Aligned_cols=195 Identities=29% Similarity=0.427 Sum_probs=174.6
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ceEEEecCCCCcccccCHHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PKSFVFQNPDHQVVMPTVEA 119 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~~~v~q~~~~~~~~~tv~~ 119 (263)
++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ .++|+||++..+... |+.+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~-tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL-TGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC-cHHH
Confidence 599999999999999999999999999999999999999999999865 389999997644333 9999
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 024738 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199 (263)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~ 199 (263)
|+.+....++....+..+++.++++.++|.+..++++.+||||||||++|||||+++|++|||||||+|||+.++..+++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 99876544444445556678899999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 200 AVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 200 ~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.|++++++ |.|||++||+++++ ++||++++|++|+++..|+++++.+.
T Consensus 166 ~l~~~~~~--g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 166 YIRALKEE--GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99998643 68999999999998 47999999999999999999887653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-52 Score=356.20 Aligned_cols=200 Identities=26% Similarity=0.425 Sum_probs=175.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------ceEEE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------PKSFV 104 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------~~~~v 104 (263)
|+++|++++|+++ ++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFGRV-----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75 (210)
T ss_pred CEEEEEEEEECCE-----EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEe
Confidence 5789999999753 599999999999999999999999999999999999999999999975 48999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+|++..+.. .|+.+|+.+.....+....+..+.+.++++.+++++..++++.+||||||||++|||||+.+|++|||||
T Consensus 76 ~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 76 PEERGLYPK-MKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred ccCCcCCcC-CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999854332 3999998875433333344555678899999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||+|||+.+++.+.+.|+++.++ +.|||++||+.+++ ++||++++|++|++++.|
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARA--GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999998643 57999999999997 579999999999998653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=356.91 Aligned_cols=194 Identities=32% Similarity=0.488 Sum_probs=169.0
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceEEE
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKSFV 104 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~~v 104 (263)
+++|++++|++. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|+
T Consensus 1 ~~~~l~~~~~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG----TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc----CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE
Confidence 468999999751 2599999999999999999999999999999999999999999999865 48999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+|++...++..|+.+|+.++..... . ..+++.++++.+++.++.++++.+||||||||++|||||+.+|++|||||
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 152 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELD--A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcC--c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9987433333499999987543221 1 12467789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV 238 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~ 238 (263)
||+|||+.+++.+.+.|++++++ |.|||++||+++++. +||++++|++|+++
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 153 PTSGLDYKNMERVGELIRELAAQ--GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999998643 679999999999984 79999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-52 Score=368.39 Aligned_cols=210 Identities=41% Similarity=0.657 Sum_probs=184.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|++. .++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 1 ~l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (275)
T PRK13639 1 ILETRDLKYSYPDG----TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76 (275)
T ss_pred CEEEEEEEEEeCCC----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHH
Confidence 48999999999642 2599999999999999999999999999999999999999999998864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++....+..|+.+|+.++....+...++..+++.++++.++|.++.++++.+|||||+||++|||||+.+|
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p 156 (275)
T PRK13639 77 RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156 (275)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 278999997423333499999987643333444455567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++++ ++||++++|++|++++.|+++++++
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKE--GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999998642 68999999999997 5899999999999999999998765
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-52 Score=365.24 Aligned_cols=204 Identities=32% Similarity=0.449 Sum_probs=178.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v 104 (263)
||+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|+
T Consensus 1 ml~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v 75 (255)
T PRK11248 1 MLQISHLYADYGGK-----PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75 (255)
T ss_pred CEEEEEEEEEeCCe-----eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEE
Confidence 58999999999753 599999999999999999999999999999999999999999999965 37999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+|++..+. ..|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 76 ~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE 154 (255)
T PRK11248 76 FQNEGLLP-WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154 (255)
T ss_pred eCCCccCC-CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99975432 23999999875433333444455678899999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe--CCEEEEecCh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME--DGKIVMQADG 243 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~--~G~i~~~g~~ 243 (263)
||+|||+.++..+.+.|++++++ .|.|||++|||++++ ..||++++|+ +|++++.++.
T Consensus 155 Pt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 155 PFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999998543 368999999999997 5799999998 5999988654
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=362.66 Aligned_cols=209 Identities=32% Similarity=0.426 Sum_probs=182.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (250)
T PRK11264 3 AIEVKNLVKKFHGQ-----TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77 (250)
T ss_pred cEEEeceEEEECCe-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchh
Confidence 69999999999753 599999999999999999999999999999999999999999998743
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++..+. ..|+.+|+.++.. .......+..+++.++++.+|+....++++.+||||||||++||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 78 GLIRQLRQHVGFVFQNFNLFP-HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hHHHHhhhhEEEEecCcccCC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence 3799999875332 2399999976432 12233344456778899999999888999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++++ ++||++++|++|++++.|+++++.+.
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998642 67999999999998 57999999999999999999888653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=357.95 Aligned_cols=206 Identities=27% Similarity=0.331 Sum_probs=176.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|++.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 4799999999997521 002489999999999999999999999999999999999999999998853
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+. ..|+.+|+.++.........+..+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIP-TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred HHHhheEEEEEcccccCC-CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 3799999875333 2389999887542223333445667889999999998889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEe
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++|||+++++.||++++|++|++++.
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE-HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999998653 36799999999998877999999999998753
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=382.99 Aligned_cols=196 Identities=30% Similarity=0.453 Sum_probs=178.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------------ceEEEecCCCCcccc
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------------PKSFVFQNPDHQVVM 114 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------------~~~~v~q~~~~~~~~ 114 (263)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ .++|+||++..++..
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 599999999999999999999999999999999999999999999854 489999998654433
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~ 194 (263)
|+.+|+.++....++..++..+++.++++.+||+.+.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 87 -TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 87 -TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 9999999876555566666677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
..+.+.|.++.++ .++|||+||||++++ +.||+|++|++|+++..|++++++..
T Consensus 166 ~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 166 DSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999998653 368999999999997 68999999999999999999998764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=354.99 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=193.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|.++|+.|+|+++ +++++|||++++||++||+|||||||||.+.++.|+.+|++|+|.+++
T Consensus 4 ~L~a~~l~K~y~kr-----~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 4 TLVAENLAKSYKKR-----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred EEEehhhhHhhCCe-----eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 69999999999875 599999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChH--HHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD--EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.+||+||++..+-.+ ||.+|+...+.....+.+ +.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.+
T Consensus 79 lGigYLpQE~SIFr~L-tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 79 LGIGYLPQEASIFRKL-TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cCcccccccchHhhcC-cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 379999998754434 999999877655433323 4455688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-hhcCCEEEEEeCCEEEEecChhhHHhhhhhhhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILNFIKSRQS 255 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 255 (263)
|+++||||||+|+||.+..++.++++.+.. +|..|+|+-|+..+ +.+|||.++|.+|++.++|+++++.++ +....
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n-~~Vr~ 234 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN-EDVRR 234 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC-hhhhh
Confidence 999999999999999999999999999864 47899999999988 689999999999999999999999886 34445
Q ss_pred hhhh
Q 024738 256 SYIE 259 (263)
Q Consensus 256 ~~~~ 259 (263)
.|++
T Consensus 235 ~YLG 238 (243)
T COG1137 235 VYLG 238 (243)
T ss_pred hccc
Confidence 5653
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-52 Score=361.85 Aligned_cols=210 Identities=30% Similarity=0.436 Sum_probs=182.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|++. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 l~~~~l~~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 1 IEFENVTKRYGGG----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred CEEEEEEEEeCCc----ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 4789999999751 2599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc--ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN--YLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
++|++|++..+. ..|+.+|+.++....+....+..+++.++++.+++.. +.++++.+||||||||++|||||+.+|+
T Consensus 77 i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 77 IGYVIQQIGLFP-HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred eEEEccCccccC-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 799999875432 2499999987543333334445567889999999985 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++ ++||++++|++|++++.++++++.+.
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999998653 367999999999987 58999999999999999998887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=375.05 Aligned_cols=217 Identities=30% Similarity=0.393 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEECCCcc-----ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQR-----KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~-----~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------- 99 (263)
++|+++||++.|+.+.. +...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47999999999964211 124699999999999999999999999999999999999999999999854
Q ss_pred ---------ceEEEecCCCCccc-ccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
+++|+||++...+. ..++.+++....... .....+..+++.++++.+||. ..+++++.+|||||+|||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 48999999842222 228888886554322 344555667889999999997 478999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++||+||||++||+..+.+++++|+++.++ .|.|+|+||||++.+. +||+|++|++|++++.|+++++
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998653 4689999999999985 7999999999999999999998
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
++.
T Consensus 243 ~~~ 245 (327)
T PRK11308 243 FNN 245 (327)
T ss_pred hcC
Confidence 875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-52 Score=356.09 Aligned_cols=197 Identities=33% Similarity=0.448 Sum_probs=171.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+++ .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~----~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (214)
T TIGR02673 1 MIEFHNVSKAYPGG----VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76 (214)
T ss_pred CEEEEeeeEEeCCC----ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 48999999999522 2599999999999999999999999999999999999999999998854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 77 ~~~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 77 LRRRIGVVFQDFRLLP-DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred HHhheEEEecChhhcc-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 3789999985332 249999998764333333444456788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK 236 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~ 236 (263)
|++|||||||+|||+.++..+.+.|+++.++ +.|||++||+++++. +||++++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999998542 679999999999985 799999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=358.87 Aligned_cols=202 Identities=34% Similarity=0.508 Sum_probs=175.5
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEEcC---------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-----KPTNGHVYVKR--------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----~p~~G~I~~~~--------- 99 (263)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.+++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 1 IELRDLNVYYGDK-----HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred CEEEEEEEEcCCc-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH
Confidence 5789999999753 5999999999999999999999999999999999999 99999998854
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHhhccCCCCCh-HHHHHHHHHHHHHcCCCcccCCC--CCCCChHHHHHHHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH-DEVRSKVAKALDAVGMSNYLQRP--VQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lA 170 (263)
.++|++|++..+ ..|+.+|+.++....+... .+..+++.++++.+|+.+..+++ +.+||||||||++||
T Consensus 76 ~~~~~~~i~~~~q~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 76 VLELRRRVGMVFQKPNPF--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHHHHhhEEEEecCchhc--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 378999997643 3499999987643332222 23456788899999998876766 599999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|||+.+|++|||||||+|||+.++..+++.|+++++ + .|||++|||++++ ++||++++|++|++++.|++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999864 2 6999999999997 5899999999999999988765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=367.43 Aligned_cols=215 Identities=36% Similarity=0.576 Sum_probs=186.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 5 ~~~l~~~nl~~~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 5 SVMIKVENVSFSYPNSE---NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred ceEEEEEeEEEEcCCCC---ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 35899999999996321 3699999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++...++..|+.+|+.++........++..+.+.++++.+++.+..++++.+|||||+||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 379999997422223499999987643333444455567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+++.|+++.++ ++.|||++||+++++..||++++|++|+++..|+++++...
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998653 34799999999999878999999999999999998877653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-52 Score=356.79 Aligned_cols=203 Identities=30% Similarity=0.410 Sum_probs=173.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++. ...++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 ~l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 1 LLKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred CEEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 378999999996421 113599999999999999999999999999999999999999999999853
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|++|++..+. ..|+.+|+.+..........+..+++.++++.+|+++..++++.+||||||||++|||||+.
T Consensus 80 ~~~~~i~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLP-DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN 158 (221)
T ss_pred HHHhcEEEEecccccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 3899999875332 23999999875432223333445667889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEE
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~ 238 (263)
+|++|||||||+|||+.++..+.+.|++++++ .+.|||++|||++++..||++++|++|+++
T Consensus 159 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 159 QPSLVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999998643 357999999999998778999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=359.64 Aligned_cols=208 Identities=33% Similarity=0.452 Sum_probs=181.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T PRK11124 2 SIQLNGINCFYGAH-----QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76 (242)
T ss_pred EEEEEeeEEEECCe-----eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhh
Confidence 68999999999753 599999999999999999999999999999999999999999999853
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHhh-ccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAFG-LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++..+.. .|+.+|+.+. ....+....+..+++.++++.+|+....++++.+||||||||++||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 77 IRELRRNVGMVFQQYNLWPH-LTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHHHhheEEEecCccccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 37899998764322 3999998643 222233344445678889999999988999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|+|++||+++++ ++||++++|++|++++.|+++++.+
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999854 368999999999998 5799999999999999999887643
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=369.39 Aligned_cols=215 Identities=31% Similarity=0.465 Sum_probs=183.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|+++.....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 6999999999975310012499999999999999999999999999999999999999999998753
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 173 (263)
.++|++|++....+..|+.+|+.++....+...++..+++.++++.++|. ++.++++.+||||||||++|||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 37899998743333349999998764333333444456678899999995 688999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+.+|++|||||||+|||+.++..+++.|+++.++ .|+|||++||+++++ ++||++++|++|++++.|+++++.+
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998653 368999999999987 5899999999999999999888754
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=355.61 Aligned_cols=200 Identities=29% Similarity=0.411 Sum_probs=174.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++|++++|+.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 76 (222)
T PRK10908 1 MIRFEHVSKAYLGG----RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPF 76 (222)
T ss_pred CEEEEeeEEEecCC----CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHH
Confidence 48999999999421 2599999999999999999999999999999999999999999998854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..++ ..|+.+|+.++....+...++..+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 77 ~~~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 77 LRRQIGMIFQDHHLLM-DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred HHhheEEEecCccccc-cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 3789999975333 349999998764333344445556778899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVM 239 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~ 239 (263)
|++|||||||++||+.+++.+.+.|+++.++ +.|+|++||+++++. .||++++|++|+++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999998543 579999999999985 799999999999864
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-52 Score=356.91 Aligned_cols=204 Identities=32% Similarity=0.441 Sum_probs=176.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (222)
T cd03224 1 LEVENLNAGYGKS-----QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75 (222)
T ss_pred CEEeeEEeecCCe-----eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhc
Confidence 5789999999753 599999999999999999999999999999999999999999999854
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-CCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-GMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++..+.. .|+.+|+.++..... ..+..+++.++++.+ ++.+..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~-~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 76 GIGYVPEGRRIFPE-LTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred CeEEeccccccCCC-CcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 37999999854332 399999987643322 223345566788888 58888899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||||+|||+.++..+++.|+++++ .+.|||++||+++++ .+||++++|++|+++..++++++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999864 367999999999997 579999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=364.64 Aligned_cols=215 Identities=35% Similarity=0.535 Sum_probs=186.4
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 5 ~~~l~i~~l~~~~~~~~---~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA---SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred CceEEEEEEEEEcCCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 34799999999997531 2589999999999999999999999999999999999999999999965
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++...+...++.+|+.++........++..+++.++++.+++.+..++++.+||+|||||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 379999997423333488999887644333444455567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++..||++++|++|++++.|+++++.+.
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998643 36899999999999866999999999999999999887653
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=366.83 Aligned_cols=215 Identities=33% Similarity=0.456 Sum_probs=197.6
Q ss_pred eEEEEeEEEEECCCcc-------------------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 33 AIECSNLNYSITKKQR-------------------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~-------------------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
.|+++|++|-|+++.. +...-++|+||+++.|||++|+|-||||||||+|++.+|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 6999999999986521 112367999999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCC
Q 024738 94 HVYVKR-----------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV 156 (263)
Q Consensus 94 ~I~~~~-----------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 156 (263)
+|.+++ ++++|||+..+.++. ||.+|+.|++...+.+.++.++++.++++.+||+.+.+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr-tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR-TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch-hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 999964 479999998866655 99999999999889999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCC
Q 024738 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G 235 (263)
.+|||||||||.|||||+.+|++||+|||||+|||--+.++.+.|.++.++ -++|||+||||++++ ++.|||.+|++|
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~-l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK-LKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH-hCCeEEEEecCHHHHHhccceEEEecCC
Confidence 999999999999999999999999999999999999999999999998765 358999999999996 899999999999
Q ss_pred EEEEecChhhHHhh
Q 024738 236 KIVMQADGVSILNF 249 (263)
Q Consensus 236 ~i~~~g~~~~~~~~ 249 (263)
+|+..|+|+++..+
T Consensus 242 ~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 242 EIVQVGTPEEILLN 255 (386)
T ss_pred eEEEeCCHHHHHcC
Confidence 99999999999875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=362.28 Aligned_cols=209 Identities=33% Similarity=0.484 Sum_probs=182.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (258)
T PRK13548 2 MLEARNLSVRLGGR-----TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76 (258)
T ss_pred eEEEEeEEEEeCCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhh
Confidence 68999999999753 599999999999999999999999999999999999999999999865
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh-----
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA----- 174 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~----- 174 (263)
.++|++|++..++. .|+.+|+.++........++..+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 77 ~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~ 155 (258)
T PRK13548 77 RRAVLPQHSSLSFP-FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP 155 (258)
T ss_pred heEEEccCCcCCCC-CCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 37899999764333 399999987543222222334456788999999998899999999999999999999999
Q ss_pred -hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 175 -EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 175 -~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
.+|++|||||||+|||+.++..+.+.|+++.++ .|.|||++|||++++ .+||++++|++|++++.|+++++.+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 156 DGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 599999999999999999999999999998633 367999999999998 5899999999999999999888765
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=379.82 Aligned_cols=197 Identities=31% Similarity=0.453 Sum_probs=177.4
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------------------ceEEEecCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------------------PKSFVFQNPD 109 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------------------~~~~v~q~~~ 109 (263)
..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ .++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999964 3899999986
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
.++. .|+.+|+.++....+....+..+++.++++.+||+++.++++.+||||||||++|||||+.+|++|||||||++|
T Consensus 117 l~p~-~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 117 LMPW-LTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred CCCC-CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 5433 399999998764444555566678889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+..+.++.+.|.++.++ .++|||++|||++++ ++||++++|++|++++.|+++++...
T Consensus 196 D~~~r~~l~~~L~~l~~~-~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 196 DPLIRTQLQDELLELQAK-LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999998653 368999999999997 68999999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-52 Score=354.39 Aligned_cols=197 Identities=47% Similarity=0.696 Sum_probs=169.8
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ce
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PK 101 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~ 101 (263)
+++|++++|++.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 ~~~~l~~~~~~~~---~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (211)
T cd03225 1 ELKNLSFSYPDGA---RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77 (211)
T ss_pred CceeEEEecCCCC---eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc
Confidence 4689999997521 2599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++....+..|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 157 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999874322334999999875433333334445678889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK 236 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~ 236 (263)
|||||+|||+.++..+.+.|++++++ |.|||++|||++++. +||++++|++|+
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999998653 689999999999985 699999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=366.04 Aligned_cols=214 Identities=36% Similarity=0.547 Sum_probs=186.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++++
T Consensus 4 ~l~~~~l~~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKES--DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCC--cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 799999999997421 13589999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++....+..|+.+|+.++....+....+..+++.++++.++|.++.++++.+|||||+||++|||||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 37999999742233349999998764333344445556788999999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||++||+.++..+.+.|++++++ .|.|||++||+++++..||++++|++|++++.|++++++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEK-YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999998653 36899999999999877999999999999999999887653
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=353.46 Aligned_cols=197 Identities=31% Similarity=0.435 Sum_probs=171.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 76 (214)
T cd03292 1 IEFINVTKTYPNG----TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76 (214)
T ss_pred CEEEEEEEEeCCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4789999999642 2599999999999999999999999999999999999999999998864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+. ..|+.+|+.++....+...++..+++.++++.+++++..++++.+||||||||++|||||+.+|
T Consensus 77 ~~~i~~v~q~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 77 RRKIGVVFQDFRLLP-DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred HHheEEEecCchhcc-CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCC
Confidence 3799999975432 2399999987643333334455567889999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
+++||||||++||+.+++.+.+.|+++.++ |.|||++||+++++. +||++++|++|++
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999998542 679999999999985 7999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=360.58 Aligned_cols=210 Identities=29% Similarity=0.365 Sum_probs=183.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (257)
T PRK10619 4 NKLNVIDLHKRYGEH-----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78 (257)
T ss_pred ccEEEeeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccc
Confidence 479999999999753 599999999999999999999999999999999999999999998754
Q ss_pred --------------ceEEEecCCCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCCccc-CCCCCCCChHH
Q 024738 100 --------------PKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNYL-QRPVQTLSGGQ 163 (263)
Q Consensus 100 --------------~~~~v~q~~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq 163 (263)
.++|++|++..+.. .|+.+|+.++. ........+..+++.++++.+|+.+.. ++++.+|||||
T Consensus 79 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~-~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 79 LKVADKNQLRLLRTRLTMVFQHFNLWSH-MTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred cccccchHHHHHhhceEEEecCcccCCC-CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 37999999764332 39999987643 222333445566788999999998764 88999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.+ .|+|||++|||++++. +||++++|++|++++.|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999864 3689999999999985 799999999999999999
Q ss_pred hhhHHhh
Q 024738 243 GVSILNF 249 (263)
Q Consensus 243 ~~~~~~~ 249 (263)
++++...
T Consensus 236 ~~~~~~~ 242 (257)
T PRK10619 236 PEQLFGN 242 (257)
T ss_pred HHHhhhC
Confidence 9887653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=354.35 Aligned_cols=199 Identities=37% Similarity=0.498 Sum_probs=170.7
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEEec
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFVFQ 106 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v~q 106 (263)
+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|
T Consensus 1 ~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 1 EVEDLTVSYGGH-----PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred CcccceeEECCE-----EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 468999999753 599999999999999999999999999999999999999999999976 3899999
Q ss_pred CCCCccc-ccCHHHHHHhhccCCC----CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 107 NPDHQVV-MPTVEADVAFGLGNLN----LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 107 ~~~~~~~-~~tv~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
++..... ..|+.+|+.++..... ....+..+++.++++.+++++..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 155 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9764322 2499999987543211 1123345678889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
|||||+|||+.++..+.+.|+++++ .|.|||++|||++++ ++||++++|++| +++.|
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 156 LDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999864 367999999999998 579999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=352.75 Aligned_cols=196 Identities=29% Similarity=0.440 Sum_probs=172.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGKK-----RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75 (208)
T ss_pred CEEEEEEEEECCe-----EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE
Confidence 4789999999653 599999999999999999999999999999999999999999999965 378
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++...... ..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 76 ~~~q~~~~~~-~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 76 ALIEAPGFYP-NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred EecCCCccCc-cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875332 34999999876432222 134577889999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||+|||+.+++.+.+.|+++++ .+.|||++|||++++ ++||++++|++|++++.|
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999864 367999999999998 579999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=358.53 Aligned_cols=209 Identities=23% Similarity=0.363 Sum_probs=182.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (241)
T PRK10895 3 TLTAKNLAKAYKGR-----RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77 (241)
T ss_pred eEEEeCcEEEeCCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 79999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+.. .|+.+|+.+..... ....++.+..+.++++.+++.+..++++.+|||||+||++|||||+.+|
T Consensus 78 ~~i~~~~q~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 78 RGIGYLPQEASIFRR-LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred hCeEEeccCCccccc-CcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 37999998754322 39999998753222 2233444567888999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.+.++.+ .|.|||++||+++++ +.||++++|++|++++.|+++++.+.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999998854 367999999999887 58999999999999999999888653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=357.56 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=181.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 2 ILYLEGLSVSFDGF-----KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred eEEEEeeEEEcCCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 68999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC--------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL--------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++..+.. .|+.+|+.++.... ....++.++++.++++.+|+.+..++++.+|||||+||++||
T Consensus 77 ~~i~~~~q~~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 77 AGIGRKFQKPTVFEN-LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred cCeeEeccccccCCC-CCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 27899998754332 39999998753211 011233456788899999999889999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++++ ++||++++|++|++++.|+++++..
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999999853 47999999999998 4799999999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-51 Score=358.57 Aligned_cols=207 Identities=32% Similarity=0.449 Sum_probs=181.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----ceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-----NGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~~-------- 99 (263)
+|+++||+++|++. .+++|+||+|++||+++|+|+||||||||+|+|+|+++|+ +|+|.+++
T Consensus 1 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 1 AIEIENLNLFYGEK-----EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred CEEEEEEEEEECCe-----eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 48999999999753 5999999999999999999999999999999999999998 99998853
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+. .|+.+|+.++....+ ....+..+++.++++.+|+. +..++++.+||||||||+
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred chHHHHhheEEEecCcccCC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 3799999976433 599999987643322 23344556788899999998 778899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++++ ..||++++|++|+++..|+++++
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK---KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999854 26999999999987 57999999999999999999988
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
++.
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=362.00 Aligned_cols=200 Identities=32% Similarity=0.472 Sum_probs=176.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEE
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSF 103 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~ 103 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|
T Consensus 11 ~~l~i~~l~~~~~~~-----~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~ 85 (257)
T PRK11247 11 TPLLLNAVSKRYGER-----TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRL 85 (257)
T ss_pred CcEEEEEEEEEECCc-----ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEE
Confidence 469999999999753 599999999999999999999999999999999999999999999864 4899
Q ss_pred EecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
++|++..+.. .|+.+|+.++.. . ...+++.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus 86 v~q~~~l~~~-~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 86 MFQDARLLPW-KKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred EecCccCCCC-CcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999764332 399999987531 1 12356778999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|||+|||+.++..+.+.|+++.++ .+.|||++|||++++ ++||++++|++|+++++++.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999998653 367999999999997 589999999999999987653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=352.90 Aligned_cols=198 Identities=27% Similarity=0.419 Sum_probs=173.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++|++++|+++ ++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.+++ .+
T Consensus 1 i~~~~~~~~~~~~-----~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 74 (211)
T cd03264 1 LQLENLTKRYGKK-----RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74 (211)
T ss_pred CEEEEEEEEECCE-----EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhhe
Confidence 5789999999753 5999999999999 9999999999999999999999999999999865 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+. ..|+.+|+.+.....+....+..+.+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 75 ~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 153 (211)
T cd03264 75 GYLPQEFGVYP-NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153 (211)
T ss_pred EEecCCCcccc-cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999986432 23999999875432233334445678889999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
|||||+|||+.+++.+.+.|+++++ +.|||++|||++++ ++||++++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELGE---DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999853 37999999999998 579999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=357.03 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=196.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------ceEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------PKSF 103 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------~~~~ 103 (263)
+|++++|+|+|+++ .+++|+||++++|++.|++|||||||||.+|+|.|++.|++|+|.|++ +|||
T Consensus 2 ~L~ie~vtK~Fg~k-----~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFGDK-----KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76 (300)
T ss_pred ceEEecchhccCce-----eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhccc
Confidence 69999999999975 599999999999999999999999999999999999999999999987 6999
Q ss_pred EecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
+|.+..++.-+ ||.+.+.|.+...+++.++.+.++..||+++++..+..+++.+||.|++|++.+..|++|+|+++|||
T Consensus 77 LPEERGLy~k~-tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 77 LPEERGLYPKM-TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred ChhhhccCccC-cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 99998877665 99999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHh
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||||||.+.+.+.+.+.++.+ .|.|||++||.|+.++ .||+++.|++|+.|.+|+.+++..
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999864 4799999999999995 799999999999999999998876
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=372.77 Aligned_cols=215 Identities=25% Similarity=0.308 Sum_probs=183.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEEcC---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK----PTNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----p~~G~I~~~~--------- 99 (263)
+|+++||++.|+.+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 699999999997532 11359999999999999999999999999999999999997 4899999864
Q ss_pred --------ceEEEecCCCCccc-ccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqR 166 (263)
.++|+||++...+. ..++.+++...+... +...++.++++.++++.+||.+ .+++++.+|||||+||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 38999999842222 227777765543322 3344566678899999999963 5789999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|+|||||+.+|++||+||||++||+.++.+++++|+++.++ .|.|+|+||||++.+ ++||+|++|++|++++.|++++
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998653 468999999999998 5899999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+++.
T Consensus 241 ~~~~ 244 (326)
T PRK11022 241 IFRA 244 (326)
T ss_pred HhhC
Confidence 8865
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=359.89 Aligned_cols=211 Identities=23% Similarity=0.341 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (255)
T PRK11300 4 PLLSVSGLMMRFGGL-----LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78 (255)
T ss_pred ceEEEeeEEEEECCE-----EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHH
Confidence 379999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccC----------CC---C--ChHHHHHHHHHHHHHcCCCcccCCCCCCCChH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGN----------LN---L--THDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~----------~~---~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 162 (263)
.++|+||++..+.. .|+.+|+.++... .. . ...+..+.+.++++.+|+.+..++++.+||||
T Consensus 79 ~~~i~~~~q~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 79 RMGVVRTFQHVRLFRE-MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYG 157 (255)
T ss_pred hcCeEEeccCcccCCC-CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHH
Confidence 26789998764332 3999999875321 00 0 11123356778899999998899999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++++ .|.|||++||+++++ ++||++++|++|++++.|
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999998653 368999999999998 579999999999999999
Q ss_pred ChhhHHhh
Q 024738 242 DGVSILNF 249 (263)
Q Consensus 242 ~~~~~~~~ 249 (263)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99887653
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=365.05 Aligned_cols=222 Identities=30% Similarity=0.397 Sum_probs=190.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-C----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-P----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p----~~G~I~~~~-------- 99 (263)
.|+++||+.+|.... +...+++||||++++||++||+|+|||||||+.+.|+|+++ | .+|+|.|++
T Consensus 1 lL~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 1 LLEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred CceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 378999999997532 23579999999999999999999999999999999999997 4 578998864
Q ss_pred ---------ceEEEecCCCCcccc-cCHHHHHHhhccCC-CC-ChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHH
Q 024738 100 ---------PKSFVFQNPDHQVVM-PTVEADVAFGLGNL-NL-THDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqk 164 (263)
.|+++||+|...+.. .++.+.+.-.+... +. ..++..+++.++|+.+||.+ .++.+|.+||||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 489999998544322 17777776555432 23 45677889999999999974 67999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||.||.||+.+|++||+||||++||+..+.+++++|+++.+ +.|+++|+||||+..+ ++||||.||..|+|++.|++
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~ 238 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPV 238 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCH
Confidence 999999999999999999999999999999999999999987 4589999999999997 68999999999999999999
Q ss_pred hhHHhhhhhhhhh
Q 024738 244 VSILNFIKSRQSS 256 (263)
Q Consensus 244 ~~~~~~~~~~~~~ 256 (263)
++++++..+-++.
T Consensus 239 ~~i~~~P~HPYT~ 251 (316)
T COG0444 239 EEIFKNPKHPYTR 251 (316)
T ss_pred HHHhcCCCChHHH
Confidence 9999875554443
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=361.98 Aligned_cols=216 Identities=32% Similarity=0.469 Sum_probs=183.4
Q ss_pred eEEEEeEEEEECCCc----cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------
Q 024738 33 AIECSNLNYSITKKQ----RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~----~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------- 99 (263)
+|+++||+++|++.. .....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 699999999996310 0013699999999999999999999999999999999999999999999854
Q ss_pred -------ceEEEecCCCC-cccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHH
Q 024738 100 -------PKSFVFQNPDH-QVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 -------~~~~v~q~~~~-~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 169 (263)
.++|++|++.. .....|+.+|+.+..... .....+..+++.++++.+++. ...++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 38999998732 222349999987654321 233334456788899999996 67899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||+.+|++|||||||++||+.++..+.+.|+++.++ .|.|||++|||++.+. +||++++|++|++++.|++++++.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999999998653 3689999999999985 899999999999999999999876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 241 ~ 241 (265)
T TIGR02769 241 F 241 (265)
T ss_pred C
Confidence 3
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-51 Score=353.67 Aligned_cols=215 Identities=28% Similarity=0.426 Sum_probs=182.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
||+++||+++|++. ..|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .+
T Consensus 1 ~l~~~~l~~~~~~~-------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 73 (232)
T PRK10771 1 MLKLTDITWLYHHL-------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV 73 (232)
T ss_pred CeEEEEEEEEECCc-------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccE
Confidence 48999999999742 2399999999999999999999999999999999999999999865 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..+.. .|+.+|+.++........+...+++.++++.+|+++..++++.+||||||||++||||++.+|++||
T Consensus 74 ~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 152 (232)
T PRK10771 74 SMLFQENNLFSH-LTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL 152 (232)
T ss_pred EEEecccccccC-CcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998753332 3999999875321101122345668889999999989999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhhhhhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSRQSSY 257 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 257 (263)
|||||+|||+.++..+.+.|+++.++ .|.|||++||+++++ ++||++++|++|++++.|+++++.... .....|
T Consensus 153 LDEP~~gLD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~-~~~~~~ 227 (232)
T PRK10771 153 LDEPFSALDPALRQEMLTLVSQVCQE-RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK-ASASAL 227 (232)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh-hHHHHh
Confidence 99999999999999999999998653 367999999999997 579999999999999999998887653 344444
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=361.44 Aligned_cols=210 Identities=29% Similarity=0.416 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 10 ~~l~i~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 10 TTFALRNVSFRVPGR-----TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84 (265)
T ss_pred ceEEEeeEEEEECCE-----EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHh
Confidence 479999999999753 599999999999999999999999999999999999999999999865
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+. ..|+.+|+.++.... +.......+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 85 ~~i~~v~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 85 RKVAYLPQQLPAAE-GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred hheEEeccCCCCCC-CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3799999875433 238999998753211 1112233456788999999998899999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
.+|++|||||||+|||+.++..+.+.|.+++++ .|.|||++||+++++ +.||++++|++|++++.|+++++..
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999999998653 367999999999998 5899999999999999999888764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=355.81 Aligned_cols=207 Identities=24% Similarity=0.344 Sum_probs=179.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 5 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 5 MLSFDKVSAHYGKI-----QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred EEEEEeEEEeeCCc-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHH
Confidence 79999999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-CCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-GMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+. ..|+.+|+.++.... ...+..+.+.++++.+ ++.+..++++.+||||||||++|||||+.+|
T Consensus 80 ~~i~~~~q~~~~~~-~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 80 EAVAIVPEGRRVFS-RMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred hCEEEeccCcccCC-CCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 3789999875432 239999998753211 2233344566778888 5777778899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++++ ++||++++|++|++++.|+++++...
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998643 68999999999987 68999999999999999999988653
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=371.48 Aligned_cols=215 Identities=22% Similarity=0.320 Sum_probs=181.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC----CCceEEEEcC---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK----PTNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~----p~~G~I~~~~--------- 99 (263)
+|+++||+++|+.+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|++++
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 799999999995321 12369999999999999999999999999999999999996 5899999854
Q ss_pred --------ceEEEecCCCCccc-ccCHHHHHHhhccCC---C---CChHHHHHHHHHHHHHcCCCc---ccCCCCCCCCh
Q 024738 100 --------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL---N---LTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSG 161 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~---~---~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSg 161 (263)
.++|+||++...+. ..++.+++....... + ....+..+++.++++.+||.+ .+++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 38999999853222 238888886532211 1 111344567889999999974 46899999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEe
Q 024738 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 162 GqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~ 240 (263)
||+|||+|||||+.+|++|||||||++||+.++.+++++|+++.++ .|.|||+||||++++ ++||++++|++|+|++.
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998653 368999999999998 57999999999999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|+++++++.
T Consensus 241 g~~~~i~~~ 249 (330)
T PRK15093 241 APSKELVTT 249 (330)
T ss_pred CCHHHHHhC
Confidence 999998764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=370.36 Aligned_cols=217 Identities=25% Similarity=0.320 Sum_probs=184.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcC--------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKR-------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~-------- 99 (263)
.++|+++||+++|+... +...+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++
T Consensus 10 ~~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 35899999999996421 1246999999999999999999999999999999999999996 99999854
Q ss_pred ---------ceEEEecCCCCccc-ccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVV-MPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkq 165 (263)
.++|+||++...++ ..++.+++...+... +....+..+++.++++.++|.+ .+++++.+|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 48999999842222 227888876544322 2445555677889999999974 357899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++||+||||++||+.++..++++|+++.++ .|.|+|+||||++.+. +||++++|++|++++.|+++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998653 4689999999999984 79999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++++.
T Consensus 248 ~i~~~ 252 (330)
T PRK09473 248 DVFYQ 252 (330)
T ss_pred HHHhC
Confidence 98864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-51 Score=358.95 Aligned_cols=208 Identities=33% Similarity=0.496 Sum_probs=181.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (255)
T PRK11231 2 TLRTENLTVGYGTK-----RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76 (255)
T ss_pred EEEEEeEEEEECCE-----EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhh
Confidence 69999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccC----CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGN----LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++..+.. .|+.+|+.++... .+.......+++.++++.+++.+..++++.+|||||+||++||||++.
T Consensus 77 ~i~~~~q~~~~~~~-~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 77 RLALLPQHHLTPEG-ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred heEEecccCCCCCC-ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 37999998753322 3899999875211 111123345567889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++++ +.||++++|++|+++..|+++++.+
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQ--GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999999998542 67999999999997 5899999999999999999888765
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-51 Score=357.23 Aligned_cols=209 Identities=28% Similarity=0.410 Sum_probs=180.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.+++
T Consensus 4 ~~~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 4 PPKMEARGLSFFYGDF-----QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred CcEEEEeeeEEEECCe-----eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 4589999999999753 59999999999999999999999999999999999974 6899998854
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+. .|+.+|+.++....+. ..++..+++.++++.+++.+ .+++++.+|||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 3799999975432 4999999876433222 23344567788999999853 468889999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++|||++++ +.||++++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~--~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A--RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c--CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 2 47999999999998 589999999999999999998
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++++.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=357.96 Aligned_cols=209 Identities=28% Similarity=0.436 Sum_probs=181.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------ 99 (263)
.++|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+++
T Consensus 10 ~~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 10 QPQIKVENLNLWYGEK-----QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred ceeEEEeeeEEEeCCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 3589999999999753 599999999999999999999999999999999999975 899998843
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. .|+.+|+.++....+...++..+++.++++.+++. +.+++++.+|||||+||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 3799999876432 49999998764333334444456678899999983 45788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+++.|+++. + +.|||++|||++++ ++||++++|++|++++.|++++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K--DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 2 47999999999997 5899999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+++.
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-51 Score=360.14 Aligned_cols=212 Identities=34% Similarity=0.478 Sum_probs=183.3
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------- 99 (263)
++.+|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~~~~l~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 4 SVARLRGEQLTLGYGKY-----TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cccEEEEEEEEEEECCE-----EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHH
Confidence 34589999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhcc-CCC---CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLG-NLN---LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|+||++..+. ..++.+|+.++.. ... ...+...+++.++++.+++.+..++++.+||||||||++||||
T Consensus 79 ~~~~i~~v~q~~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 79 VARRIGLLAQNATTPG-DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred HhhheEEeeccCcCCC-CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHH
Confidence 3799999975433 2399999876521 111 1122334567889999999988999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+.+|++|||||||+|||+.++..+.+.|.++.++ .|.|||++||+++++ ++||++++|++|++++.|+++++..
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999998643 368999999999987 6899999999999999999888764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=357.06 Aligned_cols=209 Identities=33% Similarity=0.443 Sum_probs=182.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 75 (252)
T TIGR03005 1 VRFSDVTKRFGIL-----TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75 (252)
T ss_pred CEEEEEEEEeCCe-----eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccc
Confidence 4789999999753 599999999999999999999999999999999999999999998753
Q ss_pred ------------ceEEEecCCCCcccccCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH
Q 024738 100 ------------PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ------------~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. ..|+.+|+.++.. ..+....+..+.+.++++.+|+.+..++++.+|||||+||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 76 PADEKHLRQMRNKIGMVFQSFNLFP-HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQR 154 (252)
T ss_pred ccchhHHHHHhhCeEEEecCcccCC-CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHH
Confidence 3789999875332 2399999987421 1223344455678889999999988999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ .|.|+|++||+++++ .+||++++|++|++++.|++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998653 368999999999998 5899999999999999999988
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 234 ~~~~ 237 (252)
T TIGR03005 234 IFRQ 237 (252)
T ss_pred HhcC
Confidence 8754
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=357.10 Aligned_cols=213 Identities=25% Similarity=0.345 Sum_probs=181.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~~~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 4 QPLLSVRGLTKLYGPR-----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred CceEEEeeeEEEcCCc-----eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 3479999999999753 599999999999999999999999999999999999999999998754
Q ss_pred -----------ceEEEecCCCCcccc-cCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHH
Q 024738 100 -----------PKSFVFQNPDHQVVM-PTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 -----------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq 165 (263)
.++|++|++...... .++.+|+.+...... ....+..+++.++++.+++. ..+++++.+|||||+|
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 278999997422222 278888765432111 12234456778899999997 4788999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ .|.|||++||+++++. +||++++|++|++++.|+++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998653 3689999999999985 79999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++...
T Consensus 238 ~~~~~ 242 (258)
T PRK11701 238 QVLDD 242 (258)
T ss_pred HHhcC
Confidence 88754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-51 Score=348.05 Aligned_cols=199 Identities=32% Similarity=0.512 Sum_probs=171.0
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ . .|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 1 i~~~~l~~~~~~~-----~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ-----P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE-----e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEE
Confidence 4789999999752 2 399999999999999999999999999999999999999999965 379
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++........++.++++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 74 ~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llll 152 (211)
T cd03298 74 MLFQENNLFA-HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLL 152 (211)
T ss_pred EEecccccCC-CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999986432 239999998754311111223455678899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||+|||+.++..+.+.|++++++ .+.|||++||+++++ ++||++++|++|++++.|
T Consensus 153 DEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 153 DEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999998643 368999999999998 579999999999998653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=349.38 Aligned_cols=196 Identities=33% Similarity=0.461 Sum_probs=171.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (213)
T cd03262 1 IEIKNLHKSFGDF-----HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75 (213)
T ss_pred CEEEEEEEEECCe-----EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHH
Confidence 4789999999753 599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+. ..|+.+|+.++.. ..+....+..+++.++++.+++.+..++++.+|||||+||++|||||+.+|
T Consensus 76 ~~i~~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 76 QKVGMVFQQFNLFP-HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred hcceEEecccccCC-CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 2789999985332 2399999987532 223334445567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
++|||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++ ++||++++|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999864 267999999999998 57999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=359.79 Aligned_cols=217 Identities=27% Similarity=0.420 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEECCCcc----ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------
Q 024738 32 VAIECSNLNYSITKKQR----KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~----~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------- 99 (263)
++|+++||+++|+++.. +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 47999999999963210 113699999999999999999999999999999999999999999999864
Q ss_pred -----ceEEEecCCCCccc-ccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVV-MPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~-~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAr 171 (263)
.++|+||++...+. ..++.+++.+.... ......+..+.+.++++.+++. ...++++.+||||||||++|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 37999998742222 22788888765332 1233444456788899999995 6778899999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+.+|++|||||||++||+.+++.+.+.|.++.++ .|.|||++||+++++. +||++++|++|++++.|+++++.+.
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 999999999999999999999999999999998653 3679999999999985 7999999999999999999888764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=350.68 Aligned_cols=207 Identities=38% Similarity=0.468 Sum_probs=171.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 ~l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence 478999999997531 012599999999999999999999999999999999999999999998853
Q ss_pred ---ceEEEecCCCCccc-ccCHHHHHHhhccCCCCC-hHHHHHH-HHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVV-MPTVEADVAFGLGNLNLT-HDEVRSK-VAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++...+. ..|+.+|+.++....... ..+..+. +.++++.+++. ...++++.+||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 37999999732222 239999998754322211 1222222 35789999995 67899999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
|+.+|++|||||||+|||+.+++.+.+.|++++++ .|.|||++||+++++. +||++++|++|+++..|
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999998653 2579999999999985 89999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=353.17 Aligned_cols=205 Identities=34% Similarity=0.529 Sum_probs=179.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 77 (241)
T PRK14250 3 EIEFKEVSYSSFGK-----EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77 (241)
T ss_pred eEEEEeEEEEeCCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhh
Confidence 69999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+ ..|+.+|+.++..... ....++.++++.+++. +..++++.+||||||||++|||||+.+|+
T Consensus 78 ~i~~~~q~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 78 KIGMVFQQPHLF--EGTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred cEEEEecCchhc--hhhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 379999997543 2499999876532211 1134577889999997 57899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.+++.+.+.|+++.++ .|.|||++|||++++ +.||++++|++|++++.+++.+++..
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998643 367999999999997 57999999999999999999988753
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=353.77 Aligned_cols=208 Identities=31% Similarity=0.438 Sum_probs=180.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFGQV-----EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEECCe-----eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 69999999999753 599999999999999999999999999999999999974 799999864
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++..+ ...|+.+|+.++...... ...+..+.+.++++.+++.+ .+++++.+||||||||++
T Consensus 78 ~~~~~~i~~v~q~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 78 IELRRRVQMVFQIPNPI-PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHhccEEEEeccCccC-CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 379999997533 234999999876432221 23444567888999999853 578999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|+|++||+++++ +.||++++|++|++++.|+++++.
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c--CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9999999999999999999999999999999999984 2 57999999999997 589999999999999999999887
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 54
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=353.93 Aligned_cols=208 Identities=27% Similarity=0.395 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|++++
T Consensus 6 ~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 6 AIIETENLNLFYTDF-----KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred ceEEEeeeEEEeCCc-----eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 379999999999753 599999999999999999999999999999999999987 489998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCC----CcccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.++....+. ...+..+++.++++.+++ .+..++++.+||||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~-~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPF-L-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred ccHHHHhhceEEEeeccccc-c-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 379999997643 2 4999999876432222 233445677888999987 356788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+++.|+++. + +.|||++||+++++ +.||++++|++|+++..|++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E--SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 2 47999999999997 5799999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+.+.
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=353.54 Aligned_cols=209 Identities=31% Similarity=0.422 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 3 FAIETVNLRVYYGSN-----HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred ceEEEEeEEEEeCCe-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 479999999999753 599999999999999999999999999999999999987 499998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+. ..|+.+|+.++....+. ..++..+++.++++.+++. ..+++++.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPFP-HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred cChHHHhhceeEEecCCccCC-CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 3789999975432 23999999875432221 2334456678889999984 3578899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ .+||++++|++|++++.|+++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK---EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999853 37999999999997 579999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 88754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=346.52 Aligned_cols=200 Identities=33% Similarity=0.514 Sum_probs=172.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
++++||+++|+. +++|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 1 ~~~~~l~~~~~~-------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceE
Confidence 478999999963 46899999999999999999999999999999999999999999864 379
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.++.........+.++++.++++.+++.+..++++.+||+||+||++|||||+.+|+++||
T Consensus 74 ~v~q~~~~~~-~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 152 (213)
T TIGR01277 74 MLFQENNLFA-HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLL 152 (213)
T ss_pred EEeccCccCC-CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999986432 239999997653221111223345677899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
||||++||+.++..+.+.|+++.++ .+.|||++||+++++ +.||++++|++|++++.|+
T Consensus 153 DEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 153 DEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998643 368999999999997 5799999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=382.50 Aligned_cols=227 Identities=34% Similarity=0.433 Sum_probs=196.4
Q ss_pred CcceEEEEeEEEEECCCc------cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----
Q 024738 30 SGVAIECSNLNYSITKKQ------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~------~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---- 99 (263)
..+.++++||+++|..+. .+...+++||||++.+||++||||+||||||||.|+|+|+.+|++|+|.+++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 467899999999998421 2346799999999999999999999999999999999999999999999965
Q ss_pred -----------ceEEEecCCCCcccc-cCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHH
Q 024738 100 -----------PKSFVFQNPDHQVVM-PTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 -----------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkq 165 (263)
++-++||+|...... .||.+.+..++.... ....+.++++.++++.++|.. +++++|.+|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 367899998644332 299999887765432 224555678999999999985 799999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|++|||||+||+..+.+++++|+++.++ -|.|+|+||||+..++ .||||++|++|+|++.|+.+
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e-~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE-LGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH-hCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999765 5799999999999996 69999999999999999999
Q ss_pred hHHhhhhhhhhhh
Q 024738 245 SILNFIKSRQSSY 257 (263)
Q Consensus 245 ~~~~~~~~~~~~~ 257 (263)
+++++..+.++..
T Consensus 516 ~v~~~p~h~Ytr~ 528 (539)
T COG1123 516 KVFENPQHPYTRK 528 (539)
T ss_pred HHhcCCCChHHHH
Confidence 9998755554443
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=355.45 Aligned_cols=208 Identities=27% Similarity=0.438 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcC---------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKR--------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~--------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+++
T Consensus 3 ~~l~~~nl~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 3 TIIRVEKLAKTFNQH-----QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred cEEEEeeEEEEeCCe-----EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 479999999999753 5999999999999999999999999999999999999986 49998765
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCC--------CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNL--------NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG 162 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 162 (263)
.++|+||++..+. ..|+.+|+.++.... ....++.++++.++++.+|+.+..++++.+||+|
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVN-RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred chhHHHHHhheEEEcccccccc-CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 2689999976433 239999998653210 1112334567889999999998889999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++|||++++ .+||++++|++|++++.|
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998653 368999999999987 689999999999999999
Q ss_pred ChhhH
Q 024738 242 DGVSI 246 (263)
Q Consensus 242 ~~~~~ 246 (263)
+++++
T Consensus 236 ~~~~~ 240 (262)
T PRK09984 236 SSQQF 240 (262)
T ss_pred CHHHh
Confidence 99886
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=343.82 Aligned_cols=218 Identities=29% Similarity=0.410 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+..|+.. ++|++|||++++||+++|+|+||||||||||+|+|+.+|.+|+|.|.+
T Consensus 2 ~mL~v~~l~~~YG~~-----~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~ 76 (237)
T COG0410 2 PMLEVENLSAGYGKI-----QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76 (237)
T ss_pred CceeEEeEeecccce-----eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHH
Confidence 489999999999874 699999999999999999999999999999999999999999999975
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-CCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-GMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++||||....+..+ ||.||+.++...... ........+++.+.| .|.+..+++..+|||||||.++|||||+.+
T Consensus 77 r~Gi~~VPegR~iF~~L-TVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 77 RLGIAYVPEGRRIFPRL-TVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred hCCeEeCcccccchhhC-cHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 389999988755544 999999987533221 111122266677777 477889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhhhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSRQS 255 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 255 (263)
|++|+|||||.||-|.-.+++.+.|+++.++ .|+||++|.++...+ +++||.++|.+|+++.+|+.+++.++. ....
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~-~v~~ 232 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP-DVRE 232 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH-HHHH
Confidence 9999999999999999999999999999754 468999999999996 799999999999999999999998763 3444
Q ss_pred hhh
Q 024738 256 SYI 258 (263)
Q Consensus 256 ~~~ 258 (263)
.|+
T Consensus 233 ~yL 235 (237)
T COG0410 233 AYL 235 (237)
T ss_pred Hhh
Confidence 454
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=350.67 Aligned_cols=204 Identities=34% Similarity=0.430 Sum_probs=175.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++||++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (230)
T TIGR03410 1 LEVSNLNVYYGQS-----HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75 (230)
T ss_pred CEEEeEEEEeCCe-----EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHh
Confidence 5789999999753 599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-CCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-MSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+. ..|+.+|+.++....+.. ..+...++++.++ +....++++.+|||||+||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~-~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 76 GIAYVPQGREIFP-RLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred CeEEeccCCcccC-CCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3799999986433 239999998764332221 1233466777776 5777899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHH
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||||+|||+.++..+.+.|.+++++ .+.|||++||+++++. +||++++|++|++++.|+++++.
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999998653 3689999999999985 79999999999999999988873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=354.88 Aligned_cols=207 Identities=35% Similarity=0.472 Sum_probs=180.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 2 l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (256)
T TIGR03873 2 LRLSRVSWSAGGR-----LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76 (256)
T ss_pred ceEEeEEEEECCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh
Confidence 6899999999753 599999999999999999999999999999999999999999999865 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccC----CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGN----LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
++|++|++..++ ..|+.+|+.++... ......+..+++.++++.+++.+..++++.+|||||+||++|||||+.+
T Consensus 77 i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 77 VALVEQDSDTAV-PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred eEEecccCccCC-CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 789999875333 34999999875211 1111223345678899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+++||||||+|||+.++..+.+.|+++.+ +|.|||++||+++++ +.||++++|++|++++.|+++++..
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999864 367999999999998 6899999999999999999888755
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=351.04 Aligned_cols=207 Identities=28% Similarity=0.356 Sum_probs=175.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcC------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKR------------ 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~------------ 99 (263)
|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR01978 1 LKIKDLHVSVEDK-----EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75 (243)
T ss_pred CeEeeEEEEECCE-----EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhh
Confidence 5789999999753 5999999999999999999999999999999999995 79999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCC-------CChHHHHHHHHHHHHHcCCC-cccCCCCC-CCChHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-------LTHDEVRSKVAKALDAVGMS-NYLQRPVQ-TLSGGQKQRVA 168 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~ 168 (263)
.++|++|++..+.. .|+.+|+.+...... ....+..+++.++++.+++. ...++++. +||||||||++
T Consensus 76 ~~~i~~v~q~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 76 RAGLFLAFQYPEEIPG-VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred ccceEeeeccccccCC-cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 16899999864332 389999876432111 12233446678899999997 56788887 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecChhhH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~~~ 246 (263)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ .|.|||++|||++++. . ||++++|++|++++.|+++++
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 99999999999999999999999999999999999864 3679999999999985 6 899999999999999988765
Q ss_pred Hh
Q 024738 247 LN 248 (263)
Q Consensus 247 ~~ 248 (263)
..
T Consensus 233 ~~ 234 (243)
T TIGR01978 233 KE 234 (243)
T ss_pred cc
Confidence 43
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=369.89 Aligned_cols=201 Identities=26% Similarity=0.445 Sum_probs=178.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||++ ||+|+|++. .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~-~l~k~~~~~------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~ 72 (352)
T PRK11144 1 MLEL-NFKQQLGDL------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLP 72 (352)
T ss_pred CeEE-EEEEEeCCE------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 5788 999999752 23 89999999999999999999999999999999999999998743
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++..++. .|+.+|+.++... ...+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 73 ~~~~~i~~v~q~~~l~~~-~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 73 PEKRRIGYVFQDARLFPH-YKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred hhhCCEEEEcCCcccCCC-CcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 37899999864433 3999999876421 224567889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||++||+..+..+++.|+++.++ .|.|+|+||||++++ .+||++++|++|+++..|++++++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998653 368999999999987 57999999999999999999998765
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=347.26 Aligned_cols=200 Identities=30% Similarity=0.413 Sum_probs=175.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------ceEEE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------PKSFV 104 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------~~~~v 104 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|+
T Consensus 1 l~l~~v~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGKQ-----TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75 (223)
T ss_pred CEEEeEEEEECCE-----EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEE
Confidence 5789999999753 599999999999999999999999999999999999999999999865 47899
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
||++..+.. .|+.+|+.++....+.. .+++.++++.+++++..++++.+||+||+||++||||++.+|++|||||
T Consensus 76 ~q~~~~~~~-~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 76 IESPPLYEN-LTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred cCCCCcccc-CCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 998754332 39999997654322222 2456788999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
||+|||+.+++.+++.|+++++ .|.|||++|||++++ +.||++++|++|+++..|++.+
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999854 267999999999998 5899999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=351.03 Aligned_cols=211 Identities=28% Similarity=0.368 Sum_probs=179.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|++. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (253)
T TIGR02323 3 LLQVSGLSKSYGGG-----KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSE 77 (253)
T ss_pred eEEEeeeEEEeCCc-----eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCH
Confidence 79999999999753 589999999999999999999999999999999999999999998853
Q ss_pred ---------ceEEEecCCCCcccc-cCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVM-PTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++...+.. .++.+|+.+...... ....+..+.+.++++.+++. ...++++.+|||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 269999987432222 277788754321111 11123346778899999997 578999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|.|||+|||+++++. .||++++|++|++++.++++++
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD-LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999997643 3689999999999985 7999999999999999999888
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
...
T Consensus 237 ~~~ 239 (253)
T TIGR02323 237 LDD 239 (253)
T ss_pred hcC
Confidence 653
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-50 Score=352.84 Aligned_cols=207 Identities=29% Similarity=0.448 Sum_probs=180.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~-------- 99 (263)
+|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 13 ~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 13 KIQVRNLNFYYGKF-----HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred eEEEEEEEEEeCCe-----EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 79999999999753 59999999999999999999999999999999999986 5899998853
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+. .|+.+|+.++.... ..+..+..+++.++++.+++. ...++++.+|||||+||+
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred chHHHhcceEEEecCCccCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 3789999975432 49999998764322 234445556788899999974 457889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.+++.+.+.|+++. + +.|||++||+++.+ .+||++++|++|++++.|+++++
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q--DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 2 47999999999998 58999999999999999999988
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
.+.
T Consensus 243 ~~~ 245 (260)
T PRK10744 243 FTK 245 (260)
T ss_pred HhC
Confidence 753
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-50 Score=347.60 Aligned_cols=209 Identities=38% Similarity=0.495 Sum_probs=183.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++ .++
T Consensus 1 l~~~~l~~~~~~~-----~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF-----VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe-----eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceE
Confidence 4689999999753 599999999999999999999999999999999999999999999864 479
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.+.....+.......+++.++++.+|+.+.+++.+.+||+||+||++|||||+.+|+++||
T Consensus 76 ~~~q~~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llll 154 (232)
T cd03300 76 TVFQNYALFP-HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLL 154 (232)
T ss_pred EEecccccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976432 239999998764433333444556778899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||+|||+.++..+.+.|+++.++ .|.|||++||+++++ +.||++++|++|++++.++..++...
T Consensus 155 DEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 155 DEPLGALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999998653 368999999999997 57999999999999999998887653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=347.45 Aligned_cols=208 Identities=34% Similarity=0.491 Sum_probs=182.5
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|++ ++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++ .++
T Consensus 1 l~~~~l~~~~~~------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEE
Confidence 468999999974 379999999999999999999999999999999999999999999865 479
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.+.....+....+..+.+.++++.+++.+..++++.+|||||+||++||||++.+|++++|
T Consensus 75 ~~~q~~~~~~-~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 153 (235)
T cd03299 75 YVPQNYALFP-HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLL 153 (235)
T ss_pred EEeecCccCC-CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999875332 249999998764333333445556778899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||+|||+.+++.+++.|++++.+ .+.|+|++||+++++ +.||++++|++|++++.++++++.+.
T Consensus 154 DEPt~gLD~~~~~~l~~~l~~~~~~-~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 154 DEPFSALDVRTKEKLREELKKIRKE-FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999998653 368999999999997 57999999999999999998887654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=352.92 Aligned_cols=210 Identities=27% Similarity=0.427 Sum_probs=180.8
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-----
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR----- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~----- 99 (263)
++.+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|++++
T Consensus 16 ~~~~l~~~nl~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 16 TEIKMRARDVSVFYGEK-----QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CCceEEEEeEEEEECCE-----EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 34589999999999753 599999999999999999999999999999999999975 899999854
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQ 163 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGq 163 (263)
.++|++|++..+ . .|+.+|+.++....+. ...+..+++.++++.+++.+ .+++++.+|||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPF-P-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred cccchHHHhhceEEEecCCCCC-C-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 279999997643 2 3999999876432222 23344566788999999963 5678899999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++.+ ..||++++|++|++++.|+
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999853 46999999999998 5799999999999999999
Q ss_pred hhhHHhh
Q 024738 243 GVSILNF 249 (263)
Q Consensus 243 ~~~~~~~ 249 (263)
+++++..
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14235 246 TEKMFTN 252 (267)
T ss_pred HHHHHhC
Confidence 9888753
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=347.53 Aligned_cols=209 Identities=36% Similarity=0.490 Sum_probs=182.3
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++|++++|+++ ++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++ .++
T Consensus 1 i~i~~l~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF-----QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe-----eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEE
Confidence 4789999999753 599999999999999999999999999999999999999999998853 479
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++..+. ..|+.+|+.+.....+.......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||
T Consensus 76 ~~~q~~~~~~-~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llll 154 (237)
T TIGR00968 76 FVFQHYALFK-HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLL 154 (237)
T ss_pred EEecChhhcc-CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875332 239999998764333333334456678899999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||+|||+.++..+++.|.+++++ .++|||++||+++++ +.||++++|++|++++.|+.+++...
T Consensus 155 DEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999998643 358999999999997 57999999999999999999888653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=354.33 Aligned_cols=209 Identities=31% Similarity=0.430 Sum_probs=176.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKS 102 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~ 102 (263)
+|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 6 ~l~~~~l~~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG----HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC----cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEE
Confidence 69999999999632 2599999999999999999999999999999999999999999999865 389
Q ss_pred EEecCCCCcccc-cCHHHHHHhhcc----CCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 103 FVFQNPDHQVVM-PTVEADVAFGLG----NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 103 ~v~q~~~~~~~~-~tv~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
|++|++...... .++.+++.++.. ..........+++.++++.+|+.+..++++.+||||||||++|||||+.+|
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p 161 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQG 161 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999987532222 267777654321 011112233456778899999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
++|||||||+|||+.++..+.+.|++++++ |.|||++||+++++ +.||+++++ +|+++..|+++++.+
T Consensus 162 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~--g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 162 QVILLDEPFTGVDVKTEARIISLLRELRDE--GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 999999999999999999999999998642 68999999999987 689999877 899999999988754
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=367.36 Aligned_cols=201 Identities=27% Similarity=0.492 Sum_probs=176.6
Q ss_pred eEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------------c
Q 024738 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------------P 100 (263)
Q Consensus 38 nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------------~ 100 (263)
||+++|++. .+ |+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .
T Consensus 4 ~l~~~~~~~------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~ 76 (354)
T TIGR02142 4 RFSKRLGDF------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76 (354)
T ss_pred EEEEEECCE------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCC
Confidence 899999753 34 99999999999999999999999999999999999999998753 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..+.. .|+.+|+.++.... ...+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|
T Consensus 77 i~~v~q~~~l~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 77 IGYVFQEARLFPH-LSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred eEEEecCCccCCC-CcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 7899999864433 39999998865322 22334556889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||+|||+.++..+++.|++++++ .|.|||++|||++++ .+||++++|++|+++..|+++++...
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 999999999999999999999998653 368999999999997 57999999999999999999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=350.60 Aligned_cols=209 Identities=27% Similarity=0.413 Sum_probs=179.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--P---TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p---~~G~I~~~~------ 99 (263)
.++|+++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|++++
T Consensus 10 ~~~l~i~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 10 QEVYQINGMNLWYGQH-----HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred CceEEEeeEEEEECCe-----eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 4589999999999753 59999999999999999999999999999999999987 3 699998753
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+ ..|+.+|+.++....+. ..++..+++.++++.+++. +.+++++.+|||||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPF--PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred ccCHHHHhhceEEEecCCccc--ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 378999997643 24999999875433222 2344456677889999985 3568899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|+|++||+++.+ +.||++++|++|++++.|+++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999842 47999999999997 589999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
+++..
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98754
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=329.62 Aligned_cols=205 Identities=31% Similarity=0.404 Sum_probs=186.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++++++..+... ....||++|+|.|++||.++|+|||||||||||-+++|+..|++|+|++.+
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 799999999998653 346899999999999999999999999999999999999999999999843
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
++|||||...+.+.+ |..||+.+++...+....+....+.++|+.+||.+.++.+|.+|||||+|||+|||||+.
T Consensus 85 ~R~~~vGfVFQSF~Lip~l-tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~ 163 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNL-TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG 163 (228)
T ss_pred hhccceeEEEEeeeccccc-hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC
Confidence 589999998765555 899999998776665555566778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEe
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
.|++|+.||||-+||..+-+++.+++-.+.++ .|+|.|+||||...+..|+|.+.|.+|+++++
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999998764 68999999999999999999999999999753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=350.92 Aligned_cols=208 Identities=27% Similarity=0.438 Sum_probs=179.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 4 ~l~i~~v~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYGSF-----HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEECCE-----eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 79999999999753 599999999999999999999999999999999999974 799999854
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++..+. ..|+.+|+.++....+. ..++..+.+.++++.+++. +..++++.+||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFP-TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred ChHHHhcceEEEccccccCC-CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 3789999875432 23999999876432222 2344456778889999984 467889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe------CCEEEEe
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME------DGKIVMQ 240 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~------~G~i~~~ 240 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++ +.||++++|+ +|++++.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ---DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999999999999999999999999999999999842 36999999999997 5899999997 8999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|++++++..
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 999988753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=384.31 Aligned_cols=208 Identities=22% Similarity=0.365 Sum_probs=182.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~~i~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 3 ALLQLKGIDKAFPGV-----KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred ceEEEeeeEEEeCCe-----EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCC---C-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNL---N-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
.++|++|++..+.. .|+.+|+.++.... . ....+.++++.++++.+|+.+..++++.+|||||||||+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 78 EAGIGIIHQELNLIPQ-LTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred hCCEEEEEcchhccCC-CcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 37999999754333 39999998764321 1 22344456788899999999888999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+.+|++|||||||++||+.++..+++.|+++.++ |.|||++|||++++ .+||++++|++|+++..++++++.
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQ--GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998543 68999999999998 589999999999999999887653
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=382.58 Aligned_cols=205 Identities=26% Similarity=0.424 Sum_probs=182.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 10 ~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 84 (510)
T PRK15439 10 PLLCARSISKQYSGV-----EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84 (510)
T ss_pred ceEEEEeEEEEeCCc-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+.. .|+.+|+.++... ..+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus 85 ~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 85 QLGIYLVPQEPLLFPN-LSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred hCCEEEEeccCccCCC-CcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 37899999764333 3999999876421 2234567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
++|||||||+|||+.++..+.+.|++++++ |.|||++|||++++ .+||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQ--GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998643 68999999999998 5899999999999999999887653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-51 Score=333.86 Aligned_cols=221 Identities=28% Similarity=0.378 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
+.|+++|+.|+|+.. .+|++|||+-++|+++.|+|.|||||||+||||.=|.+|+.|.|.+++
T Consensus 5 ~~l~v~dlHK~~G~~-----eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~ 79 (256)
T COG4598 5 NALEVEDLHKRYGEH-----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79 (256)
T ss_pred cceehhHHHhhcccc-----hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCC
Confidence 469999999999975 599999999999999999999999999999999999999999999864
Q ss_pred --------------ceEEEecCCCCcccccCHHHHHHhh-ccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHH
Q 024738 100 --------------PKSFVFQNPDHQVVMPTVEADVAFG-LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 --------------~~~~v~q~~~~~~~~~tv~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 164 (263)
+.++|||+.++...+ |+.+|+.-+ ....+.++.+..++++.+|.++|+.+..+.+|..|||||+
T Consensus 80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm-tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHM-TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred eeeCCHHHHHHHHHHhhHhhhhcchhHHH-HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 268999998755444 999997653 3345677888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~ 243 (263)
||++|||||+.+|+++|+|||||+|||+-.-++++.+++++++ |+|.++|||.+.+++ .+.+|+++++|.|-++|+|
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE--grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE--GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh--CCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999999999999864 689999999999995 6999999999999999999
Q ss_pred hhHHhh-hhhhhhhhhhh
Q 024738 244 VSILNF-IKSRQSSYIER 260 (263)
Q Consensus 244 ~~~~~~-~~~~~~~~~~~ 260 (263)
++++.+ ...+...|++.
T Consensus 237 ~qvf~nP~S~RlkqFlss 254 (256)
T COG4598 237 EQVFGNPQSPRLKQFLSS 254 (256)
T ss_pred HHHhcCCCCHHHHHHHHh
Confidence 999975 45566677653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=354.00 Aligned_cols=210 Identities=30% Similarity=0.373 Sum_probs=180.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--------ceEEEEcC-----
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT--------NGHVYVKR----- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~--------~G~I~~~~----- 99 (263)
||+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|+ +|+|.+++
T Consensus 1 ml~~~nl~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 1 MLTADHLHVARRHR-----AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred CeEEEEEEEEECCE-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 58999999999753 5999999999999999999999999999999999999998 99999865
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++...+. .|+.+|+.++.... +....+..+.+.++++.+++.+..++++.+|||||+|||
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFA-FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARV 154 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCC-CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 26899998753333 49999997753111 111233445678899999999889999999999999999
Q ss_pred HHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 168 AIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 168 ~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
+|||||+ .+|++|||||||+|||+.++..+.+.|+++.++ .|.|||++||+++++ ++||++++|++|++
T Consensus 155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD-WNLGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 9999999 599999999999999999999999999998653 368999999999998 58999999999999
Q ss_pred EEecChhhHHhh
Q 024738 238 VMQADGVSILNF 249 (263)
Q Consensus 238 ~~~g~~~~~~~~ 249 (263)
++.|+++++.+.
T Consensus 234 ~~~g~~~~~~~~ 245 (272)
T PRK13547 234 VAHGAPADVLTP 245 (272)
T ss_pred EEecCHHHHcCH
Confidence 999999887653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-50 Score=383.20 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR---------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~---------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 4 ~~l~~~nl~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 4 YLLEMKNITKTFGGV-----KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred ceEEEeeeEEEeCCe-----EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 479999999999753 599999999999999999999999999999999999986 899999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC--C-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL--N-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|+||++..+.. .|+.+|+.++.... . ...++..+++.++++.+++.+..++++.+||||||||++||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 79 TERAGIAIIHQELALVKE-LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HHHCCeEEEEeccccCCC-CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 38999999754332 39999998764322 1 2334445678899999999988999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|+.+|++|||||||++||+.++..+.+.|.++++ .|.|||++|||++++ .+||++++|++|+++..|+++++.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKA--HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999999999864 367999999999998 579999999999999999887764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=352.03 Aligned_cols=216 Identities=34% Similarity=0.457 Sum_probs=182.2
Q ss_pred eEEEEeEEEEECCC----ccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------
Q 024738 33 AIECSNLNYSITKK----QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~----~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------- 99 (263)
+|+++||+++|++. .....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 69999999999730 00013699999999999999999999999999999999999999999998854
Q ss_pred -------ceEEEecCCCCcc-cccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHH
Q 024738 100 -------PKSFVFQNPDHQV-VMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 -------~~~~v~q~~~~~~-~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 169 (263)
.++|++|++...+ ...++.+|+.+.... ......+....+.++++.+++. ...++++.+||+||+||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 3799999874222 224899988654321 1233344455788999999997 57899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||+.+|++|||||||+|||+.++..+.+.|++++++ .+.|+|++||+++++. .||++++|++|++++.|+++++++
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ-FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH-cCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 99999999999999999999999999999999998653 3679999999999985 799999999999999999988765
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 242 ~ 242 (268)
T PRK10419 242 F 242 (268)
T ss_pred C
Confidence 3
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=348.49 Aligned_cols=189 Identities=28% Similarity=0.425 Sum_probs=163.2
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ceEEEecC-CCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PKSFVFQN-PDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~~~v~q~-~~~~~~~~tv 117 (263)
.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|+ +.. +...|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~-~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL-WWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcccc-CCCCcH
Confidence 3699999999999999999999999999999999999999999999854 37898844 332 223489
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 024738 118 EADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197 (263)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l 197 (263)
.+|+.+.....+...++..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 99987754333344445556778899999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
.+.|++++++ .+.|||++||+++++ ..||++++|++|++++.|
T Consensus 193 ~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 193 RNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999998653 357999999999997 579999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=346.80 Aligned_cols=208 Identities=26% Similarity=0.425 Sum_probs=178.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--P---TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p---~~G~I~~~~-------- 99 (263)
.|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|++++
T Consensus 4 ~l~~~nl~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFGKN-----HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeCCe-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 69999999999753 59999999999999999999999999999999999986 4 689998854
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ ...|+.+|+.++....+ ....+..+++.++++.+++. +.+++.+.+||||||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl 157 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPF-PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL 157 (252)
T ss_pred ChHHhhccEEEEecCCCCC-CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH
Confidence 278999997633 22499999987543222 22334456678889999985 356788999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|+++++
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE---KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999853 36999999999997 68999999999999999999988
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
...
T Consensus 235 ~~~ 237 (252)
T PRK14256 235 FTT 237 (252)
T ss_pred HhC
Confidence 754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=347.50 Aligned_cols=207 Identities=29% Similarity=0.417 Sum_probs=179.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---PTNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~~---------- 99 (263)
+++++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 2 ~~~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYGKK-----QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEECCE-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 68999999999753 59999999999999999999999999999999999974 6999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|+||++..+ ..|+.+|+.++....+. ......+++.++++.+++. ...++++.+||||||||++||
T Consensus 77 ~~~~i~~~~q~~~l~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 77 LRKNVGMVFQQPNVF--VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HhhhEEEEecCCccc--cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 379999998643 24999999875332222 1233455678899999995 456888999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||+.+|++|||||||+|||+.++..+.+.|+++.. +.|||++||+++++ ..||++++|++|++++.|++.+++..
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999742 57999999999997 58999999999999999999988754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=351.97 Aligned_cols=208 Identities=27% Similarity=0.429 Sum_probs=178.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
..+|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 11 ~~~l~i~nl~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 11 NIIISLQNVTISYGTF-----EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred CceEEEEeEEEEECCE-----EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 4589999999999753 59999999999999999999999999999999999987 6999998854
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC----CcccCCCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM----SNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqR 166 (263)
.++|+||++..+. .|+.+|+.++....+.. .+..+++.++++.+++ .+..++++.+||+|||||
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred cCCHHHHhhceEEEccCCccch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 3799999985432 39999998764332222 2334556778888876 346788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC-----------
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED----------- 234 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~----------- 234 (263)
++|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++ .+||++++|++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999999999842 47999999999998 58999999996
Q ss_pred CEEEEecChhhHHhh
Q 024738 235 GKIVMQADGVSILNF 249 (263)
Q Consensus 235 G~i~~~g~~~~~~~~ 249 (263)
|++++.|++.++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=382.71 Aligned_cols=209 Identities=27% Similarity=0.361 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 4 PYISMAGIGKSFGPV-----HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred ceEEEeeeEEEcCCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccC----CCC---ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGN----LNL---THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~----~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++..+.. .|+.+|+.++... .+. ...+..+++.++++.+|+.+..++++.+|||||||||+||
T Consensus 79 ~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 79 QLGIGIIYQELSVIDE-LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred HCCeEEEeecccccCC-CcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 38999998754333 3899999875321 111 2234456788999999999889999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||++++ .+||++++|++|++++.|+++++..
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9999999999999999999999999999999998643 68999999999998 5899999999999999999877643
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=347.37 Aligned_cols=208 Identities=28% Similarity=0.408 Sum_probs=179.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYGEK-----QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEECCe-----eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 589999999999753 599999999999999999999999999999999999875 799999853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.++....+. ...+..+++.++++.+++. +..++++.+||+|||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPF-P-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred ccHHHHHhheEEEecCCCcC-C-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 279999998643 2 4999999875433222 2334455677889999874 45788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK---EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999853 36999999999997 5799999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=341.50 Aligned_cols=195 Identities=32% Similarity=0.482 Sum_probs=168.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
+++ ||+|+|+++ .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~~~-~l~~~~~~~-----~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 2 LCV-DIEKRLPDF-----TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred cee-eeeEecCCe-----ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhh
Confidence 455 999999874 24 99999999 99999999999999999999999999999998854
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++.... .....++++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 73 ~~~~i~~~~q~~~~~~-~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 73 QQRKIGLVFQQYALFP-HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred HhhcEEEEecCCccCC-CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 3789999875432 239999998754321 2333456678899999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
|++|||||||+|||+.+++.+.+.|++++++ .|.|||++||+++++ .+||++++|++|++++.|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998653 367999999999998 589999999999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=347.12 Aligned_cols=208 Identities=28% Similarity=0.411 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CC---CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KP---TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p---~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNKK-----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred ceEEEEeeEEEECCe-----eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 479999999999753 5999999999999999999999999999999999985 46 599998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.++....+.. .....+++.++++.+++. +..++++.+||+|||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPF-P-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cchHhhhhcEEEEecCCccC-c-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 379999998643 2 49999998764322322 233456677889999874 45788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD---DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh---CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999853 36999999999987 5899999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+++.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=350.58 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=177.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.+++
T Consensus 20 ~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYGEK-----RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeCCc-----eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 489999999999753 59999999999999999999999999999999999864 7999998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ ..|+.+|+.++....... ....++.+.++++.+++. ...++++.+||||||||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPF--PKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred ccHHHHhccEEEEecCCccC--cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 379999987533 249999998764322221 223345567788888884 45688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|++|++++.|++++
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE---EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999843 36999999999987 5899999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
++..
T Consensus 250 ~~~~ 253 (268)
T PRK14248 250 IFTS 253 (268)
T ss_pred HHhC
Confidence 8764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=389.03 Aligned_cols=218 Identities=26% Similarity=0.316 Sum_probs=185.6
Q ss_pred cceEEEEeEEEEECCCcc------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----
Q 024738 31 GVAIECSNLNYSITKKQR------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----- 99 (263)
.++|+++||++.|+.... ....+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 358999999999962100 013599999999999999999999999999999999999999999999854
Q ss_pred -----------ceEEEecCCC-CcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHH
Q 024738 100 -----------PKSFVFQNPD-HQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 -----------~~~~v~q~~~-~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq 165 (263)
.++|+||++. ......|+.+|+.+++...+. ...+..+++.++++.+||. ..+++++.+|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 3799999973 122223899998875432222 2344556788999999996 6789999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++|||||||++||+.++.+++++|++++++ .|.|||+||||++++ .+||+|++|++|++++.|+++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~-~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~ 549 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD-FGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 549 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999998654 368999999999998 579999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
+++..
T Consensus 550 ~i~~~ 554 (623)
T PRK10261 550 AVFEN 554 (623)
T ss_pred HHhcC
Confidence 98764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=375.77 Aligned_cols=219 Identities=32% Similarity=0.432 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC----ceEEEEcC--------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT----NGHVYVKR-------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~----~G~I~~~~-------- 99 (263)
++|+++||++.|... .....+++||||++.+||++||+|+|||||||+.++|.|++++. +|+|.+++
T Consensus 4 ~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 389999999999764 22346999999999999999999999999999999999999887 89998864
Q ss_pred ---------ceEEEecCCCCcccc-cCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccC--CCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVM-PTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQ--RPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkqR 166 (263)
.++|+||+|...+.. .++.+.+.-.+..+ ....++.++++.++|+.+||.+... ++|++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 489999998544332 27777665543332 2447788889999999999986544 5999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|.||+||+.+|++||+||||++||+..+.+++++|+++.++ .|+++|+||||+..+ ++||||+||++|++++.|++++
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999865 589999999999997 5799999999999999999999
Q ss_pred HHhhhhh
Q 024738 246 ILNFIKS 252 (263)
Q Consensus 246 ~~~~~~~ 252 (263)
++++..+
T Consensus 242 i~~~p~h 248 (539)
T COG1123 242 ILSNPQH 248 (539)
T ss_pred HHhccCC
Confidence 9986443
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=348.41 Aligned_cols=218 Identities=20% Similarity=0.308 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEECCCc---------------cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 32 VAIECSNLNYSITKKQ---------------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~---------------~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
..++++||++.|.... ...+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3689999999886521 1235699999999999999999999999999999999999999999999
Q ss_pred EcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 97 VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 97 ~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
+++.+++++|.+..... .|+.+|+.++....+...++..+.+.++++.+++.+..++++.+||+||+||++||||++.+
T Consensus 83 ~~g~~~~~~~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~ 161 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQ-LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVN 161 (264)
T ss_pred ECCEEeEEecccCCCCC-CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 99988888887643222 38999987653333344445555667888999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKS 252 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
|++|||||||+|||+.++..+++.|.++.+ .|.|||++||+++++ +.||++++|++|+++..|+.+++.+....
T Consensus 162 p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~--~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 236 (264)
T PRK13546 162 PDILVIDEALSVGDQTFAQKCLDKIYEFKE--QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEA 236 (264)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHH
Confidence 999999999999999999999999999854 367999999999998 57999999999999999999888765433
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=346.47 Aligned_cols=208 Identities=27% Similarity=0.445 Sum_probs=178.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC---CCC--CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL---LKP--TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl---~~p--~~G~I~~~~------- 99 (263)
++|+++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ .+| ++|+|.+++
T Consensus 2 ~~l~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 2 VKIDARDVNFWYGDF-----HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred cEEEEEEEEEEECCE-----eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 489999999999753 599999999999999999999999999999999997 455 589998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqR 166 (263)
.++|+||++..+ . .|+.+|+.++....+.. .+...+.+.++++.+++.+ .+++++.+||||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~-~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPF-P-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred ccHHHHhhheEEEecCCccC-c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 379999997543 2 49999998764332222 2334566788999999853 5688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++. + ++|||++||+++++ +.||++++|++|++++.|++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K--DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999984 2 47999999999997 6899999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=389.90 Aligned_cols=216 Identities=29% Similarity=0.391 Sum_probs=185.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+++|+... ...++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 10 ~~~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CceEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 34899999999996421 113699999999999999999999999999999999999999999998632
Q ss_pred ----------------ceEEEecCCCCcc-cccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCC---cccCCCCCC
Q 024738 100 ----------------PKSFVFQNPDHQV-VMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS---NYLQRPVQT 158 (263)
Q Consensus 100 ----------------~~~~v~q~~~~~~-~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~ 158 (263)
.++|++|++...+ ...|+.+|+.+++.. .+....+.++++.++++.+||. ..+++++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 3799999873212 223999999886542 2344556667888999999996 357899999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++ .|+|||+||||++++ .+||+|++|++|++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~-~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE-MSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 9999999999999999999999999999999999999999999998653 368999999999997 58999999999999
Q ss_pred EEecChhhHHh
Q 024738 238 VMQADGVSILN 248 (263)
Q Consensus 238 ~~~g~~~~~~~ 248 (263)
++.|++++++.
T Consensus 248 ~~~g~~~~~~~ 258 (623)
T PRK10261 248 VETGSVEQIFH 258 (623)
T ss_pred cccCCHHHhhc
Confidence 99999988864
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=343.84 Aligned_cols=203 Identities=32% Similarity=0.495 Sum_probs=172.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||++.|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 5 ~~~i~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA-----KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred CceEEEeccEEeeCCc-----eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 3489999999999753 599999999999999999999999999999999999999999999875
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+ . .|+.+|+.+........ ...+++.++++.+++. ...++++.+||+||+||++|||||+.+
T Consensus 80 ~~~i~~~~q~~~l~-~-~tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 80 RQQVSYCAQTPTLF-G-DTVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred HhccEEEecccccc-c-ccHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 379999997533 2 39999998753222211 1234567899999996 578999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe-CCEEEEecCh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME-DGKIVMQADG 243 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~-~G~i~~~g~~ 243 (263)
|++|||||||+|||+.++..+.+.|.++.++ .|.|||++||+.++++.||++++|+ ++..+++|..
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVRE-QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhh
Confidence 9999999999999999999999999998653 3679999999999987899999995 5555566643
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-49 Score=345.46 Aligned_cols=208 Identities=29% Similarity=0.425 Sum_probs=178.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 3 NIISAKDVHLSYGNY-----EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred ceEEEEeeEEEECCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 379999999999753 59999999999999999999999999999999999997 4899998854
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ ..|+.+|+.++....+.. .+...+++.++++.+++. ..+++++.+|||||+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPF--PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred chHHHhhccEEEEecCCccC--CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 278999997543 249999998764332222 223345677889999984 45688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||++||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|+++..+++++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999842 47999999999997 5799999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=346.50 Aligned_cols=208 Identities=28% Similarity=0.375 Sum_probs=178.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEEcC---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNGHVYVKR--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p----~~G~I~~~~--------- 99 (263)
+|+++||+++| ++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|++++
T Consensus 4 ~l~~~~l~~~~-~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-AQ-----PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-cc-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 79999999999 32 599999999999999999999999999999999999999 999999854
Q ss_pred --ceEEEecCCCCccc-ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHHHHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVV-MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 100 --~~~~v~q~~~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqRv~lAral 173 (263)
.++|++|++...+. ..++.+++.+.....+... ..+++.++++.+++.+ .+++++.+|||||+||++|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 48999999742222 2377777655332222222 2356788999999986 57899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||+|||+.++..+.+.|++++++ .|.|||++||+++++ ++||++++|++|++++.++++++.+.
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999999998653 368999999999998 58999999999999999999888654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=381.42 Aligned_cols=210 Identities=27% Similarity=0.397 Sum_probs=182.0
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEc-------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVK------------- 98 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~------------- 98 (263)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~ 75 (520)
T TIGR03269 1 IEVKNLTKKFDGK-----EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75 (520)
T ss_pred CEEEEEEEEECCe-----EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccc
Confidence 5789999999753 5999999999999999999999999999999999997 7999999885
Q ss_pred ---------------------------------CceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 99 ---------------------------------RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 99 ---------------------------------~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
..++|+||++...+...|+.+|+.++....+....+.++++.++++.
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEM 155 (520)
T ss_pred cccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 12799999732222223899999876543344445556778899999
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-h
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E 224 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~ 224 (263)
+||++..++++.+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++ .|.|||+||||++.+ .
T Consensus 156 ~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tviivtHd~~~~~~ 234 (520)
T TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA-SGISMVLTSHWPEVIED 234 (520)
T ss_pred cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHH
Confidence 99998889999999999999999999999999999999999999999999999999998653 368999999999998 5
Q ss_pred cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 225 YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 225 ~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+||++++|++|+++..|+++++...
T Consensus 235 ~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 235 LSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred hcCEEEEEeCCEEeeecCHHHHHHH
Confidence 8999999999999999988877653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=348.16 Aligned_cols=209 Identities=24% Similarity=0.386 Sum_probs=180.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 18 ~~~l~~~nl~~~~~~~-----~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 18 EIALSTKDLHVYYGKK-----EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CeEEEEeeEEEEECCe-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 3489999999999653 69999999999999999999999999999999999986 5899998754
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|+||++..+ . .|+.+|+.++....+. ...+..+++.++++.+++. ..+++++.+|||||+|
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~-~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPF-A-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQ 170 (267)
T ss_pred cCChHHHhcceEEEecCCccc-c-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHH
Confidence 379999987543 2 4999999876432222 2334456678889999984 4578899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++ ++||++++|++|++++.|+++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K--NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c--CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999984 2 47999999999997 689999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 88753
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-49 Score=344.36 Aligned_cols=209 Identities=26% Similarity=0.427 Sum_probs=177.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----ceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-----NGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~~------- 99 (263)
.+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 3 LLLSAQDVNIYYGDK-----QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEEeeeEEEECCE-----EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 379999999999753 5999999999999999999999999999999999999874 89998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. ..|+.+|+.++....+. ..++..+.+.++++.+++. +.+++++.+|||||+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFP-TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred cCHHHhhceeEEEeccCccCc-CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 3789999975332 23999999875432222 2233445566777777653 45688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++. .||++++|++|++++.|++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K--VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 2 479999999999985 799999999999999999999
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
++..
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 8764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=342.64 Aligned_cols=206 Identities=26% Similarity=0.411 Sum_probs=173.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
++++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 i~~~~l~~~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (237)
T cd03252 1 ITFEHVRFRYKPDG---PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77 (237)
T ss_pred CEEEEEEEecCCCC---ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhc
Confidence 47899999996421 3599999999999999999999999999999999999999999999965 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++|++|++.. +..|+.+|+.++.. ........+ .+.++++.+ +++..+++++.+|||||||||+|||||
T Consensus 78 i~~~~q~~~~--~~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 78 VGVVLQENVL--FNRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred EEEEcCCchh--ccchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 7999999753 23499999987532 112222111 123445555 566667889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||++||+.++..+.+.|++++ + |.|||++||+++++..||++++|++|++++.|+++++++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDIC-A--GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999984 2 5799999999999877999999999999999999888765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=346.86 Aligned_cols=203 Identities=27% Similarity=0.407 Sum_probs=175.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
++|+++||+++|+++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.
T Consensus 3 ~~l~~~~l~~~~~~~-----~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~ 77 (251)
T PRK09544 3 SLVSLENVSVSFGQR-----RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY 77 (251)
T ss_pred cEEEEeceEEEECCc-----eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccc
Confidence 379999999999753 599999999999999999999999999999999999999999999976 5899999975
Q ss_pred Ccccc-cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 024738 110 HQVVM-PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188 (263)
Q Consensus 110 ~~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~ 188 (263)
.+..+ .++.+++.+. .+.. .+++.++++.+++.+..++++.+|||||+||++|||||+.+|++|||||||+|
T Consensus 78 ~~~~l~~~~~~~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 150 (251)
T PRK09544 78 LDTTLPLTVNRFLRLR---PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150 (251)
T ss_pred cccccChhHHHHHhcc---cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 43332 2667765432 1111 24567889999999989999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 189 LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||+.++..+++.|++++++ .+.|||++||+++++ +.||++++|++ +++..|+++++.+
T Consensus 151 LD~~~~~~l~~~L~~~~~~-~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRE-LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 9999999999999998653 267999999999997 58999999965 7999999888764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-49 Score=344.05 Aligned_cols=207 Identities=29% Similarity=0.457 Sum_probs=178.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++||++.|+++ ++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYGDF-----QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEECCc-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 58999999999753 599999999999999999999999999999999999763 699999864
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++..+. .|+.+|+.++....+. ..++.++++.++++.+++. +..++++.+|||||+||+
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred chHHHhccEEEEecCCccCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 3799999875432 4999999876433332 2334456778888998874 456889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++.+ +.||++++|++|++++.++++++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K--DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 2 47999999999987 57999999999999999999888
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
...
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=344.04 Aligned_cols=201 Identities=29% Similarity=0.381 Sum_probs=171.5
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCccc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~ 113 (263)
+.++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++++..+..+....+..
T Consensus 23 l~~~~~~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 97 (224)
T cd03220 23 LGILGRKGEVGEF-----WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97 (224)
T ss_pred hhhhhhhhhcCCe-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCC
Confidence 7889999999864 69999999999999999999999999999999999999999999998865433332111122
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~ 193 (263)
..|+.+|+.++....+....+.++++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 23999999876433333344445667889999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 194 QFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 194 ~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
+..+.+.|.+++++ +.|||++||+++++ .+||++++|++|++++.|
T Consensus 178 ~~~~~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 178 QEKCQRRLRELLKQ--GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999998643 57999999999997 579999999999998754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=348.01 Aligned_cols=209 Identities=28% Similarity=0.412 Sum_probs=180.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------ 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 19 ~~~l~i~nl~~~~~~~-----~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 19 APAMAAVNLTLGFAGK-----TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred CcEEEEeeEEEEECCE-----EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 4589999999999753 599999999999999999999999999999999999985 799999854
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. .|+.+|+.++..... ....+..+.+.++++.+++.. .+++.+.+|||||+||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred chhHHHhhheEEeccCCccCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHH
Confidence 3789999986432 499999987542221 233444556678899999863 4678899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|++++
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD---RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999853 26999999999997 5899999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=337.16 Aligned_cols=189 Identities=32% Similarity=0.462 Sum_probs=164.8
Q ss_pred EEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------------
Q 024738 36 CSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------------- 99 (263)
Q Consensus 36 ~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------------- 99 (263)
++|+++.|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 i~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 75 (206)
T TIGR03608 1 LKNISKKFGDK-----IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRR 75 (206)
T ss_pred CcceEEEECCE-----EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHH
Confidence 47999999753 599999999999999999999999999999999999999999998853
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+. ..|+.+|+.+.....+....+..+++.++++.+++++..++++.+||+||+||++|||||+.+|+
T Consensus 76 ~~i~~~~q~~~~~~-~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 76 EKLGYLFQNFALIE-NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred hCeeEEecchhhcc-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3789999875332 23999999875433333344556678899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
+|||||||+|||+.+++.+.+.|+++.++ +.|+|++||+++.+..||++++|
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELNDE--GKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999998643 67999999999987789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=343.41 Aligned_cols=207 Identities=29% Similarity=0.429 Sum_probs=178.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYGEK-----KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeCCc-----eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 79999999999753 599999999999999999999999999999999999874 899998853
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++..+ . .|+.+|+.++....+. .....++.+.++++.+++.. ..++++.+|||||+||+
T Consensus 78 ~~~~~~~~i~~~~q~~~~~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPF-P-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hHHHhhhhEEEEecCCccC-c-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 379999998643 2 4999999875432222 22334556778899999853 47889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++.+ ++||++++|++|+++..|+++++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999853 47999999999987 58999999999999999999888
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 653
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-49 Score=339.27 Aligned_cols=201 Identities=35% Similarity=0.462 Sum_probs=173.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|+++.|+++. +...+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 78999999997421 113699999999999999999999999999999999999999999999853
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCC-CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNL-NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.++|++|++..+. ..|+.+|+.++.... ....++..+.+.++++.+|+.+..++++.+||+|||||++|||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~-~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 81 RRNIGYIFQAHNLLG-FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred HhheEEEcCChhhcC-CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 3799999986433 249999998764322 133445556788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
|++|||||||+|||+.++..+.+.|+++.++ .+.|||++||+++..++||++++|++|++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQKLARE-QGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999998643 36899999999987778999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=350.15 Aligned_cols=210 Identities=24% Similarity=0.397 Sum_probs=179.5
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-----
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR----- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~----- 99 (263)
..++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 36 ~~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF-----EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 34589999999999753 59999999999999999999999999999999999864 4999998853
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqk 164 (263)
.++|++|++..+ . .|+.+|+.++....+.. ....++++.++++.+++. +.+++++.+||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPF-P-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred cccchHHhhhcEEEECCCCCCC-c-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 378999998543 2 39999998764322222 233345677888888873 567889999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.. +.|||++||+++++ ++||++++|++|+++..|++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999853 37999999999997 58999999999999999999
Q ss_pred hhHHhh
Q 024738 244 VSILNF 249 (263)
Q Consensus 244 ~~~~~~ 249 (263)
.++.+.
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-49 Score=377.97 Aligned_cols=215 Identities=29% Similarity=0.422 Sum_probs=182.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc-C----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-R---------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~-~---------- 99 (263)
.++|+++||+++|++...+..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ +
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 35899999999995310011359999999999999999999999999999999999999999999984 2
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----ccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----YLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~LSgGqkq 165 (263)
.++|+||++..+. ..|+.+|+.++... ....++.++++.++++.+++.. .+++++.+|||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~-~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYP-HRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCC-CCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence 2799999875433 23999999865322 2223334467788999999974 578999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++|||||||+|||+.+++.+++.|++++++ .|.|||++|||++++ ++||++++|++|++++.|++.
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE-MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998653 368999999999998 589999999999999999988
Q ss_pred hHHh
Q 024738 245 SILN 248 (263)
Q Consensus 245 ~~~~ 248 (263)
++.+
T Consensus 514 ~~~~ 517 (520)
T TIGR03269 514 EIVE 517 (520)
T ss_pred HHHh
Confidence 7754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=329.92 Aligned_cols=207 Identities=32% Similarity=0.464 Sum_probs=190.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--------eEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--------KSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--------~~~v 104 (263)
++.+++++.+|.++. ..+|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++++ -|.|
T Consensus 3 ~l~~~~~sl~y~g~~---~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvV 79 (259)
T COG4525 3 MLNVSHLSLSYEGKP---RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79 (259)
T ss_pred eeehhheEEecCCcc---hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeE
Confidence 688999999998752 46999999999999999999999999999999999999999999999863 6899
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
||++.+.++. ++.+|+.|++...++.+.+..+.+.+.+..+||.+..++++-+|||||||||.|||||+.+|++|+|||
T Consensus 80 FQ~~~LlPWl-~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE 158 (259)
T COG4525 80 FQNEALLPWL-NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE 158 (259)
T ss_pred eccCccchhh-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence 9999887777 999999999988899888888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEe--CCEEEEecChh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYME--DGKIVMQADGV 244 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~--~G~i~~~g~~~ 244 (263)
|+++||.-+++.+.++|-+++++ .|+.+++||||++++- .++++++|. .|+|++.-++.
T Consensus 159 PfgAlDa~tRe~mQelLldlw~~-tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 159 PFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999998775 4789999999999975 699999997 58898776653
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=348.15 Aligned_cols=209 Identities=27% Similarity=0.431 Sum_probs=177.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
.++|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+++
T Consensus 22 ~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 22 KVVFDTQNLNLWYGED-----HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred ceEEEEeeeEEEECCc-----ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 3489999999999753 59999999999999999999999999999999999987 6999998854
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcC----CCcccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVG----MSNYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~----l~~~~~~~~~~LSgGqkq 165 (263)
.++|+||++..+ ..|+.+|+.++....... .....+.+.++++.++ +.+.+++++.+|||||||
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPF--PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred cccHHHHhhhEEEEecCCccc--cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 379999997533 249999998764322222 2223445667777774 445678899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK---DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc---CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999853 47999999999997 579999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=342.78 Aligned_cols=208 Identities=29% Similarity=0.435 Sum_probs=178.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----ceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-----NGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~-----~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 3 PKIKIRGVNFFYHKH-----QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred ceEEEEEEEEEECCe-----eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 479999999999753 5999999999999999999999999999999999999997 69998743
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.++....+.. .++..+.+.++++.+++. +..++++.+||||||||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPF-P-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred cChHHhhceEEEEecCCccC-c-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 389999998643 2 39999998764322222 223345667778888864 45789999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++ ..||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q--NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999999883 2 57999999999997 5799999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8654
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=340.01 Aligned_cols=206 Identities=32% Similarity=0.482 Sum_probs=174.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|+++. .++++|+||++++|++++|+||||||||||+|+|+|+++|++|+|++++ .
T Consensus 1 i~~~~l~~~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (234)
T cd03251 1 VEFKNVTFRYPGDG---PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ 77 (234)
T ss_pred CEEEEEEEEeCCCC---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 47899999997531 2589999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++|++|++..+ ..|+.+|+.++.... ...+..+ .+.++++.+ ++....++++.+||+|||||++|||||
T Consensus 78 i~~~~q~~~~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 78 IGLVSQDVFLF--NDTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred EEEeCCCCeec--cccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 79999997543 249999998754321 2222211 234556666 677778889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++..||++++|++|++++.++++++.+.
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLM-K--NRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 99999999999999999999999999999984 2 5799999999999867999999999999999998888654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=342.79 Aligned_cols=207 Identities=28% Similarity=0.423 Sum_probs=176.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~-------- 99 (263)
.-+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 5 ~~~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWYGSK-----QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEECCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 45789999999753 59999999999999999999999999999999999986 4799999854
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqR 166 (263)
.++|+||++..+ ..|+.+|+.++....+. ...+.++.+.++++.+++.+ .+++++.+||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~--~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPF--PKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred chHHHhhhEEEEecCcccc--cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 378999997533 23899999875322222 22334456778899999964 4678899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++ +.||++++|++|++++.|++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K--NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999984 2 57999999999997 5799999999999999999998
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+++.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=348.21 Aligned_cols=208 Identities=28% Similarity=0.455 Sum_probs=178.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 37 ~~~l~i~~l~~~~~~~-----~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 37 ETVIEARDLNVFYGDE-----QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CceEEEEEEEEEECCE-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 4589999999999753 59999999999999999999999999999999999987 6899998853
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .++.+|+.+.....+... +..+++.++++.+++. +.+++++.+||||||||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~-~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNPF-P-KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred ccchHhhhccEEEEecCCccC-c-CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 378999997533 2 399999987643322222 3456688899999985 46788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEE-EEeCCEEEEecChh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAF-YMEDGKIVMQADGV 244 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~-~l~~G~i~~~g~~~ 244 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++ .+||+++ +|++|++++.|+++
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~---~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE---EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999999999999999999999999999999999999864 26999999999997 5799975 67999999999998
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++...
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 87653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=342.37 Aligned_cols=208 Identities=27% Similarity=0.407 Sum_probs=177.0
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--P---TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p---~~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKF-----EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCe-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 479999999999753 59999999999999999999999999999999999975 5 589998854
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. .|+.+|+.++....+.. .+...+.+.++++.+++. +..++++.+||+|||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 3789999976433 49999998764322222 222344566778888763 45788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD---QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999853 36999999999998 5799999999999999999988
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
++..
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 8764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=378.20 Aligned_cols=239 Identities=29% Similarity=0.472 Sum_probs=196.2
Q ss_pred eeeecccCCCccCCCCCCCCCCCCCCCCCcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHH
Q 024738 2 RLVRSFTVTPHLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLL 81 (263)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLl 81 (263)
|||+.++-.|.++..+ ...|.. -.-.|+++||+|.|+.+. ..++|+|+||+|+|||++|||||||+||||+.
T Consensus 440 rvFel~dr~P~i~~~G-~~~p~~-----~~G~IeF~~VsFaYP~Rp--~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia 511 (716)
T KOG0058|consen 440 RVFELMDRKPRIPLTG-TLAPDH-----LQGVIEFEDVSFAYPTRP--DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA 511 (716)
T ss_pred HHHHHhccCCCCCCCC-cccccc-----ccceEEEEEeeeecCCCC--CchhhcCceeeeCCCCEEEEECCCCCCHHHHH
Confidence 5676666666665432 111111 123699999999998753 46899999999999999999999999999999
Q ss_pred HHHhCCCCCCceEEEEcC-------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH-----H
Q 024738 82 KVLAGLLKPTNGHVYVKR-------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA-----L 143 (263)
Q Consensus 82 k~i~Gl~~p~~G~I~~~~-------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~-----l 143 (263)
++|..++.|++|+|.++| +||+|.|+|.+ |..|++|||.|+.. +.+.+++.+.++.+ +
T Consensus 512 sLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL--Fs~sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI 587 (716)
T KOG0058|consen 512 SLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL--FSGSIRENIAYGLD--NATDEEIEAAAKMANAHEFI 587 (716)
T ss_pred HHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee--ecccHHHHHhcCCC--CCCHHHHHHHHHHhChHHHH
Confidence 999999999999999976 58999999963 55699999999876 44555554443332 2
Q ss_pred HHc--CCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc
Q 024738 144 DAV--GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221 (263)
Q Consensus 144 ~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~ 221 (263)
..+ |.+.....+..+||||||||+||||||+++|.+|||||.||+||.++...+.+.|.+..+ ++|||++.|++.
T Consensus 588 ~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRLS 664 (716)
T KOG0058|consen 588 TNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRLS 664 (716)
T ss_pred HhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhhh
Confidence 222 444556677889999999999999999999999999999999999999999999998754 479999999999
Q ss_pred hhhcCCEEEEEeCCEEEEecChhhHHhhhhhhhh
Q 024738 222 ELEYADGAFYMEDGKIVMQADGVSILNFIKSRQS 255 (263)
Q Consensus 222 ~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 255 (263)
.++.||+|+++++|++++.|+.+|+++...+.+.
T Consensus 665 TV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~ 698 (716)
T KOG0058|consen 665 TVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYA 698 (716)
T ss_pred HhhhccEEEEEcCCeEEecccHHHHhhCcccHHH
Confidence 9999999999999999999999999987544443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=342.14 Aligned_cols=219 Identities=28% Similarity=0.430 Sum_probs=182.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK--P---TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p---~~G~I~~~~------ 99 (263)
.++|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+.+ | ++|+|.+++
T Consensus 4 ~~~i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 4 EIILSTKNLNLWYGEK-----HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred cceEEEeeeEEEECCe-----eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 3489999999999753 59999999999999999999999999999999999975 3 489998853
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+. .|+.+|+.++....+. ...+.++.+.++++.+++. ...++++.+||+||||
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred ccchhhhhceEEEEecCCccCc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 3789999986432 4999999876433222 2233445677888888874 3568899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|++|+++..|+++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~---~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK---EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh---CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence 99999999999999999999999999999999999999853 36999999999998 589999999999999999999
Q ss_pred hHHhhhh-hhhhhhhh
Q 024738 245 SILNFIK-SRQSSYIE 259 (263)
Q Consensus 245 ~~~~~~~-~~~~~~~~ 259 (263)
++..... .....|.+
T Consensus 234 ~~~~~~~~~~~~~~~~ 249 (253)
T PRK14261 234 QIFENPHEELTENYIT 249 (253)
T ss_pred HHHhCCCcHHHHHHhc
Confidence 8875422 23445554
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=343.97 Aligned_cols=211 Identities=30% Similarity=0.481 Sum_probs=180.8
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------- 99 (263)
..++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~~~i~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 7 AEDVFNISRLYLYINDK-----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhhheeeeeEEEecCCc-----eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 34689999999999864 599999999999999999999999999999999999999997665432
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|++|++..+. ..|+.+|+.++....+. ..++..+++.++++.+++. +..++.+..||+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFP-HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQ 160 (257)
T ss_pred cCCHHHHhcceEEEccCCccCC-CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHH
Confidence 3799999876332 23999999876432222 2344456788899999996 3567899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++||+++++ ..||++++|++|+++..|+++
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN---EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998843 37999999999998 689999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++.+.
T Consensus 238 ~~~~~ 242 (257)
T PRK14246 238 EIFTS 242 (257)
T ss_pred HHHhC
Confidence 88764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=341.31 Aligned_cols=191 Identities=33% Similarity=0.480 Sum_probs=166.5
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--------eEEEecCCCCcccccCHHHHHHhhc
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--------KSFVFQNPDHQVVMPTVEADVAFGL 125 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--------~~~v~q~~~~~~~~~tv~~~~~~~~ 125 (263)
|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .+|++|++..+.. .|+.+|+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~-~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPW-LTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCC-CCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999752 4899998764332 39999998753
Q ss_pred cC--CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 126 GN--LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 126 ~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
.. ......+..+++.++++.+++++..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 159 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 21 1233344456688899999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 204 LLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
++++ .|+|||++||+++++ ++||++++|++|++++.|+..++
T Consensus 160 ~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 160 IWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 8653 367999999999997 57999999999999999887655
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=343.52 Aligned_cols=210 Identities=30% Similarity=0.407 Sum_probs=179.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----ceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-----NGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-----~G~I~~~~------- 99 (263)
++|+++|++++|++. .+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+++
T Consensus 6 ~~l~~~nl~~~~~~~-----~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ-----KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred ceEEEeeEEEEeCCe-----eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 379999999999753 5999999999999999999999999999999999999985 89887743
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ . .|+.+|+.+.....+. ...+..+++.++++.+++. +..++++.+|||||+||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~-~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLF-P-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred cchHHhhccEEEEecCCccC-c-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 278999987633 2 4999999875432222 2233445677889999874 35688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC-----CEEEEe
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED-----GKIVMQ 240 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~-----G~i~~~ 240 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ .+.|||++||+++++ +.||++++|++ |++++.
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~-~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR-SELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 99999999999999999999999999999999999997643 367999999999998 58999999999 999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|+++++++.
T Consensus 238 ~~~~~~~~~ 246 (261)
T PRK14258 238 GLTKKIFNS 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=387.06 Aligned_cols=208 Identities=31% Similarity=0.510 Sum_probs=177.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..++++||+|+|+... .++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 470 g~I~~~nvsf~y~~~~---~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 470 GEIEFENVSFRYGPDD---PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred ceEEEEEEEEEeCCCC---cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 3699999999998653 3699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH-----HHHHHc--CCCcccCCCCCCCChHHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAV--GMSNYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAr 171 (263)
++|||+|++. ++..|++||+.++... .+.++..+.+. +.+..+ |++.........||||||||++|||
T Consensus 547 ~~ig~V~Q~~~--Lf~gSI~eNi~l~~p~--~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 547 RQVGYVLQDPF--LFSGSIRENIALGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred hheeEEcccch--hhcCcHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 5899999974 4566999999987433 23333332221 112221 4445556667899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+++|++||||||||+||+.+++.+.+.|.++.. |+|+|++||++..++.||||++|++|+++++|+++++++.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~---~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQILQ---GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc---CCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999999853 5799999999999999999999999999999999999876
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=341.03 Aligned_cols=207 Identities=28% Similarity=0.431 Sum_probs=177.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~-------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYGEN-----QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEECCe-----eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 69999999999753 599999999999999999999999999999999999986 599998854
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++..+. .|+.+|+.++....+.. .....+++.++++.+++. +..++++.+|||||+|||+
T Consensus 78 ~~~~~~~i~~~~q~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred hHHHHhheeEEecCCCcCc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 3789999976432 49999998754322222 233345677788888874 4567889999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ .+||++++|++|++++.|+++++.
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK---NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999853 36999999999997 579999999999999999988876
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 43
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=373.85 Aligned_cols=204 Identities=27% Similarity=0.409 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 3 ~~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 3 PYLSFDGIGKTFPGV-----KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred ceEEEeeeEEEECCE-----EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 489999999999753 599999999999999999999999999999999999999999999853
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccC--CC-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGN--LN-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+.. .|+.+|+.++... .+ ....+.++++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 78 ~~~i~~v~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 78 AAGVAIIYQELHLVPE-MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred hCCEEEEEechhccCC-CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 38999998754332 3999999875321 12 233445567889999999998889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
.+|++|||||||++||+.++..+.+.|+++++ .|.|||++|||++++ .+||++++|++|+++..++.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999864 368999999999998 57999999999999877654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=336.74 Aligned_cols=195 Identities=33% Similarity=0.529 Sum_probs=166.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|+++. .++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 2 RIEFRNVSFSYPNQE---IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred eEEEEEEEEEcCCCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 388999999996421 3599999999999999999999999999999999999999999999865
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCC-----------CCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP-----------VQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqRv~ 168 (263)
.++|++|++..+ . .|+.+|+.++... .. .+.+.++++.+++.+.+++. +.+||||||||++
T Consensus 79 ~i~~~~q~~~~~-~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~ 150 (220)
T cd03245 79 NIGYVPQDVTLF-Y-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA 150 (220)
T ss_pred hEEEeCCCCccc-c-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH
Confidence 379999998643 2 4999998765321 11 23455678888887666654 4699999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
||||++.+|++|||||||+|||+.++..+++.|+++++ + .|||++||+++++++||++++|++|++++.|
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--D-KTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--C-CEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999853 2 6999999999988889999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=344.18 Aligned_cols=208 Identities=30% Similarity=0.451 Sum_probs=178.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------- 99 (263)
++|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 24 ~~l~~~nl~~~~~~~-----~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 24 TALEVRNLNLFYGDK-----QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred cEEEEEEEEEEECCe-----eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 489999999999753 59999999999999999999999999999999999987 4899998853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. . |+.+|+.+.....+. .....++++.++++.+++. ...++++.+|||||+||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~-~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFP-K-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQR 176 (272)
T ss_pred cCHHHHhccEEEEecCCccCc-c-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHH
Confidence 3789999875432 3 999999875433322 2233345677889999885 35788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|++|++++.|++++
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS---KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999853 36999999999997 5899999999999999999988
Q ss_pred HHhh
Q 024738 246 ILNF 249 (263)
Q Consensus 246 ~~~~ 249 (263)
+...
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 8653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=344.20 Aligned_cols=207 Identities=26% Similarity=0.406 Sum_probs=176.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|++++
T Consensus 9 ~~l~i~~v~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYGSF-----LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred eEEEEeeeEEEECCE-----EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 489999999999753 59999999999999999999999999999999999986 4899998854
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++..+ . .|+.+|+.++....+.. .+..+++.++++.+++. ...++++.+|||||+||+
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~-~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPF-P-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred cChHHHhhhEEEEccCCccc-c-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 379999987533 2 39999998764322222 22335566777887774 356889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe---------CCEE
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME---------DGKI 237 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~---------~G~i 237 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++||+++++ ++||++++|+ +|++
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE---QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999999999853 36999999999997 5899999998 8999
Q ss_pred EEecChhhHHhh
Q 024738 238 VMQADGVSILNF 249 (263)
Q Consensus 238 ~~~g~~~~~~~~ 249 (263)
++.|+++++++.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=375.96 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++|++++|++.. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 4799999999996311 013699999999999999999999999999999999999986 799998743
Q ss_pred ----------ceEEEecCCCCcc-cccCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCCc---ccCCCCCCCChHHH
Q 024738 100 ----------PKSFVFQNPDHQV-VMPTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSN---YLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~-~~~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqk 164 (263)
.++|+||++...+ ...++.+++.+.... .+....+..+++.++++.+||.+ ..++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 3799999874222 223888887654321 23344455677889999999975 46899999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||++||+.++..++++|++++++ .|.|||+||||++++ .+||+|++|++|++++.|++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998653 368999999999997 58999999999999999999
Q ss_pred hhHHh
Q 024738 244 VSILN 248 (263)
Q Consensus 244 ~~~~~ 248 (263)
++++.
T Consensus 242 ~~~~~ 246 (529)
T PRK15134 242 ATLFS 246 (529)
T ss_pred HHHhh
Confidence 88764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=328.54 Aligned_cols=216 Identities=32% Similarity=0.468 Sum_probs=188.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+.+||+++..++ .+|+++||++.+||+.+|+||||||||||||.|+|-+.|++|++.+++
T Consensus 1 mi~a~nls~~~~Gr-----~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~ 75 (259)
T COG4559 1 MIRAENLSYSLAGR-----RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75 (259)
T ss_pred CeeeeeeEEEeecc-----eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHH
Confidence 58999999999775 599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCC--ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh--
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL--THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE-- 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-- 175 (263)
+.+.++|+....|.+ ||.|-+.++...++. ...+..+.+.++|...++..+..+...+|||||||||.+||+|+.
T Consensus 76 ~raVlpQ~s~laFpF-tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~ 154 (259)
T COG4559 76 HRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLW 154 (259)
T ss_pred HhhhcccCcccccce-EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHcc
Confidence 358999997765555 999999998654422 233555668889999999999999999999999999999999985
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 176 ----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 176 ----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
++++|+||||||+||+..+..++++.++++++ |..|+.|-||++.+ .|||||++|++|++++.|+|.++++.
T Consensus 155 ~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~- 231 (259)
T COG4559 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD- 231 (259)
T ss_pred CCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH-
Confidence 45699999999999999999999999999875 46899999999997 58999999999999999999999875
Q ss_pred hhhhhhh
Q 024738 251 KSRQSSY 257 (263)
Q Consensus 251 ~~~~~~~ 257 (263)
+.....|
T Consensus 232 Etl~~vy 238 (259)
T COG4559 232 ETLERVY 238 (259)
T ss_pred HHHHHHh
Confidence 3344444
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=342.12 Aligned_cols=208 Identities=29% Similarity=0.409 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
.+|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.+++
T Consensus 6 ~~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 6 PAIKVKDLSFYYNTS-----KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred ceEEEEEEEEEECCe-----EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 379999999999753 599999999999999999999999999999999999985 489999853
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCC-CChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+. .|+.+|+.++....+ ....+..+.+.++++.+++. +.+++++.+||+||+||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred cchHhhhhheEEEecccccCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 3799999986432 499999987643222 22334445677889999883 46788999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe-----CCEEEEe
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME-----DGKIVMQ 240 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~-----~G~i~~~ 240 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ +.||++++|+ +|++++.
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS---ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999999999999999853 37999999999998 5899999998 5999999
Q ss_pred cChhhHHhh
Q 024738 241 ADGVSILNF 249 (263)
Q Consensus 241 g~~~~~~~~ 249 (263)
|++.++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998653
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=339.06 Aligned_cols=207 Identities=31% Similarity=0.492 Sum_probs=171.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
++++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 l~i~~l~~~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRP--DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCCC--CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhh
Confidence 47899999997421 13599999999999999999999999999999999999999999999865 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++|++|++..+ ..|+.+|+.++.... ...+..+ .+.++++.+ ++....++++.+|||||+||++|||||
T Consensus 79 i~~~~q~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 79 IGLVSQEPVLF--DGTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EEEECCchhhh--hhhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 89999987532 249999998753321 1122111 122333444 566667888999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||+|||+.++..+.+.|+++. +|.|||++||+++++..||++++|++|++++.++.+++...
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 99999999999999999999999999999874 36899999999999888999999999999999998887653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=373.01 Aligned_cols=206 Identities=24% Similarity=0.371 Sum_probs=177.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~----------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 1 ~l~i~~l~~~~~~~-----~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 1 LLEMKGIVKTFGGV-----KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred CEEEEeEEEEeCCe-----EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 48999999999753 599999999999999999999999999999999999987 799999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCC--C--CChHHHHHHHHHHHHHcCCCccc-CCCCCCCChHHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNL--N--LTHDEVRSKVAKALDAVGMSNYL-QRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~lAr 171 (263)
.++|+||++..+.. .|+.+|+.++.... . ...++..+++.++++.+++.+.. ++++.+|||||||||+|||
T Consensus 76 ~~~~i~~v~q~~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPE-LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccccCCC-CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 38999999754332 39999998764321 1 22334456788899999998654 6789999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++ .+||++++|++|+++..++++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999999999999864 368999999999998 57999999999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=337.77 Aligned_cols=196 Identities=31% Similarity=0.388 Sum_probs=168.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEEcC-----------ceEEEecCCCCccc-ccC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNGHVYVKR-----------PKSFVFQNPDHQVV-MPT 116 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p----~~G~I~~~~-----------~~~~v~q~~~~~~~-~~t 116 (263)
+|+|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|.+++ .++|++|++...+. ..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 899999864 48999999742222 238
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC---cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 024738 117 VEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS---NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193 (263)
Q Consensus 117 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~ 193 (263)
+.+|+.+.....+....+..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 888886654322222334456788999999998 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 194 QFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 194 ~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+..+.+.|++++++ .+.|||++||+++++ .+||++++|++|++++.|++++++..
T Consensus 161 ~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 161 QARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999998653 357999999999998 58999999999999999999988753
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=335.44 Aligned_cols=197 Identities=28% Similarity=0.359 Sum_probs=166.2
Q ss_pred eEEEEeEEEEECCCcc--ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc--C---------
Q 024738 33 AIECSNLNYSITKKQR--KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--R--------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~--~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~--~--------- 99 (263)
||+++|++++|+.+.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4899999999964210 01369999999999999999999999999999999999999999999985 2
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++..+.. .|+.+|+.+.....+....+..+++.++++.+++.+ ..++++.+||+|||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPR-VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCC-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 36899999864332 389999876543233333444567788999999986 458899999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEE
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYM 232 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l 232 (263)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|+|||++||+.+++ .+||+++.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA--RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999854 368999999999988 489999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=335.13 Aligned_cols=205 Identities=30% Similarity=0.479 Sum_probs=170.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|++. ..+++|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (229)
T cd03254 2 EIEFENVNFSYDEK----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77 (229)
T ss_pred eEEEEEEEEecCCC----CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh
Confidence 48999999999742 2599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++..+ ..|+.+|+.++.... ...+..+ .+.++++.+ ++...+++++.+||||||||++||||
T Consensus 78 ~i~~~~q~~~~~--~~tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 78 MIGVVLQDTFLF--SGTIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred hEEEecCCchhh--hhHHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 379999997532 239999988753221 1111111 122334443 55556677789999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+.+|++|||||||+|||+.+++.+++.|+++. + +.|||++||+++++..||++++|++|++++.++.+++.+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLM-K--GRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999874 2 579999999999987799999999999999998877754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=373.09 Aligned_cols=201 Identities=22% Similarity=0.311 Sum_probs=174.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 3 SLQISQGTFRLSDT-----KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred eEEEEeEEEEcCCe-----eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH
Confidence 69999999999753 599999999999999999999999999999999999999999998853
Q ss_pred ceEEEecCCCCccc-------ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVV-------MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~-------~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++....+ ..++.+++.+. .+.++++.++++.+++.+..++++.+|||||||||+||||
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHH
Confidence 26899998643211 12566654321 1234567889999999988999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++++ ++||++++|++|+++..|+++++.+
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998643 68999999999998 5899999999999999999887654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=374.73 Aligned_cols=217 Identities=24% Similarity=0.375 Sum_probs=183.0
Q ss_pred cceEEEEeEEEEECCCcc------ccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----
Q 024738 31 GVAIECSNLNYSITKKQR------KLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~------~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----- 99 (263)
.++|+++|++++|++... +..++|+|+||+|++||+++|+||||||||||+|+|+|++ |++|+|++++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence 358999999999963100 0136999999999999999999999999999999999998 5899999864
Q ss_pred -----------ceEEEecCCCC-cccccCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHH
Q 024738 100 -----------PKSFVFQNPDH-QVVMPTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 -----------~~~~v~q~~~~-~~~~~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqk 164 (263)
.++|+||++.. .+...|+.+|+.++.... .....+.++++.++++.+++. ...++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 27999998731 222239999998764322 123344456788999999997 578999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ .|.|||+||||++++ .+||++++|++|++++.|++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 510 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK-HQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999998653 368999999999998 57999999999999999999
Q ss_pred hhHHhh
Q 024738 244 VSILNF 249 (263)
Q Consensus 244 ~~~~~~ 249 (263)
+++++.
T Consensus 511 ~~~~~~ 516 (529)
T PRK15134 511 ERVFAA 516 (529)
T ss_pred HHHhcC
Confidence 998764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=371.87 Aligned_cols=204 Identities=24% Similarity=0.345 Sum_probs=177.5
Q ss_pred EEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------ce
Q 024738 36 CSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------------PK 101 (263)
Q Consensus 36 ~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------------~~ 101 (263)
++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 ~~nl~~~~~~~-----~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 75 (491)
T PRK10982 1 MSNISKSFPGV-----KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75 (491)
T ss_pred CCceEEEeCCE-----EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 46899999753 599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhcc-CCC--CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLG-NLN--LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
+|++|++.... ..|+.+|+.++.. ..+ ....+..+++.++++.+++....++++.+|||||||||+|||||+.+|+
T Consensus 76 ~~v~q~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ 154 (491)
T PRK10982 76 SMVHQELNLVL-QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK 154 (491)
T ss_pred EEEeccccccc-CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 99999975333 3499999987532 111 1233445678889999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++ .+||++++|++|++++.++++++.
T Consensus 155 lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999864 368999999999998 579999999999999999887753
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=364.05 Aligned_cols=216 Identities=19% Similarity=0.335 Sum_probs=183.8
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCC
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPD 109 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~ 109 (263)
..++++++||+++|+++. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++...++.+.+.
T Consensus 18 ~~~mL~lknL~~~~~~~~--~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~ 95 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGE--YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSG 95 (549)
T ss_pred ccceeEEEEEEEecCCCc--cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccc
Confidence 345899999999997632 135999999999999999999999999999999999999999999999886555554433
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
.... .|+.+|+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 96 l~~~-lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 96 LNGQ-LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred cCCC-CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 2222 399999877433233444555566778999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
|+.++..+++.|+++++ .|.|||++|||++++ ..||++++|++|+++..|+++++....
T Consensus 175 D~~sr~~LlelL~el~~--~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 175 DQTFTKKCLDKMNEFKE--QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999999853 367999999999998 579999999999999999998877643
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=337.55 Aligned_cols=206 Identities=29% Similarity=0.394 Sum_probs=173.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcC----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKR---------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~---------- 99 (263)
++|+++||+++|+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|++++
T Consensus 6 ~~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 6 PILEIKNLHASVNEN-----EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80 (252)
T ss_pred ceEEEEeEEEEeCCE-----EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhh
Confidence 379999999999753 599999999999999999999999999999999998 589999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC----C---CChHHHHHHHHHHHHHcCCC-cccCCCCC-CCChHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL----N---LTHDEVRSKVAKALDAVGMS-NYLQRPVQ-TLSGGQKQR 166 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqR 166 (263)
.++|++|++..+.. .++.+++.+..... . ....+..+++.++++.+++. ...++++. .|||||+||
T Consensus 81 ~~~~~~~~~~q~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 81 RAHLGIFLAFQYPIEIPG-VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred hheeeEEEEecccccccc-ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 25788998754332 37888876543210 1 11223345677899999997 46788887 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecChh
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~ 244 (263)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +|.|||++||+++++. . ||++++|++|++++.|+++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT--SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999999999999864 3689999999999985 5 8999999999999999887
Q ss_pred h
Q 024738 245 S 245 (263)
Q Consensus 245 ~ 245 (263)
.
T Consensus 238 ~ 238 (252)
T CHL00131 238 L 238 (252)
T ss_pred h
Confidence 3
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-48 Score=342.65 Aligned_cols=207 Identities=26% Similarity=0.377 Sum_probs=175.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+++
T Consensus 19 ~~l~~~nl~~~~~~~-----~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYGGF-----LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred ceEEEeeEEEEeCCe-----EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 489999999999753 599999999999999999999999999999999999863 689998753
Q ss_pred --------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 --------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 --------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ . .++.+|+.++....... ....+.+.++++.+++. +.+++++.+|||||+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~-~-~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPF-P-KSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred chhHHHhhcEEEEccCCccc-c-ccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHH
Confidence 378999997533 2 39999998753222221 12334556778888763 567889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe---------CCEE
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME---------DGKI 237 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~---------~G~i 237 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++++ ++||++++|+ +|++
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE---QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999999999852 47999999999998 5899999998 8999
Q ss_pred EEecChhhHHhh
Q 024738 238 VMQADGVSILNF 249 (263)
Q Consensus 238 ~~~g~~~~~~~~ 249 (263)
++.|++++++..
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=334.27 Aligned_cols=205 Identities=25% Similarity=0.339 Sum_probs=171.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---PTNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~~---------- 99 (263)
.++++|++++|++.. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 478999999997531 12469999999999999999999999999999999999999 9999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCC---CChHHHHHHHHH-HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLN---LTHDEVRSKVAK-ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~---~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|++|++..+.. .|+.+|+.++..... .........+.+ +++.+++.+..++.+.+||+||+||++|||||+.
T Consensus 82 ~i~~~~q~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 82 CVAYVRQDDILLPG-LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred cEEEeCCCCccCcC-CcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 48999998754332 399999987532211 111222234445 8999999988899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc-chh-hcCCEEEEEeCCEEEEec
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL-EEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~-~~~-~~~d~v~~l~~G~i~~~g 241 (263)
+|++|||||||+|||+.++..+.+.|+++.++ +.|+|++||++ +++ +.||++++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~--~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998643 67999999998 465 689999999999998764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=349.21 Aligned_cols=211 Identities=27% Similarity=0.427 Sum_probs=178.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
..+|+++|++++|.+.. .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 78 ~~~i~~~nls~~y~~~~---~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRT---KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CceEEEEeeEEEecCCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 34899999999996421 369999999999999999999999999999999999986 5799998742
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHH-HHHHHHHHHHHcCCC----cccCCCCCCCChHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDE-VRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkq 165 (263)
.++|+||+|..+ ..|+++|+.++....+...++ ..+.+.++++.+++. ...++++.+|||||||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~--~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPF--EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred ccchHhhhccEEEEecCCccC--CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 489999998643 349999998764322232222 234466778888773 4568899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~ 244 (263)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+. +||+|++|++|++++.|++.
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998853 479999999999985 69999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++++.
T Consensus 310 ~l~~~ 314 (329)
T PRK14257 310 TIFIH 314 (329)
T ss_pred HHhcC
Confidence 99864
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-48 Score=334.54 Aligned_cols=205 Identities=29% Similarity=0.468 Sum_probs=170.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|+++ ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .
T Consensus 1 l~~~~l~~~~~~~----~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 1 IEFENVTFAYDPG----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred CEEEEEEEEeCCC----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 4789999999642 2599999999999999999999999999999999999999999999965 2
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++|++|++..+ ..|+.+|+.++... ....+..+ .+.+.++.+ ++....++++.+||+|||||++|||||
T Consensus 77 i~~~~q~~~~~--~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 77 IGVVPQDTVLF--NDTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred EEEECCCChhh--cchHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 79999997533 34999999875322 22222111 122333444 555566778899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+.+|++|||||||+|||+.++..+.+.|.++.+ |.|||++||+.+++..||++++|++|++++.|+.+++.+.
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSK---GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999998742 5799999999999877999999999999999998887653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=330.62 Aligned_cols=217 Identities=29% Similarity=0.403 Sum_probs=191.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
|++++||+|+|+++ .+++++|++|++|.+++|+|||||||||||.+++.|+++++|+|++++
T Consensus 1 MI~i~nv~K~y~~~-----~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk 75 (252)
T COG4604 1 MITIENVSKSYGTK-----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAK 75 (252)
T ss_pred CeeehhhhHhhCCE-----EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHH
Confidence 68999999999875 699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
+++.+-|.......+ ||++.+.||.-.+ +....+.+..+.++++.++|+++.+++..+||||||||..+|+.++.+.
T Consensus 76 ~lSILkQ~N~i~~rl-TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 76 KLSILKQENHINSRL-TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHHHHhhchhhhee-EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence 356777876533333 9999998873222 3345667788999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhhhhhhhhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIKSRQSS 256 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 256 (263)
++++||||.++||.....++++.|++++++ -|+||++|-||++++. ++|+|+-|++|+++..|++++++++ +...+.
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~e-l~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~-~~L~ei 232 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADE-LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP-EILSEI 232 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHH-hCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH-HHHHHH
Confidence 999999999999999999999999999875 4789999999999985 8999999999999999999999875 333443
Q ss_pred h
Q 024738 257 Y 257 (263)
Q Consensus 257 ~ 257 (263)
|
T Consensus 233 y 233 (252)
T COG4604 233 Y 233 (252)
T ss_pred h
Confidence 4
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=337.92 Aligned_cols=208 Identities=29% Similarity=0.397 Sum_probs=179.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------ 99 (263)
.+.+.+++++++|+++ ++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|++++
T Consensus 6 ~~~~~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 6 PIVMDCKLDKIFYGNF-----MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred CceEEEEeEEEEeCCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 3479999999999753 599999999999999999999999999999999999986 799998864
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc----ccCCCCCCCChHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN----YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ ..|+.+|+.++...... ..+..+++.++++.+++.+ ..++++.+||+||+||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~--~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF--SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred ccchHhhhhceEEEecCCccc--cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 279999998643 35999999876433222 2334567888999999853 4467889999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe--------CCEE
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME--------DGKI 237 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~--------~G~i 237 (263)
++|||||+.+|++|||||||+|||+.++.++++.|+++. + +.|+|++||+++++ ++||++++|+ +|++
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~--~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K--DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceE
Confidence 999999999999999999999999999999999999984 2 47999999999987 5899999996 8999
Q ss_pred EEecChhhHHhh
Q 024738 238 VMQADGVSILNF 249 (263)
Q Consensus 238 ~~~g~~~~~~~~ 249 (263)
++.|+++++++.
T Consensus 235 ~~~g~~~~~~~~ 246 (261)
T PRK14263 235 VEMGPTAQIFQN 246 (261)
T ss_pred EEeCCHHHHHhC
Confidence 999999998764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-48 Score=375.27 Aligned_cols=205 Identities=33% Similarity=0.491 Sum_probs=173.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||++.|.++ .++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+++
T Consensus 349 ~i~~~~vsf~~~~~----~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 349 TIEAEDLEILSPDG----KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred eEEEEeeEEeccCC----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHh
Confidence 59999999876532 36999999999999999999999999999999999999 9999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH-----HHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK-----ALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++||+|+|. .+..|++||+.++.. ..+.++..+.++. .++.+ |++.........||||||||++||||
T Consensus 424 ~i~~v~Q~~~--LF~~TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 424 HLSWVGQNPQ--LPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred heEEecCCCc--CCCcCHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 5899999985 345699999998632 2444444333221 23333 45555555677899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.++.||+|++|++|++++.|+++++++.
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~---~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 9999999999999999999999999999998742 5799999999999999999999999999999999999865
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=330.56 Aligned_cols=192 Identities=27% Similarity=0.343 Sum_probs=167.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ce
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PK 101 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~ 101 (263)
++|+++|++++|+++ ++++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 10 ~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 10 PLLAAHALAFSRNEE-----PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred ceEEEeeEEEecCCc-----eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 379999999999753 599999999999999999999999999999999999999999999975 27
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+.. .|+.+|+.+.....+. ...+.+.++++.+++.+..++++.+||+|||||++||||++.+|++||
T Consensus 85 ~~~~q~~~~~~~-~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 85 AYLGHLPGLKAD-LSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred EEeecCcccccC-CcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 899998754332 3899998775432221 123456788999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED 234 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~ 234 (263)
|||||++||+.+++.+.+.|+++.++ |.|+|++|||++++ ++||++++++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRG--GGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999998643 57999999999998 58999999864
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-48 Score=361.39 Aligned_cols=204 Identities=28% Similarity=0.424 Sum_probs=185.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
+.++++||+|+|++ +++|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++++
T Consensus 7 ~ll~~~~i~K~Fgg-----V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 7 PLLELRGISKSFGG-----VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred ceeeeecceEEcCC-----ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHH
Confidence 47999999999987 46999999999999999999999999999999999999999999999863
Q ss_pred ---eEEEecCCCCcccccCHHHHHHhhccCCC----CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 ---KSFVFQNPDHQVVMPTVEADVAFGLGNLN----LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ---~~~v~q~~~~~~~~~tv~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
|+.|+|+..+.+.+ ||.+|+.++..... ++.+...+++.++|+.+++....+.++.+||.||||.|+|||||
T Consensus 82 ~~GI~~V~QEl~L~p~L-sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 82 AAGIATVHQELSLVPNL-SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred hCCcEEEeechhccCCc-cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHH
Confidence 78999998866655 99999988754322 45677888999999999996448899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
..++++||||||||+|+....+.++++++++.+ +|.+||+|||.++++ ++||||.||+||+.+.+.+.
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999999999999999999999964 489999999999997 78999999999999998883
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-48 Score=328.27 Aligned_cols=189 Identities=24% Similarity=0.337 Sum_probs=163.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
+|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~ 75 (204)
T PRK13538 1 MLEARNLACERDER-----ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75 (204)
T ss_pred CeEEEEEEEEECCE-----EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhh
Confidence 58999999999753 599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++..... .|+.+|+.++....+. ...+++.++++.+|+.+..++++.+||||||||++|||||+.+|+++
T Consensus 76 ~~~~~~~~~~~~~-~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 76 LLYLGHQPGIKTE-LTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred eEEeCCccccCcC-CcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 7899998753322 3999999876432221 22456778999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEE
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYM 232 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l 232 (263)
||||||++||+.++..+.+.|+++.++ +.|||++||+++++. ..+|++++
T Consensus 152 llDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 152 ILDEPFTAIDKQGVARLEALLAQHAEQ--GGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998643 579999999999985 55677766
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=336.62 Aligned_cols=207 Identities=30% Similarity=0.425 Sum_probs=177.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC-------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------- 99 (263)
.+|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+++
T Consensus 15 ~~l~~~~l~~~~~~~-----~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYGGY-----QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEECCe-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 479999999999753 599999999999999999999999999999999999875 799998842
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCCCh-HHHHHHHHHHHHHcCCC----cccCCCCCCCChHHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH-DEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqk 164 (263)
.++|++|++..+ .. |+.+|+.++....+... ...++++.++++.+++. +..++++.+||+||+
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~-~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPF-PK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred cccCHHHHhccEEEEccCCcCC-cc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 378999997643 23 99999987643222222 22345677788888773 456888999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++ ++||++++|++|++++.|+.
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN---KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999853 47999999999998 58999999999999999999
Q ss_pred hhHHh
Q 024738 244 VSILN 248 (263)
Q Consensus 244 ~~~~~ 248 (263)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 88865
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=333.65 Aligned_cols=206 Identities=28% Similarity=0.346 Sum_probs=168.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~----------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||+|+|+|++ +|++|+|.+++
T Consensus 1 ~i~~~nl~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (248)
T PRK09580 1 MLSIKDLHVSVEDK-----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75 (248)
T ss_pred CeEEEEEEEEeCCe-----eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHH
Confidence 48999999999753 5999999999999999999999999999999999995 69999999864
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccC---C-C---CChHHHHHHHHHHHHHcCCC-cccCCCCC-CCChHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGN---L-N---LTHDEVRSKVAKALDAVGMS-NYLQRPVQ-TLSGGQKQRV 167 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~---~-~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv 167 (263)
.++|++|++..+... +..+++.+.... . . ....+..+.+.++++.+++. +..++++. +||||||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 76 AGEGIFMAFQYPVEIPGV-SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred hhcceEEEecCchhccch-hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 278999987533222 443433221111 0 0 11123345677889999995 56677775 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecChhh
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~~ 245 (263)
+|||||+.+|++|||||||++||+.++..+.+.|+++++ .+.|||++|||++++. . ||++++|++|+++..|+++.
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999999999854 2579999999999985 4 89999999999999998875
Q ss_pred H
Q 024738 246 I 246 (263)
Q Consensus 246 ~ 246 (263)
+
T Consensus 233 ~ 233 (248)
T PRK09580 233 V 233 (248)
T ss_pred H
Confidence 4
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=372.03 Aligned_cols=204 Identities=30% Similarity=0.477 Sum_probs=173.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|+|+++. .++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus 341 ~i~~~~vsf~y~~~~---~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPGKE---VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred eEEEEEEEEecCCCC---CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHh
Confidence 599999999997531 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|+++|+.++... ..+.++ +.++++.+++ +........+||||||||++
T Consensus 418 ~i~~v~Q~~~--lf~~Ti~~Ni~~~~~~-~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 418 QVALVSQNVH--LFNDTIANNIAYARTE-QYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred hceEEccCce--eecchHHHHHhcCCCC-CCCHHH----HHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 4799999985 3446999999886321 123333 3344444443 33344445789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~---~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999998742 479999999999999999999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 568 ~ 568 (582)
T PRK11176 568 Q 568 (582)
T ss_pred C
Confidence 5
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=370.58 Aligned_cols=213 Identities=19% Similarity=0.300 Sum_probs=179.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEcC----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-PTNGHVYVKR---------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~~---------- 99 (263)
.++|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++
T Consensus 257 ~~~l~~~~l~~~~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 257 EVILEVRNLTAWDPVNP--HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred CceEEEecCcccccccc--ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 35899999999995210 1359999999999999999999999999999999999998 5999999854
Q ss_pred ----ceEEEecCCC--CcccccCHHHHHHhhcc--CCC---CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ----PKSFVFQNPD--HQVVMPTVEADVAFGLG--NLN---LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ----~~~~v~q~~~--~~~~~~tv~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++. ..+...|+.+|+.++.. ... ....+.++++.++++.+++. +..++++.+|||||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 2799999863 12222399999876531 111 12333456788999999996 578999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.+++.++++|.+++++ |.|||++|||++++ ++||++++|++|+++..++++++
T Consensus 415 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ--GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999998653 68999999999998 58999999999999999988776
Q ss_pred H
Q 024738 247 L 247 (263)
Q Consensus 247 ~ 247 (263)
.
T Consensus 493 ~ 493 (506)
T PRK13549 493 T 493 (506)
T ss_pred C
Confidence 3
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=313.72 Aligned_cols=218 Identities=33% Similarity=0.438 Sum_probs=193.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|.++|+++.||.+ ++|.|++|+.+.||.+.++||||||||||+|.+.=+.-|.+|+..+.+
T Consensus 2 sirv~~in~~yg~~-----q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~ 76 (242)
T COG4161 2 SIQLNGINCFYGAH-----QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76 (242)
T ss_pred ceEEcccccccccc-----hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHH
Confidence 48999999999875 599999999999999999999999999999999999999999998732
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHh-hccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAF-GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.+|+|||...+.+.+ ||.+|+.- +.+..++++++...++.++++++.|.++.|+.|-.|||||+|||+||||
T Consensus 77 i~~lr~~vgmvfqqy~lwphl-tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiara 155 (242)
T COG4161 77 IRDLRRNVGMVFQQYNLWPHL-TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHHHHhhhhhhhhhccCchh-HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHH
Confidence 479999987655554 89999754 3455678888888999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhhhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIK 251 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
|+.+|++|++||||++|||+-..++.++|++++. .|+|-++|||..+.++ .|.+|++|++|+|++.|+.+-+.++..
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~--tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p~t 233 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE--TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQT 233 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh--cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCccH
Confidence 9999999999999999999999999999999964 4799999999999984 799999999999999999877665543
Q ss_pred hhhhhhh
Q 024738 252 SRQSSYI 258 (263)
Q Consensus 252 ~~~~~~~ 258 (263)
+.-..|+
T Consensus 234 e~f~~yl 240 (242)
T COG4161 234 EAFKNYL 240 (242)
T ss_pred HHHHHHh
Confidence 3333343
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=336.74 Aligned_cols=200 Identities=28% Similarity=0.414 Sum_probs=172.0
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ce
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PK 101 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~ 101 (263)
+++||++. .+|+|+||+|++|++++|+||||||||||+++|+|+++ .+|+|.+++ .+
T Consensus 2 ~~~~l~~~---------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i 71 (248)
T PRK03695 2 QLNDVAVS---------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHR 71 (248)
T ss_pred cccccchh---------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhhe
Confidence 56788774 17999999999999999999999999999999999985 599999865 27
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh------
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE------ 175 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------ 175 (263)
+|++|++...+. .|+.+|+.++... .....+..+++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 72 ~~v~q~~~~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 72 AYLSQQQTPPFA-MPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred EEecccCccCCC-ccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 899998754333 4999999875322 22233445678899999999988899999999999999999999997
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 176 -ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 176 -~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|++|||||||+|||+.++..+.++|+++.++ +.|||++||+++++ ++||++++|++|++++.|+++++.+
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ--GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 67999999999999999999999999998643 68999999999987 6899999999999999999888754
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=379.93 Aligned_cols=200 Identities=32% Similarity=0.486 Sum_probs=172.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|+|++.. .++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 451 ~I~~~nvsf~Y~~~~---~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG---PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCCC---ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 699999999996431 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|++||+.++.. .+. +++.++++..++.+. .......||||||||++
T Consensus 528 ~i~~v~Q~~~--lf~gTI~eNi~~~~~---~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 528 QLGVVLQNGR--LMSGSIFENIAGGAP---LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred ccEEEccCCc--cCcccHHHHHhcCCC---CCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 4899999985 345699999988632 333 334455666655433 33345689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|+++ ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESLERL-----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-----CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999875 259999999999999999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 674 ~ 674 (686)
T TIGR03797 674 R 674 (686)
T ss_pred C
Confidence 4
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=332.45 Aligned_cols=198 Identities=31% Similarity=0.488 Sum_probs=168.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
..+|+++|++++|+++. ..++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 9 ~~~l~~~~l~~~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP--DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CceEEEEEEEEEeCCCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34899999999997531 12599999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHH-----HHHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR-----SKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++.. +..|+.+|+.++.... ...+.. ..+.++++.+ |+...+++++.+||||||||++||
T Consensus 87 ~~~i~~~~q~~~l--~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 87 HSKVSLVGQEPVL--FARSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred HhhEEEEecccHH--HhhhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 37999999753 2349999998754321 111111 1245678888 788888999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++++..||++++|++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPE---RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC---CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999743 3799999999999877999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=371.65 Aligned_cols=204 Identities=30% Similarity=0.476 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++||+|+|+++. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 337 ~~i~~~~v~f~y~~~~---~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 337 VSLTLNNVSFTYPDQP---QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred CeEEEEEEEEECCCCC---CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 3699999999997531 3699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCC----------CCCCCChHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR----------PVQTLSGGQKQRVA 168 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|+++|+.++.. ..+ ++.+.++++.+++.++.++ ....||||||||++
T Consensus 414 ~~i~~v~Q~~~--lf~~ti~~Ni~~~~~--~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 414 QAISVVSQRVH--LFSATLRDNLLLAAP--NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred hheeEEcccch--hhcccHHHHhhcCCC--ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH
Confidence 4899999985 344599999988632 122 3456677888888766544 55789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~---~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA---QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999874 2579999999999998899999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 563 ~ 563 (574)
T PRK11160 563 Q 563 (574)
T ss_pred c
Confidence 5
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=329.27 Aligned_cols=195 Identities=26% Similarity=0.408 Sum_probs=164.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~l~~~~l~~~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 2 DIEFKNVSLRYRPNL---PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred cEEEEEEEEecCCCC---cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 378999999997421 3599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++.. +..|+.+|+.+... ... +++.++++.+++.+. .++++.+||+||+||++
T Consensus 79 ~i~~~~q~~~l--~~~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~ 149 (221)
T cd03244 79 RISIIPQDPVL--FSGTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC 149 (221)
T ss_pred hEEEECCCCcc--ccchHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH
Confidence 37999999863 23499999864321 121 234445555555443 35689999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++..||++++|++|++++.|+
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFK---DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999998742 469999999999987799999999999988775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=339.36 Aligned_cols=201 Identities=25% Similarity=0.312 Sum_probs=174.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|.+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++++
T Consensus 2 ~i~~~nls~~~~~~~---~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 2 QMTVKDLTAKYTEGG---NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred eEEEEEEEEEeCCCC---CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhh
Confidence 488999999995321 359999999999999999999999999999999999997 789999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCC-----------CChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT-----------LSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqRv~ 168 (263)
.++|+||++..+ ..|+++|+.... ... .+++.++++.+||.++.++++.. ||+|||||++
T Consensus 78 ~i~~v~q~~~lf--~~tv~~nl~~~~---~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 78 AFGVIPQKVFIF--SGTFRKNLDPYG---KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred hEEEECCCcccc--hhhHHHHhhhcc---CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 489999998643 349999985321 122 23456788899998888888876 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+.+|++|||||||++||+.++..+.+.|+++. .++|||+|||+++.+..||+|++|++|++++.|+++++.+
T Consensus 149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~---~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF---ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence 9999999999999999999999999999999999863 2589999999999887799999999999999999999887
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 226 ~ 226 (275)
T cd03289 226 E 226 (275)
T ss_pred C
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=368.26 Aligned_cols=206 Identities=19% Similarity=0.286 Sum_probs=174.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 263 ~~~l~~~~l~~~~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 263 ETVFEVRNVTSRDR-------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred CcEEEEeCccccCC-------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 35899999998763 289999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCC--CcccccCHHHHHHhhccCC--------CC-ChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHH
Q 024738 100 ---PKSFVFQNPD--HQVVMPTVEADVAFGLGNL--------NL-THDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 ---~~~~v~q~~~--~~~~~~tv~~~~~~~~~~~--------~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqk 164 (263)
.++|+||++. ..+...|+.+|+.++.... +. .....++++.++++.+++. +..++++.+||||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 415 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHH
Confidence 3799999842 1222238999987653210 11 1223345678899999997 788999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||+|||+.+++.+.++|++++++ |.|||++|||++++ .+||++++|++|+++..++.
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD--GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999998643 68999999999997 58999999999999988866
Q ss_pred hh
Q 024738 244 VS 245 (263)
Q Consensus 244 ~~ 245 (263)
.+
T Consensus 494 ~~ 495 (510)
T PRK09700 494 RD 495 (510)
T ss_pred cc
Confidence 33
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-48 Score=358.30 Aligned_cols=203 Identities=29% Similarity=0.432 Sum_probs=178.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|+|++++ .++|+|+||++++||.+||+|++|||||||+.+|+|.++|++|+|.+++
T Consensus 336 ~l~~~~vsF~y~~~~---~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 336 ALELRNVSFTYPGQQ---TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred eeeeccceeecCCCc---cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHH
Confidence 799999999998764 4799999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.++++.|.+. .|..|+++|+.++.. +.+.+ .+.++++.+||+++ ++.-...|||||+||++
T Consensus 413 ~i~vl~Qr~h--lF~~Tlr~NL~lA~~--~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 413 TISVLTQRVH--LFSGTLRDNLRLANP--DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHhhhccchH--HHHHHHHHHHhhcCC--CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 3788999875 456699999998643 23433 44556666666543 34446799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||+|+++.+++||||||.|||+.+.+++++.|.+.++ |+|+|||||++..++.||+|++|++|+++++|++.+++.
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999999999998753 579999999999999999999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
+
T Consensus 562 ~ 562 (573)
T COG4987 562 N 562 (573)
T ss_pred c
Confidence 4
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=332.73 Aligned_cols=207 Identities=28% Similarity=0.467 Sum_probs=177.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC--------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR-------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~-------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 3 ~l~~~~v~~~~~~~-----~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFDDA-----HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeCCe-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 68999999999753 59999999999999999999999999999999999864 4899998754
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCCCChHHHHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMS----NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ ..|+.+|+.++....+. ..+...+++.++++.+++. ..+++++.+||+|||||+
T Consensus 78 ~~~~~~~~i~~~~q~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPF--PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred cHHHHhhheEEEecCCccC--cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 379999997543 24999999876432222 2234456778889999884 356888999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++++ ..||++++|++|++++.|+++++
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~--~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E--DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 2 47999999999997 57999999999999999999988
Q ss_pred Hhh
Q 024738 247 LNF 249 (263)
Q Consensus 247 ~~~ 249 (263)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=378.90 Aligned_cols=203 Identities=32% Similarity=0.495 Sum_probs=174.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. .++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 463 ~I~~~~vsf~Y~~~~---~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 463 EIEFRNVSFAYPGQE---TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred eEEEEEEEEEeCCCC---ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 599999999997431 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-----------MSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|++||+.++.. ..+.++ +.++++..+ ++.........||||||||++
T Consensus 540 ~i~~v~Q~~~--lf~~TI~eNi~~~~~--~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 540 NIGYVPQDPR--LFYGTLRDNIALGAP--YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred ccEEECCChh--hhhhhHHHHHhCCCC--CCCHHH----HHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 5899999985 345699999988632 233333 334444444 344444556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~---~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA---GKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999998753 579999999999999999999999999999999999886
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 5
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=359.00 Aligned_cols=202 Identities=34% Similarity=0.523 Sum_probs=175.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++.+|+++.|+++ .++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+++
T Consensus 320 ei~~~~l~~~y~~g----~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 320 EISLENLSFRYPDG----KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred eeeecceEEecCCC----CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 46667999999874 2699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCC----------CCCCCChHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR----------PVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqRv~l 169 (263)
+++||+|+|. .+..|++||+.++-. ..++ +.+.++++..++.++.++ ....|||||+|||++
T Consensus 396 ~i~~v~Q~p~--lf~gTireNi~l~~~--~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaL 467 (559)
T COG4988 396 QISWVSQNPY--LFAGTIRENILLARP--DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLAL 467 (559)
T ss_pred HeeeeCCCCc--cccccHHHHhhccCC--cCCH----HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHH
Confidence 5899999985 455699999998632 2333 345566666666544433 345699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||+++++++|+||||++||.++.+.+.+.|.++++ ++|+|++||+++.+..||+|++|++|++++.|.++++.+.
T Consensus 468 ARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999999999999999865 3699999999999999999999999999999999999765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=369.49 Aligned_cols=206 Identities=34% Similarity=0.531 Sum_probs=178.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++|+|+++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.++|
T Consensus 328 ~I~f~~vsf~y~~~----~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 328 SIEFENVSFSYPGK----KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred eEEEEEEEEEcCCC----CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHH
Confidence 59999999999842 3699999999999999999999999999999999999999999999965
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH-----HHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA-----LDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
++++|+|++.. +..|+++|+.++... .+.++..+.++.+ ++.+ |++.........||||||||++||||
T Consensus 404 ~I~~V~Qd~~L--F~~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 404 RIGIVSQDPLL--FSGTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred hccEEccccee--ecccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 48999999853 446999999998543 4455554444332 4444 56666667778999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++++|++||||||||+||+.+...+.+.+.++.+ ++|+|+|+|++..++.||+|++|++|++++.|+++++++.
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~---~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLK---GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc---CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999997752 4699999999999988999999999999999999999886
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=324.49 Aligned_cols=185 Identities=29% Similarity=0.428 Sum_probs=161.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++||+++|+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ .+
T Consensus 1 l~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (201)
T cd03231 1 LEADELTCERDGR-----ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75 (201)
T ss_pred CEEEEEEEEeCCc-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhhe
Confidence 4789999999763 589999999999999999999999999999999999999999999864 47
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++.... ..|+.+|+.+.... . ..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~~~q~~~~~~-~~tv~e~l~~~~~~--~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 76 LYLGHAPGIKT-TLSVLENLRFWHAD--H----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred EEeccccccCC-CcCHHHHHHhhccc--c----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999875433 34999999875321 1 23567789999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEE
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYM 232 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l 232 (263)
|||||+|||+.+++.+.+.|+++.++ |.|+|++||+...+ .+|++++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCAR--GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999987543 67999999998876 689999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=324.98 Aligned_cols=196 Identities=29% Similarity=0.426 Sum_probs=157.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCccc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~ 113 (263)
|+++||+++|+++.....++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.++|++|++..+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-- 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-- 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc--
Confidence 578999999975310002599999999999999999999999999999999999999999999999999999998643
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
..|+.+|+.+.... ..+...+.. .+.+..+ +++...++++.+||+|||||++|||||+.+|+++||||||
T Consensus 79 ~~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 79 NGTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred cCcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 34999999875321 111111111 1122222 3444567788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 187 TFLDESDQFGVIEA-VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 187 s~LD~~~~~~l~~~-l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
++||+.+++.+.+. ++++.+ ++.|||++||+++.+..||++++|++|+
T Consensus 156 ~~LD~~~~~~l~~~ll~~~~~--~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 156 SAVDAHVGRHIFENCILGLLL--NNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred ccCCHHHHHHHHHHHHHHhcc--CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999884 565543 2689999999999986699999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=377.46 Aligned_cols=201 Identities=26% Similarity=0.401 Sum_probs=171.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. .++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 477 ~I~~~~vsf~y~~~~---~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 477 YVELRNITFGYSPLE---PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred eEEEEEEEEecCCCC---CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHh
Confidence 699999999997532 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-----------MSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|+++|+.++.. ..+.++ +.++++..+ ++.........||||||||++
T Consensus 554 ~i~~v~Q~~~--lf~gTi~eNi~l~~~--~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRia 625 (710)
T TIGR03796 554 SVAMVDQDIF--LFEGTVRDNLTLWDP--TIPDAD----LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLE 625 (710)
T ss_pred heeEEecCCh--hhhccHHHHhhCCCC--CCCHHH----HHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHH
Confidence 5899999985 345699999987522 233333 333444444 444444556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|++ .++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 626 LARall~~p~iliLDEptS~LD~~te~~i~~~l~~-----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 626 IARALVRNPSILILDEATSALDPETEKIIDDNLRR-----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999875 1579999999999998999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 701 ~ 701 (710)
T TIGR03796 701 V 701 (710)
T ss_pred c
Confidence 4
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-47 Score=368.65 Aligned_cols=201 Identities=29% Similarity=0.424 Sum_probs=173.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 340 ~i~~~~v~f~y~~~----~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~ 415 (592)
T PRK10790 340 RIDIDNVSFAYRDD----NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ 415 (592)
T ss_pred eEEEEEEEEEeCCC----CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHh
Confidence 59999999999742 2699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|++. .+..|+++|+.++. ..+.+ ++.++++.+|+.+ ........||||||||++
T Consensus 416 ~i~~v~Q~~~--lF~~Ti~~NI~~~~---~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 416 GVAMVQQDPV--VLADTFLANVTLGR---DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred heEEEccCCc--cccchHHHHHHhCC---CCCHH----HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 4899999985 34459999999863 23333 3445555555443 333455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~---~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE---HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998743 479999999999999999999999999999999999886
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 564 ~ 564 (592)
T PRK10790 564 A 564 (592)
T ss_pred C
Confidence 4
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=324.38 Aligned_cols=189 Identities=28% Similarity=0.373 Sum_probs=163.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKS 102 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~ 102 (263)
+|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++
T Consensus 2 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGR-----VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76 (207)
T ss_pred EEEEEeEEEEECCe-----EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcE
Confidence 79999999999753 599999999999999999999999999999999999999999999875 368
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
|++|++.... ..|+.+|+.+.....+.. .+.+.++++.+|+.+..++++.+||||||||++|||||+.+|++|||
T Consensus 77 ~~~~~~~~~~-~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 151 (207)
T PRK13539 77 YLGHRNAMKP-ALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151 (207)
T ss_pred EecCCCcCCC-CCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9988764322 249999987653322211 23477899999998888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
||||+|||+.++..+++.|+++.++ |.|||++||+.+++.. |+++.+..
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 152 DEPTAALDAAAVALFAELIRAHLAQ--GGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999997543 6899999999999866 99887754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=339.89 Aligned_cols=209 Identities=26% Similarity=0.429 Sum_probs=177.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-----PTNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~~------ 99 (263)
..+|+++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 43 ~~~l~i~nl~~~~~~~-----~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 43 DAKLSVEDLDVYYGDD-----HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CceEEEEEEEEEeCCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3479999999999753 59999999999999999999999999999999999986 6899999853
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCC------------CCC-hHHHHHHHHHHHHHcCCC----cccC
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNL------------NLT-HDEVRSKVAKALDAVGMS----NYLQ 153 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~------------~~~-~~~~~~~~~~~l~~~~l~----~~~~ 153 (263)
.++|++|++..+. .|+.+|+.++.... +.. .....+.+.++++.+++. ...+
T Consensus 118 ~~~~~~~~~~i~~v~q~~~l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 195 (305)
T PRK14264 118 GVNLVELRKRVGMVFQSPNPFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD 195 (305)
T ss_pred cccHHHHhhceEEEccCCcccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc
Confidence 3789999975332 39999998753211 111 122345678889999884 4568
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEE-EE
Q 024738 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGA-FY 231 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v-~~ 231 (263)
+++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.+ .+||++ ++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~---~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhcCEEEEE
Confidence 89999999999999999999999999999999999999999999999999854 26999999999997 579997 57
Q ss_pred EeCCEEEEecChhhHHhh
Q 024738 232 MEDGKIVMQADGVSILNF 249 (263)
Q Consensus 232 l~~G~i~~~g~~~~~~~~ 249 (263)
|++|++++.|+++++++.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 899999999999888754
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=365.41 Aligned_cols=205 Identities=24% Similarity=0.313 Sum_probs=173.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~ 110 (263)
||+++|++++|+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .++|++|++..
T Consensus 1 ml~i~~ls~~~~~~-----~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~ 75 (530)
T PRK15064 1 MLSTANITMQFGAK-----PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFA 75 (530)
T ss_pred CEEEEEEEEEeCCc-----EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCc
Confidence 58999999999753 599999999999999999999999999999999999999999999974 58999998754
Q ss_pred cccccCHHHHHHhhccC-----------CCC---------------------ChHHHHHHHHHHHHHcCCCcc-cCCCCC
Q 024738 111 QVVMPTVEADVAFGLGN-----------LNL---------------------THDEVRSKVAKALDAVGMSNY-LQRPVQ 157 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~-----------~~~---------------------~~~~~~~~~~~~l~~~~l~~~-~~~~~~ 157 (263)
+. ..|+.+|+.++... ... ...+.++++.++++.+|+.+. .++++.
T Consensus 76 ~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 154 (530)
T PRK15064 76 FE-EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMS 154 (530)
T ss_pred CC-CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchh
Confidence 33 33899998764210 000 001223567789999999864 467899
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCE
Q 024738 158 TLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGK 236 (263)
Q Consensus 158 ~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~ 236 (263)
+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|||+||||++++ +.||++++|++|+
T Consensus 155 ~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~~~tiiivsHd~~~~~~~~d~i~~l~~g~ 229 (530)
T PRK15064 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-----RNSTMIIISHDRHFLNSVCTHMADLDYGE 229 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-----CCCeEEEEeCCHHHHHhhcceEEEEeCCE
Confidence 9999999999999999999999999999999999999999999864 257999999999998 5899999999999
Q ss_pred E-EEecChhhHHh
Q 024738 237 I-VMQADGVSILN 248 (263)
Q Consensus 237 i-~~~g~~~~~~~ 248 (263)
+ ++.|+++++.+
T Consensus 230 i~~~~g~~~~~~~ 242 (530)
T PRK15064 230 LRVYPGNYDEYMT 242 (530)
T ss_pred EEEecCCHHHHHH
Confidence 9 47888887754
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=321.42 Aligned_cols=183 Identities=26% Similarity=0.396 Sum_probs=154.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---PTNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~~---------- 99 (263)
.+.++||+|.|+++. ....+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 689999999997642 23579999999999999999999999999999999999999 8999999854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..++. .|+.+|+.++... . .++++.+||+||+||++|||||+.+|
T Consensus 82 ~~~i~~~~q~~~~~~~-~tv~~~l~~~~~~--------~---------------~~~~~~~LS~Ge~qrl~laral~~~p 137 (202)
T cd03233 82 PGEIIYVSEEDVHFPT-LTVRETLDFALRC--------K---------------GNEFVRGISGGERKRVSIAEALVSRA 137 (202)
T ss_pred cceEEEEecccccCCC-CcHHHHHhhhhhh--------c---------------cccchhhCCHHHHHHHHHHHHHhhCC
Confidence 37899998753332 3999998764210 0 56788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEE-ccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV-THRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiiv-tH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
++|||||||++||+.+++.+++.|++++++. +.|+|++ +|+.+++ +.||++++|++|+++..|
T Consensus 138 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 138 SVLCWDNSTRGLDSSTALEILKCIRTMADVL-KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999986532 4565555 5556776 689999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=331.01 Aligned_cols=195 Identities=32% Similarity=0.448 Sum_probs=171.5
Q ss_pred ceEEEEeEEEEECCCc--cc--cccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecC
Q 024738 32 VAIECSNLNYSITKKQ--RK--LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN 107 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~--~~--~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~ 107 (263)
++++++||++.|..+. .. ...+++||||+|++||++||+|+||||||||-|+|+||++|++|+|+|+++-.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i----- 77 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI----- 77 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-----
Confidence 4799999999996532 11 14799999999999999999999999999999999999999999999987420
Q ss_pred CCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 108 PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 108 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
..+ + .++..+++.++|+.+|+. +.++++|++|||||+||++|||||+.+|+++++|||+
T Consensus 78 ----~~~-~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 78 ----TKL-S---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred ----hhc-c---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCch
Confidence 001 1 344567789999999997 5899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhhhhh
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIKS 252 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
|+||...+.+++++|.++.++ .|.|.+++|||+..++ +|||+.+|..|++++.|+.++++.+..+
T Consensus 138 SaLDvSiqaqIlnLL~dlq~~-~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 138 SALDVSVQAQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred hhcchhHHHHHHHHHHHHHHH-hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999764 5799999999999996 6999999999999999999999885433
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=321.44 Aligned_cols=186 Identities=27% Similarity=0.424 Sum_probs=161.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
||+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ .
T Consensus 1 ml~~~~l~~~~~~~-----~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (200)
T PRK13540 1 MLDVIELDFDYHDQ-----PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75 (200)
T ss_pred CEEEEEEEEEeCCe-----eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhh
Confidence 48999999999753 599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++...+ ..|+.+|+.++.... .. ...+.++++.+++.+..++++.+||+||+||++||||++.+|++|
T Consensus 76 i~~~~q~~~~~~-~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 76 LCFVGHRSGINP-YLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eEEeccccccCc-CCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 789999875332 349999988753211 11 245778999999988888999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEE
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFY 231 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~ 231 (263)
||||||++||+.+++.+.+.|+++.+ .+.|||++||+.+.+..||.-.+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRA--KGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHH--cCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999999999754 36799999999999988887553
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=319.77 Aligned_cols=189 Identities=25% Similarity=0.360 Sum_probs=161.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|++.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 6 ~l~~~~l~~~~~~~~---~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 6 EIEVENLSVRYAPDL---PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred eEEEEEEEEEeCCCC---cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 699999999997521 2599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++.. +..|+.+|+.+.. .... +.+.++++ +++++.+|||||+||++|||||+.+|++
T Consensus 83 ~i~~v~q~~~~--~~~tv~~~l~~~~---~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~l 146 (207)
T cd03369 83 SLTIIPQDPTL--FSGTIRSNLDPFD---EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRV 146 (207)
T ss_pred hEEEEecCCcc--cCccHHHHhcccC---CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 48999999853 2349999986532 1121 22333333 4678999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecCh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
+||||||++||+.++..+++.|+++. + +.|+|++||+++++..||++++|++|++++.|++
T Consensus 147 lllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 147 LVLDEATASIDYATDALIQKTIREEF-T--NSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999973 2 5799999999999866999999999999887753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=374.26 Aligned_cols=202 Identities=31% Similarity=0.487 Sum_probs=169.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. ..++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 478 ~I~~~nVsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP--DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred eEEEEEEEEECCCCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 599999999997531 13699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|+|. .+..|++||+.++... .+.+ ++.++++..++. ........+||||||||++
T Consensus 556 ~i~~v~Q~~~--lF~gTIreNI~~g~~~--~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRla 627 (711)
T TIGR00958 556 QVALVGQEPV--LFSGSVRENIAYGLTD--TPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIA 627 (711)
T ss_pred hceEEecCcc--ccccCHHHHHhcCCCC--CCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHH
Confidence 4899999985 3456999999987432 2333 344455555443 3344455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++++|++||||||||+||+.+...+.+ .. . .+++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 628 lARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~---~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 628 IARALVRKPRVLILDEATSALDAECEQLLQE-SR-S---RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c---cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999999999999998887 22 1 23579999999999998999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 703 ~ 703 (711)
T TIGR00958 703 D 703 (711)
T ss_pred C
Confidence 4
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=320.18 Aligned_cols=169 Identities=43% Similarity=0.648 Sum_probs=147.7
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------------ceEEEecCCCCcccccC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------------PKSFVFQNPDHQVVMPT 116 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------------~~~~v~q~~~~~~~~~t 116 (263)
.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++....+..|
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 699999999999999999999999999999999999999999998854 37899998742223349
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 024738 117 VEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196 (263)
Q Consensus 117 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~ 196 (263)
+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 99999876433334444555678889999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 197 VIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 197 l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
+.+.|+++.++ |.|||++||++++
T Consensus 166 ~~~~l~~~~~~--~~tili~sH~~~~ 189 (190)
T TIGR01166 166 MLAILRRLRAE--GMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHc--CCEEEEEeecccc
Confidence 99999998643 6899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=373.24 Aligned_cols=202 Identities=29% Similarity=0.442 Sum_probs=172.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+.. .++|+|+||+|++|+.+||+||||||||||+|+|+|+++|++|+|++++
T Consensus 473 ~I~~~~vsf~y~~~----~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 473 DIVINDVSYSYGYG----SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred cEEEEEEEEEcCCC----CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 69999999999742 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-----------MSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. .+..|++||+.++.. ...+.++ +.++++..+ ++.........||||||||++
T Consensus 549 ~i~~v~Q~~~--lf~gTI~eNi~l~~~-~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 549 FINYLPQEPY--IFSGSILENLLLGAK-ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred heEEEecCce--ehhHHHHHHHhccCC-CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 4899999985 345599999998632 1233333 333444433 344445566789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.+.+.+.+.|+++ + ++|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~--~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--Q--DKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--c--CCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999874 2 479999999999999999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 698 ~ 698 (708)
T TIGR01193 698 R 698 (708)
T ss_pred c
Confidence 4
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=330.38 Aligned_cols=207 Identities=19% Similarity=0.272 Sum_probs=171.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++|++++|++.. ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|++++
T Consensus 18 ~~i~~~~l~~~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 18 GEIKIHDLCVRYENNL---KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred ceEEEEEEEEEeCCCC---CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 4799999999997521 2599999999999999999999999999999999999999999999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAr 171 (263)
.++|++|++.. +..|+.+|+..... .......+ .+.++++.+ +++...+.++.+||+||+||++|||
T Consensus 95 ~~i~~v~q~~~l--~~~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 95 SRLSIILQDPIL--FSGSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred hhEEEECCCCcc--cccHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 37999999853 23488888754211 11111111 123445555 6666677788999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+.+|++|||||||+|||+.++..+.+.++++. + +.|||++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~--~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAF-A--DRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C--CCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999999999863 2 5799999999999877999999999999999999888654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=365.78 Aligned_cols=206 Identities=28% Similarity=0.330 Sum_probs=173.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc--CceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--RPKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~--~~~~~v~q~~~ 109 (263)
++|+++||+++|+++ .++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++ ..++|++|++.
T Consensus 5 ~~l~i~~l~~~y~~~----~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 80 (556)
T PRK11819 5 YIYTMNRVSKVVPPK----KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ 80 (556)
T ss_pred EEEEEeeEEEEeCCC----CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC
Confidence 589999999999721 269999999999999999999999999999999999999999999986 36999999986
Q ss_pred CcccccCHHHHHHhhccC--------------CCCCh----------------------HHHHHHHHHHHHHcCCCcccC
Q 024738 110 HQVVMPTVEADVAFGLGN--------------LNLTH----------------------DEVRSKVAKALDAVGMSNYLQ 153 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~--------------~~~~~----------------------~~~~~~~~~~l~~~~l~~~~~ 153 (263)
.... .|+.+|+.++... ..... .+..+++.++++.+|+.. .+
T Consensus 81 ~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 81 LDPE-KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCC-CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 4332 3999998764210 00000 012346778899999964 78
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEE
Q 024738 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYM 232 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l 232 (263)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++. .||++++|
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-----~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-----GTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhhcCeEEEE
Confidence 9999999999999999999999999999999999999999999999998861 39999999999984 79999999
Q ss_pred eCCEEE-EecChhhHHh
Q 024738 233 EDGKIV-MQADGVSILN 248 (263)
Q Consensus 233 ~~G~i~-~~g~~~~~~~ 248 (263)
++|+++ +.|+.+++.+
T Consensus 234 ~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 234 DRGRGIPWEGNYSSWLE 250 (556)
T ss_pred eCCEEEEecCCHHHHHH
Confidence 999986 7788776543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=398.57 Aligned_cols=213 Identities=22% Similarity=0.258 Sum_probs=189.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
..+|+++||+|+|+++. +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~---~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTS---SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVH 2011 (2272)
T ss_pred CceEEEEEEEEEECCCC---ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHh
Confidence 35899999999997521 3699999999999999999999999999999999999999999999965
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.+||+||++.....+ |++|++.+....++...++.++.+.++++.++|.++.++++++||||||||++||+||+.+|+
T Consensus 2012 ~~IGy~pQ~~~L~~~L-Tv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLL-TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhEEEEeccccCCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 389999987654444 999999876544455555556778889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||+|||+.+++.+++.|+++.++ |+|||++||++++++ +|||+++|++|+++..|++.++.+.
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~--g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIRE--GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999998643 689999999999985 7999999999999999999988654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=361.95 Aligned_cols=210 Identities=21% Similarity=0.303 Sum_probs=175.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcC-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKR----------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~----------- 99 (263)
++|+++|++++|+.+. ...+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+++
T Consensus 256 ~~l~~~~l~~~~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 256 VILEARNLTCWDVINP--HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred ceEEEeCCcccccccc--cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 4899999999994210 12599999999999999999999999999999999999985 899999854
Q ss_pred ---ceEEEecCCC--CcccccCHHHHHHhhcc--CC---CCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHH
Q 024738 100 ---PKSFVFQNPD--HQVVMPTVEADVAFGLG--NL---NLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ---~~~~v~q~~~--~~~~~~tv~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|++. ..+...|+.+|+.++.. .. .....+.++++.++++.+++.. ..++++.+|||||||||+
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 3799999863 12222389999877531 11 1122334566888999999974 689999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++|||++++ ++||++++|++|+++...+..+
T Consensus 414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999998653 67999999999998 5899999999999998886544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=318.07 Aligned_cols=179 Identities=38% Similarity=0.606 Sum_probs=150.5
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccc
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVM 114 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~ 114 (263)
+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.- +.+. ..
T Consensus 1 ~~~~l~~~~~~~-----~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~--~~~~-----~~ 68 (180)
T cd03214 1 EVENLSVGYGGR-----TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LASL-----SP 68 (180)
T ss_pred CeeEEEEEECCe-----eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCcC-----CH
Confidence 478999999753 59999999999999999999999999999999999999999999998631 1110 00
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~ 194 (263)
......+.+. .++++.+++.+..++++.+||+||+||++|||||+.+|+++||||||++||+.++
T Consensus 69 ~~~~~~i~~~---------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 69 KELARKIAYV---------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHHHHHhHH---------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 0111112111 1188899999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
+.+.+.|.++.++ .+.|+|++||+++++ +.||++++|++|++++.|
T Consensus 134 ~~~~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARE-RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999998643 257999999999997 689999999999987653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=331.98 Aligned_cols=200 Identities=24% Similarity=0.378 Sum_probs=165.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
...|+++|+++. + .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.++|++|++..
T Consensus 37 ~~~l~i~nls~~-~------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l 109 (282)
T cd03291 37 DNNLFFSNLCLV-G------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109 (282)
T ss_pred CCeEEEEEEEEe-c------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccc
Confidence 457999999985 2 259999999999999999999999999999999999999999999999999999999753
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
+ ..|+.+|+.++... ... ++.++++.+++.+ ..++++.+||+|||||++|||||+.+|++
T Consensus 110 ~--~~tv~enl~~~~~~---~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 110 M--PGTIKENIIFGVSY---DEY----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred c--ccCHHHHhhccccc---CHH----HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 3 24999998864321 111 1122333333322 23455689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAV-KNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l-~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+|||+.++..+.+.+ .++. + +.|||++||+++.+..||++++|++|++++.|++.++...
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~-~--~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLM-A--NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhh-C--CCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999998865 4543 2 4799999999999888999999999999999999888753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=313.15 Aligned_cols=166 Identities=33% Similarity=0.551 Sum_probs=147.8
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++|++++|+++. .++++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++ .+
T Consensus 1 i~~~~~~~~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (178)
T cd03247 1 LSINNVSFSYPEQE---QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLI 77 (178)
T ss_pred CEEEEEEEEeCCCC---ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhE
Confidence 47899999997531 2599999999999999999999999999999999999999999999875 27
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+ ..|+.+|+ +.+||+||+||++||||++.+|++||
T Consensus 78 ~~~~q~~~~~--~~tv~~~i----------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 78 SVLNQRPYLF--DTTLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EEEccCCeee--cccHHHhh----------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8999987432 23777765 78999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
|||||++||+.+++.+++.|+++. + +.|||++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVL-K--DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHc-C--CCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999873 2 57999999999998889999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=362.77 Aligned_cols=206 Identities=28% Similarity=0.471 Sum_probs=171.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++|++|+|+++ .++|+|+||++++|++++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 334 ~I~~~~vsf~y~~~----~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 334 AVEFDDVSFSYDNS----RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred eEEEEEEEEEeCCC----CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 59999999999743 2599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH-----HHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++. .+..|+++|+.++.. ..+.++..+.+. +.++.+ |++.........||||||||++||||
T Consensus 410 ~i~~v~Q~~~--lf~~Ti~~Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 410 NIAVVFQDAG--LFNRSIEDNIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred heEEEecCcc--cccccHHHHHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 5899999985 345599999988632 233333322211 122222 34444444566899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|+++|||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.++.||++++|++|++++.|+++++++.
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~---~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELMK---GRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 9999999999999999999999999999988642 5799999999999999999999999999999999998754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=363.77 Aligned_cols=204 Identities=29% Similarity=0.464 Sum_probs=173.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++.. .++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 330 ~i~~~~v~f~y~~~~---~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD---RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred eEEEEEEEEEcCCCC---CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHh
Confidence 599999999996532 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|+|. .+..|+++|+.++.. ...+. +++.++++.+|+.+. .......||||||||++
T Consensus 407 ~i~~v~Q~~~--lf~~Ti~~Ni~~~~~-~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 407 QVALVSQDVV--LFNDTIANNIAYGRT-EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred hceEEccCcc--cccccHHHHHhcCCC-CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 4899999985 345699999987632 12233 334455565555432 33344679999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++.+|+++|||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+.+.++.||+|++|++|++++.|+.+++++
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~---~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLMQ---GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC---CCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999998742 479999999999999999999999999999999999876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 557 ~ 557 (571)
T TIGR02203 557 R 557 (571)
T ss_pred c
Confidence 4
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=359.15 Aligned_cols=205 Identities=24% Similarity=0.370 Sum_probs=175.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 255 ~~~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 255 EVRLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred CcEEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 35799999984 279999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCC--CcccccCHHHHHHhhcc-CC----C-CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ---PKSFVFQNPD--HQVVMPTVEADVAFGLG-NL----N-LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ---~~~~v~q~~~--~~~~~~tv~~~~~~~~~-~~----~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++. ..+...|+.+|+.++.. .. + ....+..+++.++++.+++. +..++++.+|||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv 404 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV 404 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHH
Confidence 3799999863 12222399999876421 11 1 12233456688999999995 678999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++ .+||++++|++|+++..++++++
T Consensus 405 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE--GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999999999999999998643 68999999999997 58999999999999999988776
Q ss_pred H
Q 024738 247 L 247 (263)
Q Consensus 247 ~ 247 (263)
.
T Consensus 483 ~ 483 (501)
T PRK10762 483 T 483 (501)
T ss_pred C
Confidence 3
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=311.95 Aligned_cols=160 Identities=33% Similarity=0.587 Sum_probs=142.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|++.. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .
T Consensus 1 i~~~~l~~~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (173)
T cd03246 1 LEVENVSFRYPGAE---PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH 77 (173)
T ss_pred CEEEEEEEEcCCCC---CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhh
Confidence 47899999997521 2599999999999999999999999999999999999999999999864 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++..+ ..|+.+|+ |||||+||++|||||+.+|++|
T Consensus 78 i~~~~q~~~~~--~~tv~~~l-------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 78 VGYLPQDDELF--SGSIAENI-------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred eEEECCCCccc--cCcHHHHC-------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 78999987432 23777765 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
||||||++||+.++..+.+.|+++.+ +|+|||++||++++++.||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA--AGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999854 36899999999998888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=310.93 Aligned_cols=160 Identities=39% Similarity=0.558 Sum_probs=143.4
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
++++|++++|++. ++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (173)
T cd03230 1 IEVRNLSKRYGKK-----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75 (173)
T ss_pred CEEEEEEEEECCe-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccE
Confidence 4789999999753 599999999999999999999999999999999999999999999864 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+. ..|+.+|+. |||||+||++|||||+.+|++||
T Consensus 76 ~~~~q~~~~~~-~~tv~~~~~------------------------------------LS~G~~qrv~laral~~~p~ill 118 (173)
T cd03230 76 GYLPEEPSLYE-NLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLI 118 (173)
T ss_pred EEEecCCcccc-CCcHHHHhh------------------------------------cCHHHHHHHHHHHHHHcCCCEEE
Confidence 89999875332 238888763 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
|||||++||+.++..+.+.|++++++ |.|+|++||+.+++. .||++++|++|++
T Consensus 119 lDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 119 LDEPTSGLDPESRREFWELLRELKKE--GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999998653 679999999999985 8999999999874
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=377.99 Aligned_cols=209 Identities=35% Similarity=0.501 Sum_probs=178.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|+|+.+. +.++|+|+||+|++|+.++|+|||||||||++++|.+++.|++|+|+++|
T Consensus 350 ~ief~nV~FsYPsRp--dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP--DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ceEEEEEEecCCCCC--cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 699999999999763 46799999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH-----HHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK-----ALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
++|.|+|+|. ++..|++||+.++... .+.++..+.++. .+..+ |++.....+..+||||||||+|||||
T Consensus 428 ~iglV~QePv--lF~~tI~eNI~~G~~d--at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 428 QIGLVSQEPV--LFATTIRENIRYGKPD--ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred hcCeeeechh--hhcccHHHHHhcCCCc--ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 4899999995 3556999999998533 334444333221 12221 44555555667899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
|+++|++||||||||+||+++++.+.+.|.+.. .|+|.|+|+|++..++.||++++|++|+|++.|+++|+++..
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~---~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDKAS---KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHHhh---cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc
Confidence 999999999999999999999999999999874 367999999999999999999999999999999999998863
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=360.15 Aligned_cols=203 Identities=23% Similarity=0.297 Sum_probs=175.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
.+|+++||+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.
T Consensus 318 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~ 392 (530)
T PRK15064 318 NALEVENLTKGFDNG-----PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHA 392 (530)
T ss_pred ceEEEEeeEEeeCCc-----eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccc
Confidence 489999999999753 599999999999999999999999999999999999999999999976 6899999864
Q ss_pred Ccc-cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 110 HQV-VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 110 ~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
..+ ...|+.+|+.+... . ....+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 393 ~~~~~~~t~~~~~~~~~~-~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~ 467 (530)
T PRK15064 393 YDFENDLTLFDWMSQWRQ-E----GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467 (530)
T ss_pred ccCCCCCcHHHHHHHhcc-C----CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 222 22389998764211 1 11235577899999995 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEE-EecChhhHHhh
Q 024738 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV-MQADGVSILNF 249 (263)
Q Consensus 188 ~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~-~~g~~~~~~~~ 249 (263)
+||+.++..+.+.|+++ + .|||+||||++++ .+||++++|++|+++ ..|++.++++.
T Consensus 468 ~LD~~~~~~l~~~l~~~----~-~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 468 HMDMESIESLNMALEKY----E-GTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCHHHHHHHHHHHHHC----C-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999876 2 3999999999998 479999999999998 78888887654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=322.10 Aligned_cols=188 Identities=35% Similarity=0.445 Sum_probs=161.7
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEEecCCCCcccc-cCHHHHHHhhccC--
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFVFQNPDHQVVM-PTVEADVAFGLGN-- 127 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~-- 127 (263)
|+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++.....+ .|+.+|+.++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999976 389999997543222 3899998765321
Q ss_pred --CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 128 --LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 128 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
......+.++++.++++.+++++..++++.+||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 111122334567889999999988999999999999999999999999999999999999999999999999999986
Q ss_pred hcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 206 GDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+ +|.|+|++||+++++ +.||+++++ +|+++..|+++++.+.
T Consensus 161 ~--~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 161 G--AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred H--cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 4 368999999999987 579999999 8999999999887654
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=316.52 Aligned_cols=184 Identities=27% Similarity=0.384 Sum_probs=156.4
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------ce
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------PK 101 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~~ 101 (263)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (198)
T TIGR01189 1 LAARNLACSRGER-----MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI 75 (198)
T ss_pred CEEEEEEEEECCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhhe
Confidence 5789999999753 599999999999999999999999999999999999999999999865 36
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++.... ..|+.+|+.+...... . + .+++.++++.+++.+..++++.+||||||||++||||++.+|+++|
T Consensus 76 ~~~~q~~~~~~-~~tv~~~l~~~~~~~~--~-~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 76 LYLGHLPGLKP-ELSALENLHFWAAIHG--G-A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred EEeccCccccc-CCcHHHHHHHHHHHcC--C-c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999865332 2499999877543222 1 1 3456788999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEE
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAF 230 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~ 230 (263)
|||||++||+.++..+.+.|.++.++ |.|||++||+...+ .|++++
T Consensus 151 lDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLAR--GGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEEcccccc-cceEEe
Confidence 99999999999999999999998543 57999999998543 245554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-46 Score=358.07 Aligned_cols=207 Identities=29% Similarity=0.416 Sum_probs=175.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++|++|+|++.. .++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 316 ~i~~~~v~~~y~~~~---~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 316 HLSVENVTIVPPGGK---KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred eEEEEEEEEEcCCCC---ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 699999999996421 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK-----VAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++.. +..|+++|+.++.. ..+.++..+. +.+.++.+ |++.........||||||||++||||
T Consensus 393 ~i~~v~q~~~l--f~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 393 HIGYLPQDVEL--FPGTVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred heEEecCCccc--ccccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 48999999853 34599999986432 2333333222 23445555 66666777889999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|+++|++|||||||++||+.+++.+.+.|.++.. +++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA--RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999998742 2579999999999888899999999999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=360.42 Aligned_cols=206 Identities=28% Similarity=0.350 Sum_probs=172.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
.+|+++||+++|++. .++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .++|++|++.
T Consensus 3 ~~i~~~nls~~~~~~----~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK----KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEEeeEEEecCCC----CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 489999999999721 2599999999999999999999999999999999999999999999863 6999999986
Q ss_pred CcccccCHHHHHHhhccC--------------CCCChHH----------------------HHHHHHHHHHHcCCCcccC
Q 024738 110 HQVVMPTVEADVAFGLGN--------------LNLTHDE----------------------VRSKVAKALDAVGMSNYLQ 153 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~~~l~~~~~ 153 (263)
.+.. .|+.+|+.++... ......+ ...++.++++.+++.. .+
T Consensus 79 ~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~ 156 (552)
T TIGR03719 79 LDPT-KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD 156 (552)
T ss_pred CCCC-CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc
Confidence 4333 3999998764311 0000010 1235567788888864 68
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEE
Q 024738 154 RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYM 232 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l 232 (263)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ . .|||+||||++++. .||++++|
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~--~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---P--GTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---C--CeEEEEeCCHHHHHhhcCeEEEE
Confidence 899999999999999999999999999999999999999999999999875 1 39999999999985 79999999
Q ss_pred eCCEEE-EecChhhHHh
Q 024738 233 EDGKIV-MQADGVSILN 248 (263)
Q Consensus 233 ~~G~i~-~~g~~~~~~~ 248 (263)
++|+++ ..|+.+++.+
T Consensus 232 ~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWLE 248 (552)
T ss_pred ECCEEEEecCCHHHHHH
Confidence 999976 6788876554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-46 Score=314.30 Aligned_cols=177 Identities=28% Similarity=0.413 Sum_probs=151.1
Q ss_pred eEEEEeEEEEECCCc-cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQ-RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~-~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~---------- 99 (263)
.|+++||+++|++.. ....++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 589999999997510 00136999999999999999999999999999999999999 99999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|++|++..+. ..|+.+|+.++.. + . +||+||+||++|||||+.+|++
T Consensus 83 ~i~~~~q~~~~~~-~~t~~~~i~~~~~------------~-------~----------~LS~G~~qrv~laral~~~p~i 132 (194)
T cd03213 83 IIGYVPQDDILHP-TLTVRETLMFAAK------------L-------R----------GLSGGERKRVSIALELVSNPSL 132 (194)
T ss_pred eEEEccCcccCCC-CCcHHHHHHHHHH------------h-------c----------cCCHHHHHHHHHHHHHHcCCCE
Confidence 3789999875332 2389998865321 0 0 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc-hh-hcCCEEEEEeCCEEEEec
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-EL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~-~~-~~~d~v~~l~~G~i~~~g 241 (263)
+||||||++||+.+++.+.+.|+++.++ ++|+|++||+++ ++ +.||++++|++|++++.|
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADT--GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999998542 689999999997 55 579999999999997653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=344.60 Aligned_cols=203 Identities=31% Similarity=0.451 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
+.+++++++|+|++ ..++++|||+|++||++||+|+||||||||+++|.|+++|++|+|+++|+
T Consensus 3 ~~l~~~~itK~f~~-----~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~ 77 (501)
T COG3845 3 PALEMRGITKRFPG-----VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77 (501)
T ss_pred ceEEEeccEEEcCC-----EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHH
Confidence 46999999999985 46999999999999999999999999999999999999999999999863
Q ss_pred ---eEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 101 ---KSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 101 ---~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
||+|+|++.+...+ ||.||+.++.... ..+..+..+++.++.+++||+-..++++.+||-||||||.|.+||+
T Consensus 78 ~~GIGMVhQHF~Lv~~l-TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 78 RLGIGMVHQHFMLVPTL-TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY 156 (501)
T ss_pred HcCCcEEeecccccccc-chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh
Confidence 89999998655444 9999999986432 3456677889999999999998889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
++|++|||||||+-|-|...+++++.+++++++ |+|||++||.++++ ++|||+-||++|+++...+
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~--G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEILRRLAAE--GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999764 78999999999998 6899999999999987766
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=312.87 Aligned_cols=163 Identities=28% Similarity=0.418 Sum_probs=144.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++| +|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 73 (182)
T cd03215 3 PVLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI 73 (182)
T ss_pred cEEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHH
Confidence 479999999987 69999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCC--CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 --PKSFVFQNPD--HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 --~~~~v~q~~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|++|++. ..+...|+.+|+.++.. ||+|||||++|||||+.
T Consensus 74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 74 RAGIAYVPEDRKREGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred hCCeEEecCCcccCcccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHHHHHHcc
Confidence 3789999853 12222389998866421 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
+|++|||||||+|||+.+++.+.+.|+++.++ +.|+|++||+++++ ++||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADA--GKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998642 67999999999988 57999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=311.35 Aligned_cols=162 Identities=41% Similarity=0.571 Sum_probs=143.1
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
|+++|++++|+++ ++++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (178)
T cd03229 1 LELKNVSKRYGQK-----TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75 (178)
T ss_pred CEEEEEEEEECCe-----EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHh
Confidence 4789999999753 599999999999999999999999999999999999999999998854
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|++|++..+. ..|+.+|+.+. ||+|||||++|||||+.+|+
T Consensus 76 ~~i~~~~q~~~~~~-~~t~~~~l~~~----------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 76 RRIGMVFQDFALFP-HLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred hcEEEEecCCccCC-CCCHHHheeec----------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 3678888875322 23888876542 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK 236 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~ 236 (263)
++||||||+|||+.++..+.+.|++++++ .+.|+|++||+++++. .||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQ-LGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999998653 2579999999999985 799999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=392.39 Aligned_cols=211 Identities=23% Similarity=0.304 Sum_probs=187.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++||+|.|+++. +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 927 ~~L~I~nLsK~y~~~~---k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~ 1003 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSG---RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003 (2272)
T ss_pred ceEEEEeEEEEecCCC---ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhh
Confidence 4799999999996311 3699999999999999999999999999999999999999999999865
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.+||++|++..... .|+++|+.++....+...++.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++
T Consensus 1004 ~IG~~pQ~~~L~~~-LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1004 SLGMCPQHNILFHH-LTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred cEEEEecCCcCCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 37999998754333 39999998875544454455567788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+|||+.+++.++++|+++. + |+|||++||+++++. +|||+++|++|+++..|++..+.+.
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~-~--g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR-S--GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh-C--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999983 2 689999999999985 7999999999999999999888654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=355.86 Aligned_cols=206 Identities=26% Similarity=0.361 Sum_probs=171.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcC----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKR---------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~---------- 99 (263)
.++|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|++++
T Consensus 258 ~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 258 EPRIVLNNGVVSYNDR-----PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW 332 (490)
T ss_pred CceEEEeceEEEECCe-----eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH
Confidence 4589999999999753 599999999999999999999999999999999998876 699999864
Q ss_pred ----ceEEEecCCCCcccc-cCHHHHHHhhccC----CCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVM-PTVEADVAFGLGN----LNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~-~tv~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~l 169 (263)
.++|++|++...... .++.+++.++... ......+.++++.++++.+++.+ ..++++.+|||||||||+|
T Consensus 333 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALI 412 (490)
T ss_pred HHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHH
Confidence 279999986432222 3566665433211 11112233456888999999987 8899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-h-cCCEEEEEeCCEEEEecC
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~-~~d~v~~l~~G~i~~~g~ 242 (263)
||||+.+|++|||||||+|||+.+++.+.+.|++++++ ++.|||++|||++++ + +||++++|++|++++...
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE-GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 99999999999999999999999999999999998754 345799999999998 4 489999999999887654
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=307.16 Aligned_cols=162 Identities=30% Similarity=0.443 Sum_probs=144.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCCc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDHQ 111 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~~ 111 (263)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++..
T Consensus 1 i~~~~~~~~~~~~----~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~- 75 (166)
T cd03223 1 IELENLSLATPDG----RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL- 75 (166)
T ss_pred CEEEEEEEEcCCC----CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc-
Confidence 4789999999642 2599999999999999999999999999999999999999999999976 69999999753
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
+..|+.+|+.++ ++.+||||||||++|||||+.+|+++||||||++||+
T Consensus 76 -~~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 76 -PLGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred -ccccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 233899997642 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
.++..+.+.|+++ +.|+|++||+.+....||++++|+++.
T Consensus 125 ~~~~~l~~~l~~~-----~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKEL-----GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHh-----CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999875 369999999998777899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=312.83 Aligned_cols=176 Identities=30% Similarity=0.394 Sum_probs=151.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcC---------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKR---------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~---------~~ 101 (263)
.|+++|+++.|++.. ...++|+|+||+|++|++++|+||||||||||+|+|+|+. +|++|+|.+++ .+
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 689999999997421 0135999999999999999999999999999999999986 48999999864 47
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|++|++..+. ..|+.+|+.++.. ++ +|||||+||++|||||+.+|++||
T Consensus 82 ~~~~q~~~~~~-~~tv~~~l~~~~~----------------~~-------------~LSgGe~qrv~la~al~~~p~vll 131 (192)
T cd03232 82 GYVEQQDVHSP-NLTVREALRFSAL----------------LR-------------GLSVEQRKRLTIGVELAAKPSILF 131 (192)
T ss_pred EEecccCcccc-CCcHHHHHHHHHH----------------Hh-------------cCCHHHhHHHHHHHHHhcCCcEEE
Confidence 99999875332 2399999876420 00 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeC-CEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMED-GKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~-G~i~~~g 241 (263)
|||||++||+.++..+++.|+++++ .|.|||++||+++. + +.||++++|++ |++++.|
T Consensus 132 lDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 132 LDEPTSGLDSQAAYNIVRFLKKLAD--SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHH--cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999864 36899999999984 4 68999999999 9998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=357.26 Aligned_cols=205 Identities=23% Similarity=0.341 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 256 ~~l~~~~~~~~---------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 256 VRLRLDGLKGP---------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred cEEEEeccccC---------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 46999999732 389999999999999999999999999999999999999999999864
Q ss_pred --ceEEEecCCC--CcccccCHHHHHHhhccCC----C--CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHH
Q 024738 100 --PKSFVFQNPD--HQVVMPTVEADVAFGLGNL----N--LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 --~~~~v~q~~~--~~~~~~tv~~~~~~~~~~~----~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++. ..+...|+.+|+.++.... + ......++.+.++++.+++. +..++++.+|||||||||+
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~ 406 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAI 406 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHH
Confidence 3689999863 1222348999987643211 1 12223345678899999994 6789999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+.+|++|||||||+|||+.++.++++.|.++++. |.|||++|||++++ ++||++++|++|++++.|++++..
T Consensus 407 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 407 LGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ--GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999998653 67999999999998 589999999999999999887654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=363.78 Aligned_cols=207 Identities=25% Similarity=0.418 Sum_probs=174.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. .++|+|+||+|++|+.++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 455 ~i~~~~vsf~y~~~~---~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 455 AITFENIRFRYAPDS---PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred eEEEEEEEEEcCCCC---ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHH
Confidence 699999999996431 3599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++. .+..|+++|+.++.. ..+.++..+.+ .+.++.+ |++.........||||||||++||||
T Consensus 532 ~i~~v~q~~~--lf~~ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 532 QMGVVLQENV--LFSRSIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred hCeEEccCCe--ehhhhHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 3799999975 344599999987532 23333332222 1223333 45555566678999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.++.||++++|++|++++.|+++++++.
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~---~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC---RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh---CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 999999999999999999999999999999874 25799999999999988999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=358.58 Aligned_cols=206 Identities=26% Similarity=0.442 Sum_probs=174.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++|++|+|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 334 ~i~~~~v~~~y~~~----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 334 AVEFRHITFEFANS----SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred eEEEEEEEEECCCC----CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHh
Confidence 59999999999753 2589999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH-----HHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++.. +..|+++|+.++.. ..+.++..+.++ +.+..+ |++.........||||||||++||||
T Consensus 410 ~i~~v~q~~~l--f~~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 410 SIATVFQDAGL--FNRSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485 (585)
T ss_pred heEEEccCCcc--CcccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 47999999853 34599999988632 223333333222 222222 55555667788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+.+|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.++.||++++|++|++++.|+.+++.+.
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~---~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR---KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 999999999999999999999999999999873 25799999999999988999999999999999999998764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=345.73 Aligned_cols=201 Identities=26% Similarity=0.462 Sum_probs=175.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+.+ .++|+++||+|++||.+||+|+|||||||++|+|.++.. ++|+|+++|
T Consensus 351 ~I~F~dV~f~y~~k----~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK----RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred cEEEEeeEEEeCCC----CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhh
Confidence 49999999999875 359999999999999999999999999999999999999 999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~ 168 (263)
.||||||+.. .+..|+.+|+.++.. ..+.++ +.+++++.|+.+ ....+...|||||||||+
T Consensus 426 ~Ig~VPQd~~--LFndTIl~NI~YGn~--sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 426 SIGVVPQDSV--LFNDTILYNIKYGNP--SASDEE----VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred heeEeCCccc--ccchhHHHHhhcCCC--CcCHHH----HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 3899999874 455699999998843 234333 445556666543 244556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++.+|+++++|||||+||.++..++++.+.+.. .++|+|+|-|++..++.||+|+++++|++.+.|+.++++.
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~---~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDMIMDVM---SGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc---CCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999999843 3689999999999999999999999999999999999998
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
+
T Consensus 575 ~ 575 (591)
T KOG0057|consen 575 P 575 (591)
T ss_pred h
Confidence 3
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=357.29 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=173.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 266 ~~~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 335 (510)
T PRK15439 266 APVLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR 335 (510)
T ss_pred CceEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHH
Confidence 34899999983 169999999999999999999999999999999999999999999864
Q ss_pred ---ceEEEecCCC--CcccccCHHHHHHhhc-c--CCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHH
Q 024738 100 ---PKSFVFQNPD--HQVVMPTVEADVAFGL-G--NLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ---~~~~v~q~~~--~~~~~~tv~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|++. ..+...|+.+|+.... . .........++.+.++++.+++. ...++++.+|||||||||+||
T Consensus 336 ~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la 415 (510)
T PRK15439 336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIA 415 (510)
T ss_pred HhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHH
Confidence 3799999852 1122238888875321 1 01111223345678899999997 788999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++ ++||++++|++|+++..++++++.+
T Consensus 416 ~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~--g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 416 KCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ--NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 9999999999999999999999999999999998653 68999999999998 5799999999999999998877653
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=332.71 Aligned_cols=225 Identities=29% Similarity=0.377 Sum_probs=195.0
Q ss_pred CCcceEEEEeEEEEECCCc------cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---
Q 024738 29 ESGVAIECSNLNYSITKKQ------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--- 99 (263)
Q Consensus 29 ~~~~~l~~~nl~~~y~~~~------~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--- 99 (263)
.+.+.++.++++..|.-+. .+...+++++||++.+||.+||+|+||||||||-++|.+|+++. |+|.|.|
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i 350 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDI 350 (534)
T ss_pred CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccc
Confidence 3456899999999996431 22356899999999999999999999999999999999999766 9999964
Q ss_pred -------------ceEEEecCCCCcccc-cCHHHHHHhhccCC--CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChH
Q 024738 100 -------------PKSFVFQNPDHQVVM-PTVEADVAFGLGNL--NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGG 162 (263)
Q Consensus 100 -------------~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 162 (263)
++-.|||||...+.. .||.+-+.-++... ..+..+..+++.++|+.+||+ .-.+++|+++|||
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG 430 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG 430 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence 367899999644322 28988888776543 456778888999999999998 4689999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
||||++||||++.+|++++||||||+||..-+.+++++|+++.++ .+.+.+++|||+..++ .||+|+||++|+|++.|
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k-~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK-HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 999999999999999999999999999999999999999999764 5799999999999995 79999999999999999
Q ss_pred ChhhHHhhhhhhhh
Q 024738 242 DGVSILNFIKSRQS 255 (263)
Q Consensus 242 ~~~~~~~~~~~~~~ 255 (263)
+.++++++....++
T Consensus 510 ~~~~if~~P~~~YT 523 (534)
T COG4172 510 PTEAVFANPQHEYT 523 (534)
T ss_pred CHHHHhcCCCcHHH
Confidence 99999987544433
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=357.08 Aligned_cols=204 Identities=32% Similarity=0.492 Sum_probs=173.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+... ..++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 337 ~i~~~~v~f~y~~~~--~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 337 EIEFEQVNFAYPARP--DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred eEEEEEEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 599999999997421 13699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|+||++. .+..|+++|+.++... .+.+ ++.++++.+++ +.........||||||||++
T Consensus 415 ~i~~~~Q~~~--lf~~Ti~~Ni~~~~~~--~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 415 RMALVPQDPV--LFAASVMENIRYGRPD--ATDE----EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred hceEEccCCc--cccccHHHHHhcCCCC--CCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 4899999985 3455999999886322 2222 33344444443 33344556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++++|++||||||||+||+.+++.+++.|+++.+ ++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~---~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMK---GRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC---CCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999998742 579999999999998999999999999999999998876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 564 ~ 564 (576)
T TIGR02204 564 K 564 (576)
T ss_pred c
Confidence 4
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=356.35 Aligned_cols=203 Identities=25% Similarity=0.394 Sum_probs=172.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++++|+... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 313 ~I~~~~v~~~y~~~~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 313 ELDVNIRQFTYPQTD---HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred cEEEEEEEEECCCCC---CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 599999999997531 3699999999999999999999999999999999999999999999974
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----------GMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.++|++|++.. +..|+++|+.++.. ..+.++. .++++.. |++...+.....||||||||++
T Consensus 390 ~i~~v~q~~~l--f~~ti~~Ni~~~~~--~~~~~~~----~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 390 RLAVVSQTPFL--FSDTVANNIALGRP--DATQQEI----EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred heEEEccCCee--ccccHHHHHhcCCC--CCCHHHH----HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 47999999853 44599999987632 2233332 3333433 3344455667889999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|++++.|+.+++.+
T Consensus 462 lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 462 IARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG---EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh---CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999874 2579999999999998899999999999999999999876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 539 ~ 539 (569)
T PRK10789 539 Q 539 (569)
T ss_pred c
Confidence 4
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=312.59 Aligned_cols=183 Identities=23% Similarity=0.339 Sum_probs=156.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------ceEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------PKSF 103 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------~~~~ 103 (263)
+|+++|++++|+++ .+++ +||+|++||+++|+|+||||||||+++|+|+.+|++|+|.+++ .++|
T Consensus 1 ~l~~~~l~~~~~~~-----~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (195)
T PRK13541 1 MLSLHQLQFNIEQK-----NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74 (195)
T ss_pred CeEEEEeeEEECCc-----EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEe
Confidence 48899999999652 3554 9999999999999999999999999999999999999999976 2689
Q ss_pred EecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
++|++... +..|+.+|+.+...... ..+++.++++.+++.+..++++.+||+|||||++||||++.+|+++|||
T Consensus 75 ~~~~~~~~-~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD 148 (195)
T PRK13541 75 IGHNLGLK-LEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD 148 (195)
T ss_pred ccCCcCCC-ccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99886432 33499999987542221 1345667889999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEE
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGA 229 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v 229 (263)
|||+|||+.++..+.+.|++..+ ++.|+|++||+++.++.||.+
T Consensus 149 EP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 149 EVETNLSKENRDLLNNLIVMKAN--SGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCccccchhhee
Confidence 99999999999999999987543 368999999999998888865
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=313.21 Aligned_cols=171 Identities=29% Similarity=0.384 Sum_probs=146.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcC------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKR------------ 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~------------ 99 (263)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (200)
T cd03217 1 LEIKDLHVSVGGK-----EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERA 75 (200)
T ss_pred CeEEEEEEEeCCE-----EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHh
Confidence 4789999999753 599999999999999999999999999999999999 579999999864
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.++|++|++..+.. .++.+++ ++...+|||||+||++|||||+.+|
T Consensus 76 ~~~i~~v~q~~~~~~~-~~~~~~l-------------------------------~~~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 76 RLGIFLAFQYPPEIPG-VKNADFL-------------------------------RYVNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred hCcEEEeecChhhccC-ccHHHHH-------------------------------hhccccCCHHHHHHHHHHHHHhcCC
Confidence 27788887643221 1444332 1233689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh--cCCEEEEEeCCEEEEecCh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE--YADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~--~~d~v~~l~~G~i~~~g~~ 243 (263)
++|||||||++||+.++..+++.|++++++ +.|||++||+++.+. .||++++|++|++++.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~--~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 999999999999999999999999998642 579999999999985 7999999999999999844
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=355.19 Aligned_cols=207 Identities=27% Similarity=0.353 Sum_probs=173.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++.+ .++|++|++
T Consensus 320 ~~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~ 394 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK-----LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSR 394 (552)
T ss_pred CeEEEEeeEEEEECCe-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCc
Confidence 4589999999999753 599999999999999999999999999999999999999999999965 489999986
Q ss_pred CCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 109 DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
.......|+.+|+.++......... ...+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~ 472 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472 (552)
T ss_pred cccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 3222223999999876432222211 123557899999974 5789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC-CEEE-EecChhhHHhh
Q 024738 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED-GKIV-MQADGVSILNF 249 (263)
Q Consensus 188 ~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~-G~i~-~~g~~~~~~~~ 249 (263)
|||+.++..+.+.|+++. + |||+||||++++ .+||++++|++ |++. ..|+..++.+.
T Consensus 473 ~LD~~~~~~l~~~l~~~~----~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 473 DLDVETLRALEEALLEFA----G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred CCCHHHHHHHHHHHHHCC----C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 999999999999999871 3 899999999998 47999999987 5876 56777666543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=355.02 Aligned_cols=207 Identities=27% Similarity=0.358 Sum_probs=174.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|++
T Consensus 322 ~~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~ 396 (556)
T PRK11819 322 DKVIEAENLSKSFGDR-----LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSR 396 (556)
T ss_pred CeEEEEEeEEEEECCe-----eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCch
Confidence 3589999999999753 599999999999999999999999999999999999999999999965 489999986
Q ss_pred CCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 109 DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
.......|+.+|+.++......... ...+..+++.+++.. ..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 474 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 (556)
T ss_pred hhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 2222223999999876432222211 123456899999974 5799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC-CEEE-EecChhhHHhh
Q 024738 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED-GKIV-MQADGVSILNF 249 (263)
Q Consensus 188 ~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~-G~i~-~~g~~~~~~~~ 249 (263)
|||+.++..+.+.|.++ . + |||+||||++++ .+||++++|++ |++. ..|+..++++.
T Consensus 475 ~LD~~~~~~l~~~l~~~---~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 475 DLDVETLRALEEALLEF---P-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred CCCHHHHHHHHHHHHhC---C-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999986 1 3 899999999998 57999999986 7876 57888777665
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=326.33 Aligned_cols=187 Identities=30% Similarity=0.514 Sum_probs=170.5
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------------ceEEEecCCCCcccccCH
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------------PKSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------------~~~~v~q~~~~~~~~~tv 117 (263)
=+++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|.+++ ++|||||+..+++.+ ||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~-tV 93 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY-TV 93 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce-EE
Confidence 378999988789999999999999999999999999999999864 589999999877766 99
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 024738 118 EADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197 (263)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l 197 (263)
+.|+.|+.... .....+++.+.+|++++++++|..|||||||||+|+|||+.+|++||||||.++||...+.++
T Consensus 94 rgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei 167 (352)
T COG4148 94 RGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI 167 (352)
T ss_pred ecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence 99999986432 234567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+-.|.++.++- .+.|++|||.++++ ..||+|++|++|++.+.|+.++++..
T Consensus 168 lpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 168 LPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999998754 58999999999997 68999999999999999999999874
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=322.74 Aligned_cols=189 Identities=28% Similarity=0.395 Sum_probs=157.2
Q ss_pred cceeceeeEEe-----CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-ceEEEecCCCCcccccCHHHHHHhhc
Q 024738 52 PILRDCSFSVP-----SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-PKSFVFQNPDHQVVMPTVEADVAFGL 125 (263)
Q Consensus 52 ~iL~~vsl~i~-----~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-~~~~v~q~~~~~~~~~tv~~~~~~~~ 125 (263)
..+++++|++. +||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++...+ ..|+.+++.+..
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~-~~tv~e~l~~~~ 86 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADY-EGTVRDLLSSIT 86 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCC-CCCHHHHHHHHh
Confidence 36677777776 7999999999999999999999999999999999988 7999999875333 349999986543
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 126 GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
.... . ......++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.|++++
T Consensus 87 ~~~~-~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 162 (246)
T cd03237 87 KDFY-T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162 (246)
T ss_pred hhcc-c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 2111 1 11235678899999988999999999999999999999999999999999999999999999999999986
Q ss_pred hcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE--EecChhhH
Q 024738 206 GDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV--MQADGVSI 246 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~--~~g~~~~~ 246 (263)
++ .++|||+||||++++. +||++++|+++..+ ..+++.++
T Consensus 163 ~~-~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 163 EN-NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred Hh-cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 53 3689999999999985 79999999765433 34555543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=356.64 Aligned_cols=199 Identities=28% Similarity=0.354 Sum_probs=173.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
.++|+++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++-.++|++|++..
T Consensus 338 ~~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~ 411 (590)
T PRK13409 338 ETLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKP 411 (590)
T ss_pred ceEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccC
Confidence 458999999999975 25999999999999999999999999999999999999999999988779999999754
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD 190 (263)
.. ..||.+|+.++.... .. ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 412 ~~-~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 412 DY-DGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485 (590)
T ss_pred CC-CCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 33 349999987653211 11 1245788999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 191 ~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
+.++..+.+.|++++++ .|.|||+||||++++ .+||++++|++ ++...|..
T Consensus 486 ~~~~~~l~~~l~~l~~~-~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 486 VEQRLAVAKAIRRIAEE-REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 99999999999998754 367999999999998 57999999965 77776653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=351.06 Aligned_cols=207 Identities=20% Similarity=0.317 Sum_probs=170.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++|++++|. ++|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++
T Consensus 248 ~~~i~~~~l~~~~~-------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 248 EVILEVRNLTSLRQ-------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred CcEEEEeCcccccC-------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 35899999999741 489999999999999999999999999999999999999999999964
Q ss_pred ---ceEEEecCCCC--cccccCHHHH-----HHhhccCCCC-ChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHH
Q 024738 100 ---PKSFVFQNPDH--QVVMPTVEAD-----VAFGLGNLNL-THDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ---~~~~v~q~~~~--~~~~~tv~~~-----~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 167 (263)
.++|++|++.. .+...++.+| +.+.....+. .....++.+.++++.+++. +..++++.+|||||||||
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 400 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV 400 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH
Confidence 17899998531 1111255554 3322111121 2233456678899999995 568999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+||||++.+|++|||||||+|||+.++..+++.|.++.++ |.|||++|||++++ ++||++++|++|+++..+++.+.
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~--~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK--DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC--CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998643 67999999999998 58999999999999988876543
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=301.72 Aligned_cols=161 Identities=34% Similarity=0.525 Sum_probs=133.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCccc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~ 113 (263)
|+++|++++|+++ ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.- +..
T Consensus 1 l~~~~l~~~~~~~-----~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~--~~~------- 66 (163)
T cd03216 1 LELRGITKRFGGV-----KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE--VSF------- 66 (163)
T ss_pred CEEEEEEEEECCe-----EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE--CCc-------
Confidence 5789999999753 59999999999999999999999999999999999999999999987631 000
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESD 193 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~ 193 (263)
. +..+... ..+++ +.+||+||+||++||||++.+|++|||||||++||+.+
T Consensus 67 ~-~~~~~~~---------------------~~i~~-------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 67 A-SPRDARR---------------------AGIAM-------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred C-CHHHHHh---------------------cCeEE-------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 0 1111000 00000 00199999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEE
Q 024738 194 QFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVM 239 (263)
Q Consensus 194 ~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~ 239 (263)
++.+.+.|+++.++ +.|+|++||+++++ +.||++++|++|++++
T Consensus 118 ~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 118 VERLFKVIRRLRAQ--GVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999998643 67999999999987 5799999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=313.80 Aligned_cols=187 Identities=30% Similarity=0.437 Sum_probs=153.7
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------------
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------------- 99 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------------- 99 (263)
.+.|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 2 ~~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (218)
T cd03290 2 QVTNGYFSWGSG----LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRN 77 (218)
T ss_pred eeeeeEEecCCC----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhh
Confidence 578999999753 3699999999999999999999999999999999999999999998843
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqR 166 (263)
.++|++|++..+ ..|+.+|+.++.. .... ...++++.+++.+ .+++++.+|||||+||
T Consensus 78 ~~~i~~~~q~~~~~--~~t~~~nl~~~~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 78 RYSVAYAAQKPWLL--NATVEENITFGSP---FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred cceEEEEcCCCccc--cccHHHHHhhcCc---CCHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 378999988532 3499999977531 1111 1233444455432 2456789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIE--AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~--~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
++|||||+.+|++|||||||++||+.++..+++ +++.+. + .+.|+|++||+.+.+..||++++|++|.
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~-~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-D-DKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-c-CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999999999999998 555553 2 3689999999999987899999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=333.14 Aligned_cols=179 Identities=37% Similarity=0.504 Sum_probs=158.6
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 69 LLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 69 l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
|+||||||||||+|+|+|+++|++|+|.+++ .++|+||++..+.. .|+.+|+.++....+....+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~-~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPH-MTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCC-CcHHHHHHHHHhhcCCCHHHHHH
Confidence 6899999999999999999999999999965 48999999764333 39999999875433444455566
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivt 217 (263)
++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.++ .|.|+|+||
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~-~g~tiiivT 158 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ-LGITFVFVT 158 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 7889999999999999999999999999999999999999999999999999999999999999998653 368999999
Q ss_pred cCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 218 HRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 218 H~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||++++ ..||++++|++|+++..|+++++.+.
T Consensus 159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999997 57999999999999999999998764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=355.91 Aligned_cols=212 Identities=27% Similarity=0.360 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++|++++|++.. +..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 3 ALLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred cEEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 4899999999996421 113599999999999999999999999999999999999999999999853
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|++|++..+.. .|+.+|+.+.....+....+.++++.++++.+|+.+..++++.+||+||+||++|||||+
T Consensus 82 ~~~~~~i~~v~q~~~l~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~ 160 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSH-LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160 (648)
T ss_pred HHHhccEEEEeCCcccCCC-CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 37999999853332 389999987543333344455667889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
.+|++|||||||+|||+.+++.+.++|+++.+ .+.|+|++||+++.++.||++++|++|++++.|++++..
T Consensus 161 ~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~--~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQLRD--RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999864 368999999999988889999999999999999998764
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=311.05 Aligned_cols=203 Identities=29% Similarity=0.392 Sum_probs=183.8
Q ss_pred cccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCC
Q 024738 50 LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129 (263)
Q Consensus 50 ~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~ 129 (263)
...+|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++++++++..-..-+....|.++|+.+.....+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 35799999999999999999999999999999999999999999999999988766543322222399999998777778
Q ss_pred CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 024738 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~ 209 (263)
++.++++++++++.+.-+|.++.++|++.+|.||+-|+++|.|...+|++||+||-.+..|+.-+++..+.+.++.++
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-- 196 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-- 196 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhhh
Q 024738 210 EVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSRQ 254 (263)
Q Consensus 210 ~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 254 (263)
+.|||+||||++.+ ++||++++|++|++...|+++++...+....
T Consensus 197 ~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 197 NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDL 242 (249)
T ss_pred CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHhh
Confidence 47999999999998 5899999999999999999999988655443
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=302.84 Aligned_cols=158 Identities=37% Similarity=0.610 Sum_probs=139.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++|++++|+++. .++++|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++++ .
T Consensus 1 l~~~~l~~~~~~~~---~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (171)
T cd03228 1 IEFKNVSFSYPGRP---KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN 77 (171)
T ss_pred CEEEEEEEEcCCCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhh
Confidence 47899999997631 2589999999999999999999999999999999999999999999865 3
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|++|++.. +..|+.+|+ ||+|||||++|||||+.+|++|
T Consensus 78 i~~~~~~~~~--~~~t~~e~l-------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 78 IAYVPQDPFL--FSGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEEEcCCchh--ccchHHHHh-------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 6788887642 223666664 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
||||||+|||+.++..+.+.|+++. + ++|||++||+++++..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~-~--~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA-K--GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc-C--CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999984 2 479999999999986699999999884
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=313.04 Aligned_cols=208 Identities=30% Similarity=0.438 Sum_probs=174.8
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------- 99 (263)
..+.|+++|++++|+++ ++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.+
T Consensus 28 ~~~li~l~~v~v~r~gk-----~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~ 102 (257)
T COG1119 28 NEPLIELKNVSVRRNGK-----KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIF 102 (257)
T ss_pred CcceEEecceEEEECCE-----eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchH
Confidence 34689999999999875 699999999999999999999999999999999999999999998743
Q ss_pred ----ceEEEecCCCCcc-cccCHHHHHHhhc----cCCC-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQV-VMPTVEADVAFGL----GNLN-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ----~~~~v~q~~~~~~-~~~tv~~~~~~~~----~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
+||+|.-.-...+ ...++++-+.-++ ..+. ...++..+++..+++.+|+.+..+++..+||-||||||.|
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLi 182 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLI 182 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHH
Confidence 4677764322111 1125666544331 1121 2234556788899999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
||||+.+|++|||||||+|||..+++.+.+.|.+++....+.++|+|||+.+++ ...++++.+++|+++..|.
T Consensus 183 aRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999998765678999999999998 5789999999999998874
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=312.91 Aligned_cols=188 Identities=21% Similarity=0.177 Sum_probs=155.8
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-EcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|. +++....+.+.+..+.. .|+.+|+.+....++..
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~-ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPG-LTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCc-CcHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999999999999999997 76643334444432222 39999998765433443
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ 211 (263)
.++.. ..+.+.++++...++++.+||+|||||++|||||+.+|+++||||||+++|+.++..+.+.+.+..+ +.
T Consensus 81 ~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~ 154 (213)
T PRK15177 81 GDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QK 154 (213)
T ss_pred HHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CC
Confidence 33322 2344567888888999999999999999999999999999999999999999999999998866443 24
Q ss_pred EEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 212 TALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 212 tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|+|++||+++++ .+||++++|++|++++.++.++..
T Consensus 155 ~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 155 GLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred cEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 799999999998 589999999999999999987764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=357.83 Aligned_cols=195 Identities=24% Similarity=0.358 Sum_probs=168.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEEcC---------ceEEEecCCCCcccccCHHH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT--NGHVYVKR---------PKSFVFQNPDHQVVMPTVEA 119 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~--~G~I~~~~---------~~~~v~q~~~~~~~~~tv~~ 119 (263)
+++|+|+||++++||++||+||||||||||||+|+|+.+|+ +|+|.+++ +++|++|++..... .||+|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~-lTV~E 159 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPH-LTVRE 159 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCc-CCHHH
Confidence 46999999999999999999999999999999999999885 89999976 37999999764433 39999
Q ss_pred HHHhhccCC---CCChHHHHHHHHHHHHHcCCCccc-----CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 120 DVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYL-----QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 120 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
|+.+..... ..+.++..++++++++.+||.+.. ++.+.+||||||||++|||+|+.+|++|||||||+|||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 998864321 223445556788999999998755 456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
.++..+.+.|+++++ +|+|||++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 240 ~~~~~l~~~L~~l~~--~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 240 TAAYRLVLTLGSLAQ--KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999875 36899999999984 5 6899999999999999999988764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=354.84 Aligned_cols=201 Identities=25% Similarity=0.336 Sum_probs=171.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++||+++|+++ .+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+ .+||++|++
T Consensus 310 ~~~l~~~~l~~~y~~~-----~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~ 384 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR-----IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQ 384 (638)
T ss_pred CceEEEEeeEEEeCCe-----eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcc
Confidence 4589999999999753 599999999999999999999999999999999999999999999963 589999975
Q ss_pred CCccc-ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 109 DHQVV-MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 109 ~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
..... ..++.+++... ........+.++++.+++. ...++++.+|||||||||+|||+|+.+|++|||||||
T Consensus 385 ~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt 458 (638)
T PRK10636 385 LEFLRADESPLQHLARL------APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT 458 (638)
T ss_pred hhhCCccchHHHHHHHh------CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 22111 12566654311 1122245678899999996 4789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEE-EecChhhHH
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV-MQADGVSIL 247 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
++||+.++..+.+.|.++ .| |||+||||++++ .+||++++|++|+++ +.|+.+++.
T Consensus 459 ~~LD~~~~~~l~~~L~~~----~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 459 NHLDLDMRQALTEALIDF----EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCHHHHHHHHHHHHHc----CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999986 24 999999999998 579999999999997 788887763
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=381.22 Aligned_cols=202 Identities=20% Similarity=0.308 Sum_probs=173.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|.... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|
T Consensus 1237 ~I~f~nVsf~Y~~~~---~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL---PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred cEEEEEEEEEeCCCC---CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 699999999996431 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
++++|||+|. .+..|+++|+..+. ..+.+ .+.++++..++ +.........||||||||++
T Consensus 1314 ~IsiVpQdp~--LF~GTIreNLd~~~---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1314 VLGIIPQAPV--LFSGTVRFNLDPFN---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred ccEEECCCCc--cccccHHHHhCcCC---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 4899999985 34569999997642 22333 34445555444 33344455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||..+.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++++
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~---~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF---KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC---CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999874 3589999999999999999999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 1462 ~ 1462 (1622)
T PLN03130 1462 N 1462 (1622)
T ss_pred C
Confidence 4
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=380.27 Aligned_cols=202 Identities=21% Similarity=0.300 Sum_probs=173.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|
T Consensus 1234 ~I~f~nVsf~Y~~~~---~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL---PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred cEEEEEEEEEECCCC---CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 599999999996421 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
++++|||+|.. +..|+++|+.++. ..+.++ +.++++..++ +.........||||||||++
T Consensus 1311 ~i~iVpQdp~L--F~gTIr~NL~~~~---~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1311 VLSIIPQSPVL--FSGTVRFNIDPFS---EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred hcEEECCCCee--eCccHHHHcCCCC---CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 48999999853 4569999997642 233333 4445555444 33444556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+++.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++++
T Consensus 1382 LARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~---~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1382 LARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF---KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 3589999999999998899999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 1459 ~ 1459 (1495)
T PLN03232 1459 R 1459 (1495)
T ss_pred C
Confidence 5
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=378.80 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=175.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC----------------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP---------------------- 90 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---------------------- 90 (263)
.|+++||+|+|+++. ..++|+|+||+|++|+++||+||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~--~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP--NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCCC--CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 599999999997531 13699999999999999999999999999999999999998
Q ss_pred --------------------------------CceEEEEcC-------------ceEEEecCCCCcccccCHHHHHHhhc
Q 024738 91 --------------------------------TNGHVYVKR-------------PKSFVFQNPDHQVVMPTVEADVAFGL 125 (263)
Q Consensus 91 --------------------------------~~G~I~~~~-------------~~~~v~q~~~~~~~~~tv~~~~~~~~ 125 (263)
++|+|++++ .++||+|+|. +|..|++||+.++.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--LFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--cccccHHHHHhcCC
Confidence 699999975 4899999985 34569999999974
Q ss_pred cCCCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 024738 126 GNLNLTHDEVRSKVAKALDAVG-----------MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194 (263)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~ 194 (263)
. ..+.++ +.++++..+ ++.........||||||||++|||||+++|++||||||||+||+.+.
T Consensus 1321 ~--~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 E--DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred C--CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 3 233333 334444433 34444556678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC----CEEE-EecChhhHHhhhhhhhh
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED----GKIV-MQADGVSILNFIKSRQS 255 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~~~~~~~~~ 255 (263)
+.+.+.|.++.. .+++|+|+|||++..++.||+|++|++ |+++ +.|+++++++...+.+.
T Consensus 1395 ~~I~~~L~~~~~-~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~ 1459 (1466)
T PTZ00265 1395 KLIEKTIVDIKD-KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYK 1459 (1466)
T ss_pred HHHHHHHHHHhc-cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHH
Confidence 999999998742 135799999999999999999999999 8955 89999999863233333
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=352.89 Aligned_cols=203 Identities=27% Similarity=0.322 Sum_probs=165.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--eEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--KSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--~~~v~q~~~~ 110 (263)
||+++||+++|+++ ++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.+++. ++|++|++..
T Consensus 1 ~i~i~nls~~~g~~-----~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~ 75 (638)
T PRK10636 1 MIVFSSLQIRRGVR-----VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75 (638)
T ss_pred CEEEEEEEEEeCCc-----eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC
Confidence 58999999999864 5999999999999999999999999999999999999999999999764 7899996422
Q ss_pred cccccCHHHHHHhhc-----------------------cCC----CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChH
Q 024738 111 QVVMPTVEADVAFGL-----------------------GNL----NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGG 162 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~-----------------------~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 162 (263)
. ..++.+++.-.. ... .....+...++.++++.+|+. ...++++.+||||
T Consensus 76 ~--~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 76 L--PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred C--CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence 1 123333221000 000 000112345678899999997 5789999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEE-Ee
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV-MQ 240 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~-~~ 240 (263)
|||||+|||||+.+|++|||||||++||+.++.++.+.|+++ +.|||+||||++++ .+||++++|++|++. +.
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-----~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~ 228 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-----QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYT 228 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999875 24999999999998 579999999999996 46
Q ss_pred cChhhHH
Q 024738 241 ADGVSIL 247 (263)
Q Consensus 241 g~~~~~~ 247 (263)
|+.....
T Consensus 229 g~~~~~~ 235 (638)
T PRK10636 229 GNYSSFE 235 (638)
T ss_pred CCHHHHH
Confidence 7666554
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=361.35 Aligned_cols=208 Identities=32% Similarity=0.469 Sum_probs=180.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+.+. ..+||+|+||++++|+.+||||||||||||.+.+|-.++.|++|.|.+++
T Consensus 987 ~I~~~~V~F~YPsRP--~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP--DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred EEEEeeeEeeCCCCC--CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHH
Confidence 599999999999753 46899999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH-HHHc------CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA-LDAV------GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~------~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++.|.|+|.+ |..|++||+.+|.. ..+.+++.+.++.+ +..| |++.....+..+||||||||+|||||
T Consensus 1065 ~i~lVsQEP~L--F~~TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1065 QIGLVSQEPVL--FNGTIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred hcceeccCchh--hcccHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 58999999963 45699999999822 24555554433221 1111 55556667788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++++|++|||||.||+||.++.+.+.+.|.+.. .|+|+|+|.|++..++.||.|.|+++|+|++.|+++++++.
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~---~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAM---EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh---cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhC
Confidence 999999999999999999999999999999874 36899999999999999999999999999999999999983
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=351.22 Aligned_cols=204 Identities=27% Similarity=0.368 Sum_probs=171.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
..+|+++||+++|+++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.. .++|++|++
T Consensus 317 ~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~ 391 (635)
T PRK11147 317 KIVFEMENVNYQIDGK-----QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR 391 (635)
T ss_pred CceEEEeeeEEEECCe-----EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc
Confidence 4589999999999753 599999999999999999999999999999999999999999999954 489999975
Q ss_pred CCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 109 DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
.......|+.+|+.++....... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred cccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 32222239999987753211111 1134577889999996 56889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe-CCEEEE-ecChhhH
Q 024738 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME-DGKIVM-QADGVSI 246 (263)
Q Consensus 188 ~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~-~G~i~~-~g~~~~~ 246 (263)
+||+.++..+.+.|+++ . .|||+||||.+++ .+||++++|+ +|++.. .|+-.+.
T Consensus 470 ~LD~~~~~~l~~~l~~~----~-~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 470 DLDVETLELLEELLDSY----Q-GTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCHHHHHHHHHHHHhC----C-CeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999875 2 3999999999998 5899999998 899876 4555554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=323.68 Aligned_cols=223 Identities=27% Similarity=0.399 Sum_probs=191.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CceEEEEcC------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-----TNGHVYVKR------ 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----~~G~I~~~~------ 99 (263)
.+.|+++|++..|.... ....++++|||+|++||.+||+|+||||||-..+.|+||++- -+|+|.|+|
T Consensus 4 ~~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CcceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 45899999999997532 346799999999999999999999999999999999999854 368999864
Q ss_pred -----------ceEEEecCCCCcccc-cCHHHHHHhhcc-CCCCChHHHHHHHHHHHHHcCCC---cccCCCCCCCChHH
Q 024738 100 -----------PKSFVFQNPDHQVVM-PTVEADVAFGLG-NLNLTHDEVRSKVAKALDAVGMS---NYLQRPVQTLSGGQ 163 (263)
Q Consensus 100 -----------~~~~v~q~~~~~~~~-~tv~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgGq 163 (263)
+|+++||+|-..... -|+...+...+. ..+.+.++.++++.++|+.+|+. ..++.+|++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 589999998533321 177776665543 34667788889999999999996 36789999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
||||.||+||+++|++||.||||++||...+.+++++|+++.++ .|+.++++|||+..++ +||||+||.+|++++.|.
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~ 241 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCc
Confidence 99999999999999999999999999999999999999999765 5899999999999995 799999999999999999
Q ss_pred hhhHHhhhhhhhh
Q 024738 243 GVSILNFIKSRQS 255 (263)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (263)
.++++....+-++
T Consensus 242 t~~lF~~PqHpYT 254 (534)
T COG4172 242 TETLFAAPQHPYT 254 (534)
T ss_pred HHHHhhCCCChHH
Confidence 9999986444333
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=349.52 Aligned_cols=203 Identities=25% Similarity=0.327 Sum_probs=165.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--eEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--KSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--~~~v~q~~~~ 110 (263)
+|+++||+++|+++ ++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.+++. +++++|.+..
T Consensus 3 ~l~i~~ls~~~~~~-----~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~ 77 (635)
T PRK11147 3 LISIHGAWLSFSDA-----PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77 (635)
T ss_pred EEEEeeEEEEeCCc-----eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC
Confidence 79999999999763 5999999999999999999999999999999999999999999999764 5788886532
Q ss_pred cccccCHHHHHHhhc-----------------cC-----------------CCCChHHHHHHHHHHHHHcCCCcccCCCC
Q 024738 111 QVVMPTVEADVAFGL-----------------GN-----------------LNLTHDEVRSKVAKALDAVGMSNYLQRPV 156 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~-----------------~~-----------------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 156 (263)
. ...++.+++..+. .. ......+...++.++++.+|+. .++++
T Consensus 78 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~ 154 (635)
T PRK11147 78 N-VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAAL 154 (635)
T ss_pred C-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCch
Confidence 1 1124444321100 00 0000112345678899999997 38899
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCC
Q 024738 157 QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G 235 (263)
.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++. .|||+||||.+++ ..||++++|++|
T Consensus 155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-----~tvlivsHd~~~l~~~~d~i~~L~~G 229 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-----GSIIFISHDRSFIRNMATRIVDLDRG 229 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-----CEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 9999999999999999999999999999999999999999999998861 3999999999998 579999999999
Q ss_pred EEEE-ecChhhHHh
Q 024738 236 KIVM-QADGVSILN 248 (263)
Q Consensus 236 ~i~~-~g~~~~~~~ 248 (263)
+++. .|+..++..
T Consensus 230 ~i~~~~g~~~~~~~ 243 (635)
T PRK11147 230 KLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEecCCHHHHHH
Confidence 9974 577766544
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=345.42 Aligned_cols=193 Identities=27% Similarity=0.341 Sum_probs=163.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++|+|+++ .++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 322 ~i~~~~v~f~y~~~----~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 322 TLELRNVTFAYQDN----GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred eEEEEEEEEEeCCC----CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhh
Confidence 69999999999743 2599999999999999999999999999999999999999999999864
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCC-----CCCCChHHHHHHHHHHHHh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRP-----VQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~ 174 (263)
+++|++|++. .+..|+.+| + . ...++.+.++++.+++....+.. ...||||||||++||||++
T Consensus 398 ~i~~v~q~~~--lf~~ti~~n---~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~ 465 (547)
T PRK10522 398 LFSAVFTDFH--LFDQLLGPE---G---K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALA 465 (547)
T ss_pred heEEEecChh--HHHHhhccc---c---C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHh
Confidence 4899999874 334477766 1 1 12234567788888887654322 4589999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
++|++|||||||++||+.+++.+.+.+.+..+. .++|+|++||+++.++.||++++|++|++++...
T Consensus 466 ~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 466 EERDILLLDEWAADQDPHFRREFYQVLLPLLQE-MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEEechHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999998765432 2579999999998888999999999999997743
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=344.17 Aligned_cols=173 Identities=34% Similarity=0.542 Sum_probs=146.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
.|+++||+|+|+++ .++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 334 ~I~~~~vsf~Y~~~----~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 334 TLELRDLSFGYPGS----PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred eEEEEEEEEecCCC----CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhh
Confidence 59999999999753 2599999999999999999999999999999999999999999999987 6
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~l 169 (263)
++||+|+|. .+..|+++|+.++.. ..+. +++.++++..++.++ .......||||||||++|
T Consensus 410 i~~V~Q~~~--lF~~TI~eNI~~g~~--~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 410 ISVFAQDAH--LFDTTVRDNLRLGRP--DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred eEEEccCcc--cccccHHHHHhccCC--CCCH----HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 899999985 345699999998632 2233 334455565555433 333456899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
||||+++|++||||||||+||+.+.+.+.+.+.++. +++|+|+|||++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~---~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL---SGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEecCC
Confidence 999999999999999999999999999999999863 357999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=343.83 Aligned_cols=186 Identities=35% Similarity=0.537 Sum_probs=157.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. .++|+|+||+|++|+.++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 320 ~i~~~~v~f~y~~~~---~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR---APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred eEEEEEEEEECCCCC---cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 699999999997532 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|++. .+..|++||+.++... .+. +++.++++..++.+ ........||||||||++
T Consensus 397 ~i~~v~Q~~~--lf~~ti~~Ni~~~~~~--~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 397 QIAWVPQHPF--LFAGTIAENIRLARPD--ASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred heEEEcCCCc--ccCcCHHHHHhccCCC--CCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 4899999985 3445999999886322 222 23444555555433 344456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
|||||+++|+++|||||||+||+.+.+.+.+.+.++. +++|+|++||+++.++.||+|++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~---~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA---QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999999874 357999999999999899999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=344.39 Aligned_cols=197 Identities=23% Similarity=0.308 Sum_probs=163.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++||+|+|+++.....++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 36999999999975311113599999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCC------CCCChHHHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV------QTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGqkqRv~lAra 172 (263)
.++|++|++. .+..|+++|.. ....++++.++++.+++.+..++.+ ..||||||||++||||
T Consensus 416 ~~i~~v~q~~~--lf~~ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRa 484 (555)
T TIGR01194 416 DLFSAIFADFH--LFDDLIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICA 484 (555)
T ss_pred hhCcEEccChh--hhhhhhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHH
Confidence 3789999874 33447777731 1123455778899999987654433 5799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVK-NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~-~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
++.+|++|||||||++||+.+++.+.+.+. .+.. .++|+|++||+++.++.||+|++|++|++++.-
T Consensus 485 ll~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~--~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 485 WLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR--QGKTIIIISHDDQYFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999988664 3422 357999999999988899999999999998653
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=313.03 Aligned_cols=198 Identities=29% Similarity=0.430 Sum_probs=167.6
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc------------eEEEe-cCCCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------KSFVF-QNPDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~------------~~~v~-q~~~~~~~~~tv 117 (263)
.++++|+||+|++|++++++|||||||||+||+++|++.|++|.|.++|. +++++ |........ .+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl-p~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL-PA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec-hh
Confidence 46899999999999999999999999999999999999999999999763 33333 222221222 23
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 024738 118 EADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197 (263)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l 197 (263)
.+.+...-..+..+.++..++...+.+.++|++.++.+++.||-|||.|+.||.||+++|++|+|||||-|||..++..+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 33332222234566778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
.+.++++..+ .+.||+++||+++.+ ..||||+.|+.|+++++|+.+++.+..
T Consensus 196 r~Flke~n~~-~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 196 REFLKEYNEE-RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHHh-hCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999998765 468999999999997 589999999999999999998887653
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=372.46 Aligned_cols=198 Identities=29% Similarity=0.525 Sum_probs=164.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc-C------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-R------------ 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~-~------------ 99 (263)
.|+++||+|+|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++ +
T Consensus 382 ~I~~~nVsf~Y~~~~--~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK--DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCC--CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHH
Confidence 699999999997531 1369999999999999999999999999999999999999999999994 2
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCC-C---------C--------------------------------------
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNL-N---------L-------------------------------------- 130 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~-~---------~-------------------------------------- 130 (263)
+++||+|++.. +..|+++|+.++.... . .
T Consensus 460 ~~Ig~V~Q~~~L--F~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 460 SKIGVVSQDPLL--FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HhccEecccccc--hhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 37999999864 3359999999863110 0 0
Q ss_pred ---ChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 024738 131 ---THDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196 (263)
Q Consensus 131 ---~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~ 196 (263)
.....++.+.++++.+++.++ ....+.+||||||||++|||||+++|++||||||||+||+.++..
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 000112456667777766543 356678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCC
Q 024738 197 VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDG 235 (263)
Q Consensus 197 l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G 235 (263)
+.+.|.++.++ +|+|+|+|||+++.++.||+|++|++|
T Consensus 618 i~~~L~~~~~~-~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGN-ENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhc-CCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 99999998542 368999999999999899999999986
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=295.37 Aligned_cols=195 Identities=33% Similarity=0.535 Sum_probs=168.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++++.+.-++ .++|+++||++.+||+++|+||||||||||+|+++-|+.|++|+++|.|
T Consensus 3 lle~kq~~y~a~~-----a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq 77 (223)
T COG4619 3 LLELKQVGYLAGD-----AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77 (223)
T ss_pred chHHHHHHhhcCC-----CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHH
Confidence 3556666544433 3699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
+++|+.|.|.+ +..||++|+.|+...++... .+.++.++++++++.+ .+++.+.+||||||||++|+|-|..-|+
T Consensus 78 ~VsY~~Q~paL--fg~tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ 153 (223)
T COG4619 78 QVSYCAQTPAL--FGDTVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPK 153 (223)
T ss_pred HHHHHHcCccc--cccchhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCc
Confidence 47999999864 34599999998864433222 2456778999999974 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-hhcCCEEEEEeCCEE
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKI 237 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~~~~d~v~~l~~G~i 237 (263)
+||||||||+||+.+++.+.++|.++.++ +...+++||||.+. ++++|+++-+..|.+
T Consensus 154 ILLLDE~TsALD~~nkr~ie~mi~~~v~~-q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 154 ILLLDEITSALDESNKRNIEEMIHRYVRE-QNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred eEEecCchhhcChhhHHHHHHHHHHHhhh-hceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999999999999999999999864 46899999999999 589999999999876
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=372.02 Aligned_cols=202 Identities=22% Similarity=0.279 Sum_probs=173.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|++.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|
T Consensus 1308 ~I~f~nVsf~Y~~~~---~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL---PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred eEEEEEEEEEeCCCC---CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 599999999997532 3599999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~ 168 (263)
.+++|||+|. +|..|+++|+..+ . ..+. +++.++++.+++.+. .......||||||||++
T Consensus 1385 ~I~iVpQdp~--LF~gTIreNIdp~-~--~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1385 QFSMIPQDPV--LFDGTVRQNVDPF-L--EASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred cceEECCCCc--cccccHHHHhCcc-c--CCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 4899999985 3456999999642 1 2333 345566666666543 23344689999999999
Q ss_pred HHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEA-CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~-p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+++ |++||||||||+||+.+.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|++++++
T Consensus 1456 LARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~---~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1456 MARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF---SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC---CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999995 89999999999999999999999999864 257999999999999999999999999999999999998
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 1533 ~~ 1534 (1560)
T PTZ00243 1533 MN 1534 (1560)
T ss_pred hC
Confidence 64
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=346.52 Aligned_cols=200 Identities=25% Similarity=0.367 Sum_probs=166.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++||+++|+++ .++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ .++|++|++
T Consensus 506 ~~~L~~~~ls~~y~~~----~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~ 581 (718)
T PLN03073 506 PPIISFSDASFGYPGG----PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHH 581 (718)
T ss_pred CceEEEEeeEEEeCCC----CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccc
Confidence 3589999999999642 2589999999999999999999999999999999999999999999865 589999986
Q ss_pred CCcccccCHHHHHHhhc-c-CCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 109 DHQVVMPTVEADVAFGL-G-NLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
.. .. ++.++..+.. . ..... .+++.++++.+++. ...++++.+|||||||||+|||||+.+|++||||||
T Consensus 582 ~~--~l-~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP 654 (718)
T PLN03073 582 VD--GL-DLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP 654 (718)
T ss_pred cc--cC-CcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 21 11 3334432211 1 11111 34577899999998 467899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE-EecChhhH
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV-MQADGVSI 246 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~ 246 (263)
|++||+.++..+.+.|.++ ++ |||+||||++++. +||++++|++|+++ +.|+..+.
T Consensus 655 T~~LD~~s~~~l~~~L~~~----~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 655 SNHLDLDAVEALIQGLVLF----QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCHHHHHHHHHHHHHc----CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999998888764 24 9999999999985 79999999999998 66766554
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=370.17 Aligned_cols=202 Identities=21% Similarity=0.275 Sum_probs=173.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+.+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|
T Consensus 1284 ~I~f~nVsf~Y~~~~---~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL---DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred cEEEEEEEEEeCCCC---cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 699999999997532 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
+++++||+|.. +..|+++|+... . ..+.++ +.++++.+++ +.........||||||||++
T Consensus 1361 ~i~iVpQdp~L--F~gTIr~NLdp~-~--~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1361 KITIIPQDPVL--FSGSLRMNLDPF-S--QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred cCeEECCCCcc--cCccHHHHcCcc-c--CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 48999999853 446999999632 1 233333 3445555444 33344455789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+++...+.+.|++.. +++|+|+|+|+++.+..||+|++|++|+|++.|+++++++
T Consensus 1432 LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~---~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF---EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998864 3579999999999999999999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
+
T Consensus 1509 ~ 1509 (1522)
T TIGR00957 1509 Q 1509 (1522)
T ss_pred C
Confidence 5
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=285.56 Aligned_cols=141 Identities=40% Similarity=0.500 Sum_probs=130.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCCc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDHQ 111 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~~ 111 (263)
|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|++++ .++|++|
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~----- 70 (144)
T cd03221 1 IELENLSKTYGGK-----LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ----- 70 (144)
T ss_pred CEEEEEEEEECCc-----eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-----
Confidence 4789999999753 599999999999999999999999999999999999999999999986 4677776
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
||+||+||++|||||+.+|+++||||||++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCE
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGK 236 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~ 236 (263)
.++..+.+.|+++ +.|+|++||+++++ +.||++++|++||
T Consensus 104 ~~~~~l~~~l~~~-----~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKEY-----PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHc-----CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999876 25999999999998 5799999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=310.29 Aligned_cols=189 Identities=30% Similarity=0.377 Sum_probs=156.8
Q ss_pred EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----------EcC------
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----------VKR------ 99 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-----------~~~------ 99 (263)
.||+|+|+.+ ..+|+|+|+ +++|++++|+||||||||||||+|+|+++|++|+|. +++
T Consensus 4 ~~~~~~y~~~----~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~ 78 (255)
T cd03236 4 DEPVHRYGPN----SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY 78 (255)
T ss_pred cCcceeecCc----chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhh
Confidence 4889999753 258999995 999999999999999999999999999999999995 322
Q ss_pred ---------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 ---------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ---------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|++|.+.... .++.+++.... ......+.+.++++.+|+++..++.+.+||+|||||++||
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~--~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIP--KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hHHhhhcccceeeecchhccCc--hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 1467777654322 25566665432 1223345678899999999888999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEe
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ 240 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~ 240 (263)
|||+.+|+++||||||++||+.++..+.+.|+++.++ ++|||++||+++++. +||++++|+ |++.+.
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~--~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED--DNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 9999999999999999999999999999999998643 579999999999985 799999995 556543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=294.60 Aligned_cols=219 Identities=28% Similarity=0.403 Sum_probs=191.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
+.|+++||+++|++ +.+|+++||++.+||.-+|+|||||||||++.+|+|..+|+.|+|++.+
T Consensus 4 ~iL~~~~vsVsF~G-----F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~I 78 (249)
T COG4674 4 IILYLDGVSVSFGG-----FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI 78 (249)
T ss_pred ceEEEeceEEEEcc-----eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHH
Confidence 47999999999987 4699999999999999999999999999999999999999999999976
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCC--------CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLN--------LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
.||.-||.|..+... ||++|+.++..... ....+-+++++++|...||.+..++....||.||||++.
T Consensus 79 Ar~GIGRKFQ~PtVfe~l-tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLE 157 (249)
T COG4674 79 ARAGIGRKFQKPTVFENL-TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLE 157 (249)
T ss_pred HHhccCccccCCeehhhc-cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhh
Confidence 278889999755444 99999988754221 112233568999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHH
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|++.++.+|++|++|||++|+-.....+.-++|+.++. +.+|++|.|||++++ +|++|-||+.|.+..+|+.+++-
T Consensus 158 IGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~---~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 158 IGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG---KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred hheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc---CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 99999999999999999999999999999999999964 369999999999995 89999999999999999999987
Q ss_pred hhhhhhhhhhhhh
Q 024738 248 NFIKSRQSSYIER 260 (263)
Q Consensus 248 ~~~~~~~~~~~~~ 260 (263)
++ +.....|+++
T Consensus 235 ~d-p~ViEvYLGr 246 (249)
T COG4674 235 ND-PKVIEVYLGR 246 (249)
T ss_pred cC-cceEeeeccc
Confidence 65 3445556654
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=287.47 Aligned_cols=217 Identities=28% Similarity=0.442 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEECCCc----cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------
Q 024738 32 VAIECSNLNYSITKKQ----RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~----~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------- 99 (263)
+.|+++|++|.|..+. ...+.+++.|||++++|+.+||+|.||||||||.|+|+|+++|++|+|.+++
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 3689999999885431 1124689999999999999999999999999999999999999999999975
Q ss_pred -----ceEEEecCCCCccccc-CHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMP-TVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~-tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAr 171 (263)
+|-++||+|+..+... .+.+-+..+++. ..+..+...+++.+-|+.+||- +..+-++.-||.||||||+|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 4789999997554321 333333444432 2455666677888999999985 7889999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+.+|+++|.||..++||...+.++.+++.++.. +.|.+.|+|+.++..++ ++|.|+||+.|++++.|++.++++.
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQe-k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~ 240 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHH-HhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcC
Confidence 99999999999999999999999999999999865 46899999999999997 6999999999999999999999875
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=290.80 Aligned_cols=155 Identities=31% Similarity=0.382 Sum_probs=136.3
Q ss_pred EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-ceEEEecCCCCccccc
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-PKSFVFQNPDHQVVMP 115 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-~~~~v~q~~~~~~~~~ 115 (263)
.||+++|+++ .+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.
T Consensus 4 ~~l~~~~~~~-----~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~------ 71 (177)
T cd03222 4 PDCVKRYGVF-----FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID------ 71 (177)
T ss_pred CCeEEEECCE-----EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC------
Confidence 5899999763 588884 99999999999999999999999999999999999999987 4788887542
Q ss_pred CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 024738 116 TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~ 195 (263)
||+|||||++|||||+.+|+++||||||++||+.++.
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEe--cChhhHH
Q 024738 196 GVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ--ADGVSIL 247 (263)
Q Consensus 196 ~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~--g~~~~~~ 247 (263)
.+.+.+.+++++ .+.|||++||+++++. .||++++|+++-.+.. |.|....
T Consensus 109 ~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 109 NAARAIRRLSEE-GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHHHHHHHHHc-CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999998653 2379999999999985 7999999998766544 6665443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=342.57 Aligned_cols=192 Identities=26% Similarity=0.403 Sum_probs=161.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
.+|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|++|++.
T Consensus 450 ~~i~~~nv~~~~~~~----~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~ 525 (659)
T TIGR00954 450 NGIKFENIPLVTPNG----DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY 525 (659)
T ss_pred CeEEEEeeEEECCCC----CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC
Confidence 379999999999642 2599999999999999999999999999999999999999999999853 6899999985
Q ss_pred CcccccCHHHHHHhhccCCCCC-hHHHHHHHHHHHHHcCCCcccCCCC---------CCCChHHHHHHHHHHHHhhCCCE
Q 024738 110 HQVVMPTVEADVAFGLGNLNLT-HDEVRSKVAKALDAVGMSNYLQRPV---------QTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~~~p~l 179 (263)
. +..|+++|+.++....... ....++++.++++.+++.+..+++. .+||||||||++|||||+++|++
T Consensus 526 l--~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i 603 (659)
T TIGR00954 526 M--TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF 603 (659)
T ss_pred C--CCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence 3 3349999998764211110 1112345678899999987666543 79999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
+||||||++||+.+++.+.+.+++. |.|+|++||+++.++.||++++|+.
T Consensus 604 llLDEpts~LD~~~~~~l~~~l~~~-----~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 604 AILDECTSAVSVDVEGYMYRLCREF-----GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999999888752 5799999999999999999999963
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=331.15 Aligned_cols=203 Identities=34% Similarity=0.452 Sum_probs=170.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~ 110 (263)
+|+++|++++|+++ ++|+++||+|.+|+.+||||+||||||||||+|+|...|++|+|.+.+ +++|+.|++..
T Consensus 3 ~i~~~~ls~~~g~~-----~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~ 77 (530)
T COG0488 3 MITLENLSLAYGDR-----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPL 77 (530)
T ss_pred eEEEeeeEEeeCCc-----eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCc
Confidence 79999999999764 699999999999999999999999999999999999999999999987 69999999864
Q ss_pred cccccCHHHHHHhhccCC-C-----------------------------CChHHHHHHHHHHHHHcCCCcccCCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNL-N-----------------------------LTHDEVRSKVAKALDAVGMSNYLQRPVQTLS 160 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~-~-----------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 160 (263)
... .||.+.+..+.... . +...+.+.++..++..+|+... ++++.+||
T Consensus 78 ~~~-~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 78 DPE-KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred CCC-ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 332 27877665442110 0 0001123566778888899877 99999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEE
Q 024738 161 GGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVM 239 (263)
Q Consensus 161 gGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~ 239 (263)
||||.||+||+||+.+|++||||||||+||..+..++.+.|.++ .| |+|+||||.+++. .|++|+.++.|++..
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~ 230 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELDRGKLTP 230 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEecCCceeE
Confidence 99999999999999999999999999999999999999999875 35 9999999999995 799999999999865
Q ss_pred e-cChhhHH
Q 024738 240 Q-ADGVSIL 247 (263)
Q Consensus 240 ~-g~~~~~~ 247 (263)
+ |.-+...
T Consensus 231 y~Gny~~~~ 239 (530)
T COG0488 231 YKGNYSSYL 239 (530)
T ss_pred ecCCHHHHH
Confidence 4 4444433
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=336.58 Aligned_cols=195 Identities=26% Similarity=0.362 Sum_probs=170.8
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcCc----------eEEEecCCCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKRP----------KSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~~----------~~~v~q~~~~~~~~~tv 117 (263)
+++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.+++. ++|++|++..... .||
T Consensus 38 ~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~-lTV 116 (617)
T TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT-LTV 116 (617)
T ss_pred cccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCcc-CcH
Confidence 57999999999999999999999999999999999999885 799999763 5999999864333 399
Q ss_pred HHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCC------CCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 024738 118 EADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQ------TLSGGQKQRVAIAGALAEACKVLLLDELTTF 188 (263)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqRv~lAral~~~p~llllDEPts~ 188 (263)
+||+.++.... ....++..++++++++.+||.+..+..++ .||||||||++|||+|+.+|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 99999875432 23445566788999999999988888776 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc-hh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-EL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 189 LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||+.++..+++.|++++++ |+|||+++|++. .+ +.||++++|++|++++.|+++++.+
T Consensus 197 LD~~~~~~l~~~L~~l~~~--g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQK--GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred hhHHHHHHHHHHHHHHHhC--CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999999999998753 689999999996 44 7899999999999999999988754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=358.89 Aligned_cols=209 Identities=27% Similarity=0.327 Sum_probs=179.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEEcC---------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK---PTNGHVYVKR--------- 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~~--------- 99 (263)
.+++++||++.|+.+. ..+++|+|||+++++|++++|+|||||||||||++|+|+.+ |++|+|.+++
T Consensus 758 ~~l~~~nl~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCC-CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 3689999999996321 12469999999999999999999999999999999999997 7899999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCC----CCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQ----TLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~LSgGqkqRv~lAra 172 (263)
.++|++|++.... ..||+||+.+..... ..+.++..++++++++.++|.+..++.++ .||||||||++||+|
T Consensus 837 ~i~yv~Q~~~~~~-~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLP-TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCC-CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 3799999875333 349999999864322 23444556778999999999988888887 799999999999999
Q ss_pred HhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeCC-EEEEecChh
Q 024738 173 LAEACK-VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMEDG-KIVMQADGV 244 (263)
Q Consensus 173 l~~~p~-llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~G-~i~~~g~~~ 244 (263)
|+.+|+ +|||||||+|||+.++..+++.|++++++ |+|||+++|+++. + +.+|++++|++| ++++.|++.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~--g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH--GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999997 99999999999999999999999998653 6899999999986 3 679999999997 999999874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=360.61 Aligned_cols=200 Identities=27% Similarity=0.320 Sum_probs=171.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+++|+... .++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+++
T Consensus 1217 ~I~f~nVs~~Y~~~~---~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG---RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred eEEEEEEEEEeCCCC---cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHh
Confidence 699999999997532 369999999999999999999999999999999999996 899999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL-----------QRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~ 168 (263)
+++|+||+|.. +..|+++|+.... ..+ ++++.++++.+++.+.. ......||||||||++
T Consensus 1293 ~is~IpQdp~L--F~GTIR~NLdp~~---~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~ 1363 (1490)
T TIGR01271 1293 AFGVIPQKVFI--FSGTFRKNLDPYE---QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC 1363 (1490)
T ss_pred ceEEEeCCCcc--CccCHHHHhCccc---CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHH
Confidence 48999999853 4569999996421 122 34455677777665433 2233579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|+|||||||||+||+.+...+.+.|++.. +++|||+|||+++.+..||+|++|++|+|++.|++.++++
T Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~---~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1364 LARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF---SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999999999999864 2589999999999998899999999999999999999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=361.54 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=170.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEEcCceEEEecCCCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-GHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-G~I~~~~~~~~v~q~~~~~ 111 (263)
.++++|++|+|+... ..++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+++.++|++|+|..
T Consensus 614 ~I~~~nvsf~y~~~~--~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~L- 690 (1622)
T PLN03130 614 AISIKNGYFSWDSKA--ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWI- 690 (1622)
T ss_pred ceEEEeeEEEccCCC--CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCcccc-
Confidence 699999999997421 1369999999999999999999999999999999999999999 999999999999999853
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
+..|++||+.|+.. .+. ++..++++.++|.+ ........||||||||++||||++.+|+++
T Consensus 691 -fngTIreNI~fg~~---~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~Il 762 (1622)
T PLN03130 691 -FNATVRDNILFGSP---FDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVY 762 (1622)
T ss_pred -CCCCHHHHHhCCCc---ccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 44599999998742 222 23344455444432 334456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIE-AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~-~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+||+...+.+.+ .+.... +++|+|+|||+++.++.||+|++|++|++++.|+.+++.+.
T Consensus 763 LLDEptSALD~~~~~~I~~~~l~~~l---~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 763 IFDDPLSALDAHVGRQVFDKCIKDEL---RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred EECCCccccCHHHHHHHHHHHhhHHh---cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 9999999999999888765 455443 25799999999999999999999999999999999988753
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=281.18 Aligned_cols=215 Identities=27% Similarity=0.388 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
|.+++.++++.|+.. .-.+||||++.|||+.+|+|+|||||||||+||++-+.|+.|+|.+.-
T Consensus 5 PLL~V~~lsk~Yg~~-----~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 5 PLLSVSGLSKLYGPG-----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred cceeehhhhhhhCCC-----cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 579999999999874 368999999999999999999999999999999999999999998842
Q ss_pred ----------ceEEEecCCCCccccc-CHHHHH-----HhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChH
Q 024738 100 ----------PKSFVFQNPDHQVVMP-TVEADV-----AFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGG 162 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~-tv~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 162 (263)
.-|||.|+|..-..+. +...|+ +.+...+ ..+++.+.+|++++.++ ...+..|..+|||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 2589999986433322 222232 2222222 24566788999999997 5678899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
|+||+.|||-|+..|+++++||||.|||...+..++++++.+..+ -+..++|||||+..+. .+||.++|++|++++.|
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~-l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh-cCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999999999999999999999999999999999999999875 4789999999999997 59999999999999999
Q ss_pred ChhhHHhhhhhhhhh
Q 024738 242 DGVSILNFIKSRQSS 256 (263)
Q Consensus 242 ~~~~~~~~~~~~~~~ 256 (263)
-++.++....+-++.
T Consensus 235 LTDrvLDDP~hPYTQ 249 (258)
T COG4107 235 LTDRVLDDPHHPYTQ 249 (258)
T ss_pred cccccccCCCCchHH
Confidence 998888764444443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=359.32 Aligned_cols=208 Identities=27% Similarity=0.366 Sum_probs=172.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
.++++|++++|++.. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.++|++|+|..
T Consensus 636 ~i~~~~~~~~~~~~~---~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l-- 710 (1522)
T TIGR00957 636 SITVHNATFTWARDL---PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI-- 710 (1522)
T ss_pred cEEEEEeEEEcCCCC---CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc--
Confidence 699999999997531 369999999999999999999999999999999999999999999999999999999853
Q ss_pred cccCHHHHHHhhccCCCCChHHHHHHHH--HHHHHcC-----CCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 113 VMPTVEADVAFGLGNLNLTHDEVRSKVA--KALDAVG-----MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 113 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~-----l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
+..|+++|+.++.. .+.+...+.++ ++.+.++ .+...+.++.+||||||||++||||++.+|+++|||||
T Consensus 711 ~~~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 711 QNDSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred cCCcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 34599999998642 22222222111 1122222 22345677899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|++||+...+.+.+.+.+.....+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 788 ~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 788 LSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred ccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 999999999999999865311113579999999999998899999999999999999988865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=284.35 Aligned_cols=156 Identities=28% Similarity=0.345 Sum_probs=129.7
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
+++|+|+||+|++|++++|+||||||||||||++. +++|+|.+.+....... .++.+ .
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~------------~~~~~------~ 65 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSR------------NKLIF------I 65 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccccc------------ccEEE------E
Confidence 46999999999999999999999999999999985 37899987643210000 00100 0
Q ss_pred ChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 024738 131 THDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEA--CKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~--p~llllDEPts~LD~~~~~~l~~~l~~l~~~ 207 (263)
. + .++++.+++.. .+++++.+||+|||||++|||||+.+ |+++||||||++||+.+++.+.+.|+++++
T Consensus 66 ~-q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~- 137 (176)
T cd03238 66 D-Q------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID- 137 (176)
T ss_pred h-H------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 0 0 35788999986 48899999999999999999999999 999999999999999999999999999854
Q ss_pred CCCcEEEEEccCcchhhcCCEEEEEeCCEE
Q 024738 208 SGEVTALWVTHRLEELEYADGAFYMEDGKI 237 (263)
Q Consensus 208 ~~~~tiiivtH~~~~~~~~d~v~~l~~G~i 237 (263)
.|.|||++||+++++..||++++|.+|+.
T Consensus 138 -~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 138 -LGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred -CCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 36899999999998888999999977554
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=287.86 Aligned_cols=211 Identities=32% Similarity=0.458 Sum_probs=177.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
|+++.|+.+.|.+.....+++|+++||+|++|+++.|+|.||||||||+++|+|-+.|++|+|.+++
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 5678899988876655567899999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccc-cCHHHHHHhhccC---CCCCh---HHHHHHHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVM-PTVEADVAFGLGN---LNLTH---DEVRSKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~-~tv~~~~~~~~~~---~~~~~---~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++-|||+|..-... .|+.||+.++... +++.. ...++...+.+..+ |+++.++.++.-|||||||-++|+
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 267899998533222 2999999886432 23322 22233444556665 567899999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
+|.++.|++|+|||-|++|||.....+++.-.++.++ .+.|.+||||+++.+ .+.+|.++|++|+|+.+-..+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~-~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE-HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHh-cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 9999999999999999999999999999999998875 468999999999996 899999999999999876543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=357.78 Aligned_cols=203 Identities=25% Similarity=0.361 Sum_probs=168.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEEcCceEEEecCCCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH-VYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~-I~~~~~~~~v~q~~~~~ 111 (263)
.++++|++|+|+.+. ..++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|. +.+++.++|++|+|..
T Consensus 614 ~I~~~~vsF~y~~~~--~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~L- 690 (1495)
T PLN03232 614 AISIKNGYFSWDSKT--SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWI- 690 (1495)
T ss_pred cEEEEeeEEEcCCCC--CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccc-
Confidence 599999999997521 136999999999999999999999999999999999999999975 4568899999999853
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
+..|++||+.++.. .+.+ +..++++.+++. .........||||||||++||||++.+|+++
T Consensus 691 -f~gTIreNI~fg~~---~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 762 (1495)
T PLN03232 691 -FNATVRENILFGSD---FESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY 762 (1495)
T ss_pred -ccccHHHHhhcCCc---cCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 44599999998742 2333 333444444443 2333445689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEA-VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~-l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+||+.+.+.+++. +.... +++|+|+|||+++.++.||+|++|++|++++.|+.+++.+.
T Consensus 763 LLDEptSaLD~~t~~~I~~~~l~~~l---~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 763 IFDDPLSALDAHVAHQVFDSCMKDEL---KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhh---cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 99999999999999888765 44432 35799999999999999999999999999999999988753
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=313.19 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=174.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|.++++++.-++.+ +++++++||++.+||.+||+||||||||||.|+|.|..+|++|.|++++
T Consensus 334 ~L~Ve~l~~~PPg~~---~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 334 ALSVERLTAAPPGQK---KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred eeeEeeeeecCCCCC---CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 799999998765532 5899999999999999999999999999999999999999999999964
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK-----VAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
++||+||+.. .|..|+.|||.-+-. ..+.+.+.+. +.+++-++ |.+.....-...||||||||++||||
T Consensus 411 hiGYLPQdVe--LF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 411 HIGYLPQDVE--LFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred ccCcCcccce--ecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence 6999999875 355699999964321 1223322221 22333333 44444555567999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|..+|.+++||||-|+||......+.+.|.+..+ +|.|+|+|||++..+..+|+|++|++|++...|+.++++.+
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~--rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA--RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH--cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999854 46899999999999999999999999999999999999875
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=280.77 Aligned_cols=214 Identities=26% Similarity=0.361 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEEcCc---------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTNGHVYVKRP--------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~~~--------- 100 (263)
.+|+++||+.+..++ +.+|++|||+|++||+++|+||||||||||.++|+|.- ++++|+|.+++.
T Consensus 2 ~~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 2 MMLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred ceeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhH
Confidence 379999999999763 25999999999999999999999999999999999975 779999999763
Q ss_pred -----eEEEecCCCCcccccCHHHHHHhhccCCCCC---hHHHHHHHHHHHHHcCCCc-ccCCCCC-CCChHHHHHHHHH
Q 024738 101 -----KSFVFQNPDHQVVMPTVEADVAFGLGNLNLT---HDEVRSKVAKALDAVGMSN-YLQRPVQ-TLSGGQKQRVAIA 170 (263)
Q Consensus 101 -----~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~-~~~~~~~-~LSgGqkqRv~lA 170 (263)
+...||.|...+.. ++.+.+..+.....-. ..+..+++.+.++.+++++ +++|.+. .+|||||+|..|+
T Consensus 78 RAr~GifLafQ~P~ei~GV-~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Eil 156 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGV-TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEIL 156 (251)
T ss_pred HHhcCCEEeecCCccCCCe-eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHH
Confidence 67889998644333 7777776654321111 2355678889999999985 7888885 7999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc--CCEEEEEeCCEEEEecChhhHHh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY--ADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~--~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
.+++.+|++.|||||-||||..+-+.+.+.+.+++.. |.+++++||....+.+ .|+|.+|.+|+|+.+|.+ ++..
T Consensus 157 Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~--~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE--GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC--CCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence 9999999999999999999999999999999999653 6899999999999975 599999999999999999 7776
Q ss_pred hhhhh
Q 024738 249 FIKSR 253 (263)
Q Consensus 249 ~~~~~ 253 (263)
..+..
T Consensus 234 ~le~~ 238 (251)
T COG0396 234 ELEEK 238 (251)
T ss_pred HHHHh
Confidence 54443
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=348.23 Aligned_cols=209 Identities=24% Similarity=0.316 Sum_probs=176.7
Q ss_pred eEEEEeEEEEECCCc--------cccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC---
Q 024738 33 AIECSNLNYSITKKQ--------RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR--- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~--------~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~--- 99 (263)
.+.++||++.+..+. .....+|+|+|+++++|++++|+||||||||||||+|+|..++ .+|+|.+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 699999999985321 0124699999999999999999999999999999999999763 789999875
Q ss_pred -------ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCC-----CCCChHHH
Q 024738 100 -------PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPV-----QTLSGGQK 164 (263)
Q Consensus 100 -------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqk 164 (263)
.+||++|++..... .||+|++.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~-lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQ-VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred ChHHhhhheEEEccccccCCC-CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 26999998754333 39999998864321 2234455567889999999998888876 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeC-CEEEEec
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMED-GKIVMQA 241 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~-G~i~~~g 241 (263)
|||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+++. + +.||++++|++ |++++.|
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~--g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 9999999999999999999999999999999999999998753 6899999999984 4 68999999996 8999999
Q ss_pred Chh
Q 024738 242 DGV 244 (263)
Q Consensus 242 ~~~ 244 (263)
++.
T Consensus 1104 ~~~ 1106 (1470)
T PLN03140 1104 PLG 1106 (1470)
T ss_pred Ccc
Confidence 863
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=331.20 Aligned_cols=201 Identities=24% Similarity=0.269 Sum_probs=154.5
Q ss_pred CCcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEEcCceEEEe
Q 024738 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL---KPTNGHVYVKRPKSFVF 105 (263)
Q Consensus 29 ~~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~---~p~~G~I~~~~~~~~v~ 105 (263)
+...+|+++|++++|+++ ++|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|. |+.
T Consensus 173 ~~~~~I~i~nls~~y~~~-----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~------~~~ 241 (718)
T PLN03073 173 PAIKDIHMENFSISVGGR-----DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL------HVE 241 (718)
T ss_pred CCceeEEEceEEEEeCCC-----EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE------EEe
Confidence 345589999999999753 5999999999999999999999999999999999964 46777764 444
Q ss_pred cCCCCcccccCHHHH---------------HHhhc-----------------cCCCCChH-------------------H
Q 024738 106 QNPDHQVVMPTVEAD---------------VAFGL-----------------GNLNLTHD-------------------E 134 (263)
Q Consensus 106 q~~~~~~~~~tv~~~---------------~~~~~-----------------~~~~~~~~-------------------~ 134 (263)
|+... ...++.+. +.+.. ...+.+.. .
T Consensus 242 Q~~~g--~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 319 (718)
T PLN03073 242 QEVVG--DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYT 319 (718)
T ss_pred ccCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcch
Confidence 43211 00121110 00000 00011111 2
Q ss_pred HHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 135 VRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 135 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
..+++.+++..+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++ +.||
T Consensus 320 ~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~~tv 394 (718)
T PLN03073 320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-----PKTF 394 (718)
T ss_pred HHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-----CCEE
Confidence 234566778888886 5678899999999999999999999999999999999999999999999999886 3599
Q ss_pred EEEccCcchhh-cCCEEEEEeCCEEE-EecChhhHH
Q 024738 214 LWVTHRLEELE-YADGAFYMEDGKIV-MQADGVSIL 247 (263)
Q Consensus 214 iivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
|+||||.+++. .||++++|++|++. +.|+..++.
T Consensus 395 iivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 395 IVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999985 79999999999996 566665443
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=309.82 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=177.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.++++||+|.|... +++|+||||++.+|+.+||+||||+||||++|++..+...++|.|.+++
T Consensus 537 ~i~fsnvtF~Y~p~----k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG----KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred eEEEEEeEEecCCC----CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence 69999999999764 4899999999999999999999999999999999999999999999986
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH--HHHH-cCCC----cccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK--ALDA-VGMS----NYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~--~l~~-~~l~----~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.||.||||.. .+..|+.+|+.++- ...+.++..+.+.. +-++ +++. .....+.-.|||||||||||||+
T Consensus 613 ~IGVVPQDtv--LFNdTI~yNIryak--~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 613 SIGVVPQDTV--LFNDTILYNIRYAK--PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred hcCcccCcce--eecceeeeheeecC--CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 4899999875 34459999998863 23445555443332 2222 3343 33455667899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhhhhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKS 252 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
++++|.+++|||.||+||..+.+.+...|.++++ ++|-|+|.|++..+-.||.|+++++|+|++.|.++++.....+
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~IQaaL~rlca---~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG 765 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAIQAALARLCA---NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGG 765 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc---CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCC
Confidence 9999999999999999999999999999999985 4688999999999999999999999999999999999876333
Q ss_pred h
Q 024738 253 R 253 (263)
Q Consensus 253 ~ 253 (263)
.
T Consensus 766 ~ 766 (790)
T KOG0056|consen 766 A 766 (790)
T ss_pred c
Confidence 3
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=268.84 Aligned_cols=156 Identities=38% Similarity=0.585 Sum_probs=128.6
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccc
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVM 114 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~ 114 (263)
+++|++++|.++ .+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|++++.- +.+.. .
T Consensus 1 ~~~~~~~~~~~~-----~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~--~~~~~-----~ 68 (157)
T cd00267 1 EIENLSFRYGGR-----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKD--IAKLP-----L 68 (157)
T ss_pred CeEEEEEEeCCe-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE--cccCC-----H
Confidence 368999999753 59999999999999999999999999999999999999999999998631 11100 0
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~ 194 (263)
......+.+. . +||+||+||++||||++.+|++++|||||++||+.++
T Consensus 69 ~~~~~~i~~~-------~-------------------------qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~ 116 (157)
T cd00267 69 EELRRRIGYV-------P-------------------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR 116 (157)
T ss_pred HHHHhceEEE-------e-------------------------eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 0000000000 0 0999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK 236 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~ 236 (263)
..+.+.+.++... +.|+|++||+++++. .||++++|++|+
T Consensus 117 ~~l~~~l~~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 117 ERLLELLRELAEE--GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999998643 579999999999985 689999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=346.56 Aligned_cols=190 Identities=28% Similarity=0.395 Sum_probs=158.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.++|++|+|..+ ..|+++|+.|+... .
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~--~~Ti~eNI~~g~~~---~ 514 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIM--PGTIKDNIIFGLSY---D 514 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccC--CccHHHHHHhcccc---c
Confidence 589999999999999999999999999999999999999999999999999999998643 34999999987421 2
Q ss_pred hHHHHHH-----HHHHHHHcCC--CcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHH
Q 024738 132 HDEVRSK-----VAKALDAVGM--SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-VKN 203 (263)
Q Consensus 132 ~~~~~~~-----~~~~l~~~~l--~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~-l~~ 203 (263)
.....+. +.+.++.+.. ......++.+||||||||++||||++.+|+++||||||++||+..++.+++. +..
T Consensus 515 ~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~ 594 (1490)
T TIGR01271 515 EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594 (1490)
T ss_pred hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1111111 1122222221 2234567889999999999999999999999999999999999999999985 566
Q ss_pred HHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 204 LLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+. +++|+|+|||+++.+..||++++|++|++++.|+++++.+.
T Consensus 595 ~~---~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 595 LM---SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred Hh---cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 53 25799999999999988999999999999999999988753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=322.23 Aligned_cols=181 Identities=29% Similarity=0.345 Sum_probs=153.0
Q ss_pred eEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----------EcC-------
Q 024738 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----------VKR------- 99 (263)
Q Consensus 38 nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-----------~~~------- 99 (263)
+++++|+.+ ..+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~~----~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 78 EPVHRYGVN----GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred CceEEecCC----ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH
Confidence 379999753 24899999 9999999999999999999999999999999999996 543
Q ss_pred --------ceEEEecCCCCc--ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 --------PKSFVFQNPDHQ--VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 --------~~~~v~q~~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
++++.+|..... .+..|+.+++... +..+++.++++.++|...+++++.+|||||||||+|
T Consensus 153 ~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~i 223 (590)
T PRK13409 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAI 223 (590)
T ss_pred HHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 135556543221 1223788877531 223567889999999988999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCC
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDG 235 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G 235 (263)
|+||+.+|++|||||||++||+..+..+.+.|+++++ |.|||+||||++++. .||++++|+++
T Consensus 224 a~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~---g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 224 AAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE---GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999853 579999999999985 79999999863
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=341.48 Aligned_cols=195 Identities=23% Similarity=0.253 Sum_probs=164.8
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEEcC------------ceEEEecCCCCcccc
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL----KPTNGHVYVKR------------PKSFVFQNPDHQVVM 114 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~----~p~~G~I~~~~------------~~~~v~q~~~~~~~~ 114 (263)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.+++ .++|++|++.....+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46999999999999999999999999999999999986 57999999965 279999987544333
Q ss_pred cCHHHHHHhhccCC-------CCChHHHHHH-HHHHHHHcCCCcccCCC-----CCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 115 PTVEADVAFGLGNL-------NLTHDEVRSK-VAKALDAVGMSNYLQRP-----VQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 115 ~tv~~~~~~~~~~~-------~~~~~~~~~~-~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
||+|++.++.... +...++..++ ++++++.+||++..+++ +..|||||||||+||+||+.+|++++
T Consensus 154 -TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 154 -TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred -CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 9999998864321 1233333333 45689999998776654 57899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc-chh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL-EEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||||+|||+.++..+++.|++++++ .|+|||+++|++ +.+ +.+|++++|++|++++.|+++++.
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~-~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANI-LDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999998753 368999999997 455 689999999999999999998763
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=342.77 Aligned_cols=191 Identities=28% Similarity=0.366 Sum_probs=160.4
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+.++|++|+|.. +..|+++|+.++.. .
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l--~~~Tv~enI~~~~~---~ 747 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWI--MNATVRGNILFFDE---E 747 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCcc--CCCcHHHHHHcCCh---h
Confidence 368999999999999999999999999999999999999999999999999999999864 33599999988532 1
Q ss_pred ChHHHHH-----HHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 131 THDEVRS-----KVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 131 ~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
..+...+ .+.+.++.+ |+....++++.+||||||||++|||||+.+|+++||||||++||+...+.+++.+..
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~ 827 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1111111 223345555 676677888999999999999999999999999999999999999998888775432
Q ss_pred HHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 204 LLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
... .|+|+|++||+++.+..||+|++|++|++++.|+.+++.+
T Consensus 828 ~~~--~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 828 GAL--AGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred Hhh--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 111 2689999999999998999999999999999999988765
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=279.44 Aligned_cols=184 Identities=25% Similarity=0.317 Sum_probs=134.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHH-HHHh--------------------CCCCCCceEEEEcC-ceEEEecCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLL-KVLA--------------------GLLKPTNGHVYVKR-PKSFVFQNP 108 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~i~--------------------Gl~~p~~G~I~~~~-~~~~v~q~~ 108 (263)
.++|+++||+|++||+++|+||||||||||+ .++. .+..|..+++ .+ ...+..|++
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 85 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSI--EGLSPAIAIDQK 85 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccc--cCCCceEEecCC
Confidence 4699999999999999999999999999996 3332 1122222221 11 233444443
Q ss_pred CCccc-ccCHH---HHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC--CEEE
Q 024738 109 DHQVV-MPTVE---ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC--KVLL 181 (263)
Q Consensus 109 ~~~~~-~~tv~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p--~lll 181 (263)
..... ..++. +...+..... ......++ .++++.+++.+ ..++++.+|||||+||++|||||+.+| ++||
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~lll 162 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYV 162 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 21111 11322 2211111011 11122233 46899999986 589999999999999999999999998 5999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEec
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQA 241 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g 241 (263)
|||||++||+..+..+.+.|+++++ .|.|+|++|||++++.+||++++| ++|+|+++|
T Consensus 163 lDEPt~gLD~~~~~~l~~~l~~~~~--~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 163 LDEPSIGLHPRDNDRLIETLKRLRD--LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHh--CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9999999999999999999999854 368999999999988899999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=259.32 Aligned_cols=192 Identities=28% Similarity=0.414 Sum_probs=166.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~---------- 99 (263)
++.++||+.+.+++ ..|-++||+|.+||++.|+||||||||||+..+.|.+.++ +|++.+++
T Consensus 2 ~l~l~nvsl~l~g~-----cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS-----CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecCCCc-----eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 68899999888775 4899999999999999999999999999999999999874 79999864
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
++|++||++.+++.+ +|.+|+.|++... ...+..++.+..++++.||+...++.|.+||||||-||++.|+|+.+|+
T Consensus 77 Rq~GiLFQD~lLFphl-sVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 77 RQIGILFQDALLFPHL-SVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred hheeeeeccccccccc-ccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 589999998765555 9999999876432 3334555677889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
.++||||+|.||..-+.++.+..-.-.+. -|..+|+||||.+.+..-.||+-|
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~-agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRA-AGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHh-cCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999877665443 478899999999998876777655
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=269.00 Aligned_cols=180 Identities=29% Similarity=0.428 Sum_probs=152.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------ 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~------------ 100 (263)
+++.+|++...+.. .++.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+|++.
T Consensus 2 ~L~a~~L~~~R~e~-----~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~ 76 (209)
T COG4133 2 MLEAENLSCERGER-----TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76 (209)
T ss_pred cchhhhhhhccCcc-----eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHH
Confidence 57889999887653 6999999999999999999999999999999999999999999999742
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
.-|+...+.....+ |+.||+.|.....+. .....+.++++.+||....+.++.+||.|||+||+|||-++..++++
T Consensus 77 l~yLGH~~giK~eL-Ta~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 77 LLYLGHQPGIKTEL-TALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHhhccccccchh-hHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 23444444433333 999999987554432 11345778999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
||||||++||..+...+-.++...+.+ +| .||.+||..-.+
T Consensus 153 iLDEP~taLDk~g~a~l~~l~~~H~~~-GG-iVllttHq~l~~ 193 (209)
T COG4133 153 ILDEPFTALDKEGVALLTALMAAHAAQ-GG-IVLLTTHQPLPI 193 (209)
T ss_pred eecCcccccCHHHHHHHHHHHHHHhcC-CC-EEEEecCCccCC
Confidence 999999999999999999999987654 34 789999987654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=303.67 Aligned_cols=203 Identities=32% Similarity=0.398 Sum_probs=172.1
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecC
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQN 107 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~ 107 (263)
....++++|+++.|++. .++++++||.|.+|+.+||+||||||||||||+|+|...|.+|+|.+.. ++||..|+
T Consensus 318 g~~vl~~~~~~~~y~~~----~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~ 393 (530)
T COG0488 318 GKLVLEFENVSKGYDGG----RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH 393 (530)
T ss_pred CCeeEEEeccccccCCC----ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEeh
Confidence 34689999999999764 3699999999999999999999999999999999999999999999876 48999998
Q ss_pred CCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 108 PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 108 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
........|+.+++.-..... ....+...|..|++. +...+++..||||||-|+.||+.++.+|.+|||||||
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~~------~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPDG------DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred hhhcCccCcHHHHHHhhCccc------cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence 743323337888775432111 145677899999997 5678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEe-cChhhHHh
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ-ADGVSILN 248 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~-g~~~~~~~ 248 (263)
|.||..+++.+.+.|.++ .| |||+||||..+++ .|++++.+.+ ++... |..++..+
T Consensus 468 NhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 468 NHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred ccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999987 24 9999999999995 7999999998 66554 66555543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=337.19 Aligned_cols=196 Identities=29% Similarity=0.440 Sum_probs=164.8
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcC----------ceEEEecCCCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKR----------PKSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~----------~~~~v~q~~~~~~~~~tv 117 (263)
+++|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.+++ .++|++|++.....+ ||
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l-TV 256 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM-TV 256 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcC-cH
Confidence 46999999999999999999999999999999999999998 99999975 379999987544333 99
Q ss_pred HHHHHhhccCCC----------CChHHH------------------------HHHHHHHHHHcCCCccc-----CCCCCC
Q 024738 118 EADVAFGLGNLN----------LTHDEV------------------------RSKVAKALDAVGMSNYL-----QRPVQT 158 (263)
Q Consensus 118 ~~~~~~~~~~~~----------~~~~~~------------------------~~~~~~~l~~~~l~~~~-----~~~~~~ 158 (263)
+|++.++....+ ...++. ...++++++.+||++.. ++.++.
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999988643221 011110 01246789999998644 567789
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc-hh-hcCCEEEEEeCCE
Q 024738 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-EL-EYADGAFYMEDGK 236 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~-~~-~~~d~v~~l~~G~ 236 (263)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++. .|+|+|+++|++. ++ +.+|+|++|++|+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~-~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL-TEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999998753 3689999999974 54 6899999999999
Q ss_pred EEEecChhhHHh
Q 024738 237 IVMQADGVSILN 248 (263)
Q Consensus 237 i~~~g~~~~~~~ 248 (263)
+++.|+.+++.+
T Consensus 416 ivy~G~~~~~~~ 427 (1470)
T PLN03140 416 IVYQGPRDHILE 427 (1470)
T ss_pred EEEeCCHHHHHH
Confidence 999999887753
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=308.86 Aligned_cols=213 Identities=28% Similarity=0.431 Sum_probs=186.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEEcC----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP---TNGHVYVKR---------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---~~G~I~~~~---------- 99 (263)
.+.++|++....++....+++|+|||..+++||++||+||+||||||||++|+|.... .+|+|.+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 6889999988866422346799999999999999999999999999999999999874 789999987
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCC-----CCChHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQ-----TLSGGQKQRVAIAG 171 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAr 171 (263)
..|||.|+....... ||+|.+.+.+..+ ..+.++.+++++++++.+||....|..++ .+||||||||+||.
T Consensus 105 ~s~yV~QdD~l~~~L-TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTL-TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred eeEEEcccccccccc-cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHH
Confidence 269999997544433 9999998875432 23567788999999999999988888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
-|+++|.+|++||||+|||.....++++.|++++++ |+|||++=|.+.. + ...|++++|.+|++++.|++.+..+
T Consensus 184 Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~--grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 184 ELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS--GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC--CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 999999999999999999999999999999999864 7899999999975 4 7899999999999999999986554
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=323.20 Aligned_cols=211 Identities=29% Similarity=0.370 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..+.++|+++.|+... .+++++||.|++||+.|++|+|||||||++|+|+|..+|++|++++.+
T Consensus 563 ~~~~~~~L~k~y~~~~----~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~ 638 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD----GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638 (885)
T ss_pred ceEEEcceeeeecchh----hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhh
Confidence 4799999999998752 289999999999999999999999999999999999999999999954
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.+||.||.......+ |.+|.+.+.+...++...+..+.++.+++.++|.++++++++.||||+|+|+.+|.|++.+|
T Consensus 639 ~~~iGyCPQ~d~l~~~l-T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p 717 (885)
T KOG0059|consen 639 RKQLGYCPQFDALWEEL-TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDP 717 (885)
T ss_pred hhhcccCCchhhhhhhc-cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCC
Confidence 389999986544434 99999998887788888888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++++|||||+|+||.+++.+++++.++.+. |+.||++||.+++++ .|||+.+|.+|++...|++.++.+.
T Consensus 718 ~vi~LDEPstGmDP~arr~lW~ii~~~~k~--g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 718 SVILLDEPSTGLDPKARRHLWDIIARLRKN--GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999998653 449999999999997 6999999999999999999988654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=286.05 Aligned_cols=206 Identities=27% Similarity=0.441 Sum_probs=174.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP------------ 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~------------ 100 (263)
.+.++|++|.|... .++|+++||++++|+.++++||+|+||||+++++..++++.+|.|.++++
T Consensus 262 ~v~F~~V~F~y~~~----r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~ 337 (497)
T COG5265 262 AVAFINVSFAYDPR----RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRR 337 (497)
T ss_pred eEEEEEEEeecccc----chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHH
Confidence 58999999999765 47999999999999999999999999999999999999999999999763
Q ss_pred -eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH-----HHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 101 -KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK-----ALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 101 -~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
||.+||+.. .+..|...|+.++... .+.++....++. .++.+ |++.....+.-.|||||||||+|||+
T Consensus 338 aIg~VPQDtv--LFNDti~yni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 338 AIGIVPQDTV--LFNDTIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred HhCcCcccce--ehhhhHHHHHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHH
Confidence 899999865 3445999999987432 334443322221 12221 33333445566899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++.+|++|+|||.||+||..+.+++...|++..+ |.|.+++.|++..+--||.|+||++|+|++.|++++++..
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~~---~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVSA---GRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC---CCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999999999999999853 5799999999999999999999999999999999999876
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=257.81 Aligned_cols=199 Identities=29% Similarity=0.370 Sum_probs=167.3
Q ss_pred eEEEEeEEEEECCCccc--cccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRK--LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~--~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.|.++|++|+|-=+..+ .-++++|+||+++.|||+++-||||||||||||++.|-+.|++|+|.+..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 68999999998533222 24799999999999999999999999999999999999999999999841
Q ss_pred ----------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHH
Q 024738 100 ----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 168 (263)
.+|||.|.-...+.. +..+-+.-++...+...+..+.++..++.++++. .++.-.|.++||||+|||.
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV-~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRV-SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCc-chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 379999964322222 4445455554455777788888999999999997 5789999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeC
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMED 234 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~ 234 (263)
|||.++.+-++|||||||++||..++..+.++|.+.. ..|..+|=+-||-+.-+ .|||++-|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K--a~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK--ARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHH--hcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999863 35789999999977754 7999988753
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=314.22 Aligned_cols=205 Identities=31% Similarity=0.407 Sum_probs=174.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
...++++|.+++.+.. ...+.|+||||+|++|+.+||+|+-|||||+||.+|.|-++..+|+|.++|.++|++|.|..
T Consensus 516 ~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 4579999999998763 22358999999999999999999999999999999999999999999999999999999853
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL-----------QRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
+..|++|||.|+.. ++ +++.++.++.+.|++.+ ..+.-+||||||||++||||+..++|+
T Consensus 594 --~ngTvreNILFG~~---~d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI 664 (1381)
T KOG0054|consen 594 --QNGTVRENILFGSP---YD----EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI 664 (1381)
T ss_pred --hCCcHHHhhhcCcc---cc----HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE
Confidence 44599999999843 22 23344555555554322 345679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|||.|+|++|....+.+.+..-...- +++|+|+|||.++.++.||.|++|++|+|++.|+.+|+.+
T Consensus 665 YLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 665 YLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred EEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 999999999999999888876554322 3579999999999999999999999999999999999885
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=310.03 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=175.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
-.|+++|++.+|..+. ..||+||||+|++||.+||||..|||||||+.+|..+..|.+|+|.|++
T Consensus 1137 G~I~f~~~~~RYrp~l---p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNL---PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CeEEEEEeEEEeCCCC---cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 3799999999997642 4799999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv 167 (263)
+++.+||+|. .|..|++.|+.= +. ..++++ +-++|+..+|. .....-..++|-||||.+
T Consensus 1214 srlsIIPQdPv--LFsGTvR~NLDP-f~--e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1214 SRLSIIPQDPV--LFSGTVRFNLDP-FD--EYSDDE----IWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred hcCeeeCCCCc--eecCccccccCc-cc--ccCHHH----HHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 5899999996 355699999742 11 223333 33445554443 333334468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+++.+||+|||+|+++|+.+-..+.+.|++..+ ++|||.+-|+++.+--||||+||++|++++.++|.+++
T Consensus 1285 CLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~---dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK---DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred HHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc---CCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHH
Confidence 999999999999999999999999999999999998654 58999999999999999999999999999999999999
Q ss_pred hhhhhh
Q 024738 248 NFIKSR 253 (263)
Q Consensus 248 ~~~~~~ 253 (263)
++..+.
T Consensus 1362 ~~~~S~ 1367 (1381)
T KOG0054|consen 1362 SDKDSL 1367 (1381)
T ss_pred hCCcch
Confidence 864433
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=259.57 Aligned_cols=183 Identities=27% Similarity=0.341 Sum_probs=137.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh--------CC--CCCCceEEEEc----CceEEEecCCCCcc------
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA--------GL--LKPTNGHVYVK----RPKSFVFQNPDHQV------ 112 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~--------Gl--~~p~~G~I~~~----~~~~~v~q~~~~~~------ 112 (263)
-|+|+|++|+.|.+++|+|+||||||||++.+. +. ..|..++.... ..+-+|.|.|....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998652 11 11322222110 11233444331100
Q ss_pred ---------------------------------------cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-cc
Q 024738 113 ---------------------------------------VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YL 152 (263)
Q Consensus 113 ---------------------------------------~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~ 152 (263)
...|+.+++.|.... .. ..++.++++.+||.. .+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~-----~~-~~~~~~~L~~vgL~~l~l 163 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI-----PK-IARKLQTLCDVGLGYIKL 163 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh-----hh-HHHHHHHHHHcCCchhhh
Confidence 011444444332111 01 234567899999987 58
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEE
Q 024738 153 QRPVQTLSGGQKQRVAIAGALAEA---CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGA 229 (263)
Q Consensus 153 ~~~~~~LSgGqkqRv~lAral~~~---p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v 229 (263)
++++.+|||||+||++|||+|+.+ |+++||||||+|||+..+..+.+.|+++.++ |.|||++||++++++.||++
T Consensus 164 ~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~--g~tvIiitH~~~~i~~aD~i 241 (261)
T cd03271 164 GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK--GNTVVVIEHNLDVIKCADWI 241 (261)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHhCCEE
Confidence 999999999999999999999996 7999999999999999999999999998643 67999999999998889999
Q ss_pred EEE------eCCEEEEecCh
Q 024738 230 FYM------EDGKIVMQADG 243 (263)
Q Consensus 230 ~~l------~~G~i~~~g~~ 243 (263)
++| ++|++++.|++
T Consensus 242 i~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 242 IDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEecCCcCCCCCEEEEeCCC
Confidence 999 89999999864
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=248.67 Aligned_cols=154 Identities=25% Similarity=0.396 Sum_probs=127.2
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce---------EEEEc----------CceEEEecCCCCccccc
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG---------HVYVK----------RPKSFVFQNPDHQVVMP 115 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G---------~I~~~----------~~~~~v~q~~~~~~~~~ 115 (263)
++++|++++| +++|+||||||||||+++|+|+++|..| ++.+. .+++++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7899999999 9999999999999999999999876633 44432 2579999998644
Q ss_pred CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCH
Q 024738 116 TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDE 191 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~----~~p~llllDEPts~LD~ 191 (263)
++.. . .+++.++++. .+..++++.+||+|||||++||++++ .+|+++||||||++||+
T Consensus 89 -------~~~~----~----~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 89 -------YSII----S----QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred -------eeEE----e----hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCH
Confidence 1110 0 2345566666 55678899999999999999999997 46799999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
..+..+.+.|+++.+ +.|||++||+++.++.||+++.|..
T Consensus 151 ~~~~~l~~~l~~~~~---~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 151 ANVERFARLLKEFSK---ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHhcc---CCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999743 4799999999998889999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=244.31 Aligned_cols=199 Identities=26% Similarity=0.364 Sum_probs=170.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
++.++||+..- -|-.+|..+..||++-++|||||||||||-.++|++ |-+|+|.+.|
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLAr 72 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELAR 72 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHH
Confidence 67888887652 477899999999999999999999999999999987 6899999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh----
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE---- 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~---- 175 (263)
+.+|+.|+....+.+ .|+..+.+. .+.++....+.++...+++++++.+...+|||||.|||-+|..++.
T Consensus 73 hRAYLsQqq~p~f~m-pV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd 146 (248)
T COG4138 73 HRAYLSQQQTPPFAM-PVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPD 146 (248)
T ss_pred HHHHHhhccCCcchh-hhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCC
Confidence 357888876544333 677766553 2235556677888999999999999999999999999999988763
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-hhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ---ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ---~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
..++||+|||.++||...+..+..+|.+++.. |.+|||++||++- ++.||+++.++.|++...|..++++.+
T Consensus 147 ~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~--G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 147 ANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ--GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC--CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 44799999999999999999999999999864 7899999999996 689999999999999999999999875
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=230.87 Aligned_cols=120 Identities=41% Similarity=0.674 Sum_probs=103.3
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ceEEEecCCCCcccccCHHHH
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PKSFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~~~v~q~~~~~~~~~tv~~~ 120 (263)
|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++ .++|++|++.... ..|+.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP-GLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT-TSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 6899999999999999999999999999999999999999999974 4899999864333 2378887
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCC----CCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 024738 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV----QTLSGGQKQRVAIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~LSgGqkqRv~lAral~~~p~llllDEPts 187 (263)
...+++.++++.+++.+..++.+ .+||+|||||++|||||+.+|+++|||||||
T Consensus 80 -------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23455778888888766555555 9999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=240.84 Aligned_cols=182 Identities=25% Similarity=0.266 Sum_probs=136.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEe-CCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEEc------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVP-SGQLWMLLGPNGCGKSTLLKVLAGL-LKPTNGHVYVK------------ 98 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~-~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~p~~G~I~~~------------ 98 (263)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|++. +-+..+.....
T Consensus 5 ~i~l~nf~-~y~~~--------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~ 75 (213)
T cd03279 5 KLELKNFG-PFREE--------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDT 75 (213)
T ss_pred EEEEECCc-CcCCc--------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCcc
Confidence 58899998 66432 56667654 5899999999999999999999964 33443433321
Q ss_pred CceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh---
Q 024738 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--- 175 (263)
Q Consensus 99 ~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--- 175 (263)
..++++||++.... ++.. ..+.+.++..+.+ .+...++.+.+++++.+||+||+||++|||||+.
T Consensus 76 ~~v~~~f~~~~~~~---~~~r-------~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~ 143 (213)
T cd03279 76 AEVSFTFQLGGKKY---RVER-------SRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEV 143 (213)
T ss_pred EEEEEEEEECCeEE---EEEE-------ecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHH
Confidence 24788888764322 1111 1133333332211 2455567778899999999999999999999985
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 176 -------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 176 -------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
+|+++||||||++||+..+..+.+.|.+++++ +.|+|++||+++++. .||+++++++|.+
T Consensus 144 ~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~--~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 144 LQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE--NRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 57899999999999999999999999998542 679999999999884 7999999999864
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=258.73 Aligned_cols=204 Identities=24% Similarity=0.379 Sum_probs=174.0
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP---------- 100 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~---------- 100 (263)
.+.++++|++..- .++|+||++.+|||+||.|-=|||+|-|+++|.|..++++|+|.++++
T Consensus 261 ~~~l~v~~l~~~~---------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 261 EPVLEVRNLSGGG---------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred CcEEEEecCCCCC---------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 4579999997541 479999999999999999999999999999999999999999999863
Q ss_pred ----eEEEecCCCCcc--cccCHHHHHHhh-ccC---C-CCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHH
Q 024738 101 ----KSFVFQNPDHQV--VMPTVEADVAFG-LGN---L-NLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 101 ----~~~v~q~~~~~~--~~~tv~~~~~~~-~~~---~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 168 (263)
++|++.|....- ...++.+|+.++ +.. . -.+....++.+.++.+.+++. ...++++.+||||.+|||.
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 799998854222 223999998776 211 1 133444456788899999996 5577999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
|||.|+.+|++|||||||.|+|.-++.+++++|++++++ |++||++|-++.++ ..||||+||++|+++..-+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~--G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE--GKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC--CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999999999864 78999999999997 6899999999999998766655
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=240.81 Aligned_cols=185 Identities=23% Similarity=0.252 Sum_probs=119.1
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh----------------CCCCCCce----
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA----------------GLLKPTNG---- 93 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~----------------Gl~~p~~G---- 93 (263)
|+++|.. +|++. .++++++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 4 i~~~nfk-sy~~~-----~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~ 72 (243)
T cd03272 4 VIIQGFK-SYKDQ-----TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVM 72 (243)
T ss_pred EEEeCcc-CcccC-----cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCc
Confidence 5666653 45442 4777876 7899999999999999999998 44445455
Q ss_pred ----EEEEcC----------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHH--HHHHHHHHHcCCCcc
Q 024738 94 ----HVYVKR----------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR--SKVAKALDAVGMSNY 151 (263)
Q Consensus 94 ----~I~~~~----------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~ 151 (263)
+|.+++ .+++++|+........+..+...+ +...++...... ....++.+.+++.+.
T Consensus 73 ~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~-l~~~gl~~~~~~~~~~qg~i~~l~~l~~~ 151 (243)
T cd03272 73 SAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNL-LESAGFSRSNPYYIVPQGKINSLTNMKQD 151 (243)
T ss_pred eEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHH-HHHcCCCCCCCcEEEEcCchHHhhhcccc
Confidence 222211 123333322111101122222111 111111110000 000012222344445
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 152 LQRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
.++++.+||||||||++|||||+. +|+++|+||||++||+.+++.+++.|+++.+ +.+||++||+.+..+.||
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~---~~~ii~~~h~~~~~~~~d 228 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD---GAQFITTTFRPELLEVAD 228 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHhhCC
Confidence 678899999999999999999974 5899999999999999999999999999743 468888898877668999
Q ss_pred EEEEEe
Q 024738 228 GAFYME 233 (263)
Q Consensus 228 ~v~~l~ 233 (263)
++++|.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=243.15 Aligned_cols=167 Identities=25% Similarity=0.311 Sum_probs=128.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEcC----------------ceEEEecCCCCc------cc--ccCHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVKR----------------PKSFVFQNPDHQ------VV--MPTVE 118 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~~----------------~~~~v~q~~~~~------~~--~~tv~ 118 (263)
..+++|+||||||||||+++|++++.|+ .|++++.+ .+++++|++... .. ..+|.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 35665521 478999986321 00 11555
Q ss_pred HHHHhhccCCC-C-ChHHHHHHHHHHHHHcCCC--------------------cccCCCCCCCChHHHHHHHHHHHHh--
Q 024738 119 ADVAFGLGNLN-L-THDEVRSKVAKALDAVGMS--------------------NYLQRPVQTLSGGQKQRVAIAGALA-- 174 (263)
Q Consensus 119 ~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~--------------------~~~~~~~~~LSgGqkqRv~lAral~-- 174 (263)
+++..+..... . ......+++.++++.+++. +..++++.+||+|||||++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 55443321110 1 1223346788899999986 4456889999999999999999998
Q ss_pred --hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 175 --EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 175 --~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
.+|+++|+||||++||+..+..+.+.|+++. + |.|+|++||+.+.++.||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~--g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K--GSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C--CCEEEEEECCHHHHHhCCEEEEEE
Confidence 5789999999999999999999999999874 2 579999999977778999998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=259.91 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=163.8
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.+.+.++|++|.|.++. .++++++|-|..++.+++|||||||||||||+++|.+.|+.|.|.-.. ++++.-|..
T Consensus 387 ~pvi~~~nv~F~y~~~~----~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~ 462 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP----MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHL 462 (614)
T ss_pred CCeEEEeccccCCCCcc----hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhh
Confidence 46899999999998652 589999999999999999999999999999999999999999997543 344444543
Q ss_pred CCccccc-CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 109 DHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 109 ~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
.....+. +..+++.-.+. .....+.+..++.++||+ +....++.+||.|||.||++|+.++.+|.+|||||||
T Consensus 463 ~e~ldl~~s~le~~~~~~~-----~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFP-----DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred HhhcCcchhHHHHHHHhcc-----ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 2222222 55555432221 112245677899999998 6678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE-EecChhhHH
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV-MQADGVSIL 247 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
++||..+...+.+.|.++ .| ++|+||||..++. +++++++..+|.+. ..|+.....
T Consensus 538 nhLDi~tid~laeaiNe~----~G-gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 538 NHLDIETIDALAEAINEF----PG-GVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred cCCCchhHHHHHHHHhcc----CC-ceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 999999999999999886 23 7899999999985 79999999998875 456655443
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-33 Score=240.56 Aligned_cols=186 Identities=17% Similarity=0.160 Sum_probs=133.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
.|+++|.. +|++. .++++++| ++++|+||||||||||+++|.-..-.+.... -.+++++++|....+.
T Consensus 5 ~l~l~nfk-~~~~~-----~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~ 72 (212)
T cd03274 5 KLVLENFK-SYAGE-----QVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHP 72 (212)
T ss_pred EEEEECcc-cCCCC-----eeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCC
Confidence 47888886 67653 58999988 8999999999999999999983211110011 0135777887754332
Q ss_pred cccCHHHHHHhhccC--------CCCChHHHHH--HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh----CCC
Q 024738 113 VMPTVEADVAFGLGN--------LNLTHDEVRS--KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE----ACK 178 (263)
Q Consensus 113 ~~~tv~~~~~~~~~~--------~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~ 178 (263)
.. ++.+.+.+.... .+...+.... ...++++.+++.+..++++..||+|||||++||||++. +|+
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 73 NL-DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred CC-ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 22 444443332211 1111111000 01455677788888888999999999999999999974 579
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
+++|||||+|||+.++..+++.++++.+ +.|+|++||+.+..+.||++++|..
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~~---~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTK---NAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHcC---CCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999999999999999999999742 3589999999766689999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=274.20 Aligned_cols=203 Identities=22% Similarity=0.319 Sum_probs=155.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHH---------HHhCCCCC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLK---------VLAGLLKP------------- 90 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk---------~i~Gl~~p------------- 90 (263)
.|++++++. ..|+|+||+|++||+++|+|+||||||||++ .+.|...+
T Consensus 600 ~L~l~~~~~----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi 669 (1809)
T PRK00635 600 TLTLSKATK----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLV 669 (1809)
T ss_pred eEEEecccc----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeE
Confidence 688888762 2699999999999999999999999999999 56665322
Q ss_pred -----------CceEEEEcC---------------------ceEEEecC------------------CCC----------
Q 024738 91 -----------TNGHVYVKR---------------------PKSFVFQN------------------PDH---------- 110 (263)
Q Consensus 91 -----------~~G~I~~~~---------------------~~~~v~q~------------------~~~---------- 110 (263)
-++.+++-+ ...|.|+. +..
T Consensus 670 ~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~Gk 749 (1809)
T PRK00635 670 HITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGK 749 (1809)
T ss_pred EecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCc
Confidence 122233100 01122321 000
Q ss_pred ---------cccccCHHHHHHhhcc---CCCCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHh---
Q 024738 111 ---------QVVMPTVEADVAFGLG---NLNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALA--- 174 (263)
Q Consensus 111 ---------~~~~~tv~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~--- 174 (263)
.....|+.|++.++.. ......++..+++ ++++.+||... +++++.+|||||+||++|||||+
T Consensus 750 Ry~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~ 828 (1809)
T PRK00635 750 RFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPS 828 (1809)
T ss_pred ccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcC
Confidence 0011277777766532 1112234455566 58899999876 79999999999999999999998
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe------CCEEEEecChhhHHh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME------DGKIVMQADGVSILN 248 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~ 248 (263)
.+|++|||||||+|||+..+..+++.|+++.++ |.|||++||+++.++.||++++|. +|++++.|+++++..
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~--G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ--GHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 699999999999999999999999999998643 689999999999998899999996 799999999999875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=262.41 Aligned_cols=119 Identities=29% Similarity=0.383 Sum_probs=106.3
Q ss_pred HHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEE
Q 024738 139 VAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214 (263)
Q Consensus 139 ~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tii 214 (263)
..+.++.+||.. .+++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+++.|+++.+ .|.|||
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~--~G~TVI 887 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD--KGNTVV 887 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEE
Confidence 356788999986 579999999999999999999999999 99999999999999999999999999864 367999
Q ss_pred EEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhhh
Q 024738 215 WVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYIE 259 (263)
Q Consensus 215 ivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
++||+++.+..||++++| ++|++++.|+++++.....+....|+.
T Consensus 888 iitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~ 938 (943)
T PRK00349 888 VIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLK 938 (943)
T ss_pred EEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHH
Confidence 999999999889999999 799999999999998765555556654
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=226.25 Aligned_cols=159 Identities=25% Similarity=0.343 Sum_probs=124.2
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHh----CCCCCCceEEEEc----------CceEEEecCCCCcccc----cCH
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLA----GLLKPTNGHVYVK----------RPKSFVFQNPDHQVVM----PTV 117 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~----Gl~~p~~G~I~~~----------~~~~~v~q~~~~~~~~----~tv 117 (263)
..++++.+| +++|+||||||||||+++|. |...|++|.+..+ ..++++||++....+. .++
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 344667787 99999999999999999994 9999988865421 1478899987211111 177
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 118 EADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR------VAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR------v~lAral~~~p~llllDEPts~LD~ 191 (263)
.+|+.+. ... .+.+.+ ++++.+||+||+|| ++||||++.+|+++|+||||++||+
T Consensus 94 ~~~~~~~------~~~----~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 94 LENVIFC------HQG----ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154 (204)
T ss_pred hhceeee------chH----HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence 7776542 111 122222 77899999999996 7899999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCC
Q 024738 192 SDQF-GVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDG 235 (263)
Q Consensus 192 ~~~~-~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G 235 (263)
..+. .+.++|.++.++ .+.|||++||+++.+..||+++.|.+.
T Consensus 155 ~~~~~~l~~~l~~~~~~-~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 155 ENIEESLAEIIEERKSQ-KNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred HHHHHHHHHHHHHHHhc-cCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 9999 999999998543 257999999999988889999999643
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=249.55 Aligned_cols=202 Identities=25% Similarity=0.375 Sum_probs=150.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
-+.++|+++.|.+. .+++|++|++.+|+.|||+|+|||||||+|++|+|-..|..-++-+- .+.++.....
T Consensus 75 dvk~~sls~s~~g~-----~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y----~ls~e~~ps~ 145 (614)
T KOG0927|consen 75 DVKIESLSLSFHGV-----ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY----LLSREIEPSE 145 (614)
T ss_pred cceeeeeeeccCCc-----eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchh----hhcccCCCch
Confidence 59999999999763 69999999999999999999999999999999999998876555331 1111100000
Q ss_pred cccCHH-----------------HHHHhhccC-------------CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCCh
Q 024738 113 VMPTVE-----------------ADVAFGLGN-------------LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSG 161 (263)
Q Consensus 113 ~~~tv~-----------------~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 161 (263)
..++. |.+.-.... ...+.+....++.++|..+|.. +..++++..|||
T Consensus 146 -~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 -KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred -HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 00000 000000000 0112233345566677777764 678899999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCE-EEE
Q 024738 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGK-IVM 239 (263)
Q Consensus 162 GqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~-i~~ 239 (263)
|++.|++|||||..+|++|||||||++||+++..++-+.|.++- . .++|+++|+.+++. .|..|+.|++++ +.+
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~-~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---R-IILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---C-ceEEEEecchhhhhhHhhhhheecccceeee
Confidence 99999999999999999999999999999999999999998862 1 28999999999995 899999999999 455
Q ss_pred ecChhhHHh
Q 024738 240 QADGVSILN 248 (263)
Q Consensus 240 ~g~~~~~~~ 248 (263)
.|+.+....
T Consensus 301 ~Gnydqy~~ 309 (614)
T KOG0927|consen 301 EGNYDQYVK 309 (614)
T ss_pred cCCHHHHhh
Confidence 666655443
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=250.80 Aligned_cols=190 Identities=26% Similarity=0.387 Sum_probs=159.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
...|+++|++..-+..+ ..+++.||++++|+.+.|.||||||||||+|+|+|+-+--+|+|.+.. .+-|+||.|
T Consensus 390 ~~~i~~~nl~l~~p~~~----~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~P 465 (604)
T COG4178 390 DHGITLENLSLRTPDGQ----TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP 465 (604)
T ss_pred cceeEEeeeeEECCCCC----eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCC
Confidence 46899999999987653 689999999999999999999999999999999999999999998863 378999988
Q ss_pred CCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCC------CCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 109 DHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR------PVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 109 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
. +...|.++-+.++......+ ++.+.++|.++||.++.++ --..||+|||||+++||.|+++|++++|
T Consensus 466 Y--~p~GtLre~l~YP~~~~~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~L 539 (604)
T COG4178 466 Y--LPQGTLREALCYPNAAPDFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFL 539 (604)
T ss_pred C--CCCccHHHHHhCCCCCCCCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEE
Confidence 4 34459999998875443233 3456678888988754432 2368999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
||.|++||+.+...+++.+++.+ .++|||-|+|......+.++.+-+.
T Consensus 540 DEATsALDe~~e~~l~q~l~~~l---p~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 540 DEATSALDEETEDRLYQLLKEEL---PDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred ecchhccChHHHHHHHHHHHhhC---CCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999998854 3589999999998877666655443
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=222.76 Aligned_cols=219 Identities=22% Similarity=0.310 Sum_probs=173.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----Ec---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VK--------- 98 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-----~~--------- 98 (263)
.|.+.|++..+...+ +...+++++|++++.||+-|++|++|||||-..|+|+|..+- +=.|+ ++
T Consensus 3 LLDIrnL~IE~~Tsq-G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQ-GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCC-CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCCh
Confidence 577889998886543 346799999999999999999999999999999999998753 22332 21
Q ss_pred --------CceEEEecCCCCccccc-CHHHHHHhhccCCCC---Ch---HHHHHHHHHHHHHcCCCc---ccCCCCCCCC
Q 024738 99 --------RPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNL---TH---DEVRSKVAKALDAVGMSN---YLQRPVQTLS 160 (263)
Q Consensus 99 --------~~~~~v~q~~~~~~~~~-tv~~~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~---~~~~~~~~LS 160 (263)
..++++||+|....... ++...+.-....+.+ .. .-.++++.++|.++|+.+ .+..+|.+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 24789999986544321 333333221111111 11 123567889999999974 5678999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEE
Q 024738 161 GGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVM 239 (263)
Q Consensus 161 gGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~ 239 (263)
-||-|+|.||.|++.+|++||.||||+++|+.++.+++.+|.++. +.+++||+++|||+..+ +.||++-||.-|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mN-Qn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLN-QNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhh-ccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 999999999999999999999999999999999999999999985 45689999999999998 5799999999999999
Q ss_pred ecChhhHHhhhhhhh
Q 024738 240 QADGVSILNFIKSRQ 254 (263)
Q Consensus 240 ~g~~~~~~~~~~~~~ 254 (263)
.++.+++.+..++-+
T Consensus 240 Sa~~e~l~~~PhHPY 254 (330)
T COG4170 240 SAPSEELVTMPHHPY 254 (330)
T ss_pred ccchhHHhcCCCCch
Confidence 999999887644433
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=240.09 Aligned_cols=202 Identities=23% Similarity=0.287 Sum_probs=156.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecC-CCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQN-PDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~-~~~~ 111 (263)
.||++|+.|.|.... .-+..||++|++||++-|+|.||||||||+++++|+++|++|+|+++|+- |..+ +..+
T Consensus 322 ~lelrnvrfay~~~~----FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p--V~~e~ledY 395 (546)
T COG4615 322 TLELRNVRFAYQDNA----FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP--VSAEQLEDY 395 (546)
T ss_pred ceeeeeeeeccCccc----ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc--CCCCCHHHH
Confidence 699999999997642 35789999999999999999999999999999999999999999999852 1111 1100
Q ss_pred -ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc---cCC--CCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 112 -VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY---LQR--PVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 112 -~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
..+.+|.....++-...+.......+.+..+++++.+.++ .+. .+..||.|||+|+++.-|++-+.+++++||=
T Consensus 396 R~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW 475 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW 475 (546)
T ss_pred HHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence 0111333333222112222221234567778888877543 233 3468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
-+--||.-++.+.+.+--+.++ .|+||+.+|||-.-...|||++.|++|++++..
T Consensus 476 AADQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 476 AADQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hccCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999999999988776654 589999999998888999999999999998764
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=236.10 Aligned_cols=189 Identities=30% Similarity=0.430 Sum_probs=151.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
..++-..+++.|++- .|+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ..+-+++|=||--...
T Consensus 341 ~lv~y~~~~k~~g~F------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~ 413 (591)
T COG1245 341 TLVEYPDLKKTYGDF------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPD 413 (591)
T ss_pred eeeecchheeecCce------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCC
Confidence 356666777777531 343334466778999999999999999999999999999998 5555789999964322
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
+..||.+.+.-..... +... ....++++-++|++.+++++.+|||||.|||+||.||.++++++|||||++.||.
T Consensus 414 -~~gtV~~~l~~~~~~~-~~~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 414 -YDGTVEDLLRSAIRSA-FGSS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred -CCCcHHHHHHHhhhhh-cccc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 3348988765432211 1111 1223678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc-CCEEEEEe
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYME 233 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~-~d~v~~l~ 233 (263)
+.+..+.+.|+++... .++|.++|.||+-.+.+ +||+++++
T Consensus 489 EqR~~vakvIRR~~e~-~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 489 EQRIIVAKVIRRFIEN-NEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHhh-cCceEEEEecceehhhhhhceEEEEe
Confidence 9999999999998764 46899999999999985 99999986
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=244.42 Aligned_cols=199 Identities=24% Similarity=0.275 Sum_probs=145.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---ce--EEEe
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---PK--SFVF 105 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---~~--~~v~ 105 (263)
+..|.+.+++..|+++ .+|++-++++..|..|||+|+||+|||||||+|+. |+|.... .+ -+++
T Consensus 78 ~~Di~~~~fdLa~G~k-----~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~ 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK-----ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE 146 (582)
T ss_pred ccceeeeeeeeeecch-----hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH
Confidence 4469999999999975 59999999999999999999999999999999998 4443321 00 1111
Q ss_pred cCCCCcccccCHHHHHHhhccCCCCChH-HHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNLTHD-EVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
.......-...+.+.+.- ...+... +..+...++|..+|.+ +...++..+||||.|.|++|||||..+|||||||
T Consensus 147 ~~~~~l~~D~~~~dfl~~---e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD 223 (582)
T KOG0062|consen 147 ALQSVLESDTERLDFLAE---EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD 223 (582)
T ss_pred HHhhhhhccHHHHHHHHh---hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec
Confidence 110000000012222111 1001111 1222233488899997 4567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE-EecChhhHHh
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV-MQADGVSILN 248 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 248 (263)
||||.||..+..++.+.|..+ +.|+|+||||..++. .|..||.+++-++- +.|+-+++-+
T Consensus 224 EPTNhLDv~av~WLe~yL~t~-----~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 224 EPTNHLDVVAVAWLENYLQTW-----KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CCcccchhHHHHHHHHHHhhC-----CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999999999999999999876 269999999999995 79999999987774 4565555443
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=214.97 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=122.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-----eEE---EE-----cCceEEEecCCCCcccccCHHH
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-----GHV---YV-----KRPKSFVFQNPDHQVVMPTVEA 119 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-----G~I---~~-----~~~~~~v~q~~~~~~~~~tv~~ 119 (263)
.++++++++.+| +.+|+||||||||||+.+|........ |.. .+ ...+.+.+++.....
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-------
Confidence 357788888887 889999999999999999885433221 210 00 012556666543111
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHH
Q 024738 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL----AEACKVLLLDELTTFLDESDQF 195 (263)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral----~~~p~llllDEPts~LD~~~~~ 195 (263)
| .........+.++++. .+..++++.+||+|||||++||+|+ +.+|+++||||||++||+..+.
T Consensus 83 ~---------~~~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~ 150 (198)
T cd03276 83 N---------PLCVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRK 150 (198)
T ss_pred C---------cCCHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHH
Confidence 1 0111123456667766 6677889999999999999999999 5899999999999999999999
Q ss_pred HHHHHHHHHHhcC-CCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 196 GVIEAVKNLLGDS-GEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 196 ~l~~~l~~l~~~~-~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
.+.+.|.+++++. ++.|||++||+++.+..+|+|.+|..++
T Consensus 151 ~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 151 ISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999976431 3468999999999987679999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=226.03 Aligned_cols=184 Identities=19% Similarity=0.266 Sum_probs=126.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|. ++|.+. .+|.+.++ +++|+||||||||||+++|++++.+..|++...+
T Consensus 3 ~i~l~nf-~~~~~~----------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~ 70 (247)
T cd03275 3 RLELENF-KSYKGR----------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKP 70 (247)
T ss_pred EEEEECc-cccCCC----------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccC
Confidence 4777776 455421 12333444 9999999999999999999999987777664321
Q ss_pred -----ceEEEe--cCCCCcccccCHHHHH-HhhccCCCCChHHHHHHHHHHHHHcCCCcc--------------------
Q 024738 100 -----PKSFVF--QNPDHQVVMPTVEADV-AFGLGNLNLTHDEVRSKVAKALDAVGMSNY-------------------- 151 (263)
Q Consensus 100 -----~~~~v~--q~~~~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------------- 151 (263)
.+...| |++.......++.+.. .+....... ..+.+.++++.+|+...
T Consensus 71 ~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~----s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 71 DSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVV----SLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred CCceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEe----cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 122333 3222111111111111 111111111 13345677888888421
Q ss_pred --cCCCCCCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc
Q 024738 152 --LQRPVQTLSGGQKQRVAIAGALAEA----CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225 (263)
Q Consensus 152 --~~~~~~~LSgGqkqRv~lAral~~~----p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~ 225 (263)
.++++.+||+|||||++||+|++.+ |+++||||||++||+..+..+.+.|++++++ |.+||++||+.+.++.
T Consensus 147 ~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~--g~~vi~isH~~~~~~~ 224 (247)
T cd03275 147 GKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP--NFQFIVISLKEEFFSK 224 (247)
T ss_pred chhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC--CcEEEEEECCHHHHhh
Confidence 1234589999999999999999875 8999999999999999999999999998642 6799999999888889
Q ss_pred CCEEEEEeC
Q 024738 226 ADGAFYMED 234 (263)
Q Consensus 226 ~d~v~~l~~ 234 (263)
||++++|..
T Consensus 225 ~d~i~~~~~ 233 (247)
T cd03275 225 ADALVGVYR 233 (247)
T ss_pred CCeEEEEEe
Confidence 999999864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=251.62 Aligned_cols=106 Identities=29% Similarity=0.403 Sum_probs=96.6
Q ss_pred HHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEE
Q 024738 139 VAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAE---ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTAL 214 (263)
Q Consensus 139 ~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~---~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tii 214 (263)
..++++.+||.. .+++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+++.|+++.++ |.|||
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~--G~TVI 885 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ--GNTVV 885 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEE
Confidence 446788899985 5799999999999999999999997 59999999999999999999999999998643 67999
Q ss_pred EEccCcchhhcCCEEEEE------eCCEEEEecChhhH
Q 024738 215 WVTHRLEELEYADGAFYM------EDGKIVMQADGVSI 246 (263)
Q Consensus 215 ivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~ 246 (263)
++||+++.++.||++++| ++|++++.|+++++
T Consensus 886 vi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 886 VIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999998889999999 79999999998765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-30 Score=257.65 Aligned_cols=193 Identities=25% Similarity=0.312 Sum_probs=164.2
Q ss_pred cccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC----------ceEEEecCCCCcccccCH
Q 024738 50 LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR----------PKSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 50 ~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~----------~~~~v~q~~~~~~~~~tv 117 (263)
..++|+||+=-+.||-.+||+|+|||||||||++|+|-..- .+|+|.++| .+||+-|+..... ..||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~-~~TV 881 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSP-ELTV 881 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCc-ccch
Confidence 35799999999999999999999999999999999996532 467888865 4799999875433 3399
Q ss_pred HHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcccCCCCCC----CChHHHHHHHHHHHHhhCC-CEEEEeCCCCCC
Q 024738 118 EADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNYLQRPVQT----LSGGQKQRVAIAGALAEAC-KVLLLDELTTFL 189 (263)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----LSgGqkqRv~lAral~~~p-~llllDEPts~L 189 (263)
+|-+.|.+..+ ..+.++..+.++++++.++|+++.+.-++. ||..||+|+.||--|+.+| .||+||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 99998875432 344556668899999999999877766655 9999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch-h-hcCCEEEEEe-CCEEEEecChhh
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L-EYADGAFYME-DGKIVMQADGVS 245 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-~-~~~d~v~~l~-~G~i~~~g~~~~ 245 (263)
|..+...+++.+++++.. |.||+.+-|.+.. + +..|++++|+ +|+.++.|+.-+
T Consensus 962 DsqaA~~i~~~lrkla~t--GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLADT--GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred cHHHHHHHHHHHHHHHhc--CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999863 7899999999985 4 7899999995 688999998754
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=227.62 Aligned_cols=198 Identities=26% Similarity=0.344 Sum_probs=157.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.|.|-+.+|+|.|.+. .+.+.+++|-|.-...+||+||||.||||||++|.|-+.|..|+.+-+. +|||..|..
T Consensus 584 PPvLGlH~VtFgy~gq----kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~ 659 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ----KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHA 659 (807)
T ss_pred CCeeecccccccCCCC----CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhh
Confidence 3579999999999764 3799999999999999999999999999999999999999999987654 578888865
Q ss_pred CCccccc-CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccC-CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 109 DHQVVMP-TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ-RPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 109 ~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
.-..... |..+.+.-. ++++. +.++..|-.+||....+ -.+..|||||+-||++|-.-+..|++|||||||
T Consensus 660 ~E~L~~Eetp~EyLqr~---FNlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 660 NEALNGEETPVEYLQRK---FNLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred HHhhccccCHHHHHHHh---cCCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 4333222 555544322 23432 44567889999975543 567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEE-ecChh
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVM-QADGV 244 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~-~g~~~ 244 (263)
++||..+...+.+.|.++. | .|||||||-.++ +.-...||+++..|-+ +|+-+
T Consensus 733 NNLDIESIDALaEAIney~----G-gVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 733 NNLDIESIDALAEAINEYN----G-GVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred CCcchhhHHHHHHHHHhcc----C-cEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence 9999999999999999872 3 689999999987 4444577777665543 34433
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=223.10 Aligned_cols=210 Identities=22% Similarity=0.341 Sum_probs=179.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP---------- 100 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~---------- 100 (263)
.+.|++++|+..-... .+.+++|||++..|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++++
T Consensus 255 ~~vL~V~~L~v~~~~~----~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 255 EVVLEVEDLSVKDRRG----VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CeEEEEeeeEeecCCC----CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 5689999999875432 36899999999999999999999999999999999999999999999762
Q ss_pred -----eEEEecCCCCccc--ccCHHHHHHhhccC------CC-CChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHH
Q 024738 101 -----KSFVFQNPDHQVV--MPTVEADVAFGLGN------LN-LTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 101 -----~~~v~q~~~~~~~--~~tv~~~~~~~~~~------~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq 165 (263)
++|||.+....-. ..++.+|+.+.... .+ .+..+..+.+.++++.|++. .-...+..+||||.+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 5899998632221 12899998775321 12 34567778888999999996 4566778999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
|+-+||-|..+|++||+.+||.|||..+.+.+.+.|.+.++ .|+.|+++|-|++++ ..||||.||.+|+++...+++
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~--~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD--AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh--cCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 99999999999999999999999999999999999999865 478999999999996 789999999999999988887
Q ss_pred hH
Q 024738 245 SI 246 (263)
Q Consensus 245 ~~ 246 (263)
+.
T Consensus 489 ~~ 490 (501)
T COG3845 489 EA 490 (501)
T ss_pred cC
Confidence 63
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=228.61 Aligned_cols=197 Identities=29% Similarity=0.345 Sum_probs=162.5
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecC
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQN 107 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~ 107 (263)
+.|.+++.+|+|.|..++ .+.+.+++++++.-..++++|+||+||||++|++.|-..|..|.+.+.+ +++|-+|.
T Consensus 359 ~~p~l~i~~V~f~y~p~~---y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qh 435 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSE---YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQH 435 (582)
T ss_pred CCCeeEEEeeeccCCCcc---hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHh
Confidence 456899999999997643 2699999999999999999999999999999999999999999998864 58999997
Q ss_pred CCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 108 PDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 108 ~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
...++.. .+-. +.+-. ...+.. ++.+++-+..+||+ +...+++..||||||-||++|.+...+|-+|+||||
T Consensus 436 hvd~l~~-~v~~-vd~~~~~~pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP 509 (582)
T KOG0062|consen 436 HVDFLDK-NVNA-VDFMEKSFPGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP 509 (582)
T ss_pred hhhHHHH-HhHH-HHHHHHhCCCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC
Confidence 5433222 2211 11111 122333 34566788999998 567778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEe
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQ 240 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~ 240 (263)
||.||.++...+.+.|+.+ + | .||+||||.++++ .|+.+|+.++|++...
T Consensus 510 TNhLD~dsl~AL~~Al~~F---~-G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 510 TNHLDRDSLGALAKALKNF---N-G-GVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred CccccHHHHHHHHHHHHhc---C-C-cEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999987 2 3 6899999999996 7999999999999763
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=226.48 Aligned_cols=195 Identities=27% Similarity=0.408 Sum_probs=157.3
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc--C---ceEEEe
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--R---PKSFVF 105 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~--~---~~~~v~ 105 (263)
+..|++++|+..-+++ +..+++|+||+|+.|+.+.|+||||||||+|+|+++||.+-.+|++.-. + .+-|+|
T Consensus 431 Dn~i~~e~v~l~tPt~---g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflP 507 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN---GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLP 507 (659)
T ss_pred cceEEeeeeeecCCCC---CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEec
Confidence 3589999999998763 2367899999999999999999999999999999999998899999763 3 378999
Q ss_pred cCCCCcccccCHHHHHHhhccCCCC-ChHHHHHHHHHHHHHcCCCcccC-----------CCCCCCChHHHHHHHHHHHH
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNL-THDEVRSKVAKALDAVGMSNYLQ-----------RPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral 173 (263)
|.|. +...|+++.+.++...... ..-..++.+.+.|+.++|.+.+. .-...||+||+||+++||.+
T Consensus 508 QrPY--mt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 508 QRPY--MTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred CCCC--ccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 9884 4445999999887433211 11111344555666665544332 22468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCC
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDG 235 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G 235 (263)
.++|++-||||-||++|.+....+.+.+++. |+|.|-|+|+....++-|.++-|+.+
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-----giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREM-----GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHc-----CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999988888764 68999999999999999999999753
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=193.45 Aligned_cols=196 Identities=32% Similarity=0.462 Sum_probs=152.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP---------- 100 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~---------- 100 (263)
+..|++.++.|+|... .|++-|+|++++.|....++|.||||||||||+++|-.-.-.|.|.+.++
T Consensus 11 ~~aievsgl~f~y~~~----dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS----DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred cceEEEeccEEecccC----CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccc
Confidence 3579999999999764 38999999999999999999999999999999999977666688887543
Q ss_pred ---eEEEecC----------CCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH
Q 024738 101 ---KSFVFQN----------PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 101 ---~~~v~q~----------~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 167 (263)
..|+.-+ ...+..+ ++.. +.++... ... ++-+++++.++++ +.-+.+.+|-|||+||
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~-sae~-mifgV~g--~dp----~Rre~LI~iLDId--l~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDI-SAEH-MIFGVGG--DDP----ERREKLIDILDID--LRWRMHKVSDGQRRRV 156 (291)
T ss_pred cCceeEecccccccccccccccccccc-cHHH-HHhhccC--CCh----hHhhhhhhheecc--ceEEEeeccccchhhh
Confidence 2232211 0011111 3332 3333221 111 2334566666666 3346778999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
.|++.|++.-++|||||-|--||..++..+++++++-+.+ +|.||+++||..+-++ .+.+++.|++|+++..-
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~-RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ-RGATIVYATHIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh-cCcEEEEEeeeccchhhcchhEEEecCCeeeecc
Confidence 9999999999999999999999999999999999998865 5899999999999875 79999999999998743
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-27 Score=199.24 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=111.7
Q ss_pred ceeceeeEEeCCC-EEEEECCCCCcHHHHHHHHh--------CCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHh
Q 024738 53 ILRDCSFSVPSGQ-LWMLLGPNGCGKSTLLKVLA--------GLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 53 iL~~vsl~i~~Ge-~~~l~G~NGsGKSTLlk~i~--------Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
.+-++||++.+|+ +++|+||||||||||||+|+ |..-|....+ .++|..|
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----~~~~~~~----------------- 74 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----SLPVFEN----------------- 74 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----cCcCccE-----------------
Confidence 3568999999995 89999999999999999998 4433322111 0111111
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Q 024738 124 GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE-AVK 202 (263)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~-~l~ 202 (263)
.+..++..+..++..+++|+||+|++.+++++ .+|+++|+|||++|||+..+..+.. .++
T Consensus 75 ------------------~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~ 135 (200)
T cd03280 75 ------------------IFADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE 135 (200)
T ss_pred ------------------EEEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 11122333345566789999999999999884 8999999999999999999999864 667
Q ss_pred HHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 203 NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 203 ~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
++.+ .+.++|++||+.+..++||++++|++|++..++
T Consensus 136 ~l~~--~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 136 ELLE--RGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHh--cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 6643 367999999996556789999999999998774
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=187.75 Aligned_cols=171 Identities=17% Similarity=0.199 Sum_probs=108.8
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE----------EEEcC---ceEEEecCCCCcccccCHHHH
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGH----------VYVKR---PKSFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~----------I~~~~---~~~~v~q~~~~~~~~~tv~~~ 120 (263)
++++.+++.+| +.+|+|||||||||||.+|.-.+-..... |.... .+-..++..... -..+|
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~----~~~~n 88 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN----IQVDN 88 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc----cccCC
Confidence 46667777665 77999999999999999987765322110 11100 111222221100 01111
Q ss_pred HHhhcc------CCCCChHHHHHHHHHHHHHcCC-CcccCCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCC
Q 024738 121 VAFGLG------NLNLTHDEVRSKVAKALDAVGM-SNYLQRPVQTLSGGQKQRVAIAGAL----AEACKVLLLDELTTFL 189 (263)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lAral----~~~p~llllDEPts~L 189 (263)
+.+... ...+.. .+.+..+.- .+..+..+.+||+|||||+.+|+++ +.+|+++|+||||++|
T Consensus 89 ~~~~~~q~~~~~~~~~~~-------~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~L 161 (213)
T cd03277 89 LCQFLPQDRVGEFAKLSP-------IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGM 161 (213)
T ss_pred ceEEEchHHHHHHHhCCh-------HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccC
Confidence 111000 000111 122323322 2345678899999999998877655 4799999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCC--EEEEEeCCE
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYAD--GAFYMEDGK 236 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d--~v~~l~~G~ 236 (263)
|+..+..+++.|.+++++.++.|+|++||++... ++|| ++++|.+|+
T Consensus 162 D~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 162 DPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999986432235899999998764 5655 788999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-25 Score=204.21 Aligned_cols=180 Identities=32% Similarity=0.391 Sum_probs=132.0
Q ss_pred eEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE----Ec-------C-------
Q 024738 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY----VK-------R------- 99 (263)
Q Consensus 38 nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~----~~-------~------- 99 (263)
++..+|+.+. ..|..+= ...+|+++||+||||-||||-+|+|+|.+.|.=|+-. |+ |
T Consensus 79 e~vHRYg~Ng----FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVNG----FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCCc----eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHH
Confidence 4577887542 1222221 3468999999999999999999999999999766442 11 0
Q ss_pred ------ce--EEEecCCCCc--ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH
Q 024738 100 ------PK--SFVFQNPDHQ--VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI 169 (263)
Q Consensus 100 ------~~--~~v~q~~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 169 (263)
.+ ..=+|-.... ..-.+|.+-+.- ..-....+++.++++|.+.+++.+++|||||.||+||
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~---------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aI 224 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK---------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAI 224 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHh---------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHH
Confidence 01 1111110000 000122222110 0011246678999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc-CCEEEEEe
Q 024738 170 AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYME 233 (263)
Q Consensus 170 Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~-~d~v~~l~ 233 (263)
|.|++++++++++|||+|-||...+-...+.++++++. +++||+|.||+..+.+ +|-|.++.
T Consensus 225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~--~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED--GKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc--CCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999999999864 5799999999999985 89888886
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-25 Score=207.63 Aligned_cols=186 Identities=27% Similarity=0.389 Sum_probs=147.0
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~ 109 (263)
.-|.++||-.--++.+ .++..++|+|++|-.+.|+||||||||+|+|+|.|+.|...|...+.. ++-|+||.|.
T Consensus 480 ~gI~lenIpvItP~~~----vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPY 555 (728)
T KOG0064|consen 480 NGIILENIPVITPAGD----VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPY 555 (728)
T ss_pred cceEEecCceeccCcc----eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCc
Confidence 3588999988776643 578999999999999999999999999999999999999999887753 5889999885
Q ss_pred CcccccCHHHHHHhhcc-----CCCCChHHHHHHHHHHHHHcCCCcccCCC---------CCCCChHHHHHHHHHHHHhh
Q 024738 110 HQVVMPTVEADVAFGLG-----NLNLTHDEVRSKVAKALDAVGMSNYLQRP---------VQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LSgGqkqRv~lAral~~ 175 (263)
. ...|.+|.+.++-. ..++.. +.+..+|+.+.|+..+.+- -..||||||||+++||.+.+
T Consensus 556 m--s~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH 629 (728)
T KOG0064|consen 556 M--SGGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH 629 (728)
T ss_pred c--CcCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc
Confidence 3 34588888776521 223333 2344555555554443332 25899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
+|++-+|||-||+..++....+.+..++. |.+.|-+||++...++-..++-+
T Consensus 630 rPkyalLDEcTsAvsidvE~~i~~~ak~~-----gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 630 RPKYALLDECTSAVSIDVEGKIFQAAKDA-----GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred CcchhhhhhhhcccccchHHHHHHHHHhc-----CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999888888887764 68999999999998765554444
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=192.10 Aligned_cols=179 Identities=27% Similarity=0.421 Sum_probs=144.7
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEEcCc--eEEEecCCCCcccccCHHHH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--------LKPTNGHVYVKRP--KSFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~p~~G~I~~~~~--~~~v~q~~~~~~~~~tv~~~ 120 (263)
..+|+|+||++++|++++|+|+|||||||||++|+|. ++|++|.|.+... -+.+|-.....+...|+.+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 3589999999999999999999999999999999995 5799999987543 23455443322222255555
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHcCCCc--ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 024738 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSN--YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198 (263)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~ 198 (263)
+.-- .+ + ...+.++|.+.|+.+ +..+++++||.|||.|+.||++++..|.+++.||-.|.||+.+...+.
T Consensus 476 l~s~---tG----D-~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVA 547 (593)
T COG2401 476 LRSK---TG----D-LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVA 547 (593)
T ss_pred Hhhc---cC----c-hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHH
Confidence 4321 11 1 134567899999974 456788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEE
Q 024738 199 EAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIV 238 (263)
Q Consensus 199 ~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~ 238 (263)
.-|.+++++ .|.|++++||+.+..+ . -|.++.+.-|+..
T Consensus 548 rkiselaRe-~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 548 RKISELARE-AGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHHH-hCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 999999875 4799999999999985 4 7999998877654
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-24 Score=174.99 Aligned_cols=140 Identities=26% Similarity=0.317 Sum_probs=103.3
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHH
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDE 134 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~ 134 (263)
...++.+.++.+++|+|||||||||+++.+....-...|.+.....+ |.. ...+.+ .+.+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~----~~g---~~~~~~--~~~~----------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGV----KAG---CIVAAV--SAEL----------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcc----cCC---Ccceee--EEEE-----------
Confidence 44455666667999999999999999999877665555544331111 000 000000 0000
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 024738 135 VRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210 (263)
Q Consensus 135 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~ 210 (263)
+ ....+||+||+||++||++|+. +|+++|+|||++|+|+..+..+.+.+.++..+ +
T Consensus 72 -------------i-----~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~ 131 (162)
T cd03227 72 -------------I-----FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--G 131 (162)
T ss_pred -------------e-----hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--C
Confidence 0 0001299999999999999987 78999999999999999999999999987653 5
Q ss_pred cEEEEEccCcchhhcCCEEEEEeC
Q 024738 211 VTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 211 ~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
.++|++||+.+....+|+++.|..
T Consensus 132 ~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 132 AQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred CEEEEEcCCHHHHHhhhhEEEEEE
Confidence 799999999999888999999964
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-24 Score=178.37 Aligned_cols=74 Identities=27% Similarity=0.309 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 159 LSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 159 LSgGqkqRv~lAral~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
||+||+||++|||+++ .+|+++|+|||+++||+..+..+.+.|.++++. |.++|++||+.+.+..+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~--g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH--TSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998643 5799999999988888999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=197.46 Aligned_cols=121 Identities=28% Similarity=0.402 Sum_probs=106.1
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 138 KVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 138 ~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
+..+.|..+||.. .+.++..+|||||.|||-||.-|.... -++||||||.||-....+++++.|.++... |-||
T Consensus 801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~--GnTV 878 (935)
T COG0178 801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK--GNTV 878 (935)
T ss_pred HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC--CCEE
Confidence 3345677889974 588999999999999999999999887 999999999999999999999999999864 6799
Q ss_pred EEEccCcchhhcCCEEEEEe------CCEEEEecChhhHHhhhhhhhhhhhhh
Q 024738 214 LWVTHRLEELEYADGAFYME------DGKIVMQADGVSILNFIKSRQSSYIER 260 (263)
Q Consensus 214 iivtH~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~~~~~~~~~~~ 260 (263)
|++.|+++.++.||+|+-|- .|+|++.|+|+++.+...+....|++.
T Consensus 879 iVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk~ 931 (935)
T COG0178 879 IVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931 (935)
T ss_pred EEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHHH
Confidence 99999999999999999984 689999999999987655555667643
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-24 Score=186.44 Aligned_cols=152 Identities=21% Similarity=0.225 Sum_probs=112.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceE-EEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS-FVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~-~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+.+|++|++.++++++|.||||+|||||+++++- +.+-.++| |+|.+... .
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~~~la~~g~~vpa~~~~---~---------------- 70 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------IVLMAQIGCFVPCDSAD---I---------------- 70 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------HHHHHHhCCCcCcccEE---E----------------
Confidence 58899999999999999999999999999999982 11111222 33332110 0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHH
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL--AEACKVLLLDEL---TTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~llllDEP---ts~LD~~~~~~l~~~l~~l~ 205 (263)
..+++++..+++.+.. ...+|.||+|++.+++++ +.+|+++||||| |++||+...... .++.+.
T Consensus 71 ------~~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~ 139 (222)
T cd03285 71 ------PIVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIA 139 (222)
T ss_pred ------eccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHH
Confidence 0122345566766443 578999999999999999 899999999999 999999988543 334443
Q ss_pred hcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 206 GDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
++ .+.++|++||+.+..++||++..+++|++...+.
T Consensus 140 ~~-~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 140 TQ-IKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hc-CCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 32 3579999999744457899999999999977664
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=213.51 Aligned_cols=120 Identities=25% Similarity=0.277 Sum_probs=105.9
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 138 KVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEA---CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 138 ~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~---p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
+..+.|..+||.. .+.++..+|||||.||+-||.-|..+ +.++||||||.||++.....+++.|.++... |.||
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~--g~tv 1755 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL--GHSV 1755 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCeE
Confidence 3456788999985 58999999999999999999999875 7999999999999999999999999999754 6799
Q ss_pred EEEccCcchhhcCCEEEEEe------CCEEEEecChhhHHhhhhhhhhhhhh
Q 024738 214 LWVTHRLEELEYADGAFYME------DGKIVMQADGVSILNFIKSRQSSYIE 259 (263)
Q Consensus 214 iivtH~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
|+|.||++.++.||+++-|. .|+|++.|+|+++.+...+....|+.
T Consensus 1756 ivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~~l~ 1807 (1809)
T PRK00635 1756 IYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTYMC 1807 (1809)
T ss_pred EEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHHHhc
Confidence 99999999999999999995 57999999999998865566666653
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=184.18 Aligned_cols=76 Identities=26% Similarity=0.271 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 158 TLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 158 ~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
.|||||+||++||++++. +|+++|+||||++||+..+..+.+.|+++.+ +.|+|++||+++....||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~---~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR---SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEechHHHHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999998753 479999999998778999999998
Q ss_pred CCE
Q 024738 234 DGK 236 (263)
Q Consensus 234 ~G~ 236 (263)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-24 Score=193.98 Aligned_cols=206 Identities=24% Similarity=0.300 Sum_probs=146.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcCceEEEecCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKRPKSFVFQNPD 109 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~~~~~v~q~~~ 109 (263)
+.|.++|.+.+-.++ ..+.|.||.|-.|..|+|+||||-||||||+-|+.- --|..=.|.+..+-..+...+.
T Consensus 263 ~DIKiEnF~ISA~Gk-----~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 263 MDIKIENFDISAQGK-----LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred ccceeeeeeeecccc-----eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 459999999887654 589999999999999999999999999999999863 2233333443321100000000
Q ss_pred Cc------------------------ccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHH
Q 024738 110 HQ------------------------VVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQ 163 (263)
Q Consensus 110 ~~------------------------~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq 163 (263)
.. ....|+.+.+.-.+ ............+++.+|.-+|++ +..+++...+|||.
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 00 00002222111000 000011112245677788889997 45678889999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
|.||+|||||...|-+|.|||||+.||..+..++-+.|.-+. +|++|||||..++. .|..||.+++.++.++-.
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk-----KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrG 492 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK-----KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRG 492 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh-----heeEEEecccchHHHHHHHHhhhhhhhhhhhcc
Confidence 999999999999999999999999999999999999998762 59999999999995 799999999998866544
Q ss_pred hhhHH
Q 024738 243 GVSIL 247 (263)
Q Consensus 243 ~~~~~ 247 (263)
...++
T Consensus 493 NY~~F 497 (807)
T KOG0066|consen 493 NYTLF 497 (807)
T ss_pred hHHHH
Confidence 44444
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-23 Score=177.34 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=106.3
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChH
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD 133 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~ 133 (263)
-..++++.+|++++|+||||||||||||+|++.. .+..|. |++.......+ .+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~--------~~~~~~~~i~~----~d-------------- 73 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC--------FVPAESASIPL----VD-------------- 73 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC--------CccccccccCC----cC--------------
Confidence 4456667789999999999999999999999543 222231 22221100000 00
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCcE
Q 024738 134 EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-VKNLLGDSGEVT 212 (263)
Q Consensus 134 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~-l~~l~~~~~~~t 212 (263)
+.+..++..+......+.+|.+++| +..+.+++.+|+++|+||||+|+|+..+..+... +..+.+ .+.+
T Consensus 74 -------qi~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~--~~~~ 143 (202)
T cd03243 74 -------RIFTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE--KGCR 143 (202)
T ss_pred -------EEEEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCe
Confidence 0111122222233445667777776 6666788899999999999999999988877654 555543 3679
Q ss_pred EEEEccCcchhhcCCEEEEEeCCEEEEecChhh
Q 024738 213 ALWVTHRLEELEYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 213 iiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
+|++||+.+.+..|+++..+.++++...++..+
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence 999999998888889999999999988876533
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-22 Score=201.90 Aligned_cols=130 Identities=28% Similarity=0.411 Sum_probs=109.7
Q ss_pred CHHHHHHhhccCCCCChH----------HHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhCC--CEEEE
Q 024738 116 TVEADVAFGLGNLNLTHD----------EVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEAC--KVLLL 182 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~llll 182 (263)
+|.+.+.| +........ ++.+++ ++++.+||..+ +++++.+|||||+|||+||+||+.+| +++||
T Consensus 438 ~v~~~~~~-~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llIL 515 (943)
T PRK00349 438 SIGEALEF-FENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVL 515 (943)
T ss_pred cHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEe
Confidence 77777766 333333321 333444 36888999876 79999999999999999999999997 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
||||+|||+..+..+++.|+++.+ .|.|||+|+|+++++..||+|++| ++|++++.|+++++...
T Consensus 516 DEPtagLd~~~~~~L~~~L~~L~~--~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 516 DEPSIGLHQRDNDRLIETLKHLRD--LGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 999999999999999999999864 368999999999998789999999 99999999999988653
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=171.79 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=102.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+++|++|+. |++++|+||||||||||+|+|+|...- ..|. .+.. ..+++|. ...+...++.+|+.++...
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a-~~~~~q~-~~l~~~~~~~d~l~~~~s~--- 86 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCA-SSFELPP-VKIFTSIRVSDDLRDGISY--- 86 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEec-CccCccc-ceEEEeccchhccccccCh---
Confidence 4778887765 799999999999999999999986531 2232 1211 2466773 3233333888988775422
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCC
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE-AVKNLLGDSG 209 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~-~l~~l~~~~~ 209 (263)
...+. +++.++++.+++ .+|+++|+||||+|+|+..+..+.. ++.++.+ .
T Consensus 87 ~~~e~-~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~--~ 137 (199)
T cd03283 87 FYAEL-RRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN--K 137 (199)
T ss_pred HHHHH-HHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH--C
Confidence 12333 567778887763 7999999999999999999887654 6777653 3
Q ss_pred CcEEEEEccCcchhh---cCCEEEEE
Q 024738 210 EVTALWVTHRLEELE---YADGAFYM 232 (263)
Q Consensus 210 ~~tiiivtH~~~~~~---~~d~v~~l 232 (263)
+.|+|++||+++.+. ..+++-.+
T Consensus 138 ~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 138 NTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 689999999999874 24555544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-22 Score=202.47 Aligned_cols=196 Identities=27% Similarity=0.407 Sum_probs=161.4
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEEcC----------ceEEEecCCCCcccccCH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP---TNGHVYVKR----------PKSFVFQNPDHQVVMPTV 117 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---~~G~I~~~~----------~~~~v~q~~~~~~~~~tv 117 (263)
..+|+|+|.-+++|+.+.++||-||||||||+.++|-+.- ..|+|.++| .++|..|+....+.+ ||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l-TV 206 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL-TV 206 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee-EE
Confidence 4699999999999999999999999999999999997643 356898875 368999986544444 99
Q ss_pred HHHHHhhccCCC-------CChHHHH-HHHHHHHHHcCCCccc-----CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 118 EADVAFGLGNLN-------LTHDEVR-SKVAKALDAVGMSNYL-----QRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 118 ~~~~~~~~~~~~-------~~~~~~~-~~~~~~l~~~~l~~~~-----~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
++-+.|.++..+ ..+.+.. ...+.+++.+||+.-. |...+..|||||+||.+|-+++.+++++.+||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 998888654321 2222221 2456789999997644 44567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch--hhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE--LEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~--~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|.|||..+.-++++.|+++++.. +.|.+++=|.... .+..|.|++|.+|++++.|+.+++..
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~-~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHIT-GATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhh-cceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999998754 5788888888765 47899999999999999999988765
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=196.80 Aligned_cols=105 Identities=30% Similarity=0.368 Sum_probs=96.7
Q ss_pred HHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 142 ALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEAC--KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 142 ~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
.+..+||..+ +++++.+|||||+|||+||+||+.+| +++||||||+|||+..+..+++.|+++.++ |.|||+|+|
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~--G~TVIvVeH 547 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL--GNTVIVVEH 547 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC--CCEEEEEEC
Confidence 4677899765 79999999999999999999999986 899999999999999999999999998653 689999999
Q ss_pred CcchhhcCCEEEEE------eCCEEEEecChhhHHh
Q 024738 219 RLEELEYADGAFYM------EDGKIVMQADGVSILN 248 (263)
Q Consensus 219 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 248 (263)
|++++..||++++| ++|+|++.|+++++..
T Consensus 548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 548 DEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred CHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 99998899999999 8999999999988854
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=164.58 Aligned_cols=138 Identities=23% Similarity=0.292 Sum_probs=100.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceE-EEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS-FVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~-~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+.+|++|++++|++++|+||||+|||||+|+++++. +..++| ++|-. .... ++.++
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------~la~~G~~vpa~---~~~l-~~~d~---------- 74 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------IMAQIGCFVPAE---YATL-PIFNR---------- 74 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------HHHHcCCCcchh---hcCc-cChhh----------
Confidence 5899999999999999999999999999999999874 111222 11111 1111 22222
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCC
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI-EAVKNLLGDSG 209 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~-~~l~~l~~~~~ 209 (263)
++..++..+...+..+.+|.||+|+ ..+.+++.+|+++|+|||++|+|+.....+. ..+..+.+.
T Consensus 75 -----------I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-- 140 (204)
T cd03282 75 -----------LLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-- 140 (204)
T ss_pred -----------eeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--
Confidence 2344455555667788999999975 5556688999999999999999997765554 455555432
Q ss_pred CcEEEEEccCcchhhc
Q 024738 210 EVTALWVTHRLEELEY 225 (263)
Q Consensus 210 ~~tiiivtH~~~~~~~ 225 (263)
+.++|++||+.+.++.
T Consensus 141 ~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 141 ESTVFFATHFRDIAAI 156 (204)
T ss_pred CCEEEEECChHHHHHH
Confidence 6899999999998753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-20 Score=168.14 Aligned_cols=176 Identities=28% Similarity=0.422 Sum_probs=138.3
Q ss_pred cceeceeeEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEEcCceEEEecCCCCcccccCHHHHHHhhc
Q 024738 52 PILRDCSFSVPSG-----QLWMLLGPNGCGKSTLLKVLAGLLKPTNG-HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGL 125 (263)
Q Consensus 52 ~iL~~vsl~i~~G-----e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~ 125 (263)
.-+-++.|.|..| |++..+|+||.|||||+++++|.++|++| +|-. -.++|=||.... -+..||++.+.--.
T Consensus 350 k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-lnVSykpqkisp-K~~~tvR~ll~~kI 427 (592)
T KOG0063|consen 350 KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-LNVSYKPQKISP-KREGTVRQLLHTKI 427 (592)
T ss_pred eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-cceeccccccCc-cccchHHHHHHHHh
Confidence 4678899999988 57899999999999999999999999976 3322 247888886542 23347877543221
Q ss_pred cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 126 GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
...... ..-+.+.++-+.+++..++.+..|||||+|||+||.+|-..+++++.|||.+-||.+.+...-..++++.
T Consensus 428 r~ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfi 503 (592)
T KOG0063|consen 428 RDAYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI 503 (592)
T ss_pred HhhhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHH
Confidence 111111 2345567788888888999999999999999999999999999999999999999999988888888754
Q ss_pred hcCCCcEEEEEccCcchhhc-CCEEEEEeC
Q 024738 206 GDSGEVTALWVTHRLEELEY-ADGAFYMED 234 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~~~-~d~v~~l~~ 234 (263)
-.. ++|-.+|.||.-.+.+ |||+++.+.
T Consensus 504 lha-kktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 504 LHA-KKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred Hhc-cchhhhhhhHHHHHHhhcceeEEEec
Confidence 332 4688999999888864 999998874
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=154.78 Aligned_cols=76 Identities=26% Similarity=0.342 Sum_probs=63.7
Q ss_pred CCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hc
Q 024738 156 VQTLSGGQKQRVAIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EY 225 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~ 225 (263)
...+|+||+|+++||++|+ .+|+++|+||||++||+..+..+++.+.++ + .+++++|+...+ .+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~-----~-q~ii~~~~~~~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR-----V-QTFVTTTDLADFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC-----C-CEEEEeCCchhccch
Confidence 4568999999999999985 799999999999999999999999998764 1 356666666665 55
Q ss_pred C---CEEEEEeCCEE
Q 024738 226 A---DGAFYMEDGKI 237 (263)
Q Consensus 226 ~---d~v~~l~~G~i 237 (263)
| ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-20 Score=154.56 Aligned_cols=126 Identities=25% Similarity=0.323 Sum_probs=84.5
Q ss_pred EEEEECCCCCcHHHHHHHHh-CCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLA-GLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD 144 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~-Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 144 (263)
+++|+||||+|||||+|.++ ..+.+..|. |+|-.. ..++. ..+++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~--------~v~a~~------------~~~~~-------------~d~il~ 47 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGS--------FVPAES------------AELPV-------------FDRIFT 47 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCC--------Ceeehh------------eEecc-------------cceEEE
Confidence 36899999999999999998 333233332 222211 00000 012234
Q ss_pred HcCCCcccCCCCCCCChHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCcEEEEEccCcc
Q 024738 145 AVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--ACKVLLLDELTTFLDESDQFGVI-EAVKNLLGDSGEVTALWVTHRLE 221 (263)
Q Consensus 145 ~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~llllDEPts~LD~~~~~~l~-~~l~~l~~~~~~~tiiivtH~~~ 221 (263)
.++..+..++..++||+|++| +++++.. +|+++|+|||++|+|+.....+. .+++.+.+ ..+.++|++||+.+
T Consensus 48 ~~~~~d~~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~ 123 (185)
T smart00534 48 RIGASDSLAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHE 123 (185)
T ss_pred EeCCCCchhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHH
Confidence 455556667788899999887 4444444 99999999999999999877765 45555543 22579999999997
Q ss_pred hhhcCCE
Q 024738 222 ELEYADG 228 (263)
Q Consensus 222 ~~~~~d~ 228 (263)
..+.||+
T Consensus 124 l~~~~~~ 130 (185)
T smart00534 124 LTKLADE 130 (185)
T ss_pred HHHHhhc
Confidence 6666664
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=150.09 Aligned_cols=153 Identities=24% Similarity=0.202 Sum_probs=94.8
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEE--cCceEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYV--KRPKSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~--~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
.+.+|++|+..+ ++++|+||||||||||||+++++.-. ..|.... ...++++.|-. ..+ ++.+++..+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~---~~~-~~~~~ls~g---- 89 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF---TRI-GASDDLAGG---- 89 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe---ccC-CchhhhccC----
Confidence 478999999887 99999999999999999999875311 1121110 01122222210 011 222222211
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHH
Q 024738 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL--AEACKVLLLDEL---TTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~llllDEP---ts~LD~~~~~~l~~~l~~ 203 (263)
.|.=+..+..+++++ +.+|+++||||| |+++|.... ...++..
T Consensus 90 ------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~ 137 (216)
T cd03284 90 ------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEY 137 (216)
T ss_pred ------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHH
Confidence 122233333455554 469999999999 888887653 2233333
Q ss_pred HHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 204 LLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
+.+. .+.++|++||+.+..+.+|++..+++|++...+..+++
T Consensus 138 l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 138 LHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 3322 25799999999876678888777788888776665554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=145.35 Aligned_cols=135 Identities=22% Similarity=0.212 Sum_probs=88.4
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEEcC--ceEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKPTNGHVYVKR--PKSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p~~G~I~~~~--~~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
+=+|+++.=..+.+++|+||||+|||||||.++. ++ +..|...+.. .++|..|.........++.++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~-------- 88 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSG-------- 88 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhc--------
Confidence 3455554321227999999999999999999983 33 5667655432 344444432100000011110
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc
Q 024738 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV-IEAVKNLLGD 207 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l-~~~l~~l~~~ 207 (263)
+ +.+ .-+.||+++|++++.+|+++|+|||++|+|+.....+ ...++++.+.
T Consensus 89 -------------------~--------S~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 89 -------------------Q--------SAF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred -------------------c--------chH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 0 111 3467999999999999999999999999999764444 5677777543
Q ss_pred -CCCcEEEEEccCcchhh
Q 024738 208 -SGEVTALWVTHRLEELE 224 (263)
Q Consensus 208 -~~~~tiiivtH~~~~~~ 224 (263)
..+.++|++||+.+.++
T Consensus 141 ~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 141 GPECPRVIVSTHFHELFN 158 (213)
T ss_pred CCCCcEEEEEcChHHHHH
Confidence 12358999999999875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-18 Score=171.68 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=103.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCC-CEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEEcCceEEEecCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSG-QLWMLLGPNGCGKSTLLKVLAGL-LKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl-~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
.+.++++..-+-.. .-.-.+|+++..+ ++++|+||||+|||||||+|+|+ +.+..| .++|.....
T Consensus 295 ~i~l~~~rhPll~~-----~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------~~Vpa~~~~ 361 (771)
T TIGR01069 295 KIILENARHPLLKE-----PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------IPIPANEHS 361 (771)
T ss_pred CEEEccccCceecC-----CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------CCccCCccc
Confidence 47777665432110 0122478889887 99999999999999999999998 444444 144443311
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD 190 (263)
. + ...+++.. .+ +.++......++||+||++++.|++++ .+|+++|+|||++|+|
T Consensus 362 ~--~-~~~d~i~~-----~i----------------~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD 416 (771)
T TIGR01069 362 E--I-PYFEEIFA-----DI----------------GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTD 416 (771)
T ss_pred c--c-cchhheee-----ec----------------ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCC
Confidence 1 1 11121110 01 111122345778999999999998876 7999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 191 ESDQFGVI-EAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 191 ~~~~~~l~-~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
+.....+. .++..+.. .|.++|++||+.+...
T Consensus 417 ~~eg~ala~aiLe~l~~--~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 417 PDEGSALAISILEYLLK--QNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHH
Confidence 99999884 56666643 3679999999988743
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=140.95 Aligned_cols=169 Identities=26% Similarity=0.377 Sum_probs=99.3
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHh-CCC--CCC-------ceEEEE-c-------CceEEEecCCCCcccc--
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA-GLL--KPT-------NGHVYV-K-------RPKSFVFQNPDHQVVM-- 114 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~--~p~-------~G~I~~-~-------~~~~~v~q~~~~~~~~-- 114 (263)
+...+.+.+ .+++|+|||||||||++.+|. .+- ... +.-|.. . ..+...+++.......
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 566777765 499999999999999999993 322 110 111111 0 1133344433211000
Q ss_pred c--CHHHHHHh-hccCCCCC-hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCC
Q 024738 115 P--TVEADVAF-GLGNLNLT-HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA----EACKVLLLDELT 186 (263)
Q Consensus 115 ~--tv~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~----~~p~llllDEPt 186 (263)
. .+...+.- +-..+..+ .....+.+.+.+..+.+... .||||||.+++||.-|+ .+++++|||||.
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd 168 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVD 168 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccc
Confidence 0 00000000 00000000 01112445566776666533 99999999999997664 578999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
++||...+..+.++|+++.+ ..-+|++||+...+..||+.+.+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~---~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 169 AALDEQNRKRLADLLKELSK---QSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp TTS-HHHHHHHHHHHHHHTT---TSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred cccccccccccccccccccc---cccccccccccccccccccccccc
Confidence 99999999999999999753 357899999999999999887663
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=135.95 Aligned_cols=143 Identities=19% Similarity=0.238 Sum_probs=85.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD 144 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 144 (263)
..++|+||||||||||+++|+|+++|++|+|.++++.-.+..+ -. .+.-.. .......
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~---------~~-ei~~~~--~~~~q~~---------- 169 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDE---------RS-EIAGCV--NGVPQHD---------- 169 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchh---------HH-HHHHHh--ccccccc----------
Confidence 5789999999999999999999999999999998742111100 01 111000 0000000
Q ss_pred HcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch--
Q 024738 145 AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-- 222 (263)
Q Consensus 145 ~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~-- 222 (263)
++. +..-|.+=.|.....+.+.+++|+++|+|||++ .+.+..++..+ + .|.++|++||+...
T Consensus 170 -~~~------r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~--~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 170 -VGI------RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H--AGVSIIATAHGRDVED 233 (270)
T ss_pred -ccc------cccccccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h--CCCEEEEEechhHHHH
Confidence 000 000111111111123334447999999999974 23344455544 2 36899999997665
Q ss_pred h------------hcCCEEEEEeCCEEEEecChhhHH
Q 024738 223 L------------EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 223 ~------------~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+ ..+||+++|++|+ ..|++++++
T Consensus 234 ~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 234 LYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 3 3589999999886 666666553
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-16 Score=144.47 Aligned_cols=169 Identities=28% Similarity=0.418 Sum_probs=119.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE----cCceEEEecCCCCccccc-CHHHHHHh------------h
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----KRPKSFVFQNPDHQVVMP-TVEADVAF------------G 124 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~----~~~~~~v~q~~~~~~~~~-tv~~~~~~------------~ 124 (263)
.+|++.+++|.||-||||-+++++|-++|.-|.--- ..-++|--- ..++-++. .+.+|+.- +
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frg-selq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRG-SELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhh-HHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 589999999999999999999999999997764321 000110000 00000000 00111100 0
Q ss_pred ccC---CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024738 125 LGN---LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201 (263)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l 201 (263)
.+. ..+.....++...++++.+.|...+++-+.+||||+.||.+||.+.+.+.++.++|||.+-||...+......|
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI 256 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence 000 00011111223456778888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEccCcchhhc-CCEEEEEe
Q 024738 202 KNLLGDSGEVTALWVTHRLEELEY-ADGAFYME 233 (263)
Q Consensus 202 ~~l~~~~~~~tiiivtH~~~~~~~-~d~v~~l~ 233 (263)
+.+... ..=||+|.||+..+.+ .|-+.++.
T Consensus 257 Rsl~~p--~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 257 RSLINP--DRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred HHhhCC--CCeEEEEEeechHHHhhhcceeEEe
Confidence 998754 3579999999999985 78887776
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=131.62 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=88.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC-CCCCCceEEEEcCc--eEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG-LLKPTNGHVYVKRP--KSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G-l~~p~~G~I~~~~~--~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
.+.+|++|++.+|++++|+||||+||||++|++++ .+.+..|...+... +++..|- +..+ ...+++.-
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i---~~~~-~~~d~~~~----- 89 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV---LTRM-GASDSIQH----- 89 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE---EEEe-cCcccccc-----
Confidence 48899999999999999999999999999999999 66788887655432 1211110 0000 00111110
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc
Q 024738 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV-IEAVKNLLGD 207 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l-~~~l~~l~~~ 207 (263)
-.+.++ .|-+++.-+..-+.+|+++|+|||++|.|+.....+ ..++..+.+.
T Consensus 90 --------------------------~~StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~ 142 (222)
T cd03287 90 --------------------------GMSTFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE 142 (222)
T ss_pred --------------------------ccchHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc
Confidence 001111 122233333334568999999999999886666654 4566666543
Q ss_pred CCCcEEEEEccCcchhh
Q 024738 208 SGEVTALWVTHRLEELE 224 (263)
Q Consensus 208 ~~~~tiiivtH~~~~~~ 224 (263)
.+.++|++||+.+..+
T Consensus 143 -~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 143 -KKCLVLFVTHYPSLGE 158 (222)
T ss_pred -cCCeEEEEcccHHHHH
Confidence 3579999999999854
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=152.32 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=98.1
Q ss_pred eeeEEe-CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceE-EEecCCCCcccccCHHHHHHhhccCCCCChHH
Q 024738 57 CSFSVP-SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS-FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDE 134 (263)
Q Consensus 57 vsl~i~-~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~-~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~ 134 (263)
.++.+. .+.++.|+|||++||||+||.++... +-.+.| +||-.... .. ++.+++
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~--------~maq~G~~vpa~~~~--~i-~~~~~i------------- 374 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA--------LMAKSGLPIPANEPS--EI-PVFKEI------------- 374 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHH--------HHHHhCCCcccCCCc--cc-cccceE-------------
Confidence 344444 45789999999999999999996431 111122 34443110 00 111221
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCcEE
Q 024738 135 VRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE-AVKNLLGDSGEVTA 213 (263)
Q Consensus 135 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~-~l~~l~~~~~~~ti 213 (263)
+..+|-.+...+..++||+||+|++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.. .|.++
T Consensus 375 --------~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~v 443 (782)
T PRK00409 375 --------FADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKI 443 (782)
T ss_pred --------EEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEE
Confidence 1122333344567889999999999999988 8999999999999999999888865 4555543 36799
Q ss_pred EEEccCcchhhc-CCEEEEEeCCEEEE
Q 024738 214 LWVTHRLEELEY-ADGAFYMEDGKIVM 239 (263)
Q Consensus 214 iivtH~~~~~~~-~d~v~~l~~G~i~~ 239 (263)
|++||+.+...+ +++..++ ++.+..
T Consensus 444 IitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 444 IATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred EEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 999999888754 5544433 445444
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=130.80 Aligned_cols=167 Identities=19% Similarity=0.249 Sum_probs=103.4
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhh-----ccCCCCChH
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFG-----LGNLNLTHD 133 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~-----~~~~~~~~~ 133 (263)
+.+.+|+.++|+||+|+|||||++.|++......+++.. +.++-+++.. ++.+.+.-- +...+.+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~---~v~vI~er~~-----ev~el~~~I~~~~v~~~~~~~~~ 82 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYL---IVLLIDERPE-----EVTDMQRSVKGEVIASTFDEPPE 82 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEE---EEEEccCCCc-----cHHHHHHHhccEEEEecCCCCHH
Confidence 588999999999999999999999999988765443321 1122232210 111111000 000111110
Q ss_pred HH---HHHHHHHHHH---cCC----------------CcccCCCCCCCChHH--------HHHHHHHHHHhhCCCEEEEe
Q 024738 134 EV---RSKVAKALDA---VGM----------------SNYLQRPVQTLSGGQ--------KQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 134 ~~---~~~~~~~l~~---~~l----------------~~~~~~~~~~LSgGq--------kqRv~lAral~~~p~llllD 183 (263)
.. ...+.+.++. .|- .+........+|||+ +||+++||++..++++++|
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 00 0001111111 111 111122345679999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEE
Q 024738 184 ELTTFLDESDQFG-VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVM 239 (263)
Q Consensus 184 EPts~LD~~~~~~-l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~ 239 (263)
||+.+|..+... ++ +.++.. .+.|.|+.||++.....+|.|.+|+.|++..
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr~~ 213 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTRKE 213 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCccc
Confidence 999999544432 33 344322 2468999999999999999999999999843
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=123.71 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=44.6
Q ss_pred CCCChH--HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 024738 157 QTLSGG--QKQRVAIAGALAEACKVLLLDELT-----TFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 157 ~~LSgG--qkqRv~lAral~~~p~llllDEPt-----s~LD~~~~~~l~~~l~~l~~ 206 (263)
+..||+ |++++.|||+++.+|+++++|||| ++||+..++.+.+.++++++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 334444 999999999999999999999999 99999999999999999853
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=136.94 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=105.8
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC-CCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP-DHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~-~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+++++ |++.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.+.-+--..+. ............+.+ ....+.
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~v-v~~~~~ 224 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVV-VATSDQ 224 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEE-EECCCC
Confidence 589999 99999999999999999999999999999999999887643211000000 000000000000000 000000
Q ss_pred ChH------HHHHHHHHHHHHcCCCcccCCCCCCCC-hHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHH
Q 024738 131 THD------EVRSKVAKALDAVGMSNYLQRPVQTLS-GGQKQRVAIAGALAEACKVLLLDEL--TTFLDESDQFGVIEAV 201 (263)
Q Consensus 131 ~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS-gGqkqRv~lAral~~~p~llllDEP--ts~LD~~~~~~l~~~l 201 (263)
+.- ..--.+.+.+..-|-+-++ -..+++ --|.+| .|+ +.+.|| |+|+|+.....+.+++
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr~~g~~Vll--~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G~dp~~~~~l~~ll 292 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFRDQGLNVML--MMDSVTRVAMAQR-EIG---------LAVGEPPTTKGYTPSVFAILPKLL 292 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEE--EEeChHHHHHHHH-HHH---------HhcCCCCccccCCHHHHHHHHHHH
Confidence 000 0011122233322322110 011222 111111 011 123464 7899999999999999
Q ss_pred HHHHhcCCCc-----EEEEEccCcchhhcCCEEEEEeCCEEEEecChhh
Q 024738 202 KNLLGDSGEV-----TALWVTHRLEELEYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 202 ~~l~~~~~~~-----tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
.++....+|. ||++.+||+++ .+||++..|.+|+++.+++..+
T Consensus 293 er~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 293 ERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 9875423464 99999999985 7899999999999999998754
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-15 Score=144.54 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=70.7
Q ss_pred CCCCCCChHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 154 RPVQTLSGGQKQRVAIAGALA----------EACKVLLLDELT-TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAral~----------~~p~llllDEPt-s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
.++..|||||+||++||+||+ .+|+++|||||| ++||+..+..+.+.|.++ . +.|||++||+.+.
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~---~~~iiiish~~~~ 539 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K---DTNVFVISHKDHD 539 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C---CCeEEEEECchhc
Confidence 356899999999999999987 599999999998 789999999999999987 2 5799999999877
Q ss_pred hhcCCEEEEEeC-CEE
Q 024738 223 LEYADGAFYMED-GKI 237 (263)
Q Consensus 223 ~~~~d~v~~l~~-G~i 237 (263)
...||++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 778999999986 544
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-15 Score=143.42 Aligned_cols=77 Identities=23% Similarity=0.278 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE
Q 024738 157 QTLSGGQKQRVAIAGALAEA----CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM 232 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~~~----p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l 232 (263)
..|||||+||++||++++.. |++||||||++|||+..+..+.+.|+++.+ +.+||+|||++..+..||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~---~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE---RHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEEChHHHHHhcCeEEEE
Confidence 37899999999999999985 699999999999999999999999999853 57999999999988899999999
Q ss_pred eCCE
Q 024738 233 EDGK 236 (263)
Q Consensus 233 ~~G~ 236 (263)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=150.40 Aligned_cols=86 Identities=23% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCcccCCCCCCCChHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 024738 148 MSNYLQRPVQTLSGGQKQRVAIAGALAE----------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217 (263)
Q Consensus 148 l~~~~~~~~~~LSgGqkqRv~lAral~~----------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivt 217 (263)
+....++++.+|||||++||+||+||+. +|++||+||||++||+.+...+++.|.++.. .|.+|+|||
T Consensus 940 ~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~--~g~~i~iis 1017 (1042)
T TIGR00618 940 AYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE--GSKMIGIIS 1017 (1042)
T ss_pred CCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEe
Confidence 3445677899999999999999999986 7999999999999999999999999999864 368999999
Q ss_pred cCcchh-hcCCEEEEEeCC
Q 024738 218 HRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 218 H~~~~~-~~~d~v~~l~~G 235 (263)
|++++. .+||+|+|++.+
T Consensus 1018 H~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1018 HVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred CcHHHHHhhCCEEEEEECC
Confidence 999997 579999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-15 Score=124.44 Aligned_cols=151 Identities=23% Similarity=0.279 Sum_probs=96.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
.++|+|+||||||||++.+++.+.+ .| +.+ .+|+.|+... .... ..+... ...... ...+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~---~g~~~~~~~~--~~~~----~~~~~~--~~~~~~-----~~~l~~ 63 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKV---GGFYTEEVRE--GGKR----IGFKII--DLDTGE-----EGILAR 63 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeE---EEEEcHHHHh--cCCc----cceEEE--EcCCCC-----eEEccc
Confidence 4789999999999999999887655 45 221 3455443110 0000 001010 000000 011223
Q ss_pred cCC-C-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc
Q 024738 146 VGM-S-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE--LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221 (263)
Q Consensus 146 ~~l-~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE--Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~ 221 (263)
.+. . ....++...+|++++-+..+++..+.+|+++++|| |+.++|+.. .+.+.++.+ .+.++|+++|+..
T Consensus 64 ~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~--~~~~~i~v~h~~~ 137 (174)
T PRK13695 64 VGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLD--SEKPVIATLHRRS 137 (174)
T ss_pred cCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHh--CCCeEEEEECchh
Confidence 332 2 22345566899999999999999999999999999 555666554 445555442 2579999999954
Q ss_pred hhhcCCEEEEEeCCEEEEe
Q 024738 222 ELEYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 222 ~~~~~d~v~~l~~G~i~~~ 240 (263)
....+|++..+.+|++...
T Consensus 138 ~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 138 VHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred hHHHHHHHhccCCcEEEEE
Confidence 4578999999999998665
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=118.24 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=85.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+-+|++|+.++|++++|+||||+||||+++++++..--. -| .|||-..... ...+.+..
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G--------~~vpa~~~~i----~~~~~i~~------- 78 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG--------MDVPAKSMRL----SLVDRIFT------- 78 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC--------CccCccccEe----ccccEEEE-------
Confidence 5789999999999999999999999999999998863211 12 1222221100 00000000
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCC
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-VKNLLGDSG 209 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~-l~~l~~~~~ 209 (263)
.++-.+....--+.++ -|-+++.-+...+.+|+++|+|||++|+|+.....+... +..+.+ ..
T Consensus 79 --------------~~~~~d~~~~~~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~ 142 (218)
T cd03286 79 --------------RIGARDDIMKGESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KV 142 (218)
T ss_pred --------------ecCcccccccCcchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHH-hc
Confidence 0000000000011111 233333333334578999999999999999998888887 555543 23
Q ss_pred CcEEEEEccCcchhh
Q 024738 210 EVTALWVTHRLEELE 224 (263)
Q Consensus 210 ~~tiiivtH~~~~~~ 224 (263)
+.++|++||+.+.+.
T Consensus 143 ~~~~i~~TH~~el~~ 157 (218)
T cd03286 143 KCLTLFSTHYHSLCD 157 (218)
T ss_pred CCcEEEEeccHHHHH
Confidence 679999999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=134.97 Aligned_cols=115 Identities=29% Similarity=0.374 Sum_probs=100.5
Q ss_pred HHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 024738 143 LDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEA--CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHR 219 (263)
Q Consensus 143 l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~--p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~ 219 (263)
|-.+||..+ ++|...+|||||.||+-||..+-.. -=+++||||+.||-+..-.++++.|+++... |-|+|+|.||
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDl--GNTviVVEHD 542 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL--GNTVIVVEHD 542 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 445688753 7899999999999999999998654 3578999999999999999999999999653 6799999999
Q ss_pred cchhhcCCEEEEEe------CCEEEEecChhhHHhhhhhhhhhhhh
Q 024738 220 LEELEYADGAFYME------DGKIVMQADGVSILNFIKSRQSSYIE 259 (263)
Q Consensus 220 ~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
.+.+..||+|+-|- .|+|++.|++++++++..+....|+.
T Consensus 543 edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLs 588 (935)
T COG0178 543 EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLS 588 (935)
T ss_pred HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhhc
Confidence 99999999999984 78999999999999987777777764
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=118.66 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=97.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHH-HHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTL-LKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.+.++++.+.+++ -+++|+++.|.|+|||||||| +++++++.++... ..|+..+.
T Consensus 7 ~~~~~~ld~~l~g--------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~-------~~yi~~e~--- 62 (230)
T PRK08533 7 ELSRDELHKRLGG--------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS-------VSYVSTQL--- 62 (230)
T ss_pred EEEEeeeehhhCC--------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc-------EEEEeCCC---
Confidence 3566677666653 379999999999999999999 6999998765322 33444221
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCC
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTT 187 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts 187 (263)
+..+.+... ...++..++ .... +.-...+-.+ .+|+++.++-.+++.+.. +|+++++||||+
T Consensus 63 ----~~~~~~~~~-~~~g~~~~~-------~~~~-~~l~~~~~~~-~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~ 128 (230)
T PRK08533 63 ----TTTEFIKQM-MSLGYDINK-------KLIS-GKLLYIPVYP-LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSS 128 (230)
T ss_pred ----CHHHHHHHH-HHhCCchHH-------Hhhc-CcEEEEEecc-cccChHHHHHHHHHHHHHHHhcCCCEEEEECccH
Confidence 222222211 111221111 1111 1101112222 367776666565554443 699999999999
Q ss_pred CC----CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch--------hh-cCCEEEEEe
Q 024738 188 FL----DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE--------LE-YADGAFYME 233 (263)
Q Consensus 188 ~L----D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~--------~~-~~d~v~~l~ 233 (263)
++ |+..++.+.+.++.+++. |.|++ +||+... ++ .||-|+.|+
T Consensus 129 ~l~~~~d~~~~~~l~~~l~~l~~~--g~tvi-~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 129 LISNDASEVAVNDLMAFFKRISSL--NKVII-LTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HhcCCcchHHHHHHHHHHHHHHhC--CCEEE-EEecccccccccceeEEEeeeEEEEEE
Confidence 99 888888899999888643 55554 4565443 23 378888887
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.5e-14 Score=142.14 Aligned_cols=80 Identities=33% Similarity=0.480 Sum_probs=70.1
Q ss_pred CCCCCCChHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC-cEEEEEccCcchhhcC
Q 024738 154 RPVQTLSGGQKQRVAI------AGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE-VTALWVTHRLEELEYA 226 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~l------Aral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~-~tiiivtH~~~~~~~~ 226 (263)
.++..|||||++|++| |++++.+|++++|||||++||+..+..+.+++........+ .++|++|||.+++..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999975 58999999999999999999999999999999865443223 4899999999988899
Q ss_pred CEEEEEe
Q 024738 227 DGAFYME 233 (263)
Q Consensus 227 d~v~~l~ 233 (263)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-14 Score=137.26 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=69.1
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 158 TLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 158 ~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
.|||||+||++||++++. +|+++|||||++|||..+...+.+.|+++.+ +.+||+|||++..+.+||+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~---~~qvi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE---STQVMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHhCCEEEEEe
Confidence 589999999999999997 6899999999999999999999999999853 479999999999888999999998
Q ss_pred CC
Q 024738 234 DG 235 (263)
Q Consensus 234 ~G 235 (263)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 74
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-14 Score=120.12 Aligned_cols=67 Identities=31% Similarity=0.383 Sum_probs=54.3
Q ss_pred CCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 155 PVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 155 ~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
+...+|.|++|.+.|+.++...+ .++++|||-++|.|..+..+++.|.+... .+.-+|++||++..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~--~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK--KNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG--GSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc--cCCEEEEeCccchhc
Confidence 34577999999999998888777 89999999999999999999999988754 246899999998764
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-14 Score=142.26 Aligned_cols=80 Identities=31% Similarity=0.418 Sum_probs=70.0
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 153 QRPVQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 153 ~~~~~~LSgGqkq------Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
++++..|||||+| |++||++++.+|+++||||||++||+..+..+.+.|..+... +.+||+|||+.++...|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~--~~~iiiith~~~~~~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK--IPQVIIVSHDEELKDAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHhC
Confidence 4678899999999 555666788999999999999999999999999999987542 46899999999877889
Q ss_pred CEEEEEeC
Q 024738 227 DGAFYMED 234 (263)
Q Consensus 227 d~v~~l~~ 234 (263)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999973
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-14 Score=107.61 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=53.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ceEEEecCCCCcccccCHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PKSFVFQNPDHQVVMPTVE 118 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~~~v~q~~~~~~~~~tv~ 118 (263)
.+|++++|++++|++++|+||||||||||++++. +|++.+.+ ..++++|+ .+..+++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~----lf~~ti~ 72 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL----GLEIRLR 72 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh----cchhhHH
Confidence 5899999999999999999999999999999986 78898853 25666665 3456999
Q ss_pred HHHHhh
Q 024738 119 ADVAFG 124 (263)
Q Consensus 119 ~~~~~~ 124 (263)
+|+.++
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-13 Score=110.30 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=95.1
Q ss_pred EEEEECCCCCcHHHHHHH-HhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKV-LAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALD 144 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~-i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 144 (263)
++.|.||.|+|||||.-- +....+ .| ..+.|+.-+. +..+.+.. +...+++. +.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~--~g-----~~v~~~s~e~-------~~~~~~~~-~~~~g~~~--------~~l~ 57 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA--RG-----EPGLYVTLEE-------SPEELIEN-AESLGWDL--------ERLE 57 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--CC-----CcEEEEECCC-------CHHHHHHH-HHHcCCCh--------HHHH
Confidence 367999999999998753 333322 12 1223332211 22221111 11112321 1233
Q ss_pred HcCCCcccCCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCCcEEEE
Q 024738 145 AVGMSNYLQRPVQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLD---ESDQFGVIEAVKNLLGDSGEVTALW 215 (263)
Q Consensus 145 ~~~l~~~~~~~~~~LSgGqkq------Rv~lAral~~~p~llllDEPts~LD---~~~~~~l~~~l~~l~~~~~~~tiii 215 (263)
..|.....+.++..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+++..+.+. |.|+|+
T Consensus 58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~--g~tvi~ 135 (187)
T cd01124 58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF--GVTTLL 135 (187)
T ss_pred hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC--CCEEEE
Confidence 456556677888999999998 5555556778999999999999999 88888888888887543 689999
Q ss_pred EccCcch---------hh-cCCEEEEEe
Q 024738 216 VTHRLEE---------LE-YADGAFYME 233 (263)
Q Consensus 216 vtH~~~~---------~~-~~d~v~~l~ 233 (263)
++|+... +. .||.++.|+
T Consensus 136 v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 136 TSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9998764 43 599999997
|
A related protein is found in archaea. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-13 Score=123.60 Aligned_cols=169 Identities=23% Similarity=0.185 Sum_probs=119.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
.++.+.++..|... ..+++.+ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+ +.|..
T Consensus 130 ~~~r~~i~~~l~TG----iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~------iGerg---- 194 (432)
T PRK06793 130 AFEREEITDVFETG----IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISL------VGERG---- 194 (432)
T ss_pred chheechhhccCCC----CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEe------CCCCc----
Confidence 47777888878643 3588885 999999999999999999999999999999998885543 33432
Q ss_pred cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHh-------hCCCEEEEeC
Q 024738 113 VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALA-------EACKVLLLDE 184 (263)
Q Consensus 113 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~-------~~p~llllDE 184 (263)
.++.+.+..-+. .-++.. ..=....+.|.|+|+|++.+.+.+ .++-++++|+
T Consensus 195 --~ev~e~~~~~l~------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 195 --REVKDFIRKELG------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred --ccHHHHHHHHhh------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 145554332111 111110 011345788999999999999887 7999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecCh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
||+..|+. +++...+.+.-. .|.+..+.||....++.|.+ ...|.|......
T Consensus 255 lTr~a~A~--reisl~~~e~p~--~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~tv 306 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPI--GGKTLLMESYMKKLLERSGK---TQKGSITGIYTV 306 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCC--CCeeeeeeccchhHHHHhcc---CCCcceEEEEEE
Confidence 99999996 445555555432 36788888885444554433 468888766543
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=138.79 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=67.3
Q ss_pred CCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCCcEEEEEccCcchhh
Q 024738 154 RPVQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD---SGEVTALWVTHRLEELE 224 (263)
Q Consensus 154 ~~~~~LSgGqkq------Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~---~~~~tiiivtH~~~~~~ 224 (263)
...+.|||||+| |++||||++.+|++|+|||||++||+.+...+.+.|.++... ..|.+||+||||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345799999999 999999999999999999999999999999999999887421 23679999999999863
Q ss_pred ------cCCEEEEEe
Q 024738 225 ------YADGAFYME 233 (263)
Q Consensus 225 ------~~d~v~~l~ 233 (263)
.|++.+-+.
T Consensus 1275 ~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1275 LLGRSEYVEKFYRLK 1289 (1311)
T ss_pred HHhhccccceeeeee
Confidence 256666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.6e-13 Score=136.46 Aligned_cols=81 Identities=27% Similarity=0.154 Sum_probs=72.2
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 152 LQRPVQTLSGGQKQRVAIAGALAE--------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lAral~~--------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
..+++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.. .|+||+||||..++.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~--~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA--SGKTIGVISHVEAMK 1020 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEecHHHHH
Confidence 358899999999999999999996 8999999999999999999999999999864 378999999977776
Q ss_pred h-cCCEEEEEeC
Q 024738 224 E-YADGAFYMED 234 (263)
Q Consensus 224 ~-~~d~v~~l~~ 234 (263)
. +..+|.|-..
T Consensus 1021 ~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1021 ERIPVQIKVKKI 1032 (1047)
T ss_pred HhccceEEEEEC
Confidence 4 6788887765
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-13 Score=139.20 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=70.1
Q ss_pred cCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 152 LQRPVQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lAral~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
.+.++..|||||+||++||++++ .+|+++||||||++||+.++..+.++|..+++ +.+||||||+++.+.+||
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~---~~~~i~~sh~~~~~~~~d 1159 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK---NTQFIVITHNKGTMEVAD 1159 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc---CCEEEEEEcChhHHHHhh
Confidence 45678899999999999999985 67799999999999999999999999998753 358999999999888899
Q ss_pred EEEEEe
Q 024738 228 GAFYME 233 (263)
Q Consensus 228 ~v~~l~ 233 (263)
+++.+.
T Consensus 1160 ~~~~~~ 1165 (1179)
T TIGR02168 1160 QLYGVT 1165 (1179)
T ss_pred hHeeee
Confidence 987654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.8e-12 Score=126.35 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=58.6
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh----------hcCCEEEEEeCCEEEEecC
Q 024738 174 AEACKVLLLDELTTFL-DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL----------EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 174 ~~~p~llllDEPts~L-D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~----------~~~d~v~~l~~G~i~~~g~ 242 (263)
..+|.++++|||+.+| |+..++.+.+.++++.+. |.+++++||+++.+ +.|++.++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~--~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA--NCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 4799999999999999 799999999999998653 56999999999875 3699999999999876654
Q ss_pred h
Q 024738 243 G 243 (263)
Q Consensus 243 ~ 243 (263)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=106.73 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=103.9
Q ss_pred cceecee--eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcCceEEEecCCCCcccccCHHHHHHhhcc-
Q 024738 52 PILRDCS--FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLG- 126 (263)
Q Consensus 52 ~iL~~vs--l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~- 126 (263)
++++++- |++.+ -|+.|+|.||+||||||..|+-.... ..|.=.+.+.+ . .++ ..+.+++.+...
T Consensus 24 Pa~r~l~~~LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~-~-~s~-------s~l~~~~k~~~~~ 93 (233)
T COG3910 24 PAFRHLEERLEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGEL-D-ASH-------SALVDYAKLHKRK 93 (233)
T ss_pred hHHHhhhhhccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCccc-c-ccc-------chHHHhHHHhhcC
Confidence 3444443 45555 58999999999999999988754422 22221111110 0 000 012222222110
Q ss_pred CC--CC-ChHHHHHHHHHHHHHcCC-CcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 024738 127 NL--NL-THDEVRSKVAKALDAVGM-SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202 (263)
Q Consensus 127 ~~--~~-~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~ 202 (263)
.. ++ -..+.--.+...++.+.= ..+-.+.....|.||-=---+.+.+ +.--++|||||-++|.|.-+..++..|+
T Consensus 94 k~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~ 172 (233)
T COG3910 94 KPPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILR 172 (233)
T ss_pred CCCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHH
Confidence 00 00 011111111122333221 1234556778999997655555554 4668999999999999999999999999
Q ss_pred HHHhcCCCcEEEEEccCcchhhc-CCEEEEEeCCEE
Q 024738 203 NLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKI 237 (263)
Q Consensus 203 ~l~~~~~~~tiiivtH~~~~~~~-~d~v~~l~~G~i 237 (263)
++++. |.-+||+||.+-++.+ --+|+-++.+.+
T Consensus 173 ~la~s--GaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 173 DLADS--GAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred HHHhc--CCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 99764 5789999999998876 567888877754
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-12 Score=117.48 Aligned_cols=145 Identities=13% Similarity=0.137 Sum_probs=97.1
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHH
Q 024738 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR 136 (263)
Q Consensus 57 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~ 136 (263)
+++.+..|+.++|+||+|||||||+++|+++++|..|.+.+. ++.-. .... ...+.+.. .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--------d~~El-~~~~-~~~~~l~~---~------- 196 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--------DTREI-FLPH-PNYVHLFY---S------- 196 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--------Ccccc-CCCC-CCEEEEEe---c-------
Confidence 567888999999999999999999999999999888866553 21100 0000 00000000 0
Q ss_pred HHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 024738 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216 (263)
Q Consensus 137 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiiv 216 (263)
. ........|- .-.++.+|-.+|+++++|||.+ .+.+++++.+.. +..+++.+
T Consensus 197 -------------~-~~~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~--g~~~~i~T 249 (308)
T TIGR02788 197 -------------K-GGQGLAKVTP----KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT--GHPGSITT 249 (308)
T ss_pred -------------C-CCCCcCccCH----HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc--CCCeEEEE
Confidence 0 0000111222 2256778889999999999996 334566665532 23467999
Q ss_pred ccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 217 THRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 217 tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|..+.....+|+..|..|++...|.+.+.+.
T Consensus 250 ~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 250 LHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred EeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 99999767799999999999988888887763
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-12 Score=132.04 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=70.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCE
Q 024738 153 QRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADG 228 (263)
Q Consensus 153 ~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~ 228 (263)
.+++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++.. +..+|++||+...+..||+
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~---~~~~i~~t~~~~~~~~~d~ 1145 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG---EAQFIVVSLRSPMIEYADR 1145 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC---CCeEEEEECcHHHHHhcce
Confidence 45677999999999999999985 7899999999999999999999999998743 3579999999987889999
Q ss_pred EEEEeC
Q 024738 229 AFYMED 234 (263)
Q Consensus 229 v~~l~~ 234 (263)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 987764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=97.05 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=79.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
+++|.||||+|||||++.+++...+..|.| .|+..+.. ......+... . ......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v------~~~~~e~~----~~~~~~~~~~-~------------~~~~~~-- 55 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV------VYVDIEEE----IEELTERLIG-E------------SLKGAL-- 55 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE------EEEECCcc----hHHHHHHHhh-h------------hhcccc--
Confidence 478999999999999999999887655544 34444321 1112221100 0 000000
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT----------FLDESDQFGVIEAVKNLLGDSGEVTALW 215 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts----------~LD~~~~~~l~~~l~~l~~~~~~~tiii 215 (263)
+............+.++.++++.+++...+|+++++|||++ +.|......+.+++... ++ .+.|+|+
T Consensus 56 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~-~~~~vv~ 132 (165)
T cd01120 56 -DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RK-GGVTVIF 132 (165)
T ss_pred -ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hc-CCceEEE
Confidence 11112222333455666778889999999999999999995 44555455555555443 33 4789999
Q ss_pred EccCcch
Q 024738 216 VTHRLEE 222 (263)
Q Consensus 216 vtH~~~~ 222 (263)
++|....
T Consensus 133 ~~~~~~~ 139 (165)
T cd01120 133 TLQVPSG 139 (165)
T ss_pred EEecCCc
Confidence 9998754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=126.61 Aligned_cols=80 Identities=33% Similarity=0.378 Sum_probs=68.7
Q ss_pred CCCCCChHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 155 PVQTLSGGQKQ------RVAIAGALAEA-----C-KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 155 ~~~~LSgGqkq------Rv~lAral~~~-----p-~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
++..|||||++ |+++|++++.+ | +++||||||++||+..+..+.++|..+... +..+||+||||.+.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~-~~~qviiish~~~~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL-GVEQIVVVSHDDEL 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc-CCCeEEEEECChHH
Confidence 46799999999 89999998864 2 679999999999999999999999988532 22479999999999
Q ss_pred hhcCCEEEEEeCC
Q 024738 223 LEYADGAFYMEDG 235 (263)
Q Consensus 223 ~~~~d~v~~l~~G 235 (263)
+..||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 8889999999743
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=115.38 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=104.4
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
++++.++.+++|.+++++|||||||||++..|++.+.+..|.. +++++.+++. -.++.+++.+.....+...
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~----kV~LI~~Dt~----RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS----KVALLTTDSY----RIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC----eEEEEeCCcc----chhHHHHHHHHHHHhCCCe
Confidence 5667778888999999999999999999999999887777742 4678888762 2377888877554443332
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHH-HHHHHHHHhhCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ-RVAIAGALAEAC-----KVLLLDELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq-Rv~lAral~~~p-----~llllDEPts~LD~~~~~~l~~~l~~l~~ 206 (263)
.......+......++.+.....+.+...+++- .+.-+.+++.++ .+|+||.++.+-+ +.+.++.+..
T Consensus 317 ~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~------l~~i~~~f~~ 390 (484)
T PRK06995 317 HAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT------LNEVVQAYRG 390 (484)
T ss_pred eccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH------HHHHHHHhcc
Confidence 222222333444556665545556664434432 223344445554 6899999988733 3344444432
Q ss_pred cCCCcEEEEEccCcchh------hc----CCEEEEEeCCEEE
Q 024738 207 DSGEVTALWVTHRLEEL------EY----ADGAFYMEDGKIV 238 (263)
Q Consensus 207 ~~~~~tiiivtH~~~~~------~~----~d~v~~l~~G~i~ 238 (263)
.+.+-+|.|+--+.. .. -=-|.++..|+-+
T Consensus 391 --~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 391 --PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred --CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 234556667633211 21 2346777777644
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=111.79 Aligned_cols=77 Identities=31% Similarity=0.437 Sum_probs=66.6
Q ss_pred CCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c
Q 024738 156 VQTLSGGQKQRVAIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y 225 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~ 225 (263)
...+|.||+|+++||++|+ .+|+++|||||+++||+..+..+++.+.++ +..++++||+.+.+. .
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~-----~~qv~it~~~~~~~~~~ 345 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL-----GAQVFITTTDLEDLADL 345 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc-----CCEEEEEcCChhhhhhh
Confidence 3689999999999999986 799999999999999999999999988754 237899999987763 3
Q ss_pred --CCEEEEEeCCEE
Q 024738 226 --ADGAFYMEDGKI 237 (263)
Q Consensus 226 --~d~v~~l~~G~i 237 (263)
.++++.|++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 468999999987
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=99.73 Aligned_cols=153 Identities=17% Similarity=0.200 Sum_probs=91.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLA-GLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~ 138 (263)
=+++|.++.|.|++|||||||...++ +..+ ..+ ++.|+..+.. . ..+..++. ..++.-.+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~------~~~y~~~e~~---~-~~~~~~~~----~~g~~~~~~~-- 83 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK------KVYVITTENT---S-KSYLKQME----SVKIDISDFF-- 83 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC------EEEEEEcCCC---H-HHHHHHHH----HCCCChhHHH--
Confidence 57899999999999999999997764 3322 222 2344444321 1 12222221 1122211100
Q ss_pred HHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--ACKVLLLDELTTF---LDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 139 ~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~llllDEPts~---LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
... .+.+-+..-......|.++.+.+..++.++. +|+++++||||+. .|......+++.++.+.+ .+.|+
T Consensus 84 ~~g---~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~--~g~tv 158 (234)
T PRK06067 84 LWG---YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD--LGKTI 158 (234)
T ss_pred hCC---CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh--CCCEE
Confidence 000 0111111112234567889999999999987 9999999999964 455555556555665543 36799
Q ss_pred EEEccCcch-------hh-cCCEEEEEeC
Q 024738 214 LWVTHRLEE-------LE-YADGAFYMED 234 (263)
Q Consensus 214 iivtH~~~~-------~~-~~d~v~~l~~ 234 (263)
++++|+... +. .+|-++.|+.
T Consensus 159 llt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 159 LITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred EEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 999997654 33 4787887773
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=115.27 Aligned_cols=46 Identities=30% Similarity=0.462 Sum_probs=43.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEEcC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-HVYVKR 99 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~~ 99 (263)
.+|++|||++++||+++|+|||||||||||| +|+..|++| +|.+++
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg 66 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA 66 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence 5899999999999999999999999999999 788889888 799975
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=99.91 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE--------cCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~--------~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 135 (263)
|.+..|+||.|+|||||+-.++=-. ..|.=.+ .+++-|+.- ..+..+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v--a~G~~~~g~~~~~~~~~~Vlyi~~----------------------Ed~~~~i 56 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM--ALGKNLFGGGLKVTEPGRVVYLSA----------------------EDPREEI 56 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH--hcCccccCCccccCCCceEEEEEC----------------------CCCHHHH
Confidence 6788999999999999986664211 1111000 011111111 1122334
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHH----------------HHhhCCCEEEEeCCCCC------CCHHH
Q 024738 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAG----------------ALAEACKVLLLDELTTF------LDESD 193 (263)
Q Consensus 136 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAr----------------al~~~p~llllDEPts~------LD~~~ 193 (263)
.+++..+...+++.+..++... .+|+.|++.+++ +...+|+++|+| |+++ +|+..
T Consensus 57 ~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~ 133 (239)
T cd01125 57 HRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGA 133 (239)
T ss_pred HHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHH
Confidence 4556666666665443333322 245666655544 446799999999 8764 79999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 194 QFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 194 ~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
...+++.|.+++++ .|++||+++|..
T Consensus 134 ~~~~~~~L~~~a~~-~g~avl~v~H~~ 159 (239)
T cd01125 134 MDAVIKALRRIAAQ-TGAAILLVHHVR 159 (239)
T ss_pred HHHHHHHHHHHHHH-hCCEEEEEeccC
Confidence 99999999998764 478999999976
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-11 Score=100.24 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=72.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
+++|.||||||||||.++|++++ ..|.+ .+++++... ... ...+........+........+...+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~------~v~~~D~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV------VIISQDSYY-KDL-SHEELEERKNNNYDHPDAFDFDLLISHLQD 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe------EEEEecccc-ccc-ccccHHHhccCCCCCCCcccHHHHHHHHHH
Confidence 58999999999999999999988 23333 344444311 101 111111111111111111122344566777
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~ 192 (263)
+......+.+..++|.|++++..+ .+.+++++|+|+|+.+.++.
T Consensus 71 l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 71 LKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 777667788889999999887655 57889999999999999873
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=95.60 Aligned_cols=118 Identities=20% Similarity=0.305 Sum_probs=70.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEc-CceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVK-RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKAL 143 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~-~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l 143 (263)
++.|.||+||||||+++.+++.+.+. .|.|... ..+-+..+... + + ...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~------~------~-i~q---------------- 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKR------S------L-INQ---------------- 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCcc------c------e-eee----------------
Confidence 68999999999999999988887643 4555331 11111111000 0 0 000
Q ss_pred HHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 144 DAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 144 ~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
..++.. ...++. +++++|..+|+++++|||. |+.....+++ .+. .|..++.++|..+..
T Consensus 54 ~~vg~~------~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~----~a~--~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 54 REVGLD------TLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT----AAE--TGHLVMSTLHTNSAA 112 (198)
T ss_pred cccCCC------ccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH----HHH--cCCEEEEEecCCcHH
Confidence 000110 111211 5889999999999999996 6665433332 332 257899999998766
Q ss_pred hcCCEEEEEe
Q 024738 224 EYADGAFYME 233 (263)
Q Consensus 224 ~~~d~v~~l~ 233 (263)
...+|++.+.
T Consensus 113 ~~~~Rl~~l~ 122 (198)
T cd01131 113 KTIDRIIDVF 122 (198)
T ss_pred HHHhHHHhhc
Confidence 6667766553
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-11 Score=114.33 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=95.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHH-hhccC---------
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVL--AGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA-FGLGN--------- 127 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i--~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~-~~~~~--------- 127 (263)
=+++|.++.|.|++|||||||..-+ .|+.++.+.-+++. +++.. ..+..|.. +++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs------~eE~~-----~~l~~~~~~~G~~~~~~~~~g~l 85 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT------FEESP-----QDIIKNARSFGWDLQKLVDEGKL 85 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE------EecCH-----HHHHHHHHHcCCCHHHHhhcCce
Confidence 4789999999999999999999755 46655444444432 11110 01222211 11000
Q ss_pred --CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 128 --LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA--GALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 128 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA--ral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
...... .....+++.+++++.+++....+|+|++|||.|+ .+|...|+.. ...++.++++++.
T Consensus 86 ~~~~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~ 152 (484)
T TIGR02655 86 FILDASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVAR 152 (484)
T ss_pred EEEecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHH
Confidence 000000 0111234556777777888899999999999999 5666665544 5677888888888
Q ss_pred HHhcCCCcEEEEEccCcch--------h-h-cCCEEEEEe
Q 024738 204 LLGDSGEVTALWVTHRLEE--------L-E-YADGAFYME 233 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~--------~-~-~~d~v~~l~ 233 (263)
+.+ .|+|+|++||+.+. + + .||.|+.|+
T Consensus 153 L~~--~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 153 LKQ--IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHH--CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 754 47899999998764 2 4 489999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.6e-09 Score=79.84 Aligned_cols=119 Identities=26% Similarity=0.367 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-GHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
++..+.|+||+||||||+++.++..+.... +-+.+.. +.. . ........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~-------~~~--~-~~~~~~~~-------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-------EDI--L-EEVLDQLL-------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC-------EEc--c-ccCHHHHH--------------------
Confidence 367899999999999999999999886654 2222211 100 0 00111100
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-----HHHHHhcCCCcEEEEE
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA-----VKNLLGDSGEVTALWV 216 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~-----l~~l~~~~~~~tiiiv 216 (263)
...........++++..+..+++|-..+|+++++||+..-.+.......... ...... ..+..+|.+
T Consensus 51 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 122 (148)
T smart00382 51 -------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS-EKNLTVILT 122 (148)
T ss_pred -------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh-cCCCEEEEE
Confidence 1122233456788888888888888888999999999999999988766541 122222 234688888
Q ss_pred ccC
Q 024738 217 THR 219 (263)
Q Consensus 217 tH~ 219 (263)
+|.
T Consensus 123 ~~~ 125 (148)
T smart00382 123 TND 125 (148)
T ss_pred eCC
Confidence 884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.7e-10 Score=113.69 Aligned_cols=81 Identities=32% Similarity=0.377 Sum_probs=71.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 153 QRPVQTLSGGQKQRVAIAGALA------EA--CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 153 ~~~~~~LSgGqkqRv~lAral~------~~--p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
-+++..|||||+=.++||.+|+ .+ -++++|||||.+||+.....+++.|..+... +.+|+||||+.++.+
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~e 887 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELKE 887 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHH
Confidence 3788999999999888887765 45 7999999999999999999999999998653 679999999999999
Q ss_pred cCCEEEEEeCC
Q 024738 225 YADGAFYMEDG 235 (263)
Q Consensus 225 ~~d~v~~l~~G 235 (263)
.+|.++.+...
T Consensus 888 ~~~~~i~V~k~ 898 (908)
T COG0419 888 RADVRIRVKKD 898 (908)
T ss_pred hCCeEEEEEec
Confidence 99999988653
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-10 Score=102.57 Aligned_cols=62 Identities=31% Similarity=0.384 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 157 QTLSGGQKQRVAIAGALAE---------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~~---------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
..+|.||+|+++||.+|+. +|++||||||+++||+..+..+++.|.+. |.+++++||+.+.+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~-----~~qv~it~~~~~~~ 344 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL-----GVQVFVTAISLDHL 344 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc-----CCEEEEEecChhhc
Confidence 3899999999999999999 99999999999999999999999998753 45899999998764
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-09 Score=99.41 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=55.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
..++.+++++.|... ..+++.++ +|.+|++++|+||||||||||+++|+++.+|+.|.|.+
T Consensus 138 ~~~~r~~v~~~l~TG----i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l 198 (450)
T PRK06002 138 PAMTRARVETGLRTG----VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL 198 (450)
T ss_pred CCeEeecceEEcCCC----cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence 479999999999753 46899996 99999999999999999999999999999999998876
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=100.93 Aligned_cols=173 Identities=17% Similarity=0.106 Sum_probs=100.4
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc-cccC-----HHHHHHhh
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV-VMPT-----VEADVAFG 124 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~-~~~t-----v~~~~~~~ 124 (263)
..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.+...+ +...... +... ..++..+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG------~r~~ev~~~~~~~~~~~~l~~tvvv 223 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIG------ERGREVREFIEHDLGEEGLKRSVVV 223 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEe------ecchHHHHHHHHHhcccccceEEEE
Confidence 3689999 99999999999999999999999999999999877554321 1110000 0000 00000000
Q ss_pred ccCCCCChHHH------HHHHHHHHHHcCCCcccCCCCCCCCh-HHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHH
Q 024738 125 LGNLNLTHDEV------RSKVAKALDAVGMSNYLQRPVQTLSG-GQKQRVAIAGALAEACKVLLLDEL--TTFLDESDQF 195 (263)
Q Consensus 125 ~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LSg-GqkqRv~lAral~~~p~llllDEP--ts~LD~~~~~ 195 (263)
......+.... --.+.+.+...|-+-++ -..+|+- -|.+| .++ +.+.|| +.|+|+....
T Consensus 224 ~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll--~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gypp~~~~ 291 (440)
T TIGR01026 224 VATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLL--LMDSVTRFAMAQR-EIG---------LAAGEPPATKGYTPSVFS 291 (440)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE--EEeChHHHHHHHH-HHH---------HhcCCCCcccccChhHHH
Confidence 00001111100 01111222222332110 1122321 12222 111 345675 5699999999
Q ss_pred HHHHHHHHHHhcCCCc-------EEEEEccCcchhhcCCEEEEEeCCEEEEecChhh
Q 024738 196 GVIEAVKNLLGDSGEV-------TALWVTHRLEELEYADGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 196 ~l~~~l~~l~~~~~~~-------tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
.+.+++.+.... +. ||++.+||+. -..||++..+.+|+++.+.+.++
T Consensus 292 ~l~~l~ERag~~--~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 292 TLPRLLERAGAS--GKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred HHHHHHHHhccC--CCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence 999999886532 45 7888999873 23689999999999999887654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=110.06 Aligned_cols=136 Identities=24% Similarity=0.290 Sum_probs=87.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+=+|++|. +.+.++.|.|||.+||||+||.++-+. -..-| .|||-.... . ++.+.
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G--------~~VPa~~a~---i-~~~d~---------- 652 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG--------SFVPAESAR---I-GIVDR---------- 652 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC--------CceeccceE---e-cccCe----------
Confidence 366788888 778899999999999999999987542 11112 234433210 0 11111
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHH
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--ACKVLLLDEL---TTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~llllDEP---ts~LD~~~~~~l~~~l~~l~ 205 (263)
++.++|-. +.....+|.=|.....++.+|-. ++.++|+||| |+.+|-.+ ..+.++..+.
T Consensus 653 -----------I~triga~---d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~ 716 (854)
T PRK05399 653 -----------IFTRIGAS---DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLH 716 (854)
T ss_pred -----------eeeccCcc---cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHH
Confidence 11122222 12234577777777888887766 9999999999 88888444 3455555554
Q ss_pred hcCCCcEEEEEccCcchhhcCC
Q 024738 206 GDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~~~~d 227 (263)
+. .+.++|++||+.+..+.++
T Consensus 717 ~~-~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 717 DK-IGAKTLFATHYHELTELEE 737 (854)
T ss_pred hc-CCceEEEEechHHHHHHhh
Confidence 42 2478999999966555544
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-09 Score=90.15 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=42.2
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 45566778999999999999999999999999999999999998853
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-09 Score=112.72 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=55.1
Q ss_pred cCCCCCCCChHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 024738 152 LQRPVQTLSGGQKQRVA----IAGA--------LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHR 219 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~----lAra--------l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~ 219 (263)
.++.++.||||||||++ +|++ +..+|+++||||||+|||+.++..++++|.++ +.++||+||+
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l-----~~~~i~~s~~ 1315 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL-----DLDFVMTSER 1315 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh-----CCCEEEEccc
Confidence 35557899999999996 5755 45899999999999999999999999999987 4688999986
Q ss_pred c
Q 024738 220 L 220 (263)
Q Consensus 220 ~ 220 (263)
+
T Consensus 1316 ~ 1316 (1353)
T TIGR02680 1316 E 1316 (1353)
T ss_pred h
Confidence 4
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >COG4637 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.9e-09 Score=92.08 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEE
Q 024738 157 QTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYM 232 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l 232 (263)
.+||-|+.+-+++|.+|. ..|.++++|||-.+|-|..-..+...+++.++. .-||++||...+++ . ...+++.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~---sQv~VsTHS~rLl~~~e~~~v~~~ 345 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKR---SQVIVSTHSPRLLNAVEEHSVFWL 345 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhcc---ceEEEEeCCHHHHhhccccceEEe
Confidence 399999999999999998 479999999999999999999999999987653 26999999999985 3 3444444
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-09 Score=99.30 Aligned_cols=109 Identities=19% Similarity=0.203 Sum_probs=72.1
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcC-------------------ceEEE-----e
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKR-------------------PKSFV-----F 105 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~-------------------~~~~v-----~ 105 (263)
..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.|.+.| +.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3589998 99999999999999999999999999999854 445555421 24555 7
Q ss_pred cCCCCcccccCHHHHHHhhccCCCC---ChHHHHHHHHHHHHHcCCC-----cccCCCCCCCC
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNL---THDEVRSKVAKALDAVGMS-----NYLQRPVQTLS 160 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LS 160 (263)
|+|...+...-+...++..+...+. ...+...++.++++.+++. .....+|+.||
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 7764332211122222222222222 1245567788899999983 45677888877
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-09 Score=96.38 Aligned_cols=77 Identities=27% Similarity=0.259 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 157 QTLSGGQKQRVAIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 157 ~~LSgGqkqRv~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
..+|+||++++++|+.|+ .+|+++|||||+++||+..+..+.+.|... . .++|.+| +....||
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~--q~~it~t---~~~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---P--QAIVAGT---EAPPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---C--cEEEEcC---CCCCCCc
Confidence 478999999999999999 899999999999999999999999888643 1 1333333 3345799
Q ss_pred EEEEEeCCEEEEec
Q 024738 228 GAFYMEDGKIVMQA 241 (263)
Q Consensus 228 ~v~~l~~G~i~~~g 241 (263)
+++.+.+|++.-+.
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999875443
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.4e-09 Score=83.33 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=76.1
Q ss_pred EEEECCCCCcHHHHHHHHh--CCCCCCceEEEEcCce-------EEEecC-CCCccc----------cc------CHHHH
Q 024738 67 WMLLGPNGCGKSTLLKVLA--GLLKPTNGHVYVKRPK-------SFVFQN-PDHQVV----------MP------TVEAD 120 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~--Gl~~p~~G~I~~~~~~-------~~v~q~-~~~~~~----------~~------tv~~~ 120 (263)
++|+|++|||||||++.|+ +..++.+|++.....+ .+.+-+ |..... .. +..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 6899999999999999999 7777777764322111 111111 211000 00 01111
Q ss_pred HHhhccC--CCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHH
Q 024738 121 VAFGLGN--LNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGAL-----AEACKVLLLDELTTFLDES 192 (263)
Q Consensus 121 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral-----~~~p~llllDEPts~LD~~ 192 (263)
+...+.. ...........+.+++..++.. -..-.+...+|.+++++....... ...|+++ |+|++|..
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~ 157 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQ 157 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCC
Confidence 1111000 1111112234455667776654 223344677899998887666553 3445655 99999999
Q ss_pred HHHHHHHHHHHH
Q 024738 193 DQFGVIEAVKNL 204 (263)
Q Consensus 193 ~~~~l~~~l~~l 204 (263)
+..++++.|.++
T Consensus 158 ~~~~l~~~l~~~ 169 (170)
T cd01876 158 GIDELRALIEKW 169 (170)
T ss_pred CHHHHHHHHHHh
Confidence 999999888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=100.01 Aligned_cols=118 Identities=23% Similarity=0.286 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (263)
..+.++|+||||||||||++++.++.++..|+=... ...|+..+.....+......+..++. . .+.....+.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~-~~~fv~i~~~~l~~d~~~i~~~llg~----~-~~~~~~~a~~~ 247 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE-DAPFVEVDGTTLRWDPREVTNPLLGS----V-HDPIYQGARRD 247 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC-CCCeEEEechhccCCHHHHhHHhcCC----c-cHHHHHHHHHH
Confidence 356799999999999999999999987665541111 11233332211111001111222221 1 12222345566
Q ss_pred HHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 143 l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
++.+|+.......+.++||| +|++|| +..||+..+..+++.+.+
T Consensus 248 l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 248 LAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 88889988888899999999 999999 799999999999999875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.6e-08 Score=83.49 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=36.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
.+..++|+||+..|=++.....+...+.+...+..+..+|++||+.+..+
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 45779999999999999988877766665444323568899999998754
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=107.41 Aligned_cols=148 Identities=18% Similarity=0.275 Sum_probs=82.7
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChH
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD 133 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~ 133 (263)
.=+++..+.+++++|+|++|+|||||++.+++.+ ...+|.+++++. ++.+....+........+... .
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~--~v~~~~~~~~~~~~~~~~~~~---------~ 266 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA--FISKSMEIYSSANPDDYNMKL---------H 266 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc--ccccchhhcccccccccchhH---------H
Confidence 3356778899999999999999999999996654 456888877541 222211000000000000000 0
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCCcE
Q 024738 134 EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG-DSGEVT 212 (263)
Q Consensus 134 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~~~~~t 212 (263)
...+.+.++++..++. +..+ ++.++| |..++-+|+||+- |... .++.+..... ...|.+
T Consensus 267 l~~~~l~~il~~~~~~------~~~~-~~~~~~------L~~krvLLVLDdv----~~~~---~l~~L~~~~~~~~~Gsr 326 (1153)
T PLN03210 267 LQRAFLSEILDKKDIK------IYHL-GAMEER------LKHRKVLIFIDDL----DDQD---VLDALAGQTQWFGSGSR 326 (1153)
T ss_pred HHHHHHHHHhCCCCcc------cCCH-HHHHHH------HhCCeEEEEEeCC----CCHH---HHHHHHhhCccCCCCcE
Confidence 0112233344433332 2222 555555 4467778888983 3332 3344443221 124679
Q ss_pred EEEEccCcchhh-c-CCEEEEEe
Q 024738 213 ALWVTHRLEELE-Y-ADGAFYME 233 (263)
Q Consensus 213 iiivtH~~~~~~-~-~d~v~~l~ 233 (263)
||++|||...+. . +|+++.+.
T Consensus 327 IIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 327 IIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred EEEEeCcHHHHHhcCCCeEEEec
Confidence 999999999875 3 78877664
|
syringae 6; Provisional |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-09 Score=92.27 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
=+++|++++|.|++|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 58999999999999999999987554
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-08 Score=97.85 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh----------hcCCEEEEEeC
Q 024738 172 ALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL----------EYADGAFYMED 234 (263)
Q Consensus 172 al~~~p~llllDEPts~LD-~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~----------~~~d~v~~l~~ 234 (263)
.+..+|.++++|||...|| +...+.+.+.++.+.+. |..++++||+++.+ +.|...++|-+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~--~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKL--NTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 3457899999999999999 88888999999988643 46899999998763 23566566655
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=95.44 Aligned_cols=53 Identities=26% Similarity=0.228 Sum_probs=46.9
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 169 IAGALAEACKVLLLDELTTFL-DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 169 lAral~~~p~llllDEPts~L-D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
|++++..+|.++++|||+.+| |+..+..+.+.++.+++. |.+++++||+++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~--g~~vil~TQs~~d~ 733 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA--NCLVLMATQSLSDA 733 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH
Confidence 577888999999999999999 799999999999988653 56999999999976
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-08 Score=81.89 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCC-cccCCCCCCCChHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 024738 138 KVAKALDAVGMS-NYLQRPVQTLSGGQKQRVA--IAGALAE-ACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 138 ~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~--lAral~~-~p~llllDEPts~LD~~~~~~l~~~l~~l~~ 206 (263)
.+.++++..++. -..-.++..+|+|++|++. +++.+-. +++++ |+|++|..+.+++.+.|.++.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 445666766765 3344567789999999987 5555544 34443 9999999999999999998765
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=95.86 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=39.2
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~ 184 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV 184 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence 4699999 99999999999999999999999999999988754
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.1e-08 Score=89.29 Aligned_cols=113 Identities=26% Similarity=0.335 Sum_probs=67.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK-PTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~ 140 (263)
.++.++.|.||+||||||+++.+.+.+. +.+|.|.. ..+|..+. . .+ ...... .
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t-------iEdp~E~~-~----~~------~~~~i~---q---- 174 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT-------IEDPIEYV-H----RN------KRSLIN---Q---- 174 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE-------EcCChhhh-c----cC------ccceEE---c----
Confidence 5688999999999999999999998665 34565532 12221000 0 00 000000 0
Q ss_pred HHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 141 ~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
...|.. ..+ -.-++++||-.+|+++++||+. |+.+....++. +. .|.+++.+.|..
T Consensus 175 ---~evg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a~--tGh~v~~T~Ha~ 230 (343)
T TIGR01420 175 ---REVGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTA----AE--TGHLVFGTLHTN 230 (343)
T ss_pred ---cccCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----HH--cCCcEEEEEcCC
Confidence 000110 011 1225778899999999999997 88877544332 22 367899999985
Q ss_pred chh
Q 024738 221 EEL 223 (263)
Q Consensus 221 ~~~ 223 (263)
+..
T Consensus 231 ~~~ 233 (343)
T TIGR01420 231 SAA 233 (343)
T ss_pred CHH
Confidence 543
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.6e-08 Score=90.45 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=48.6
Q ss_pred eEEEEeEEEEECCCcccccccee-----------ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILR-----------DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~-----------~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.++++||++.|++. ..+|+ |+++.|.+|+.++|+||.|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~e----r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNE----RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCc----cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 69999999999864 25786 99999999999999999999999999999997754
|
Members of this family differ in the specificity of RNA binding. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=73.36 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (263)
.+..+.|.||.|+|||||++.++.........+ .++.... .. . ...... ....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v------~~~~~~~----~~-~--~~~~~~--------------~~~~ 70 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF------LYLNASD----LL-E--GLVVAE--------------LFGH 70 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe------EEEehhh----hh-h--hhHHHH--------------Hhhh
Confidence 578999999999999999999999875222222 1221110 00 0 000000 0000
Q ss_pred HHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCCcEEEEEccC
Q 024738 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD---SGEVTALWVTHR 219 (263)
Q Consensus 143 l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~---~~~~tiiivtH~ 219 (263)
. .+......+...++.++++||.-.. ++.....+.+.+...... ..+.++|+++++
T Consensus 71 ~--------------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 71 F--------------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred h--------------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 0 5566667777889999999998665 566667778888776431 246788999987
Q ss_pred cc
Q 024738 220 LE 221 (263)
Q Consensus 220 ~~ 221 (263)
..
T Consensus 130 ~~ 131 (151)
T cd00009 130 PL 131 (151)
T ss_pred cc
Confidence 65
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.4e-08 Score=91.25 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=54.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.++.++++..|... ..+++++ |++.+|+.++|+|+||+|||||+++|+|+..|+.|.+.+.|
T Consensus 129 ~~~r~~v~~~l~tG----i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iG 190 (433)
T PRK07594 129 AMVRQPITQPLMTG----IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG 190 (433)
T ss_pred ceeccCHhheeCCC----ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEEC
Confidence 58888888888543 4699999 99999999999999999999999999999999988766543
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-08 Score=93.32 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=53.6
Q ss_pred EEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 36 CSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 36 ~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
+.|+++.|+.. .+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+..
T Consensus 187 ~~d~~~v~Gq~-----~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~ 245 (506)
T PRK09862 187 QHDLSDVIGQE-----QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES 245 (506)
T ss_pred ccCeEEEECcH-----HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence 45888888764 489999999999999999999999999999999999999999988753
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.4e-08 Score=71.48 Aligned_cols=51 Identities=33% Similarity=0.435 Sum_probs=39.2
Q ss_pred CCCCCCCChHHHHH-HHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 153 QRPVQTLSGGQKQR-VAIAGAL------AE------ACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 153 ~~~~~~LSgGqkqR-v~lAral------~~------~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
.+..+.+||||+|. +.+|.++ .. .|.+++|||||++||+.....++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 46778999999954 3333332 23 3799999999999999999999998864
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-08 Score=66.88 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=31.9
Q ss_pred eeceeeEEeC-CCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 024738 54 LRDCSFSVPS-GQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92 (263)
Q Consensus 54 L~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~ 92 (263)
+++.++++.+ |.++.|.||||||||||+.+|.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4566778876 56999999999999999999887766544
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=86.84 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=42.1
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+..
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~ 102 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIAL 102 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 4699999 999999999999999999999999999999998876644
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.8e-08 Score=80.78 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
+|++++|+|+||||||||+++|+|++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5999999999999999999999999876
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-07 Score=78.03 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=88.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
+++|+|..||||||+.+.+.-.. |-..++ -+ .+...+... + . .-..++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~----~~~~i~-------~D--------~~~~~~~~~----~---~---~~~~~i~~~ 51 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY----HFPVID-------AD--------KIAHQVVEK----G---S---PAYEKIVDH 51 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc----CCeEEe-------CC--------HHHHHHHhc----C---C---hHHHHHHHH
Confidence 47999999999999999988653 111111 00 111111110 0 0 112234455
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch--h
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE--L 223 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~--~ 223 (263)
+|-+ ..+. -|+-+|..||.++..+|+.+..+| +.+||..++.+.+.+.+... .|.+||+.+|.+.+ +
T Consensus 52 fg~~-i~~~------~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~--~~~~vvi~~pll~e~~~ 120 (188)
T TIGR00152 52 FGAQ-ILNE------DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS--KLAYVLLDVPLLFENKL 120 (188)
T ss_pred HCHH-HhCC------CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc--CCCEEEEEchHhhhCCc
Confidence 5522 1111 388999999999999999998887 88999999999999988642 24689999999965 4
Q ss_pred -hcCCEEEEEeCC
Q 024738 224 -EYADGAFYMEDG 235 (263)
Q Consensus 224 -~~~d~v~~l~~G 235 (263)
..||.+++++.+
T Consensus 121 ~~~~D~vv~V~~~ 133 (188)
T TIGR00152 121 RSLCDRVIVVDVS 133 (188)
T ss_pred HHhCCEEEEEECC
Confidence 479999998865
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-07 Score=87.99 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=41.6
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEEc
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN---GHVYVK 98 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~ 98 (263)
..+++++ |++.+|++++|+|+||+|||||+++|++...++. |.|..+
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~r 188 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGER 188 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeC
Confidence 3699999 9999999999999999999999999999988875 555443
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-07 Score=87.80 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=43.6
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
..+++++ |++.+|++++|+|+||+|||||+++|+|..+++.|.|.+.+
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iG 198 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIG 198 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEc
Confidence 4689999 99999999999999999999999999999999988776543
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=81.42 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=41.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
+++++.++.+++|++++++||||+||||++..|++......|. .+++++..+.
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----~~V~lit~D~ 177 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----SKVALLTTDS 177 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----CeEEEEeccc
Confidence 4678888999999999999999999999999999865323231 2456666554
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-07 Score=81.23 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=32.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
++|++++|+||||||||||++.|++++++ ..++++.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------~~~~~i~~D~ 42 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--------LEIVIISQDN 42 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--------cCCeEecccc
Confidence 57999999999999999999999999875 2345566654
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-06 Score=86.28 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=48.3
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh----------hcCCEEEEEeCCE
Q 024738 174 AEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL----------EYADGAFYMEDGK 236 (263)
Q Consensus 174 ~~~p~llllDEPts~LD-~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~----------~~~d~v~~l~~G~ 236 (263)
-.+|.++++|||+.+|| +..+..+.+.++.+.+. |.+++++||+++.+ +.|+..++|.+.+
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~--~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK--NVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 35899999999999999 78888899999887643 56999999998743 2366667776643
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=81.97 Aligned_cols=140 Identities=22% Similarity=0.267 Sum_probs=79.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
=+.+|+++.|.|++|+|||||+..++.......+.+ .|+.-+. +..+ +...+...++..+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kv------lYvs~EE-------s~~q-i~~ra~rlg~~~~------ 149 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKV------LYVSGEE-------SLQQ-IKMRAIRLGLPEP------ 149 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcE------EEEECcC-------CHHH-HHHHHHHcCCChH------
Confidence 589999999999999999999998877654443333 2333211 1111 1111111111110
Q ss_pred HHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHhcCCC
Q 024738 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL---------DESDQFGVIEAVKNLLGDSGE 210 (263)
Q Consensus 140 ~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L---------D~~~~~~l~~~l~~l~~~~~~ 210 (263)
.+.+ ..+.+-. +-. +.+--.+|+++++|.-++=. +....+++...|.+++++ .|
T Consensus 150 -----~l~~-------~~e~~~~--~I~--~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~-~g 212 (454)
T TIGR00416 150 -----NLYV-------LSETNWE--QIC--ANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT-RG 212 (454)
T ss_pred -----HeEE-------cCCCCHH--HHH--HHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH-hC
Confidence 1101 0111111 111 11123589999999865421 123345566667777664 47
Q ss_pred cEEEEEccCcch--------hh-cCCEEEEEeCCE
Q 024738 211 VTALWVTHRLEE--------LE-YADGAFYMEDGK 236 (263)
Q Consensus 211 ~tiiivtH~~~~--------~~-~~d~v~~l~~G~ 236 (263)
.|+++++|.... ++ .+|.|+.|+.++
T Consensus 213 iTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 213 IAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred CEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 999999996543 44 589999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.5e-06 Score=74.63 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=82.2
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHH-Hh--hccCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADV-AF--GLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~-~~--~~~~~ 128 (263)
+.|+.+.--+.+|+++.|.|++|+|||||+..++--.-...| ..+.|+.-+... ..+...+ .. +....
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g-----~~vl~iS~E~~~----~~~~~r~~~~~~~~~~~ 88 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHG-----VRVGTISLEEPV----VRTARRLLGQYAGKRLH 88 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC-----ceEEEEEcccCH----HHHHHHHHHHHhCCCcc
Confidence 468888878999999999999999999999877654322212 123343332110 0111111 11 11100
Q ss_pred CCC--hHHHHHHHHHHHHHcC-CCc-ccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH--------HHH
Q 024738 129 NLT--HDEVRSKVAKALDAVG-MSN-YLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDE--------SDQ 194 (263)
Q Consensus 129 ~~~--~~~~~~~~~~~l~~~~-l~~-~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~--------~~~ 194 (263)
... .....+.+..+++.+. ... ........++- ..-+..++.++ .+|+++++|..+.-.+. ...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~ 166 (271)
T cd01122 89 LPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSM--DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKAL 166 (271)
T ss_pred cCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCH--HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHH
Confidence 000 0111223333444332 111 11112222222 33445555444 48999999997664432 123
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccC
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHR 219 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~ 219 (263)
..++..|++++++ .++||++++|-
T Consensus 167 ~~~~~~L~~la~~-~~vtvll~sq~ 190 (271)
T cd01122 167 DEIMTKLRGFATE-HGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHHHHH-hCCEEEEEecc
Confidence 4566777777664 47899999983
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-07 Score=87.53 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=42.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
..+++++ |++.+|+.++|+|+||+|||||+++|+|...|+.|.+..
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~ 178 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIAL 178 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 3689999 999999999999999999999999999999999887755
|
|
| >TIGR01070 mutS1 DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=87.96 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
+.++.++|+||+..|-|+.....+...+.+...+..+..++++||..+...
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 468899999999777666665554443333222223568899999987644
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=76.71 Aligned_cols=37 Identities=35% Similarity=0.474 Sum_probs=32.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..|.+++| ++.|+.+.|+||+|+|||+|+.+|+....
T Consensus 91 ~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 91 QSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred HHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35778888 99999999999999999999999976543
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-07 Score=78.90 Aligned_cols=28 Identities=46% Similarity=0.603 Sum_probs=26.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
++|++++|+||+|||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.7e-07 Score=78.47 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=34.2
Q ss_pred cceeceeeEEeCCC-EEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 52 PILRDCSFSVPSGQ-LWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge-~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.++..+++.++++. +++|.||||+|||||++.++..+.+
T Consensus 30 ~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 47888888888766 8999999999999999999998765
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 263 | ||||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-24 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-24 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-19 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 9e-19 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-17 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-17 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 5e-16 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-16 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-15 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-15 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-15 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-15 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-15 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-15 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-13 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-13 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 5e-13 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-12 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-12 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-12 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-12 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-11 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-11 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 7e-11 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-11 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-11 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-10 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-10 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-10 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-10 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-10 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-10 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 6e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 7e-10 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-09 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-09 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-09 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-09 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-09 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 7e-09 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-08 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-08 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-08 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-08 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-08 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-08 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-07 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 5e-07 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 5e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 8e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-06 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-06 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-05 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 4e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 4e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 4e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 5e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 9e-04 |
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 6e-73
Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
++ LNY+ + L+ + ++ G++ +LG NG GKSTL + G+LKP++G
Sbjct: 8 LKVEELNYNYSDGT----HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 94 HVYVK------RPKS---------FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK 138
+ K VFQ+PD+Q+ +V DV+FG N+ L DE+R +
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR 123
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
V AL G+ + +P LS GQK+RVAIAG L KVL+LDE T LD ++
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 199 EAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQ 240
+ + + + G +T + TH ++ Y D F M++G++++Q
Sbjct: 184 KLLVEMQKELG-ITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 3e-68
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 16/221 (7%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
IE N+++ + L + S + G+ ++ G G GKSTLL+++AGL++PT+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 93 GHVYVK-RPKS---------FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142
G V K FQ P+ Q V +VAF + N D V V KA
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP-LVKKA 120
Query: 143 LDAVGMS--NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
++ VG+ ++ R LSGG+K+RVAIA + +L+LDE LD + ++
Sbjct: 121 MEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 201 VKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQ 240
V+ + T + ++H +E + + D +E GK V
Sbjct: 181 VEKW--KTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 3e-51
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 13/211 (6%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
A+ NL + + + + +F + G + +LG NGCGKSTLL +L G+ +P
Sbjct: 4 ALSVENLGFYYQAEN----FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 93 GHVYVKRPKSFVFQNPDHQVVMP-TVEADVAFG----LGNLNLTHDEVRSKVAKALDAVG 147
G + V + FV Q +V V G + +ALD +
Sbjct: 60 GKIEVYQSIGFVPQF--FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLN 117
Query: 148 MSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD 207
+++ +R +LSGGQ+Q + IA A+A CK++LLDE T+ LD ++Q V+ + +L
Sbjct: 118 LTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS 177
Query: 208 SGEVTALWVTHRLEE-LEYADGAFYMEDGKI 237
+T ++ TH+ + + A+ +
Sbjct: 178 QN-MTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-48
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 22/219 (10%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ N+ +++ K + L + + V G+ ++LGPNG GK+TLL+ ++GLL P +G
Sbjct: 2 IQLKNVGITLSGKGYE-RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 94 HVYV--------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145
++++ + + P+ + TV V L D + L A
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL----EMLKA 114
Query: 146 VGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204
+ + L+R + LS GQ V + ALA +++ LDE +D + + +
Sbjct: 115 LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR----HVISRY 170
Query: 205 LGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQAD 242
+ + G + VTH L+ Y + Y G +
Sbjct: 171 IKEYG-KEGILVTHELDMLNLYKEYKAYFLVGNRLQGPI 208
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 3e-44
Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 34/229 (14%)
Query: 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88
+ IE + K +R SF + G++ LLGP+G GK+T+L+++AGL
Sbjct: 10 HGSMTIEFVG----VEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65
Query: 89 KPTNGHVYV-----------KRPKSFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHD 133
+PT G V++ KR VFQN H M TV +V+FGL + D
Sbjct: 66 RPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQ-H---M-TVYDNVSFGLREKRVPKD 120
Query: 134 EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD--- 190
E+ ++V + L + + +Y R LSGGQ+QRVA+A ALA +VLL DE +D
Sbjct: 121 EMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 191 -ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKI 237
+ V+ + + G VT+++VTH EE LE AD + +G +
Sbjct: 181 RRELRT----FVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNV 224
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-44
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 22/208 (10%)
Query: 39 LNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK 98
+Y KK + +L ++ +++G NG GK+TL+K+LAG LKP G K
Sbjct: 354 FSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPK 412
Query: 99 -----RPK--SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY 151
+P+ + F Q+ + + + ++ V K L + +
Sbjct: 413 LNVSMKPQKIAPKFPGTVRQLFFKKIRGQ---------FLNPQFQTDVVKPL---RIDDI 460
Query: 152 LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211
+ + VQ LSGG+ QRVAI AL + L+DE + +LD + + ++ + +
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-K 519
Query: 212 TALWVTHRLEELEY-ADGAFYMEDGKIV 238
TA V H Y AD E
Sbjct: 520 TAFIVEHDFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 3e-42
Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 33 AIECSNLNYSITKK---QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89
AI+ NL ++ + + GQ+ L+G NG GKST LK+LAG K
Sbjct: 69 AIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQK 128
Query: 90 PTNGHV------------------------YVKRPKSFVFQNPDHQVVMPTVEADVAFGL 125
P G ++ + + + ++ V
Sbjct: 129 PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVG 188
Query: 126 GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185
L L ++ V + + + + N L+R ++ LSGG+ QR AI + + V + DE
Sbjct: 189 ELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEP 248
Query: 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIV 238
+++LD + + +++LL + V H L L+Y +D + V
Sbjct: 249 SSYLDVKQRLNAAQIIRSLL-APT-KYVICVEHDLSVLDYLSDFVCIIYGVPSV 300
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 8e-44
Identities = 66/244 (27%), Positives = 107/244 (43%), Gaps = 28/244 (11%)
Query: 21 HPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTL 80
H S + S + I+ + + ++ IL+ S+ + G W+L G NG GK+TL
Sbjct: 9 HSSGLVPRGSHMLIQLDQIG-----RMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTL 63
Query: 81 LKVLAGLLKPTNGHVYV---KRPKS------------FVFQNPDHQVVMPTVEADV---- 121
L +L T+G V + K FV + + DV
Sbjct: 64 LNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG 123
Query: 122 AFG-LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180
AF +G DE+R++ + L VGMS Q+ + LS G+KQRV IA AL +VL
Sbjct: 124 AFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVL 183
Query: 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVM 239
+LDE LD + ++ + +L + ++VTH +EE+ ++DG+ +
Sbjct: 184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI- 242
Query: 240 QADG 243
G
Sbjct: 243 -QQG 245
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 2e-43
Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 26/208 (12%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------- 97
P+L D S S+ G++ ++G +GCGK+TLL+ LAG +P +G + +
Sbjct: 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLP 76
Query: 98 --KRPKSFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY 151
+R ++ Q P H + TV ++A+GLGN + R ++ L+ G+S
Sbjct: 77 VRERRLGYLVQEGVLFP-H---L-TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISEL 131
Query: 152 LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211
R LSGGQ+QR A+A ALA +++LLDE + LDE + + E + L +G
Sbjct: 132 AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG-K 190
Query: 212 TALWVTHRLEE-LEYADGAFYMEDGKIV 238
+A++V+H EE L+YAD M+ G+I+
Sbjct: 191 SAVFVSHDREEALQYADRIAVMKQGRIL 218
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 7e-40
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK------------- 98
L S V +G++ L+GPNG GKSTLL +AG+ G +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 72
Query: 99 RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158
++++ Q V + + A+ + + L R
Sbjct: 73 LHRAYLSQQQTPPFAT-PVWHYLTLHQ----HDK-TRTELLNDVAGALALDDKLGRSTNQ 126
Query: 159 LSGGQKQRVAIAGALA-------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211
LSGG+ QRV +A + A ++LLLDE LD + Q + + + L G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA-LSQQG-L 184
Query: 212 TALWVTHRLEE-LEYADGAFYMEDGKIVMQADG 243
+ +H L L +A A+ ++ GK++ A G
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKML--ASG 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 5e-39
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 32/190 (16%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFVFQN----PDHQVV 113
LLGP G GKS L+++AG++KP G V + +R FV Q+ P H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP-H--- 84
Query: 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173
+ +V ++A+GL N+ E +V + + +G+++ L R LSGG++QRVA+A AL
Sbjct: 85 L-SVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL 141
Query: 174 AEACKVLLLDELTTFLD----ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADG 228
++LLLDE + +D E ++ + + V L VTH L E AD
Sbjct: 142 VIQPRLLLLDEPLSAVDLKTKGVLM---EE-LRFVQREFD-VPILHVTHDLIEAAMLADE 196
Query: 229 AFYMEDGKIV 238
M +G+IV
Sbjct: 197 VAVMLNGRIV 206
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 6e-39
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------KRPK-SFVF 105
L + G++ ++GPNG GK+T +K+LAG+ +PT G + K +
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY 360
Query: 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165
+ +++ L ++ + + L +G+ + R V LSGG+ Q
Sbjct: 361 EGTVYEL------------LSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQ 408
Query: 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225
RVAIA L + LLDE + +LD + V A+++L+ + TAL V H + ++Y
Sbjct: 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDY 467
Query: 226 -ADGAFYMEDGKIVMQADGVSILNF 249
+D E G+ + +
Sbjct: 468 VSDRLMVFE-GEPGKYGRALPPMGM 491
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 9e-32
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 24/201 (11%)
Query: 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP------TNGHVYVKRPK---------- 101
V G + ++GPNG GKST +K+LAG L P + ++ +
Sbjct: 41 LPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK 100
Query: 102 ---SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158
+ Q V +A G L + K+ + + A+ + N L+R +Q
Sbjct: 101 LKNGEIRPVVKPQYVDLIPKA--VKGKVIELLKKADETGKLEEVVKALELENVLEREIQH 158
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LSGG+ QRVAIA AL DE +++LD + A++ L + G + L V H
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS-EEG-KSVLVVEH 216
Query: 219 RLEELEY-ADGAFYMEDGKIV 238
L L+Y +D + V
Sbjct: 217 DLAVLDYLSDIIHVVYGEPGV 237
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 8e-39
Identities = 54/246 (21%), Positives = 103/246 (41%), Gaps = 19/246 (7%)
Query: 23 SRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLK 82
+ ++ ++ I KK L + G++ +LGPNG GK+T +
Sbjct: 255 KEVSDLDLSKDLKTKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFAR 312
Query: 83 VLAGLLKPTNGHVYV-KRPKSF----VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137
+L G + G V K+ S+ +F N D TV+ + + T
Sbjct: 313 ILVGEITADEGSVTPEKQILSYKPQRIFPNYDG-----TVQQYLENASKDALSTSSWFFE 367
Query: 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197
+V K L + L+ V LSGG+ Q++ IA LA+ + +LD+ +++LD +++ V
Sbjct: 368 EVTKRL---NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIVMQADGVSILNFIKSRQSS 256
+A+K + + + H L +Y AD + G+ S + K+ +
Sbjct: 425 AKAIKRVT-RERKAVTFIIDHDLSIHDYIADRIIVFK-GEPEKAGLATSPVTL-KTGMNE 481
Query: 257 YIERIN 262
++ +
Sbjct: 482 FLRELE 487
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 6e-37
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 26/207 (12%)
Query: 54 LRDCSFSVP-SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV----------------- 95
+ P + + +LG NG GK+T+LK+LAG + P G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 96 ---YVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYL 152
Y K S H++ + G N LT + R K + + + M+N
Sbjct: 74 IYNYFKELYS-NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212
+ LSGG QR+ +A +L V + D+ +++LD ++ + +A++ LL +
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK---Y 189
Query: 213 ALWVTHRLEELEY-ADGAFYMEDGKIV 238
+ V H L L+Y D + V
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSV 216
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-38
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 22/204 (10%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------KRPK-SFVF 105
L + G++ ++GPNG GK+T +K+LAG+ +PT G V K +
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEY 430
Query: 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165
+ ++++ + + + L +G+ + R V+ LSGG+ Q
Sbjct: 431 EGTVYELLSKIDSSKL------------NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQ 478
Query: 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225
RVAIA L + LLDE + +LD + V A+++L+ + TAL V H + ++Y
Sbjct: 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDY 537
Query: 226 -ADGAFYMEDGKIVMQADGVSILN 248
+D E G+ + +
Sbjct: 538 VSDRLIVFE-GEPGRHGRALPPMG 560
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-33
Identities = 54/227 (23%), Positives = 87/227 (38%), Gaps = 23/227 (10%)
Query: 33 AIECSNLNYSITKKQRK---LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89
AI NL + + + + V G + ++GPNG GK+T +K+LAG L
Sbjct: 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
Query: 90 PTNG------HVYVKRPKSFVFQNPDHQVVMPTVEADV-----------AFGLGNLNLTH 132
P ++ + QN ++ + V G L
Sbjct: 143 PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK 202
Query: 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192
+ K + + + + N L R + LSGG+ QRVAIA AL DE +++LD
Sbjct: 203 VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIV 238
+ V ++ L + L V H L L+Y +D + V
Sbjct: 263 QRLKVARVIRRLANEGK--AVLVVEHDLAVLDYLSDVIHVVYGEPGV 307
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-37
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 33/205 (16%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKS 102
L + S V SG+ +++LGP G GK+ L+++AG P +G + + K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 103 FVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158
FV+QN P H M V+ ++ FG+ + + +V + + + L R T
Sbjct: 76 FVYQNYSLFP-H---M-NVKKNLEFGM---RMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLD----ESDQFGVIEAVKNLLGDSGEVTAL 214
LSGG++QRVA+A AL K+LLLDE + LD E+ + + L + +T L
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE---M-LSVLHKKNK-LTVL 182
Query: 215 WVTHRLEE-LEYADGAFYMEDGKIV 238
+TH E AD + DGK++
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLI 207
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 7e-35
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 25/225 (11%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
A+ +L +K+ IL+ SF + G+++ L+GPNG GK+T L++++ L+KP++
Sbjct: 15 AVVVKDL-----RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 69
Query: 93 GHVYV------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN-LTHDEVRSKV 139
G V V ++ S++ + M + F + + E+ V
Sbjct: 70 GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM-QGIEYLRF-VAGFYASSSSEIEEMV 127
Query: 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199
+A + G+ ++ V T S G +++ IA AL ++ +LDE T+ LD + V +
Sbjct: 128 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 187
Query: 200 AVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIVMQADG 243
+K G +T L +H + E+E+ D + +G IV G
Sbjct: 188 ILKQ-ASQEG-LTILVSSHNMLEVEFLCDRIALIHNGTIV--ETG 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-34
Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 28/225 (12%)
Query: 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88
G +E +L + K V L + ++ G + GPNG GK+TLLK ++ L
Sbjct: 6 HHGSKLEIRDL----SVGYDKPV--LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59
Query: 89 KPTNGHVYV--------KRPKSFVFQNPDHQVVMPTVEADVAF--GLGNLNLTHDEVRSK 138
KP G + K F+ + + +VE + L + +++
Sbjct: 60 KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKI-SVEDYLKAVASLYGV----KVNKNE 114
Query: 139 VAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198
+ AL++V + + ++ + LS G +RV +A L ++ +LD+ +DE + V+
Sbjct: 115 IMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 199 EAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADG 243
+++ +L + G + + L D + D
Sbjct: 174 KSILEILKEKG-IVIISSREELSY---CDVNENLHKYSTK--IDK 212
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-30
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 25/154 (16%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------- 97
V L + + ++ +G+ + +LGP+G GK+T ++++AGL P+ G +Y
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 98 ---KRPKSFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN 150
R VFQ P + + T ++AF L N+ ++ +E+R +V + + + +
Sbjct: 78 PPEDRKIGMVFQTWALYP-N---L-TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
L + LSG Q+QRVA+A AL + +LLLDE
Sbjct: 133 VLNHFPRELSGAQQQRVALARALVKDPSLLLLDE 166
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-29
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 43/231 (18%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ N+ KK + IL+ S SV G+ ++G +G GKSTLL +L L PT G
Sbjct: 5 LRAENI-----KKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEG 59
Query: 94 HVYVK---------------RPKS--FVFQN----PD----HQVVMPTVEADVAFGLGNL 128
V+++ R + FVFQ P+ V++P ++
Sbjct: 60 KVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK------- 112
Query: 129 NLTHDEVRSKVAKALDAVGMSNYLQ-RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT 187
E + + L +G+ + L +P + LSGG++QRVAIA ALA +L DE T
Sbjct: 113 --PKKEAKERGEYLLSELGLGDKLSRKPYE-LSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 188 FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
LD ++ V++ + + G + + VTH E E M+DGK+V
Sbjct: 170 NLDSANTKRVMDIFLK-INEGG-TSIVMVTHERELAELTHRTLEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 7e-29
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 34 IECSNLN--YSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
++ N+ Y + ++ + L++ + ++ G+ ++GP+G GKST+L ++ L KPT
Sbjct: 2 VKLKNVTKTYKMGEEI---IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58
Query: 92 NGHVYVK---------------RPKS--FVFQN----PD----HQVVMPTVEADVAFGLG 126
G VY+ R FVFQ P V +P +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG---- 114
Query: 127 NLNLTHDEVRSKVAKALDAVGMSNYLQ--RPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
++ +E R + + L + +P Q LSGGQ+QRVAIA ALA ++L D+
Sbjct: 115 --AMSGEERRKRALECLKMAELEERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADQ 171
Query: 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
T LD +++ +K L + G T + VTH + + + Y++DG++
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDINVARFGERIIYLKDGEVE 224
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 9e-29
Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 30/249 (12%)
Query: 12 HLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLG 71
H H H S + I+ SN+ + R + L + S VP+GQ++ ++G
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIG 61
Query: 72 PNGCGKSTLLKVLAGLLKPTNGHVYV---------------KRPK-SFVFQNPDHQVVMP 115
+G GKSTL++ + L +PT G V V R + +FQ H ++
Sbjct: 62 ASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ---HFNLLS 118
Query: 116 --TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173
TV +VA L N DEV+ +V + L VG+ + LSGGQKQRVAIA AL
Sbjct: 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178
Query: 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNL---LGDSGEVTALWVTHRLEELEY-ADGA 229
A KVLL D+ T+ LD + ++E +K++ LG +T L +TH ++ ++ D
Sbjct: 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLG----LTILLITHEMDVVKRICDCV 234
Query: 230 FYMEDGKIV 238
+ +G+++
Sbjct: 235 AVISNGELI 243
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-27
Identities = 60/150 (40%), Positives = 79/150 (52%), Gaps = 22/150 (14%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPK-- 101
L + + + G+ LLGP+G GKSTLL +AG+ KPT+G +Y PK
Sbjct: 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDR 75
Query: 102 --SFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR- 154
VFQN P H M TV ++AF L +E+ KV + + + L R
Sbjct: 76 NVGLVFQNWALYP-H---M-TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY 130
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
P Q LSGGQ+QRVAIA AL + +VLLLDE
Sbjct: 131 PWQ-LSGGQQQRVAIARALVKEPEVLLLDE 159
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-27
Identities = 67/254 (26%), Positives = 116/254 (45%), Gaps = 48/254 (18%)
Query: 15 SPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNG 74
+ P+ ++G ++ S + ++ R +P+L+ S V GQ L+G +G
Sbjct: 1017 YSTQGLKPNMLEG-----NVQFSGVVFNY--PTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 75 CGKSTLLKVLAGLLKPTNGHVYV-------KRPKSF------VFQNPDHQVVMP-TVEAD 120
CGKST++++L P G V++ + V Q P ++ ++ +
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP---ILFDCSIAEN 1126
Query: 121 VAFGLGNLNLTHDEVRS--KVAKALD-----------AVGMSNYLQRPVQTLSGGQKQRV 167
+A+G + ++++E+ K A VG + Q LSGGQKQR+
Sbjct: 1127 IAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD-----KGTQ-LSGGQKQRI 1180
Query: 168 AIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226
AIA AL +LLLDE T+ LD ES++ V EA+ T + + HRL ++ A
Sbjct: 1181 AIARALVRQPHILLLDEATSALDTESEKV-VQEALDKA---REGRTCIVIAHRLSTIQNA 1236
Query: 227 DGAFYMEDGKIVMQ 240
D +++GK+
Sbjct: 1237 DLIVVIQNGKVKEH 1250
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-27
Identities = 74/233 (31%), Positives = 104/233 (44%), Gaps = 51/233 (21%)
Query: 48 RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--------- 98
RK V IL+ + V SGQ L+G +GCGKST ++++ L P +G V +
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 99 ---RPK-SFVFQNPDHQVVM--PTVEADVAFGLGNLNLTHDEVRS--KVAKALD------ 144
R V Q P V+ T+ ++ +G ++T DE+ K A A D
Sbjct: 460 RYLREIIGVVSQEP----VLFATTIAENIRYGR--EDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 145 -----AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199
VG +R Q LSGGQKQR+AIA AL K+LLLDE T+ LD + V
Sbjct: 514 HQFDTLVG-----ERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 200 AVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV--------MQADGV 244
A+ T + + HRL + AD + G IV M+ G+
Sbjct: 568 ALDKA---REGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGI 617
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-27
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 50/234 (21%)
Query: 48 RKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK--------- 98
V +L+ +F++ G++ L+GPNG GKST+ +L L +PT G V +
Sbjct: 29 HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH 88
Query: 99 ---RPK-SFVFQNPDHQVVM--PTVEADVAFGLGNLNLTHDEVRS--KVAKALD------ 144
+ + V Q P ++ + ++A+GL T +E+ + + A D
Sbjct: 89 HYLHTQVAAVGQEP----LLFGRSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFP 143
Query: 145 -----AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVI 198
VG + Q LSGGQ+Q VA+A AL ++L+LD T+ LD + V
Sbjct: 144 QGYDTEVG-----ETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR-VQ 196
Query: 199 EAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV--------MQADGV 244
+ + T L +T +L E A ++++G + M+ G
Sbjct: 197 RLLYESPEWASR-TVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGC 249
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 64/150 (42%), Positives = 83/150 (55%), Gaps = 22/150 (14%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPK-- 101
V + SF V G+ LLGP+GCGK+T L +LAG+ KPT+G +Y PK
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYR 75
Query: 102 --SFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR- 154
VFQN P H M TV ++AF L ++ DEV +V + + + N L R
Sbjct: 76 EVGMVFQNYALYP-H---M-TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
P Q LSGGQ+QRVA+A AL + KVLL DE
Sbjct: 131 PTQ-LSGGQQQRVALARALVKQPKVLLFDE 159
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-25
Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 22/150 (14%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPK-- 101
+ + ++ G+ +LLGP+GCGK+T L+++AGL +PT G +Y PK
Sbjct: 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR 83
Query: 102 --SFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR- 154
S VFQ+ P H M TV ++AF L DE+ +V A + + + L R
Sbjct: 84 NISMVFQSYAVWP-H---M-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY 138
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
P Q LSGGQ+QRVA+A A+ VLL+DE
Sbjct: 139 PAQ-LSGGQRQRVAVARAIVVEPDVLLMDE 167
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 3e-24
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 42/215 (19%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------RPKS-- 102
ILRD SF + GP+G GKST+ +L +PT G + + ++
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75
Query: 103 ----FVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVRS--KVAKALD----------- 144
FV Q+ +M T+ ++ +GL + T +++ +A A
Sbjct: 76 SQIGFVSQDS---AIMAGTIRENLTYGL-EGDYTDEDLWQVLDLAFARSFVENMPDQLNT 131
Query: 145 AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKN 203
VG +R V+ +SGGQ+QR+AIA A K+L+LDE T LD ES+ V +A+ +
Sbjct: 132 EVG-----ERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM-VQKALDS 184
Query: 204 LLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
L+ T L + HRL + AD +++E G+I
Sbjct: 185 LMKGR---TTLVIAHRLSTIVDADKIYFIEKGQIT 216
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 4e-24
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 45/216 (20%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPKS-- 102
IL + + S+ G++ ++G +G GKSTL K++ P NG V + P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 103 ----FVFQNPDHQVVM--PTVEADVAFGLGNLNLTHDEVRS--KVAKALD---------- 144
V Q+ V+ ++ +++ N ++ ++V K+A A D
Sbjct: 83 RQVGVVLQDN----VLLNRSIIDNISLA--NPGMSVEKVIYAAKLAGAHDFISELREGYN 136
Query: 145 -AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVK 202
VG ++ LSGGQ+QR+AIA AL K+L+ DE T+ LD ES+ ++ +
Sbjct: 137 TIVG-----EQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV-IMRNMH 189
Query: 203 NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ T + + HRL ++ AD ME GKIV
Sbjct: 190 KICKGR---TVIIIAHRLSTVKNADRIIVMEKGKIV 222
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 7e-24
Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 28/156 (17%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--KR--------- 99
V +R+ S V G+ +LLGP+GCGK+T L+++AGL +P+ G +Y+ K
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 100 --PK----SFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS 149
PK + VFQ+ P H M TV ++AF L + E+ +V + + +G++
Sbjct: 76 VPPKDRDIAMVFQSYALYP-H---M-TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT 130
Query: 150 NYLQR-PVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
L R P + LSGGQ+QRVA+ A+ +V L+DE
Sbjct: 131 ELLNRKPRE-LSGGQRQRVALGRAIVRKPQVFLMDE 165
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-23
Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 44/219 (20%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--------------- 97
+L+ + + G++ +++GP+G GKST L+ L L G + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 98 KRPKSFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ 153
+ VFQ P V+ A + ++ +K + LD VG+ +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKV----RKWPREKAEAKAMELLDKVGLKDKAH 154
Query: 154 R-PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-----ESDQFGVIEAVKNLLGD 207
P LSGGQ QRVAIA ALA K++L DE T+ LD E V+ +K L +
Sbjct: 155 AYPDS-LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE-----VLSVMKQ-LAN 207
Query: 208 SGEVTALWVTHRLEEL----EYADGAFYMEDGKIVMQAD 242
G +T + VTH E+ E D +M+ G I+ +
Sbjct: 208 EG-MTMVVVTH---EMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-22
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 22/150 (14%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--KR-----PK-- 101
V + +D + + G+ + +GP+GCGKSTLL+++AGL T+G +++ KR P
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAER 75
Query: 102 --SFVFQN----PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQR- 154
VFQ+ P H + +V +++FGL + + +V + + + +++ L R
Sbjct: 76 GVGMVFQSYALYP-H---L-SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK 130
Query: 155 PVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
P LSGGQ+QRVAI L V LLDE
Sbjct: 131 PKA-LSGGQRQRVAIGRTLVAEPSVFLLDE 159
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 2e-22
Identities = 67/228 (29%), Positives = 99/228 (43%), Gaps = 58/228 (25%)
Query: 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------------- 98
+L+ S +G + ++G +G GKST L+ + L KP+ G + V
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 99 -----------RPK-SFVFQN----PDHQVVMPTV-EADVAFGLGNLNLTHDEVRSKVAK 141
R + + VFQ+ H V+ V EA + L L+ + R + K
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVMEAPIQV----LGLSKHDARERALK 135
Query: 142 ALDAVGMSNYLQR--PVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-----ESDQ 194
L VG+ Q PV LSGGQ+QRV+IA ALA VLL DE T+ LD E
Sbjct: 136 YLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE--- 191
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEEL----EYADGAFYMEDGKIV 238
V+ ++ L + G T + VTH E+ + ++ GKI
Sbjct: 192 --VLRIMQQ-LAEEG-KTMVVVTH---EMGFARHVSSHVIFLHQGKIE 232
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-21
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 31/209 (14%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------K 98
L+D SF+V GQ L+GP+G GKST+L++L ++G + + +
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLR 127
Query: 99 RPKSFVFQNPDHQVVM--PTVEADVAFGLGNLNLTHDEVRS--KVAKALDAV-GMSNYLQ 153
V Q+ V+ T+ ++ +G + +DEV + + A DA+ +
Sbjct: 128 SHIGVVPQDT----VLFNDTIADNIRYG--RVTAGNDEVEAAAQAAGIHDAIMAFPEGYR 181
Query: 154 RPV----QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSG 209
V LSGG+KQRVAIA + +A ++LLDE T+ LD S++ + ++ + +
Sbjct: 182 TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR- 240
Query: 210 EVTALWVTHRLEELEYADGAFYMEDGKIV 238
T + V HRL + AD ++DG IV
Sbjct: 241 --TTIVVAHRLSTVVNADQILVIKDGCIV 267
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-21
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 41/230 (17%)
Query: 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89
+ + N+ + P+L+D +F + GQL + G G GK++LL ++ G L+
Sbjct: 3 TTTEVVMENVTAFWEEGGT---PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59
Query: 90 PTNGHVYVKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVR-SKVAK--ALDA 145
P+ G + SF Q +MP T++ ++ FG +++DE R V K L+
Sbjct: 60 PSEGKIKHSGRISFCSQFS---WIMPGTIKENIIFG-----VSYDEYRYRSVIKACQLEE 111
Query: 146 ------------VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD--- 190
+G + + TLSGGQ+ R+++A A+ + + LLD +LD
Sbjct: 112 DISKFAEKDNIVLG-----EGGI-TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
E + F V L+ + T + VT ++E L+ AD + +G
Sbjct: 166 EKEIFE--SCVCKLMANK---TRILVTSKMEHLKKADKILILHEGSSYFY 210
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 3e-21
Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 47/231 (20%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+I N ++ + P L +FS+P G L ++G GCGKS+LL L +
Sbjct: 3 SITVRNATFTWARSDP---PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 93 GHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS--- 149
GHV +K ++V Q + ++ ++ FG +E + + A +
Sbjct: 60 GHVAIKGSVAYVPQQA--WIQNDSLRENILFG-----CQLEEPYYR--SVIQACALLPDL 110
Query: 150 NYLQRPVQT--------LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201
L +T LSGGQKQRV++A A+ + L D+ + AV
Sbjct: 111 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD------------PLSAV 158
Query: 202 ---------KNLLGDSGEV---TALWVTHRLEELEYADGAFYMEDGKIVMQ 240
+N++G G + T + VTH + L D M GKI
Sbjct: 159 DAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEM 209
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 4e-21
Identities = 43/212 (20%), Positives = 82/212 (38%), Gaps = 25/212 (11%)
Query: 11 PHLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLL 70
+ P+ D + G + + + K +L + + + +
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK-----ILLNKTQLRLKRARRYGIC 467
Query: 71 GPNGCGKSTLLKVLAGLLK---PTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGN 127
GPNGCGKSTL++ +A PT +V + D +V L
Sbjct: 468 GPNGCGKSTLMRAIANGQVDGFPTQEECRT----VYVEHDIDGTHSDTSV-------LDF 516
Query: 128 LNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186
+ + + + L G ++ + P+ LSGG K ++A+A A+ +LLLDE T
Sbjct: 517 VFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576
Query: 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
LD + ++ + +T++ ++H
Sbjct: 577 NHLDTVNVAWLVNYLNTC-----GITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 2e-10
Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 73 NGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132
G + ++ N + V + + EA + L
Sbjct: 823 LGENIGMKSERWVPMMSVDNAWIPRGE---LVESHSKMVAEVDMKEALASGQFRPL---- 875
Query: 133 DEVRSKVAKALDAVGMS--NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
R ++ + +G+ ++ LSGGQK ++ +A + +++LDE T +LD
Sbjct: 876 --TRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Query: 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY-ADGAFYMEDGKIV 238
+ +A+K G + +TH E + + + ++DG++
Sbjct: 934 RDSLGALSKALKEFEG-----GVIIITHSAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 9e-10
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97
P + D +F ++GPNG GKSTL+ VL G L PT+G VY
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 9e-21
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 39/231 (16%)
Query: 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88
+ + + S + P+L+D +F + GQL + G G GK++LL ++ G L
Sbjct: 29 NNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88
Query: 89 KPTNGHVYVKRPKSFVFQNPDHQVVMP-TVEADVAFGLGNLNLTHDEVR-SKVAKA--LD 144
+P+ G + SF QN +MP T++ ++ +G ++DE R V KA L+
Sbjct: 89 EPSEGKIKHSGRISFCSQNS---WIMPGTIKENI---IGV---SYDEYRYRSVIKACQLE 139
Query: 145 A------------VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-- 190
+G + + TLSGGQ+ R+++A A+ + + LLD +LD
Sbjct: 140 EDISKFAEKDNIVLG-----EGGI-TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 193
Query: 191 -ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
E + F V L+ + T + VT ++E L+ AD + +G
Sbjct: 194 TEKEIFE--SCVCKLMANK---TRILVTSKMEHLKKADKILILHEGSSYFY 239
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 1e-20
Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 46/221 (20%)
Query: 47 QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--------- 97
++ L+ +F +PSG L+G G GKST+ K+L G + +
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYN 87
Query: 98 ----KRPKSFVFQNPDHQVVM--PTVEADVAFGLGNLNLTHDEVRS--KVAKALD----- 144
+ V Q+ ++ T++ ++ +G L+ T +EV K A+ D
Sbjct: 88 RNSIRSIIGIVPQDT----ILFNETIKYNILYG--KLDATDEEVIKATKSAQLYDFIEAL 141
Query: 145 ------AVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGV 197
VG + ++ LSGG++QR+AIA L + K+++ DE T+ LD +++
Sbjct: 142 PKKWDTIVG-----NKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL-F 194
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+AV++L + T + + HRL + A+ + GKIV
Sbjct: 195 QKAVEDLRKNR---TLIIIAHRLSTISSAESIILLNKGKIV 232
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 4e-20
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------K 98
P L SFS+P G+ L+G +G GKST+ + +G + + +
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 99 RPKSFVFQNP----DHQVVMPTVEADVAFGLGNLNLTHDEVRS--KVAKALDAV-GMSNY 151
R + V QN D T+ ++A+ T +++ + A A++ + M
Sbjct: 417 RHFALVSQNVHLFND------TIANNIAYAA-EGEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 152 LQRPVQ----TLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLG 206
L + +LSGGQ+QRVAIA AL VL+LDE T+ LD ES++ + A+ L
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA-IQAALDELQK 528
Query: 207 DSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ T L + HRL +E AD +++G+I+
Sbjct: 529 NK---TVLVIAHRLSTIEQADEILVVDEGEII 557
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 1e-19
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 34/161 (21%)
Query: 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----VKRPKSFV---- 104
L S SV G + +++GPNG GKSTL+ V+ G LK G VY + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 105 -----FQN---------------PDHQVVMPTVEADV-AFGLGNLNLTHDEVRSKVAKAL 143
FQ + E+ + + +E+ K K L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEIC----PGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 144 DAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184
+ + +S+ R LSGGQ + V I AL K++++DE
Sbjct: 139 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-19
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------------K 98
P LR+ + +P+G+ L+G +G GKST+ ++ GH+ + +
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 99 RPKSFVFQNP----DHQVVMPTVEADVAFGLGNLNLTHDEVRS--KVAKALDAV-GMSNY 151
+ V QN D TV ++A+ + +++ ++A A+D + M N
Sbjct: 417 NQVALVSQNVHLFND------TVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNG 469
Query: 152 LQRPV----QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLG 206
L + LSGGQ+QR+AIA AL +L+LDE T+ LD ES++ + A+ L
Sbjct: 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA-IQAALDELQK 528
Query: 207 DSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+ T+L + HRL +E AD +EDG IV
Sbjct: 529 NR---TSLVIAHRLSTIEQADEIVVVEDGIIV 557
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 3e-19
Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 62/235 (26%)
Query: 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110
+ ++ VP GQ+ L+G NG GK+T L +AGL++ G + +F D
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI--------IFNGQDI 70
Query: 111 QVVMPTVEADVAFGLG----------------NLNL--THDEVRSKVAKALDAVGMSNY- 151
G+ NL + + + + + + L+ + +
Sbjct: 71 TNKPA--HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI----FS 124
Query: 152 -----LQRPVQ---TLSGGQKQRVAIAGALAEACKVLLLDE----LTTFLDESDQFGVIE 199
+R Q TLSGG++Q +AI AL K+L++DE L L + F VI+
Sbjct: 125 LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS-EVFEVIQ 183
Query: 200 AVKNLLGDSGEVTALWVTHRLEE------LEYADGAFYMEDGKIVMQADGVSILN 248
+ G T L V E L+ A + +E G+IV++ +L+
Sbjct: 184 KIN----QEG-TTILLV-----EQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 9e-18
Identities = 65/254 (25%), Positives = 108/254 (42%), Gaps = 47/254 (18%)
Query: 11 PHLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLL 70
+ + + G I+ ++++ + PIL+D + S+ G+ +
Sbjct: 322 YDIKNGVGAQPIEIKQG-----RIDIDHVSFQYNDNEA---PILKDINLSIEKGETVAFV 373
Query: 71 GPNGCGKSTLLKVLAGLLKPTNGHVYV-------------KRPKSFVFQNP----DHQVV 113
G +G GKSTL+ ++ T+G + + + V Q+ D
Sbjct: 374 GMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD---- 429
Query: 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDA----VGMSNYLQRPV----QTLSGGQKQ 165
TV+ ++ G T +EV + AK +A + + V LSGGQKQ
Sbjct: 430 --TVKENILLG--RPTATDEEVV-EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484
Query: 166 RVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224
R++IA +L+LDE T+ LD ES+ + EA+ L D T L V HRL +
Sbjct: 485 RLSIARIFLNNPPILILDEATSALDLESESI-IQEALDVLSKDR---TTLIVAHRLSTIT 540
Query: 225 YADGAFYMEDGKIV 238
+AD +E+G IV
Sbjct: 541 HADKIVVIENGHIV 554
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 2e-17
Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 41/255 (16%)
Query: 7 FTVTPHLLSPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQL 66
P + +++ ++G ++ N+ + + P+L +FSV G L
Sbjct: 320 LNEKPAIEEADNALALPNVEG-----SVSFENVEFRYFENTD---PVLSGVNFSVKPGSL 371
Query: 67 WMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK------------RPK-SFVFQNPDHQVV 113
+LG G GKSTL+ ++ L+ P G V V R S V Q V
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET----V 427
Query: 114 M--PTVEADVAFGLGNLNLTHDEVR--SKVAKALDAV-GMSNYLQRPVQ----TLSGGQK 164
+ T++ ++ +G + T DE+ +K+A+ D + + V+ SGGQK
Sbjct: 428 LFSGTIKENLKWG--REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485
Query: 165 QRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223
QR++IA AL + KVL+LD+ T+ +D +++ +++ +K T +T ++
Sbjct: 486 QRLSIARALVKKPKVLILDDCTSSVDPITEK-RILDGLKRYTKGC---TTFIITQKIPTA 541
Query: 224 EYADGAFYMEDGKIV 238
AD + +GK+
Sbjct: 542 LLADKILVLHEGKVA 556
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 5e-13
Identities = 52/218 (23%), Positives = 82/218 (37%), Gaps = 47/218 (21%)
Query: 50 LVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------------ 97
IL + SFS+ GQ LLG G GKSTLL LL G + +
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQ 91
Query: 98 -KRPKSFVFQNPDHQVVMPTVEADVAFGLG----NLNLTHDEVRSKVAKALDAVGMSNYL 152
++ + Q F G NL+ ++ K D VG+ + +
Sbjct: 92 WRKAFGVIPQKV------------FIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVI 138
Query: 153 QRPVQTL-----------SGGQKQRVAIAGALAEACKVLLLDELTTFLD-ESDQFGVIEA 200
++ L S G KQ + +A ++ K+LLLDE + LD + Q +
Sbjct: 139 EQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI-IRRT 197
Query: 201 VKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
+K D T + R+E + D +E+ K+
Sbjct: 198 LKQAFADC---TVILCEARIEAMLECDQFLVIEENKVR 232
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-11
Identities = 71/244 (29%), Positives = 104/244 (42%), Gaps = 63/244 (25%)
Query: 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP----TNG 93
+L SI + IL+ + VP G++ L+GPNG GKSTL K+LAG P G
Sbjct: 8 DLWASIDGE-----TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERG 60
Query: 94 HVYVK-----------RPKS--FV-FQNPDHQVVMPTV-------EADVAFGLGNLNLTH 132
+ + R + F+ FQ P V +P V A A + +
Sbjct: 61 EILLDGENILELSPDERARKGLFLAFQYP---VEVPGVTIANFLRLALQAKLGREVGVA- 116
Query: 133 DEVRSKVAKALDAVGM-SNYLQRPV-QTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190
E +KV KAL+ + +YL R + + SGG+K+R E ++L+L+ LD
Sbjct: 117 -EFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR-------NEILQLLVLEPTYAVLD 168
Query: 191 ESDQFG--------VIEAVKNLLGDSGEVTALWVTH--RLEELEY--ADGAFYMEDGKIV 238
E+D G V V + G AL +TH R+ L Y D M DG++V
Sbjct: 169 ETDS-GLDIDALKVVARGVNAMRGP--NFGALVITHYQRI--LNYIQPDKVHVMMDGRVV 223
Query: 239 MQAD 242
Sbjct: 224 ATGG 227
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-11
Identities = 69/271 (25%), Positives = 105/271 (38%), Gaps = 68/271 (25%)
Query: 15 SPPHSIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNG 74
S H H S + + +L+ S+ K ILR S V G++ ++GPNG
Sbjct: 3 SSHHHHHSSGLVP-RGSHMLSIKDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNG 56
Query: 75 CGKSTLLKVLAGLLKP----TNGHVYVK-----------RPKS--FV-FQNPDHQVVMPT 116
GKSTL LAG + T G V K R F+ FQ P V +P
Sbjct: 57 SGKSTLSATLAG--REDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYP---VEIPG 111
Query: 117 V-----------EADVAFGLGNLNLTHDEVRSKVAKALDAVGM-SNYLQRPVQT-LSGGQ 163
V G L+ + + + + + + M + L R V SGG+
Sbjct: 112 VSNQFFLQTALNAVRSYRGQETLDRF--DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 169
Query: 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFG--------VIEAVKNLLGDSGEVTALW 215
K+R + ++ +L+ LDESD G V + V +L + + +
Sbjct: 170 KKR-------NDILQMAVLEPELCILDESDS-GLDIDALKVVADGVNSLRDG--KRSFII 219
Query: 216 VTH--RLEELEYA--DGAFYMEDGKIVMQAD 242
VTH R+ L+Y D + G+IV D
Sbjct: 220 VTHYQRI--LDYIKPDYVHVLYQGRIVKSGD 248
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-10
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 29/208 (13%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV--------KRP--- 100
P+L+D +F + GQ L+GP G GK+T++ +L G + V KR
Sbjct: 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR 428
Query: 101 KSF--VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA--------VGMSN 150
S V Q D + TV+ ++ +G N T +E++ + AK + G
Sbjct: 429 SSIGIVLQ--DTILFSTTVKENLKYG--NPGATDEEIK-EAAKLTHSDHFIKHLPEGYET 483
Query: 151 YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210
L + LS GQ+Q +AI A K+L+LDE T+ +D + + A+ L+
Sbjct: 484 VLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGK-- 541
Query: 211 VTALWVTHRLEELEYADGAFYMEDGKIV 238
T++ + HRL ++ AD + DG+IV
Sbjct: 542 -TSIIIAHRLNTIKNADLIIVLRDGEIV 568
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 2e-10
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA------CKVLLLDEL 185
+ V + + +RP+ LSGG++ + +A LA + +L+LDE
Sbjct: 222 SEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEP 281
Query: 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227
T +LDE + +I ++ L + V+H E + AD
Sbjct: 282 TPYLDEERRRKLITIMERYLKKIP--QVILVSHDEELKDAAD 321
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-10
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 129 NLTHDEVRSKVAKALDAVGMSNY--LQRPVQTLSGGQKQRVAIAGALAEACK------VL 180
+ EV + + + + + +RP+ LSGG++ + +A LA + +L
Sbjct: 27 EGKYSEVVVRAEENKVRLFV-VWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLL 85
Query: 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227
+LDE T +LDE + +I ++ L + V+H E + AD
Sbjct: 86 ILDEPTPYLDEERRRKLITIMERYL-KKIP-QVILVSHDEELKDAAD 130
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 7e-09
Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 49/211 (23%)
Query: 41 YSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTL-LKVLA--GLLKPTNGHVY- 96
Y++++ Q L LR + + ++ G G GK+ + L V + + ++
Sbjct: 129 YNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 97 -----VKRPKSFV--FQNPDHQVVMP-TVEADVAFGLG-NLNLTHDEVRSKVAKA----- 142
P++ + Q +Q+ T +D + + ++ E+R +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 143 ---LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL---DELTTFLDESDQFG 196
L V Q A +CK+LL ++T FL +
Sbjct: 247 LLVLLNV------------------QNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTT 287
Query: 197 VIEAVKNLLG----DSGEVTALWVTHRLEEL 223
I + + + + ++ R ++L
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV-------LL 181
++ K + + + LSGG++ VA++ LA A + ++
Sbjct: 251 EFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECII 310
Query: 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227
LDE T +LDE+ + + E + + + +TH E + AD
Sbjct: 311 LDEPTVYLDENRRAKLAEIFRKVKSIPQMII---ITHHRELEDVAD 353
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 1e-04
Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 16/170 (9%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNL 128
+ G G GK+TL+K + L + + V P + F +
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEE------------VRDPETKKRTGFRIITT 52
Query: 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
SK + VG + + L A A + KV+++DE+
Sbjct: 53 EGKKKIFSSKFFTSKKLVGSYGVNVQYFEEL-AIPILERAYREAKKDRRKVIIIDEIGKM 111
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
S +F + V+ ++ V + + + ++
Sbjct: 112 ELFSKKF--RDLVRQIM-HDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI 158
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 68 MLLGPNGCGKSTLLKVLA---GLLKPTNGHVYVKRPKS 102
+L+G GCGK+ K + + VYV K
Sbjct: 927 ILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKV 964
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 153 QRPVQTLSGGQKQRVAIAGALAEACKV------LLLDELTTFLDESDQFGVIEAVKNL 204
+RP + LSGG++ ++I+ A++ A +DE + LD ++ + +K L
Sbjct: 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL 331
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 263 | |||
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 100.0 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.97 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.97 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.96 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.96 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.95 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.94 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.94 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.93 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.93 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.93 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.92 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.92 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.92 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.92 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.92 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.92 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.91 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.91 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.91 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.9 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.9 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.9 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.89 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.88 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.88 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.88 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.88 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.88 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.86 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.86 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.85 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.85 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.84 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.84 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.83 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.83 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.83 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.82 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.81 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.81 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.8 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.78 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.77 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.77 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.74 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.72 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.7 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.7 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.69 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.69 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.68 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.67 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.67 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.66 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.66 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.66 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.63 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.62 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.62 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.58 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.58 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.58 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.58 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.57 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.56 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.55 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.54 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.53 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.53 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.5 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.47 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.45 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.45 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.42 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.41 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.41 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.41 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.39 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.37 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.37 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.35 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.33 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.33 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.31 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.29 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.21 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.2 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.13 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.13 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.11 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.07 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.02 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.01 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.0 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.96 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.96 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.95 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.88 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.86 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.84 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.84 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.83 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.82 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.77 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.76 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.74 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.73 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.72 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.68 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.61 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.61 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.59 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.55 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.51 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.5 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.48 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.48 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.45 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.44 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.44 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.43 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.43 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.37 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.35 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.34 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.33 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.32 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.32 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.32 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.32 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.29 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.26 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.26 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.24 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.23 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.2 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.18 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.16 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.12 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 98.12 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 98.11 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.1 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.05 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.04 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.03 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.0 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.98 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.97 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.95 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.88 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.88 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.82 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.81 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.8 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.8 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.8 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.78 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.78 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.77 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.74 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.72 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.72 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.67 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.67 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.64 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.63 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.63 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.63 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.62 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.62 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.6 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.59 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.53 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.52 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.5 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.47 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.45 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.44 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.42 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.4 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.39 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.39 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.39 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.37 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.36 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.34 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.33 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.32 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.28 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 97.26 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.25 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.2 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.19 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.18 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.16 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.16 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.16 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.15 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.14 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.12 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.12 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 97.11 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.11 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.1 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.09 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.07 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.07 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.04 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.04 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.03 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.02 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.0 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.0 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.98 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.98 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.97 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.95 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.93 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.92 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.91 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.91 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.9 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.89 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.86 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.85 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.84 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.8 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.79 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.79 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.79 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.78 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.76 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.75 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.74 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.73 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.73 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.73 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.72 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.72 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.72 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.72 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.71 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.7 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.69 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.69 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.69 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.68 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.68 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.67 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.67 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.67 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.65 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.65 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.64 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.64 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.64 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.64 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.64 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.63 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.62 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.61 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.6 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.6 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.6 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.59 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.59 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.59 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.57 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.57 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.57 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.57 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.56 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.56 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.54 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.53 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.52 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.51 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.51 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.51 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.51 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.5 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.5 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.49 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.49 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.48 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.47 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.47 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.45 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.44 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.43 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.43 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.42 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.42 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.42 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.41 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.41 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.41 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.41 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.4 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.39 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.37 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.36 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 96.34 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.32 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.32 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.32 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.32 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.32 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.32 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.31 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.31 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.31 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.31 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.3 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 96.29 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.29 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.29 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.29 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.28 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.27 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.27 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.27 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.27 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.26 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.26 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.26 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.26 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 96.25 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.23 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.23 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.23 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.22 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 96.22 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.22 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.21 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.21 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.21 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 96.2 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.2 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.2 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.2 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.2 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.19 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.19 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.17 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.17 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.16 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 96.16 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.16 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 96.15 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.15 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.15 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.14 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 96.14 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.14 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.13 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.13 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.13 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.12 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.11 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.09 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.08 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 96.07 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.06 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 96.05 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.04 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.04 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.03 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.03 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.02 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.01 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 96.01 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.01 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.01 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 96.0 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.99 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.98 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.96 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.95 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.93 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.93 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.92 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.92 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.9 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.9 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.88 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.87 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.86 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.86 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.86 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.85 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.81 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.81 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.78 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.77 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.75 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.74 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.72 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.71 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.71 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.65 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.64 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.63 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.62 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.59 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.48 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.48 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.44 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.43 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.4 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.38 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.33 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 95.24 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.22 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.2 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.18 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.17 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 95.17 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.16 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 95.15 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.13 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.12 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.12 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 95.1 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.08 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.07 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 95.05 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 95.03 |
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-60 Score=421.31 Aligned_cols=213 Identities=33% Similarity=0.568 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 6 ~~l~i~~ls~~y~~~----~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 81 (275)
T 3gfo_A 6 YILKVEELNYNYSDG----THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81 (275)
T ss_dssp EEEEEEEEEEECTTS----CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHH
T ss_pred cEEEEEEEEEEECCC----CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHH
Confidence 489999999999753 2599999999999999999999999999999999999999999999965
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
.+||+||++...++..||.+|+.++....+.+.++..+++.++++.+||.++.++++.+|||||||||+|||||+.+
T Consensus 82 ~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred HhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 38999999753344459999999987666666777778899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|++|||||||+|||+.++..++++|+++.++. |+|||+||||++++ .+||++++|++|+++++|+++++++.
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999986333 68999999999998 57999999999999999999998764
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=431.25 Aligned_cols=216 Identities=32% Similarity=0.450 Sum_probs=194.5
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+|+|+++. +..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 22 ~~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp -CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45899999999997531 124699999999999999999999999999999999999999999999964
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.+||+||++..++.+ ||.+|+.++....+...++.++++.++++.+||.++.++++.+|||||||||+|||||+
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~-TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTS-CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEeCCCccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 489999998654433 99999999876556667777888999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||+|||+.++..++++|+++.++ .|+|||+||||++++ .+||||++|++|++++.|++++++..
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~-~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRR-LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998654 478999999999998 57999999999999999999999865
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=428.99 Aligned_cols=210 Identities=32% Similarity=0.499 Sum_probs=191.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+|+|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 4 ~l~i~~ls~~y~~~-----~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~ 78 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT-----PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78 (359)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGG
T ss_pred EEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchh
Confidence 79999999999763 699999999999999999999999999999999999999999999854
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
.+||+||++..++.+ ||.+|+.|++...+...++.++++.++++.++|.+++++++.+|||||||||+|||||+.+|
T Consensus 79 ~r~ig~vfQ~~~l~p~l-tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 79 ERRLGYLVQEGVLFPHL-TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp GSCCEEECTTCCCCTTS-CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hCCEEEEeCCCcCCCCC-CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 389999998655444 99999999876555566677788999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 178 KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 178 ~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++|||||||+|||+..+.++++.|.++.++ .|+|+|+||||++++ .+||||++|++|++++.|++++++..
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999988887654 478999999999997 58999999999999999999999875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-59 Score=406.40 Aligned_cols=212 Identities=26% Similarity=0.422 Sum_probs=183.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++. ...++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ~l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 589999999997431 113599999999999999999999999999999999999999999999965
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAr 171 (263)
.++|+||++..+..+ ||.+|+.++.... ....++..+++.++++.+++.+. .++++.+|||||||||+|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLL-TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHHEEEECTTCCCCTTS-CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCC-cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 389999998654433 9999998865322 33455666788899999999875 59999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
||+.+|++|||||||+|||+.++..+++.|++++++ .|+|||+||||++.+++||++++|++|++++.++++++.
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 999999999999999999999999999999998653 368999999999977789999999999999999887753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-59 Score=428.42 Aligned_cols=210 Identities=26% Similarity=0.453 Sum_probs=193.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++. .+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++ .+
T Consensus 3 ~l~~~~l~~~yg~~-----~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV-----VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77 (381)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCE
T ss_pred EEEEEeEEEEECCE-----EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCE
Confidence 59999999999763 699999999999999999999999999999999999999999999965 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
||+||++..++.+ ||.+|+.+++...+.+.++.++++.++++.++|.+++++++.+|||||||||+|||||+.+|++||
T Consensus 78 g~VfQ~~~l~p~l-tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 78 GMVFQSYALYPHL-SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp EEECTTCCCCTTS-CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred EEEecCCcCCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998755444 999999998766666777778899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+.++++.|+++.++ .|+|+|+||||++++ .+||||++|++|++++.|++++++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHH-HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999998654 368999999999997 68999999999999999999999864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-58 Score=405.19 Aligned_cols=210 Identities=28% Similarity=0.399 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 23 ~~l~i~~l~~~y~~~-----~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 97 (263)
T 2olj_A 23 QMIDVHQLKKSFGSL-----EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97 (263)
T ss_dssp CSEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHH
T ss_pred heEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHH
Confidence 379999999999753 599999999999999999999999999999999999999999999965
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++..+..+ ||.+|+.++. ...+....+..+++.++++.++|.+..++++.+|||||||||+|||||+.
T Consensus 98 ~~~~i~~v~Q~~~l~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 98 VREEVGMVFQRFNLFPHM-TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp HHHHEEEECSSCCCCTTS-CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred HhCcEEEEeCCCcCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 279999997643333 9999998853 33344455556778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||+|||+.++..+++.|+++.++ |+|||+||||++++. +||++++|++|++++.|+++++++.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998653 689999999999985 7999999999999999999998764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-58 Score=397.38 Aligned_cols=203 Identities=31% Similarity=0.395 Sum_probs=181.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~y~~~-----~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (224)
T 2pcj_A 3 EILRAENIKKVIRGY-----EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77 (224)
T ss_dssp EEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHH
T ss_pred cEEEEEeEEEEECCE-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999853
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++..+.. .|+.+|+.++....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus 78 ~~~~~~i~~v~q~~~l~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 78 LLRNRKLGFVFQFHYLIPE-LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp HHHHHHEEEECSSCCCCTT-SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEecCcccCCC-CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 38999999864433 399999988654334444555677889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecC
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++++.+||++++|++|++++.|+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999998653 689999999999887899999999999999885
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-58 Score=405.17 Aligned_cols=210 Identities=29% Similarity=0.379 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 5 ~~l~i~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 79 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH-----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79 (262)
T ss_dssp CCEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred ceEEEeeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccc
Confidence 379999999999753 599999999999999999999999999999999999999999999864
Q ss_pred --------------ceEEEecCCCCcccccCHHHHHHhhc-cCCCCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChHH
Q 024738 100 --------------PKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQ 163 (263)
Q Consensus 100 --------------~~~~v~q~~~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq 163 (263)
.++|+||++..+..+ ||.+|+.++. ...+....+..+++.++++.+||.+. .++++.+|||||
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l-tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHM-TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158 (262)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTS-CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred ccccChhhHHHHhcceEEEecCcccCCCC-cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHH
Confidence 279999997543333 9999998853 33344445556778899999999998 999999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecC
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~ 242 (263)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++++ .+||++++|++|++++.|+
T Consensus 159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998653 68999999999998 4899999999999999999
Q ss_pred hhhHHhh
Q 024738 243 GVSILNF 249 (263)
Q Consensus 243 ~~~~~~~ 249 (263)
++++++.
T Consensus 237 ~~~~~~~ 243 (262)
T 1b0u_A 237 PEQVFGN 243 (262)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-58 Score=402.27 Aligned_cols=206 Identities=29% Similarity=0.409 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 6 ~~l~i~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (257)
T 1g6h_A 6 EILRTENIVKYFGEF-----KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80 (257)
T ss_dssp EEEEEEEEEEEETTE-----EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred cEEEEeeeEEEECCE-----eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 479999999999753 599999999999999999999999999999999999999999999964
Q ss_pred --ceEEEecCCCCcccccCHHHHHHhhccC--CC-----------CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHH
Q 024738 100 --PKSFVFQNPDHQVVMPTVEADVAFGLGN--LN-----------LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164 (263)
Q Consensus 100 --~~~~v~q~~~~~~~~~tv~~~~~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 164 (263)
.++|+||++..+.. .||.+|+.++... .+ ....+..+++.++++.+|+++..++++.+||||||
T Consensus 81 ~~~i~~v~q~~~l~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 159 (257)
T 1g6h_A 81 HYGIVRTFQTPQPLKE-MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 159 (257)
T ss_dssp HHTEEECCCCCGGGGG-SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred hCCEEEEccCCccCCC-CcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHH
Confidence 38999999854332 3999999886533 12 22344456788999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++++ .+||++++|++|++++.|++
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999998643 68999999999997 58999999999999999999
Q ss_pred hh
Q 024738 244 VS 245 (263)
Q Consensus 244 ~~ 245 (263)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-58 Score=405.47 Aligned_cols=209 Identities=28% Similarity=0.445 Sum_probs=187.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 10 ~~l~~~~l~~~~~~~-----~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQ-----ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp CEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred ceEEEEeEEEEeCCe-----eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHh
Confidence 489999999999763 699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh---
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--- 175 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--- 175 (263)
.++|++|++...+. .||.+|+.++.... ...+.++++.++++.+++.++.++++.+|||||||||+|||||+.
T Consensus 85 ~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~ 161 (266)
T 4g1u_C 85 RTRAVMRQYSELAFP-FSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ 161 (266)
T ss_dssp HHEEEECSCCCCCSC-CBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred heEEEEecCCccCCC-CCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 27999999865443 49999999875433 223345678899999999999999999999999999999999999
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ---ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ---~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||+|||+.++..+++.|++++++ +++|||+||||++++ .+||++++|++|++++.|+++++++.
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 99999999999999999999999999998654 357999999999998 58999999999999999999998754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-58 Score=418.47 Aligned_cols=212 Identities=33% Similarity=0.476 Sum_probs=191.8
Q ss_pred cceEEEEeEEEEE-CCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------
Q 024738 31 GVAIECSNLNYSI-TKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR---------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y-~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~---------- 99 (263)
+.+|+++||+|+| ++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 12 ~~~l~~~~l~~~y~g~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGA-----RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86 (355)
T ss_dssp CEEEEEEEEEECCTTST-----TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG
T ss_pred CceEEEEEEEEEEcCCC-----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhh
Confidence 4589999999999 643 599999999999999999999999999999999999999999999964
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++..++.+ ||.+|+.|++...+...++.++++.++++.++|++++++++.+|||||||||+|||||+.+|+
T Consensus 87 r~ig~v~Q~~~l~~~l-tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 87 RNVGLVFQNYALFQHM-TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp SSEEEECGGGCCCTTS-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEecCcccCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 489999998654444 999999998655455566667889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|||||||++||+..+.++++.|+++.++ .|+|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDE-MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHH-HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998654 368999999999997 58999999999999999999999764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=400.86 Aligned_cols=210 Identities=27% Similarity=0.358 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 14 ~~l~i~~l~~~y~~~-----~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 88 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKK-----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88 (256)
T ss_dssp CCEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred CeEEEEEEEEEECCE-----EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhh
Confidence 379999999999753 599999999999999999999999999999999999999999999965
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
.++|+||++..+.. .|+.+|+.++....+....+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++
T Consensus 89 ~i~~v~q~~~l~~~-ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 89 LISYLPEEAGAYRN-MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp TEEEECTTCCCCTT-SBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEcCCCCCCCC-CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 48999999864433 39999998864333344444556788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||||+|||+.++..+++.|+++.++ |+|||++|||++++. +||++++|++|++++.|+++++.+.
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999998642 689999999999985 7999999999999999999998653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=417.65 Aligned_cols=210 Identities=35% Similarity=0.489 Sum_probs=190.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|+++ ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV-----KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV 77 (359)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred EEEEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcE
Confidence 59999999999753 599999999999999999999999999999999999999999999964 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.|++...+....+.++++.++++.++|+++.++++.+|||||||||+|||||+.+|++||
T Consensus 78 g~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL 156 (359)
T 2yyz_A 78 GMVFQNYALYPHM-TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL 156 (359)
T ss_dssp EEECSSCCCCTTS-CHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEecCcccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998654444 999999998755444444556778899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+++.|+++.++ .|.|+|+||||++++ ..||++++|++|+++..|+++++++.
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 157 FDEPLSNLDANLRMIMRAEIKHLQQE-LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHH-HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998654 368999999999997 58999999999999999999999865
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-57 Score=394.82 Aligned_cols=210 Identities=24% Similarity=0.342 Sum_probs=184.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 4 ~~~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAI-----HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp SEEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred CceEEEEeEEEEECCe-----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 3589999999999753 599999999999999999999999999999999999999999999964
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcC-CCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVG-MSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++|+||++..+... |+.+|+.++... .....+..+++.++++.++ +.+..++++.+|||||||||+|||||+.
T Consensus 79 ~~~~i~~v~q~~~l~~~l-tv~enl~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPEL-TVYENLMMGAYN-RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp HHTTEEEECSSCCCCTTS-BHHHHHHGGGTT-CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred HhCCEEEEecCCccCCCC-cHHHHHHHhhhc-CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 289999998543333 999999886421 1223344567788999995 9888999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||+|||+.++..+++.|+++.+ .|+|||++|||++++ .+||++++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999864 368999999999887 68999999999999999999988753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-57 Score=417.26 Aligned_cols=210 Identities=33% Similarity=0.444 Sum_probs=190.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGNF-----TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV 77 (362)
T ss_dssp CEEEEEEEEESSSS-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred EEEEEeEEEEECCE-----EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcE
Confidence 59999999999753 599999999999999999999999999999999999999999999964 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.+++...+...++.++++.++++.++|+++.++++.+|||||||||+|||||+.+|++||
T Consensus 78 g~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 156 (362)
T 2it1_A 78 GLVFQNWALYPHM-TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL 156 (362)
T ss_dssp EEECTTCCCCTTS-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEecCcccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998654444 999999998654455566667789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+++.|+++.++ .|+|+|+||||++++ .+||++++|++|++++.|+++++++.
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 157 LDEPLSNLDALLRLEVRAELKRLQKE-LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EESGGGGSCHHHHHHHHHHHHHHHHH-HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EECccccCCHHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998653 368999999999997 68999999999999999999999864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=416.01 Aligned_cols=210 Identities=29% Similarity=0.412 Sum_probs=190.6
Q ss_pred eEEEEeEEEEECCCcccccc--ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVP--ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~--iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
+|+++||+|+|++ .+ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 3 ~l~i~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~ 77 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77 (353)
T ss_dssp CEEEEEEEEEEGG-----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS
T ss_pred EEEEEeEEEEECC-----EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccC
Confidence 6999999999975 26 99999999999999999999999999999999999999999999854
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++|+||++..++.+ ||.+|+.++....+...++.++++.++++.++|+++.++++.+|||||||||+|||||+
T Consensus 78 ~~~~r~ig~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~ 156 (353)
T 1oxx_K 78 PPEDRKIGMVFQTWALYPNL-TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156 (353)
T ss_dssp CGGGSCEEEEETTSCCCTTS-CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred ChhhCCEEEEeCCCccCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 379999998654444 99999999876555556666778999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+|++|||||||++||+..+.++++.|+++.++ .|+|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 157 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSR-LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH-HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998653 368999999999997 58999999999999999999999764
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-57 Score=416.75 Aligned_cols=210 Identities=31% Similarity=0.455 Sum_probs=186.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 11 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGNF-----TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 85 (372)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred eEEEEEEEEEECCE-----EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcE
Confidence 59999999999753 599999999999999999999999999999999999999999999965 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.|++...+...++.++++.++++.++|.+++++++.+|||||||||+|||||+.+|++||
T Consensus 86 g~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 164 (372)
T 1v43_A 86 SMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 164 (372)
T ss_dssp EEEEC------CC-CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEecCcccCCCC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998654444 999999998655555666667789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+++.|+++.++ .|.|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 165 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 165 MDEPLSNLDAKLRVAMRAEIKKLQQK-LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998654 368999999999997 68999999999999999999999865
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-57 Score=416.19 Aligned_cols=210 Identities=29% Similarity=0.461 Sum_probs=190.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+|+|++. ++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~ 77 (372)
T 1g29_1 3 GVRLVDVWKVFGEV-----TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77 (372)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred EEEEEeEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC
Confidence 69999999999753 599999999999999999999999999999999999999999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.+||+||++..++.+ ||.+|+.|++...+....+.++++.++++.++|+++.++++.+|||||||||+|||||+.
T Consensus 78 ~~~r~ig~v~Q~~~l~~~l-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 156 (372)
T 1g29_1 78 PKDRDIAMVFQSYALYPHM-TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (372)
T ss_dssp GGGSSEEEECSCCCCCTTS-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred HhHCCEEEEeCCCccCCCC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 379999998654444 999999998655555566667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
+|++|||||||++||+..+..+++.|+++.++ .|.|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 157 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ-LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEECCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998654 368999999999997 58999999999999999999999865
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-56 Score=391.80 Aligned_cols=209 Identities=29% Similarity=0.445 Sum_probs=185.4
Q ss_pred ceEEEEeEEEEEC-CCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 32 VAIECSNLNYSIT-KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 32 ~~l~~~nl~~~y~-~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
++|+++||+++|+ ++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.+.++|+||++..
T Consensus 3 ~~l~i~~l~~~y~~~~-----~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~ 77 (253)
T 2nq2_C 3 KALSVENLGFYYQAEN-----FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSS 77 (253)
T ss_dssp EEEEEEEEEEEETTTT-----EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCC
T ss_pred ceEEEeeEEEEeCCCC-----eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCcc
Confidence 3799999999997 43 59999999999999999999999999999999999999999999988889999999865
Q ss_pred cccccCHHHHHHhhccCC-C---CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 024738 111 QVVMPTVEADVAFGLGNL-N---LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPt 186 (263)
++.. |+.+|+.++.... + ....+..+++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 78 PFAY-SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp SSCC-BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred CCCC-CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4333 9999998864211 1 122344567889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 187 s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|||+.++..+++.|+++.++ .|+|||++|||++++ .+||++++|++|+ ++.|+++++.+
T Consensus 157 s~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLAQS-QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999998653 368999999999998 5899999999999 99999988764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=395.90 Aligned_cols=214 Identities=29% Similarity=0.433 Sum_probs=184.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKS 102 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~ 102 (263)
+|+++||+++|+.......++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 6999999999972100002599999999999999999999999999999999999999999999975 389
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC--cccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS--NYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
|+||++...++..|+.+|+.++.... ....+..+++.++++.+||. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99998632233349999998864332 22223345678899999999 9999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||+|||+.++..+++.|+++.++ |.|||+||||++++. +||++++|++|++++.|+++++++.
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999998653 689999999999985 7999999999999999999888753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-57 Score=392.29 Aligned_cols=205 Identities=29% Similarity=0.414 Sum_probs=181.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
||+++||+++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.+++ .+
T Consensus 1 ml~~~~l~~~y~~-------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i 72 (240)
T 2onk_A 1 MFLKVRAEKRLGN-------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI 72 (240)
T ss_dssp CCEEEEEEEEETT-------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCC
T ss_pred CEEEEEEEEEeCC-------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcE
Confidence 4789999999963 59999999999 99999999999999999999999999999999965 37
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..+..+ |+.+|+.++....+ ....++++.++++.+|+.+..++++.+|||||||||+|||||+.+|++||
T Consensus 73 ~~v~q~~~l~~~l-tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 149 (240)
T 2onk_A 73 GFVPQDYALFPHL-SVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp BCCCSSCCCCTTS-CHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred EEEcCCCccCCCC-cHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998643333 99999998653322 12225678899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||+|||+.++..+++.|++++++ .|+|||++|||++++ .+||++++|++|++++.|+++++++.
T Consensus 150 LDEPts~LD~~~~~~~~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 150 LDEPLSAVDLKTKGVLMEELRFVQRE-FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHH-HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999998643 267999999999987 58999999999999999999998764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=410.47 Aligned_cols=206 Identities=31% Similarity=0.453 Sum_probs=185.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
||+++||+|+|++ . +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++ .+
T Consensus 1 ml~~~~l~~~y~~-----~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i 74 (348)
T 3d31_A 1 MIEIESLSRKWKN-----F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (348)
T ss_dssp CEEEEEEEEECSS-----C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred CEEEEEEEEEECC-----E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcE
Confidence 5899999999964 3 89999999999999999999999999999999999999999999975 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
+|+||++..++.+ ||.+|+.++....+.... +++.++++.++|++++++++.+|||||||||+|||||+.+|++||
T Consensus 75 g~v~Q~~~l~~~l-tv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 75 AFVYQNYSLFPHM-NVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp EEECTTCCCCTTS-CHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEecCcccCCCC-CHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998654444 999999987543222222 678899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|||||++||+..+..+++.|+++.++ .|+|+|+||||++++ .+||++++|++|+++..|+++++++.
T Consensus 151 LDEP~s~LD~~~~~~l~~~l~~l~~~-~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 151 LDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp EESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EECccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999998654 368999999999997 68999999999999999999999864
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-56 Score=396.54 Aligned_cols=212 Identities=30% Similarity=0.368 Sum_probs=183.7
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------- 99 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------- 99 (263)
.++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 19 ~~~l~~~~l~~~y~~~-----~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK-----TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp CEEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred CceEEEEeEEEEECCE-----EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 3589999999999753 599999999999999999999999999999999999999999999864
Q ss_pred ----ceEEEecCCCCccc-ccCHHHHHHhhccC----CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVV-MPTVEADVAFGLGN----LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~-~~tv~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
.++|+||++...+. ..|+.+|+.++... .+...++..+++.++++.+||.+..++++.+|||||||||+||
T Consensus 94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA 173 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIA 173 (279)
T ss_dssp HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 37999998643222 12999999886321 1112234456788999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE--EEEccCcchh-hcCCEEEEEeCCEEEEecChhhHH
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA--LWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti--iivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
|||+.+|++|||||||+|||+.++..++++|+++.++ |+|| |+||||++++ .+||++++|++|++++.|++++++
T Consensus 174 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~--g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 174 RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS--YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC--CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999998653 5799 9999999997 589999999999999999998876
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 252 ~~ 253 (279)
T 2ihy_A 252 TS 253 (279)
T ss_dssp SH
T ss_pred cc
Confidence 53
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-55 Score=386.64 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 15 ~~l~~~~l~~~y~~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP--NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92 (271)
T ss_dssp CCEEEEEEEECCTTCT--TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ceEEEEEEEEEeCCCC--CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHh
Confidence 3799999999997510 13699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHH-----HHHHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV-----RSKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAr 171 (263)
.++|+||++..+ . .|+.+|+.++..... ...+. ...+.++++.+ |+....++++.+|||||||||+|||
T Consensus 93 ~~i~~v~Q~~~l~-~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 93 TQVAAVGQEPLLF-G-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHEEEECSSCCCC-S-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred ccEEEEecCCccc-c-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHH
Confidence 389999998643 3 399999998643221 11221 12345677887 7888889999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+.+|++|||||||+|||+.++..+++.|+++.++ .|+|||+||||++.+..||++++|++|++++.|+++++++.
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW-ASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT-TTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999997543 36899999999999877999999999999999999998754
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-55 Score=392.77 Aligned_cols=206 Identities=31% Similarity=0.440 Sum_probs=174.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 53 ~i~~~~vs~~y~~~----~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 53 RIEFENVHFSYADG----RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128 (306)
T ss_dssp CEEEEEEEEESSTT----CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred eEEEEEEEEEcCCC----CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhc
Confidence 69999999999643 3699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++||||++.. +..|+++|+.++.... ..++..+.+ .+.++.+ |++....+++.+|||||||||+||||
T Consensus 129 ~i~~v~Q~~~l--f~~Tv~eNi~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 129 HIGVVPQDTVL--FNDTIADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp TEEEECSSCCC--CSEEHHHHHHTTSTTC--CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred ceEEEecCCcc--CcccHHHHHHhhcccC--CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 48999999853 3449999999874322 222222111 1122222 45556677788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+.+|++|||||||++||+.++..+++.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 205 L~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCA---NRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT---TSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC---CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999853 4799999999999877999999999999999999999875
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=382.53 Aligned_cols=211 Identities=27% Similarity=0.339 Sum_probs=179.2
Q ss_pred CcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcC--------
Q 024738 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKR-------- 99 (263)
Q Consensus 30 ~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~-------- 99 (263)
..++|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++
T Consensus 17 ~~~~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp ---CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CCceEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 34589999999999753 599999999999999999999999999999999999 468999999965
Q ss_pred ------ceEEEecCCCCcccccCHHHHHHhhcc-------CCCCChHHHHHHHHHHHHHcCCC-cccCCCCC-CCChHHH
Q 024738 100 ------PKSFVFQNPDHQVVMPTVEADVAFGLG-------NLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQ-TLSGGQK 164 (263)
Q Consensus 100 ------~~~~v~q~~~~~~~~~tv~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqk 164 (263)
.++|+||++..+..+ |+.+|+.+... ......++..+++.++++.+|+. ...++++. +||||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~-tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGV-SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTC-BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHhhCCEEEEccCccccccc-cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 278999998654333 89998876431 11123344456788999999996 57888887 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecC
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~ 242 (263)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++|||++++. . ||++++|++|++++.|+
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999998743 3689999999999985 4 89999999999999999
Q ss_pred hhhHHh
Q 024738 243 GVSILN 248 (263)
Q Consensus 243 ~~~~~~ 248 (263)
++++..
T Consensus 249 ~~~~~~ 254 (267)
T 2zu0_C 249 FTLVKQ 254 (267)
T ss_dssp TTHHHH
T ss_pred HHHHhh
Confidence 988753
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=379.70 Aligned_cols=204 Identities=31% Similarity=0.391 Sum_probs=173.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcC-----------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKR----------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~----------- 99 (263)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+++
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~ 77 (250)
T 2d2e_A 3 QLEIRDLWASIDGE-----TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77 (250)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHH
T ss_pred eEEEEeEEEEECCE-----EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHH
Confidence 69999999999753 599999999999999999999999999999999999 789999999965
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhcc---CCCCChHHHHHHHHHHHHHcCC-CcccCCCCCC-CChHHHHHHHHHH
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLG---NLNLTHDEVRSKVAKALDAVGM-SNYLQRPVQT-LSGGQKQRVAIAG 171 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~-LSgGqkqRv~lAr 171 (263)
.++|+||++..+.. .|+.+|+.++.. .......+..+++.++++.+|+ .+..++++.+ |||||||||+|||
T Consensus 78 ~~~~i~~v~q~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 78 ARKGLFLAFQYPVEVPG-VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp HHTTBCCCCCCCC-CCS-CBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred HhCcEEEeccCCccccC-CCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 26799999865433 399999987532 1112233445678889999999 4788999999 9999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-c-CCEEEEEeCCEEEEecChh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-Y-ADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~-~d~v~~l~~G~i~~~g~~~ 244 (263)
||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||+||||++++. . ||++++|++|++++.|+++
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999853 3689999999999985 5 5999999999999999987
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-54 Score=376.66 Aligned_cols=202 Identities=28% Similarity=0.431 Sum_probs=173.3
Q ss_pred eEEEEeEEEEEC-CCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 33 AIECSNLNYSIT-KKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 33 ~l~~~nl~~~y~-~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.++++||+|+|+ ++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 7 ~~~~~~l~~~y~~~~----~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 7 DITFRNIRFRYKPDS----PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp EEEEEEEEEESSTTS----CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred ceeEEEEEEEeCCCC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 699999999993 22 2599999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ . .|+.+|+.++.. ... .+++.++++.+++.++ +++++.+|||||||||
T Consensus 83 ~~i~~v~Q~~~l~-~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv 154 (247)
T 2ff7_A 83 RQVGVVLQDNVLL-N-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 154 (247)
T ss_dssp HHEEEECSSCCCT-T-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH
T ss_pred hcEEEEeCCCccc-c-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH
Confidence 389999998643 3 399999988632 122 2334456666666543 4456789999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+.+|++|||||||+|||+.++..+++.|+++. + |+|||+||||++.+..||++++|++|++++.|++++++
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K--GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T--TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C--CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999983 2 68999999999988779999999999999999999987
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 232 ~~ 233 (247)
T 2ff7_A 232 SE 233 (247)
T ss_dssp TS
T ss_pred hC
Confidence 54
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-54 Score=373.09 Aligned_cols=203 Identities=25% Similarity=0.390 Sum_probs=170.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.+|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.++|+||++..+
T Consensus 5 ~~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEG---GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTT---SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCccc
Confidence 479999999999631 13699999999999999999999999999999999999999999999999999999998643
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
. .|+.+|+.++.. .... +..++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus 82 -~-~tv~enl~~~~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 82 -P-GTIKENIIFGVS---YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp -S-BCHHHHHHTTSC---CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred -C-CCHHHHhhccCC---cChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2 399999988632 1111 1223344444432 234456899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAV-KNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l-~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||+|||+.++..+++.+ .++. .++|||++|||++++..||++++|++|++++.|+++++.+.
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhh---CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999864 4542 25799999999998877999999999999999999988764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-54 Score=374.96 Aligned_cols=208 Identities=27% Similarity=0.355 Sum_probs=171.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
+|+++||+++|++. ..++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.++|+||++..
T Consensus 3 ~l~~~~l~~~y~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~-- 77 (237)
T 2cbz_A 3 SITVRNATFTWARS---DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWI-- 77 (237)
T ss_dssp CEEEEEEEEESCTT---SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCC--
T ss_pred eEEEEEEEEEeCCC---CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcC--
Confidence 59999999999731 1369999999999999999999999999999999999999999999999999999999852
Q ss_pred cccCHHHHHHhhccCCCCChHHHHHHHHH---HHHHcCCC-----cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 113 VMPTVEADVAFGLGNLNLTHDEVRSKVAK---ALDAVGMS-----NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 113 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~l~-----~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+..|+.+|+.++... ..+.. +++.+ +++.+++. ..+++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~tv~enl~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 78 QNDSLRENILFGCQL---EEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp CSEEHHHHHHTTSCC---CTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CCcCHHHHhhCcccc---CHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334999999886422 11111 12212 23334432 23578899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||+|||+.++..+++.|.+.....+|+|||++|||++.+..||++++|++|++++.|+++++++.
T Consensus 154 Pts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 154 PLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp TTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999999999999998521110136899999999998878999999999999999999998764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-54 Score=375.05 Aligned_cols=199 Identities=24% Similarity=0.356 Sum_probs=177.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
++|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.+++
T Consensus 3 ~~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~ 72 (249)
T 2qi9_C 3 IVMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLA 72 (249)
T ss_dssp EEEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHH
T ss_pred cEEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHh
Confidence 37999999986 2899999999999999999999999999999999999999 9999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.++|+||++..+.. .|+.+|+.++... ... .+++.++++.+|+.++.++++.+||||||||++|||||+.+|+
T Consensus 73 ~~i~~v~q~~~~~~~-~tv~e~l~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 73 LHRAYLSQQQTPPFA-TPVWHYLTLHQHD-KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp HHEEEECSCCCCCTT-CBHHHHHHTTCSS-TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred ceEEEECCCCccCCC-CcHHHHHHHhhcc-CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 38999999864332 3999999886321 111 4567889999999999999999999999999999999999999
Q ss_pred -------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHh
Q 024738 179 -------VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 179 -------llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
+|||||||+|||+.++..+++.|+++.++ |+|||++|||++++ .+||++++|++|++++.|+++++.+
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999998643 68999999999998 6899999999999999999988865
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=375.49 Aligned_cols=203 Identities=28% Similarity=0.469 Sum_probs=175.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ml~~~~l~~~y~~~----~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T 1mv5_A 1 MLSARHVDFAYDDS----EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (243)
T ss_dssp CEEEEEEEECSSSS----SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred CEEEEEEEEEeCCC----CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh
Confidence 48999999999422 2699999999999999999999999999999999999999999999964
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccC-----------CCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQ-----------RPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~ 168 (263)
.++|+||++..+ . .|+.+|+.++... ... .+++.++++.+++.++.+ +++.+|||||||||+
T Consensus 77 ~i~~v~q~~~l~-~-~tv~enl~~~~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 77 QIGFVSQDSAIM-A-GTIRENLTYGLEG-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp TCCEECCSSCCC-C-EEHHHHTTSCTTS-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred hEEEEcCCCccc-c-ccHHHHHhhhccC-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 379999998643 2 4999999876321 122 234667788888876554 456799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+.+|++|||||||+|||+.++..+++.|+++. + |+|||++|||++.+..||++++|++|++++.|+++++++
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K--GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T--TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999985 3 689999999999887799999999999999999998876
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 227 ~ 227 (243)
T 1mv5_A 227 T 227 (243)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=376.47 Aligned_cols=202 Identities=26% Similarity=0.336 Sum_probs=177.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKS 102 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~ 102 (263)
||+++||+++|++.. ...++|+|+||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+++ .++
T Consensus 1 ml~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp CEEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEE
T ss_pred CEEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheE
Confidence 589999999997510 00259999999999 9999999999999999999999999 9999999976 589
Q ss_pred -EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 103 -FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 103 -~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
|+||++.. ..|+.+|+.++...... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 78 ~~v~Q~~~l---~~tv~enl~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 150 (263)
T 2pjz_A 78 TNLPEAYEI---GVTVNDIVYLYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIV 150 (263)
T ss_dssp ECCGGGSCT---TSBHHHHHHHHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EEeCCCCcc---CCcHHHHHHHhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999864 34999999886432211 135677899999999 9999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCC-EEEEEeCCEEEEecChhhHHhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYAD-GAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d-~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
||||||++||+.++..+++.|+++. . |||++|||++++ ++|| ++++|++|++++.|+++++.+.
T Consensus 151 lLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 151 GLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred EEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9999999999999999999999862 2 999999999997 5899 9999999999999999998753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-52 Score=368.10 Aligned_cols=204 Identities=29% Similarity=0.439 Sum_probs=173.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+++|+++. ..++|+|+||+|++|++++|+||||||||||+|+|+|+++| +|+|.+++
T Consensus 16 ~~l~i~~l~~~y~~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT--NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTCC--SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCCC--cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHh
Confidence 3799999999997531 13599999999999999999999999999999999999987 89999965
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv 167 (263)
.++|+||++..+ . .|+.+|+.++.. ... .+++.++++.+++.+. .++++.+|||||||||
T Consensus 93 ~~i~~v~Q~~~l~-~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 93 SIIGIVPQDTILF-N-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp TTEEEECSSCCCC-S-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred ccEEEEcCCCccc-c-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 389999998643 2 499999988532 122 2334556666665432 3567899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+.+|++|||||||+|||+.++..+++.|+++. + ++|||+||||++.+..||++++|++|++++.|++++++
T Consensus 165 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~--~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K--NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T--TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C--CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999984 2 57999999999988779999999999999999999987
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 242 ~~ 243 (260)
T 2ghi_A 242 KL 243 (260)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-53 Score=363.93 Aligned_cols=193 Identities=21% Similarity=0.330 Sum_probs=165.9
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEE
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSF 103 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~ 103 (263)
.+|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ .++|
T Consensus 9 ~~l~~~~ls~~y~~------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~ 82 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82 (214)
T ss_dssp CEEEEEEEEEESSS------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred ceEEEEEEEEEeCC------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE
Confidence 48999999999964 399999999999999999999999999999999999999999999976 4899
Q ss_pred EecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
+||++..+.. .|+.+|+.++....+. ..+ .+++.++++.+|+++. ++++.+||||||||++|||||+.+|++||||
T Consensus 83 v~q~~~~~~~-~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 83 LPEEIIVPRK-ISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp ECSSCCCCTT-SBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred EeCCCcCCCC-CCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999864332 3999999886432221 112 4567889999999988 9999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEE
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKI 237 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i 237 (263)
|||+|||+.++..+++.|+++.++ |+|||++|||++++. +||+++++ +|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999999998643 579999999999985 68887744 4554
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-52 Score=383.90 Aligned_cols=202 Identities=25% Similarity=0.324 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
..|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.+++
T Consensus 18 ~~i~~~~l~~~y~~~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGG---NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp CCEEEEEEEEESSSSS---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CeEEEEEEEEEecCCC---eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 3699999999995321 369999999999999999999999999999999999998 999999965
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCC-----------CChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT-----------LSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqRv 167 (263)
.++|+||++..+. .|+++|+.+.. ... ++++.++++.++|.++.++++.+ |||||||||
T Consensus 94 r~ig~v~Q~~~lf~--~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRv 164 (390)
T 3gd7_A 94 KAFGVIPQKVFIFS--GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLM 164 (390)
T ss_dssp HTEEEESCCCCCCS--EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHH
T ss_pred CCEEEEcCCcccCc--cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHH
Confidence 4899999986432 49999987432 111 34567899999999999999988 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+.+|++|||||||++||+..+..+++.|+++. .++|+|++|||++.+..||||++|++|++++.|++++++
T Consensus 165 alARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998763 358999999999877789999999999999999999998
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
..
T Consensus 242 ~~ 243 (390)
T 3gd7_A 242 HY 243 (390)
T ss_dssp HC
T ss_pred hC
Confidence 75
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=393.20 Aligned_cols=203 Identities=28% Similarity=0.400 Sum_probs=174.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 339 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE---APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CEEEEEEEECSCSSS---CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCCCC---CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 699999999997532 3699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~ 168 (263)
+++|++|++.. +..|++||+.++... ... +++.++++..++. ...++++.+||||||||++
T Consensus 416 ~i~~v~Q~~~l--~~~tv~eni~~~~~~--~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~ 487 (578)
T 4a82_A 416 QIGLVQQDNIL--FSDTVKENILLGRPT--ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 487 (578)
T ss_dssp TEEEECSSCCC--CSSBHHHHHGGGCSS--CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred heEEEeCCCcc--CcccHHHHHhcCCCC--CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHH
Confidence 48999999853 334999999987432 222 2334455555443 3344556799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.++..+.+.++++.+ ++|+|+||||++.++.||++++|++|++++.|+++++++
T Consensus 488 lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 488 IARIFLNNPPILILDEATSALDLESESIIQEALDVLSK---DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998742 579999999999998899999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 565 ~ 565 (578)
T 4a82_A 565 K 565 (578)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-51 Score=395.44 Aligned_cols=207 Identities=28% Similarity=0.433 Sum_probs=176.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 341 ~i~~~~v~~~y~~~~---~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 341 SVSFENVEFRYFENT---DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CEEEEEEEECSSSSS---CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred cEEEEEEEEEcCCCC---CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence 699999999996432 3699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++|++|++.. +..|++||+.++... ...++..+.+ .+.++.+ |++...++++.+||||||||++||||
T Consensus 418 ~i~~v~Q~~~l--f~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa 493 (587)
T 3qf4_A 418 HISAVPQETVL--FSGTIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493 (587)
T ss_dssp HEEEECSSCCC--CSEEHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH
T ss_pred heEEECCCCcC--cCccHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH
Confidence 48999999864 344999999886432 2233322221 1222222 55666788899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 494 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 494 LVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999873 36899999999999989999999999999999999999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=364.14 Aligned_cols=197 Identities=26% Similarity=0.408 Sum_probs=154.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.+|+++||++.+ .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++++++|+||++..+
T Consensus 39 ~~l~~~~l~~~~-------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG-------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111 (290)
T ss_dssp -----------C-------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCC
T ss_pred ceEEEEEEEEcC-------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccC
Confidence 479999999863 1599999999999999999999999999999999999999999999999999999998643
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
. .|+.+|+. +.. .... ...++++.+++.+. +++++.+||||||||++|||||+.+|++|
T Consensus 112 -~-~tv~enl~-~~~---~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 181 (290)
T 2bbs_A 112 -P-GTIKENII-GVS---YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181 (290)
T ss_dssp -S-SBHHHHHH-TTC---CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred -c-ccHHHHhh-Ccc---cchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence 2 39999997 431 1111 22334444555332 33456899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 181 LLDELTTFLDESDQFGVIEAV-KNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l-~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||||+|||+.++..+++.+ .++. .|+|||++|||++.+..||++++|++|++++.|++++++.
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999864 4442 2689999999999887899999999999999999998865
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-50 Score=389.03 Aligned_cols=205 Identities=28% Similarity=0.448 Sum_probs=176.0
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 340 ~~i~~~~v~~~y~~~~---~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKE---KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred CeEEEEEEEEEcCCCC---ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 3799999999997421 3699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNY-----------LQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv 167 (263)
+++|+||++..+ ..|+++|+.++.. ...+ ++++.++++.+++.+. .++++.+||||||||+
T Consensus 417 ~~i~~v~Q~~~l~--~~tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 417 RHFALVSQNVHLF--NDTIANNIAYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred cCeEEEcCCCccc--cccHHHHHhccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 489999998643 3499999998641 1222 2345566666666544 3445689999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.++.||++++|++|++++.|++++++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQK---NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999742 68999999999998889999999999999999999997
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 567 ~~ 568 (582)
T 3b5x_A 567 AQ 568 (582)
T ss_pred hC
Confidence 64
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-50 Score=389.29 Aligned_cols=205 Identities=29% Similarity=0.435 Sum_probs=176.1
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
.+|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 340 ~~i~~~~v~~~y~~~~---~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 340 GDLEFRNVTFTYPGRE---VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CCEEEEEEEECSSSSS---CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CcEEEEEEEEEcCCCC---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 3699999999997421 2699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCCCChHHHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-----------YLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv 167 (263)
+++|+||++..+ ..|+++|+.++.. ...+. +++.++++.+++.+ ..++++.+||||||||+
T Consensus 417 ~~i~~v~Q~~~l~--~~tv~eni~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 417 NQVALVSQNVHLF--NDTVANNIAYART-EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp HTEEEECSSCCCC--SSBHHHHHHTTTT-SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred hhCeEEccCCcCC--CCCHHHHHhccCC-CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 489999998643 3499999998641 12222 34555666665543 44556789999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHH
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSIL 247 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
+|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|++||+++.++.||++++|++|++++.|++++++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999852 57999999999998889999999999999999999997
Q ss_pred hh
Q 024738 248 NF 249 (263)
Q Consensus 248 ~~ 249 (263)
+.
T Consensus 567 ~~ 568 (582)
T 3b60_A 567 AQ 568 (582)
T ss_dssp HH
T ss_pred Hc
Confidence 64
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-50 Score=392.37 Aligned_cols=202 Identities=28% Similarity=0.446 Sum_probs=174.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 354 ~i~~~~v~~~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK----KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CEEEEEEECCSSSS----SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEECCCC----CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence 69999999999753 3699999999999999999999999999999999999999999999976
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCC-----------CCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV-----------QTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGqkqRv~ 168 (263)
+++|++|++.. +..|+++|+.++... .+.+ ++.++++.+++.+..++.+ .+||||||||++
T Consensus 430 ~i~~v~Q~~~l--f~~tv~eni~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 430 SIGIVLQDTIL--FSTTVKENLKYGNPG--ATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501 (598)
T ss_dssp HEEEECTTCCC--CSSBHHHHHHSSSTT--CCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH
T ss_pred ceEEEeCCCcc--ccccHHHHHhcCCCC--CCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 48999999853 334999999986322 2222 2345556666655444443 799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.++.||+|++|++|++++.|+++++++
T Consensus 502 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME---GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT---TSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999842 689999999999998899999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 579 ~ 579 (598)
T 3qf4_B 579 K 579 (598)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=406.84 Aligned_cols=206 Identities=30% Similarity=0.463 Sum_probs=177.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|
T Consensus 1076 ~I~f~nVsf~Y~~~~--~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP--EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTTSC--SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCCCC--CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 599999999997532 24699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGM-----------SNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~ 168 (263)
++++|||+|. .+..|+++|+.++......+.++ +.++++..++ +.........||||||||++
T Consensus 1154 ~i~~V~Qdp~--LF~gTIreNI~~gld~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQria 1227 (1321)
T 4f4c_A 1154 QIAIVSQEPT--LFDCSIAENIIYGLDPSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIA 1227 (1321)
T ss_dssp TEEEECSSCC--CCSEEHHHHHSSSSCTTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHH
T ss_pred heEEECCCCE--eeCccHHHHHhccCCCCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHH
Confidence 5899999985 34569999999875433344433 4455555544 33344456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+++.+.+.+.|++.. +++|+|+|+|+++.+..||+|+||++|+|++.|+++++++
T Consensus 1228 iARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~---~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1228 IARALVRNPKILLLDEATSALDTESEKVVQEALDRAR---EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS---SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc---CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998763 3689999999999999999999999999999999999997
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 1305 ~ 1305 (1321)
T 4f4c_A 1305 E 1305 (1321)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=392.96 Aligned_cols=204 Identities=31% Similarity=0.464 Sum_probs=177.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++.. +.++|+|+||+|++|+.+||+||||||||||+++|.|+++|++|+|.++|
T Consensus 415 ~I~~~nvsF~Y~~~~--~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP--DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSST--TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCCC--CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 599999999997532 24799999999999999999999999999999999999999999999986
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-----------GMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
+++||+|+|. .+..|+++|+.++.. ..+.++ +.++++.. |++.........||||||||++
T Consensus 493 ~i~~v~Q~~~--Lf~~TI~eNI~~g~~--~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRia 564 (1321)
T 4f4c_A 493 NVAVVSQEPA--LFNCTIEENISLGKE--GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIA 564 (1321)
T ss_dssp HEEEECSSCC--CCSEEHHHHHHTTCT--TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHH
T ss_pred cccccCCcce--eeCCchhHHHhhhcc--cchHHH----HHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHH
Confidence 5999999985 345699999999743 233333 33444443 3444455667899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
||||++++|++||||||||+||+.++..+.+.|.++.+ |+|+|+|||++..++.||+|++|++|+|++.|+++++++
T Consensus 565 iARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~---~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 565 IARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK---GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT---TSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC---CCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999999999999999998753 579999999999999999999999999999999999986
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 642 ~ 642 (1321)
T 4f4c_A 642 Q 642 (1321)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-47 Score=368.96 Aligned_cols=207 Identities=27% Similarity=0.326 Sum_probs=179.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
..+++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+...++|+||++..
T Consensus 355 ~~~l~~~~l~~~~~~------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428 (607)
T ss_dssp CEEEEECCEEEECSS------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCC
T ss_pred ceEEEEeceEEEecc------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccC
Confidence 458999999999975 36899999999999999999999999999999999999999999988889999999754
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD 190 (263)
.+ ..||.+++...... .....+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 429 ~~-~~tv~e~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD 503 (607)
T 3bk7_A 429 EY-EGTVYELLSKIDSS----KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503 (607)
T ss_dssp CC-SSBHHHHHHHHHHH----HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred CC-CCcHHHHHHhhhcc----CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCC
Confidence 33 33898877653110 00113457788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeC--CEEEEecChhhHHhh
Q 024738 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMED--GKIVMQADGVSILNF 249 (263)
Q Consensus 191 ~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~--G~i~~~g~~~~~~~~ 249 (263)
+.++..+++.|++++++ .|.|||+||||++++. +|||+++|++ |++...|+++++++.
T Consensus 504 ~~~~~~l~~~l~~l~~~-~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 504 VEQRLAVSRAIRHLMEK-NEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999999999998643 3679999999999984 7999999986 888889999888763
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=365.55 Aligned_cols=207 Identities=27% Similarity=0.325 Sum_probs=178.9
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH 110 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~ 110 (263)
.++++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+...++|++|++..
T Consensus 285 ~~~l~~~~l~~~~~~------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~ 358 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358 (538)
T ss_dssp CEEEEECCEEEEETT------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCC
T ss_pred CeEEEEeeEEEEECC------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcC
Confidence 458999999999975 36899999999999999999999999999999999999999999988889999999764
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLD 190 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD 190 (263)
.+ ..||.+++...... ... ..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 359 ~~-~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD 433 (538)
T 1yqt_A 359 DY-EGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433 (538)
T ss_dssp CC-SSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred CC-CCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 33 33898876543110 001 12456788999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC--CEEEEecChhhHHhh
Q 024738 191 ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED--GKIVMQADGVSILNF 249 (263)
Q Consensus 191 ~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~--G~i~~~g~~~~~~~~ 249 (263)
+.++..+++.|++++++ .|.|||+||||++++ .+|||+++|++ |+++..|+++++++.
T Consensus 434 ~~~~~~i~~~l~~l~~~-~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 434 VEQRLAVSRAIRHLMEK-NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999999999998643 257999999999998 58999999986 788899999888753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=387.68 Aligned_cols=206 Identities=29% Similarity=0.448 Sum_probs=174.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 1030 ~i~~~~v~~~y~~~~--~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP--SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCGG--GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred cEEEEEEEEECCCCC--CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 699999999997531 23699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~ 168 (263)
+++||||++.. +..|+++|+.++......+.++.. ++++..++. ........+||||||||++
T Consensus 1108 ~i~~v~Q~~~l--~~~ti~eNi~~~~~~~~~~~~~i~----~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1108 QLGIVSQEPIL--FDCSIAENIAYGDNSRVVSYEEIV----RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp SCEEEESSCCC--CSSBHHHHHTCCCSSCCCCHHHHH----HHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH
T ss_pred ceEEECCCCcc--ccccHHHHHhccCCCCCCCHHHHH----HHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH
Confidence 48999999853 345999999886533333333333 333443433 2334456799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++|||||||++||+.+++.+.+.|++.. +|+|+|+||||++.+..||||++|++|++++.|+++++++
T Consensus 1182 iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998852 3689999999999998899999999999999999999987
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 1259 ~ 1259 (1284)
T 3g5u_A 1259 Q 1259 (1284)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=385.80 Aligned_cols=208 Identities=31% Similarity=0.442 Sum_probs=175.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 387 ~i~~~~v~~~y~~~~--~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK--EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CEEEEEEEECCSSTT--SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCCCC--CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 599999999997531 24699999999999999999999999999999999999999999999986
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH-----HHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA-----KALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++||+|+|.. +..|+++|+.++... ...++..+.+. +.++.+ |++.....++.+||||||||++||||
T Consensus 465 ~i~~v~Q~~~l--~~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARa 540 (1284)
T 3g5u_A 465 IIGVVSQEPVL--FATTIAENIRYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540 (1284)
T ss_dssp HEEEECSSCCC--CSSCHHHHHHHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHH
T ss_pred heEEEcCCCcc--CCccHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHH
Confidence 38999999853 345999999987532 33333333222 223333 34445567788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+.+|++||||||||+||+.+...+.+.++++. +|+|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 541 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAR---EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH---TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998864 26899999999999988999999999999999999998764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-46 Score=356.70 Aligned_cols=206 Identities=21% Similarity=0.293 Sum_probs=175.2
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-ceEEEecCCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-PKSFVFQNPD 109 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-~~~~v~q~~~ 109 (263)
.+.++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+ .++|++|+..
T Consensus 267 ~~~l~~~~l~~~~~~------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~ 340 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF 340 (538)
T ss_dssp CEEEEECCEEEEETT------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCC
T ss_pred cceEEEcceEEEECC------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcc
Confidence 458999999999975 368888999999999999999999999999999999999999998865 5899999865
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
..+ ..|+.+|+.+..... ... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 341 ~~~-~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gL 416 (538)
T 3ozx_A 341 PNY-DGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYL 416 (538)
T ss_dssp CCC-SSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred ccc-CCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 432 349999987642221 111 1234678899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeC--CEEEEecChhhHH
Q 024738 190 DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMED--GKIVMQADGVSIL 247 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~--G~i~~~g~~~~~~ 247 (263)
|+.++..++++|++++++ .|.|||+||||++++. +||||++|++ |.....+++.++.
T Consensus 417 D~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 417 DVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999998754 3689999999999985 7999999986 5666667665543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-45 Score=352.96 Aligned_cols=203 Identities=26% Similarity=0.322 Sum_probs=172.6
Q ss_pred EeEEEEECCCccccccceeceeeEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSG-----QLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~G-----e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.+++++|++. ..+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+......++|++|+....
T Consensus 350 ~~~~~~y~~~----~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~ 425 (608)
T 3j16_B 350 ASRAFSYPSL----KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPK 425 (608)
T ss_dssp SSSCCEECCE----EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCC
T ss_pred cceeEEecCc----ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEeccccccc
Confidence 6778888653 24799999999999 88999999999999999999999999999864444689999986543
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
+ ..|+.+++....... ... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 426 ~-~~tv~e~~~~~~~~~-~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 426 F-PGTVRQLFFKKIRGQ-FLN---PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp C-CSBHHHHHHHHCSST-TTS---HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred C-CccHHHHHHHHhhcc-ccc---HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 3 338998875433211 111 23456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeC--CEEEEecChhhHHhh
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMED--GKIVMQADGVSILNF 249 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~--G~i~~~g~~~~~~~~ 249 (263)
.++..++++|+++.++ .|.|||+||||++++ .+|||+++|++ |+++..|+|+++++.
T Consensus 501 ~~~~~i~~ll~~l~~~-~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 501 EQRIICSKVIRRFILH-NKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHHHH-HTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999998643 368999999999998 57999999996 899999999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=355.54 Aligned_cols=204 Identities=23% Similarity=0.406 Sum_probs=163.1
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCC
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNP 108 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~ 108 (263)
.++|+++|++|+|++.. .++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++++ +++|++|++
T Consensus 669 ~~mL~v~nLs~~Y~g~~---~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~ 745 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS---KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHA 745 (986)
T ss_dssp SEEEEEEEEEECCTTCS---SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHH
T ss_pred CceEEEEeeEEEeCCCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccch
Confidence 45899999999996421 3689999999999999999999999999999999999999999999975 589999975
Q ss_pred CCc---ccccCHHHHHHhhccC----------------------------------------------------------
Q 024738 109 DHQ---VVMPTVEADVAFGLGN---------------------------------------------------------- 127 (263)
Q Consensus 109 ~~~---~~~~tv~~~~~~~~~~---------------------------------------------------------- 127 (263)
... ....|+.+++.+.+..
T Consensus 746 ~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~E 825 (986)
T 2iw3_A 746 FAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGE 825 (986)
T ss_dssp HHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhh
Confidence 210 0112555554321100
Q ss_pred ---------CCCC----------------------------------hHHHHHHHHHHHHHcCCCc-c-cCCCCCCCChH
Q 024738 128 ---------LNLT----------------------------------HDEVRSKVAKALDAVGMSN-Y-LQRPVQTLSGG 162 (263)
Q Consensus 128 ---------~~~~----------------------------------~~~~~~~~~~~l~~~~l~~-~-~~~~~~~LSgG 162 (263)
..+. .....+++.++++.+||.. . .++++.+||||
T Consensus 826 Ni~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGG 905 (986)
T 2iw3_A 826 NIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGG 905 (986)
T ss_dssp STTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHH
T ss_pred hhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHH
Confidence 0000 0001345778999999985 4 58899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEec
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g 241 (263)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++ .+||++++|++|+++..|
T Consensus 906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-----g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G 980 (986)
T 2iw3_A 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980 (986)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-----SSEEEEECSCHHHHTTTCCEEECCBTTBCCC--
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999888764 35999999999998 589999999999998776
Q ss_pred C
Q 024738 242 D 242 (263)
Q Consensus 242 ~ 242 (263)
+
T Consensus 981 ~ 981 (986)
T 2iw3_A 981 H 981 (986)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=339.20 Aligned_cols=186 Identities=27% Similarity=0.285 Sum_probs=153.4
Q ss_pred EEE-EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE---------EEcC----
Q 024738 34 IEC-SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV---------YVKR---- 99 (263)
Q Consensus 34 l~~-~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I---------~~~~---- 99 (263)
.++ +||+|+|++. ..+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .+.+
T Consensus 21 ~~~~~~ls~~yg~~----~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~ 95 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN----AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95 (538)
T ss_dssp ---CCCEEEECSTT----CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHH
T ss_pred hhHhcCcEEEECCc----cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHH
Confidence 565 6999999753 14899999 999999999999999999999999999999999995 2221
Q ss_pred -----------ceEEEecCCCCccc--ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH
Q 024738 100 -----------PKSFVFQNPDHQVV--MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 100 -----------~~~~v~q~~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 166 (263)
.+++++|....... ..++.+++.... ..+++.++++.+|++...++++.+||||||||
T Consensus 96 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQR 166 (538)
T 1yqt_A 96 NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---------ETGKLEEVVKALELENVLEREIQHLSGGELQR 166 (538)
T ss_dssp HHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHH
Confidence 25788876432111 127777764311 11346789999999998999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCC
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G 235 (263)
|+|||||+.+|++|||||||++||+.++.++++.|+++.+ .|.|||+||||++++ .+||+|++|++|
T Consensus 167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~--~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE--EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999865 368999999999998 479999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=342.00 Aligned_cols=187 Identities=27% Similarity=0.299 Sum_probs=157.2
Q ss_pred eEEE--------EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE---------
Q 024738 33 AIEC--------SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV--------- 95 (263)
Q Consensus 33 ~l~~--------~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I--------- 95 (263)
+|++ +||+++|++. ..+|+++| +|++||+++|+||||||||||||+|+|+++|++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~----~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~ 157 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN----AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR 157 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT----CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHH
T ss_pred eEEEecCCccccCCeEEEECCC----CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhh
Confidence 4788 8999999753 14899999 999999999999999999999999999999999995
Q ss_pred EEcC---------------ceEEEecCCCCcc--cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCC
Q 024738 96 YVKR---------------PKSFVFQNPDHQV--VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158 (263)
Q Consensus 96 ~~~~---------------~~~~v~q~~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 158 (263)
.+.+ .+++++|...... +..++.+++.... . .+++.++++.+||++.+++++.+
T Consensus 158 ~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~-----~~~~~~~L~~lgL~~~~~~~~~~ 228 (607)
T 3bk7_A 158 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----E-----VGKFEEVVKELELENVLDRELHQ 228 (607)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----C-----SSCHHHHHHHTTCTTGGGSBGGG
T ss_pred eeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----H-----HHHHHHHHHHcCCCchhCCChhh
Confidence 2221 2567787643211 1238888875310 0 13466789999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCC
Q 024738 159 LSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDG 235 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G 235 (263)
|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++.++ |.|||+||||++++ .+||+|++|+++
T Consensus 229 LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~--g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE--GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999998653 68999999999998 479999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=341.42 Aligned_cols=204 Identities=25% Similarity=0.314 Sum_probs=142.6
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHH---------------------HHHhCCCCCCceEE-------EEcC----
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLL---------------------KVLAGLLKPTNGHV-------YVKR---- 99 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLl---------------------k~i~Gl~~p~~G~I-------~~~~---- 99 (263)
.+|+||||+|++||++||+||||||||||+ +++.|+.+|+.|.| .+++
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 589999999999999999999999999998 99999999985544 4432
Q ss_pred -----ceEEEecCCCCc------------------ccccCHHHHHHhhccCC--CCChHHHH------HHHHHHHHHcCC
Q 024738 100 -----PKSFVFQNPDHQ------------------VVMPTVEADVAFGLGNL--NLTHDEVR------SKVAKALDAVGM 148 (263)
Q Consensus 100 -----~~~~v~q~~~~~------------------~~~~tv~~~~~~~~~~~--~~~~~~~~------~~~~~~l~~~~l 148 (263)
.+++++|.+... +...|+.+|+.+..... ........ ....++++.+||
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 234555543211 01127788876632110 00000000 111245888999
Q ss_pred Ccc-cCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc
Q 024738 149 SNY-LQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225 (263)
Q Consensus 149 ~~~-~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~ 225 (263)
.+. +++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+.+++++|+++.++ |.|||+||||++.+..
T Consensus 192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--TCEEEEECCCHHHHHH
T ss_pred chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHhh
Confidence 864 789999999999999999999999998 99999999999999999999999998643 6899999999998878
Q ss_pred CCEEEEE------eCCEEEEecChhhHHhhhhhhhhhh
Q 024738 226 ADGAFYM------EDGKIVMQADGVSILNFIKSRQSSY 257 (263)
Q Consensus 226 ~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~ 257 (263)
||++++| ++|++++.|+++++.+........|
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 307 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQY 307 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHH
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHH
Confidence 9999999 8999999999999876533333333
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=340.91 Aligned_cols=195 Identities=22% Similarity=0.329 Sum_probs=161.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC-CCC--CCceEEEEcCceEEEecCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG-LLK--PTNGHVYVKRPKSFVFQNPD 109 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G-l~~--p~~G~I~~~~~~~~v~q~~~ 109 (263)
.|...|++++|+++ .+|+|+||+|++|++++|+||||||||||+|+|+| .+. +..+. .+++|++|++.
T Consensus 435 ~L~~~~ls~~yg~~-----~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~----~~~~~v~q~~~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK-----ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEE----CRTVYVEHDID 505 (986)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTT----SCEEETTCCCC
T ss_pred eeEEeeEEEEECCE-----EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccc----eeEEEEccccc
Confidence 57777999999763 59999999999999999999999999999999994 221 11111 13578888652
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~ 188 (263)
......|+.+|+.+ ...+. .+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++
T Consensus 506 ~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~ 578 (986)
T 2iw3_A 506 GTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH 578 (986)
T ss_dssp CCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTT
T ss_pred ccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 22223389999875 12221 45678899999995 678999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEE-EecChhhHHh
Q 024738 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIV-MQADGVSILN 248 (263)
Q Consensus 189 LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~-~~g~~~~~~~ 248 (263)
||+.++..+.+.|++ . |.|||+||||++++ .+||++++|++|+++ +.|+++++..
T Consensus 579 LD~~~~~~l~~~L~~---~--g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 579 LDTVNVAWLVNYLNT---C--GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CCHHHHHHHHHHHHH---S--CSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHHh---C--CCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999987 2 57999999999998 579999999999997 6899988765
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=322.11 Aligned_cols=135 Identities=28% Similarity=0.393 Sum_probs=110.6
Q ss_pred CHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCC---EEEEeCCCCCCCH
Q 024738 116 TVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACK---VLLLDELTTFLDE 191 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~---llllDEPts~LD~ 191 (263)
|+.+|+.+... . . ..++..+.++.+++.. ..++++.+|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 506 tv~e~l~~~~~---~--~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~ 579 (670)
T 3ux8_A 506 TVEDALDFFAS---I--P-KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHV 579 (670)
T ss_dssp BHHHHHHHTTT---C--H-HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCH
T ss_pred CHHHHHHHHHH---h--h-hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCH
Confidence 67777765421 1 1 1234567888899974 5789999999999999999999999874 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhh
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYI 258 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 258 (263)
.++..++++|+++.++ |.|||+||||++.+..||+|++| ++|+++++|+++++.+........|+
T Consensus 580 ~~~~~i~~~l~~l~~~--g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~~~~ 650 (670)
T 3ux8_A 580 DDIARLLDVLHRLVDN--GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 650 (670)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccHHHHHH
Confidence 9999999999998653 68999999999988889999999 89999999999998764333333343
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=318.42 Aligned_cols=186 Identities=25% Similarity=0.334 Sum_probs=144.1
Q ss_pred eEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE-----------EcCc------
Q 024738 38 NLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY-----------VKRP------ 100 (263)
Q Consensus 38 nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~-----------~~~~------ 100 (263)
|++++|+.+. ..|++++ ++++||++||+||||||||||||+|+|+++|++|+|. +.+.
T Consensus 82 ~~~~~Y~~~~----~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 82 HVTHRYSANS----FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TEEEECSTTS----CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CeEEEECCCc----eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhh
Confidence 5688887542 4677777 6899999999999999999999999999999999983 1110
Q ss_pred -------e--EEEecCCCCcc-----cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH
Q 024738 101 -------K--SFVFQNPDHQV-----VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 101 -------~--~~v~q~~~~~~-----~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 166 (263)
+ .+.+|...... ...++.+++.... . ...+++.++++.+||...+++++.+||||||||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qr 229 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---E----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQR 229 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---C----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHH
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---h----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHH
Confidence 1 11122111000 0002233222110 0 113567889999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEE
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i 237 (263)
|+|||||+.+|++|||||||++||+..+..+.+.|+++.++ |.|||+||||++++ ..||++++|++|..
T Consensus 230 v~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP--TKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT--TCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999998643 67999999999998 47999999987653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=310.95 Aligned_cols=182 Identities=23% Similarity=0.314 Sum_probs=142.6
Q ss_pred EeEEEEECCCccccccceeceeeEEe-CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-----------EEcC-----
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVP-SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV-----------YVKR----- 99 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~-~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I-----------~~~~----- 99 (263)
++.+.+|+.+ -++-..|.+. +||++||+||||||||||+|+|+|+++|++|+| .+.+
T Consensus 3 ~~~~~~~~~~------~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 3 GEVIHRYKVN------GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp CCEEEESSTT------SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CCCceecCCC------ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHH
Confidence 3577889864 3444455555 899999999999999999999999999999998 2322
Q ss_pred ----------ceEEEecCCCCc--ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH
Q 024738 100 ----------PKSFVFQNPDHQ--VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV 167 (263)
Q Consensus 100 ----------~~~~v~q~~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 167 (263)
.+....|..... .+..++.+++.... ..+++.++++.+++....++++.+|||||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 77 YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID---------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147 (538)
T ss_dssp HHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred HHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch---------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 122333322111 11225665443210 012456789999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCE
Q 024738 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGK 236 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~ 236 (263)
+|||||+.+|++|||||||++||+..+..+.+.|+++.+ |+|||+||||++++ ..||+|++|++|.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK---NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT---TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC---CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999842 68999999999998 4799999998653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=303.73 Aligned_cols=121 Identities=27% Similarity=0.387 Sum_probs=106.7
Q ss_pred HHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 137 SKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 137 ~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
.++.++++.+||.. .+++++.+|||||||||+|||||+++| ++|||||||+|||+..++.+++.|+++.++ |.|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~--G~T 860 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR--GNT 860 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCE
Confidence 45678899999975 568999999999999999999999876 799999999999999999999999998653 689
Q ss_pred EEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhhh
Q 024738 213 ALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYIE 259 (263)
Q Consensus 213 iiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
||+||||++.++.||+|++| ++|+|++.|+++++++........|+.
T Consensus 861 VIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l~ 913 (916)
T 3pih_A 861 VIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913 (916)
T ss_dssp EEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHHT
T ss_pred EEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHHH
Confidence 99999999998889999999 899999999999998764444445554
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=305.38 Aligned_cols=122 Identities=25% Similarity=0.370 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 137 SKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEA---CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 137 ~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~---p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
+++.++++.+||.. .+++++.+|||||||||+||++|+.+ |++|||||||+|||+..+..++++|++++++ |.|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~t 785 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA--GNT 785 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCE
Confidence 45778999999986 47899999999999999999999996 7999999999999999999999999998653 689
Q ss_pred EEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhhhh
Q 024738 213 ALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYIER 260 (263)
Q Consensus 213 iiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 260 (263)
||+||||+++++.||+|++| ++|++++.|+++++.+........|+..
T Consensus 786 VIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l~~ 839 (842)
T 2vf7_A 786 VIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLRA 839 (842)
T ss_dssp EEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHHHH
T ss_pred EEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHHHH
Confidence 99999999999889999999 7999999999999987644445556543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=304.04 Aligned_cols=119 Identities=29% Similarity=0.417 Sum_probs=104.5
Q ss_pred HHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEE
Q 024738 138 KVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEAC---KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTA 213 (263)
Q Consensus 138 ~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ti 213 (263)
+..++++.+||.. .+++++.+|||||||||+||++|+.+| ++|||||||+|||+..+..+++.|+++.++ |.||
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~TV 901 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--GDTV 901 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEE
Confidence 4567899999987 789999999999999999999999875 999999999999999999999999998653 6899
Q ss_pred EEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhhhhhhhhhhh
Q 024738 214 LWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNFIKSRQSSYI 258 (263)
Q Consensus 214 iivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~~~~~~~~ 258 (263)
|+||||+++++.||+|++| ++|++++.|+++++.+........|+
T Consensus 902 IvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~l 952 (972)
T 2r6f_A 902 LVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 952 (972)
T ss_dssp EEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTCHHHHHH
T ss_pred EEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchhHHHHHH
Confidence 9999999998889999999 79999999999998764333333343
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=311.78 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=156.6
Q ss_pred cceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-E-EEEcC----ceEEE
Q 024738 31 GVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-H-VYVKR----PKSFV 104 (263)
Q Consensus 31 ~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~-I~~~~----~~~~v 104 (263)
.++++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |++++ .++|+
T Consensus 116 ~~mi~~~nl~~~y~-----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~v 184 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTV 184 (460)
T ss_dssp CTHHHHHHHHHHHH-----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSC
T ss_pred cchhhhhhhhehhh-----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeee
Confidence 35788888887762 79999999999999999999999999999999999999 9 99865 58899
Q ss_pred ecCCCCcccc--cCHHHHHHhhccC-CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH--HhhCCCE
Q 024738 105 FQNPDHQVVM--PTVEADVAFGLGN-LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA--LAEACKV 179 (263)
Q Consensus 105 ~q~~~~~~~~--~tv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra--l~~~p~l 179 (263)
||+....... .++.+|+ ++... .+.. ..+++.++++.+|+++..+ +.+|||||||||+|||| |+.+|++
T Consensus 185 pq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i 258 (460)
T 2npi_A 185 PGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQV 258 (460)
T ss_dssp SSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCccc
Confidence 9987432211 2778777 65331 1111 1123456788889987765 88999999999999999 9999999
Q ss_pred ----EEEeC-CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc------hh-hcCCE-----EEEEe-CCEEEEec
Q 024738 180 ----LLLDE-LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE------EL-EYADG-----AFYME-DGKIVMQA 241 (263)
Q Consensus 180 ----lllDE-Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~------~~-~~~d~-----v~~l~-~G~i~~~g 241 (263)
||||| ||++||+. +..+.++++++ +.|+|+|||+.+ ++ .+||+ |++|+ +|+++ .+
T Consensus 259 ~~sGLlLDEpPts~LD~~-~~~l~~l~~~~-----~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g 331 (460)
T 2npi_A 259 RRSGCIVDTPSISQLDEN-LAELHHIIEKL-----NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AV 331 (460)
T ss_dssp HHSCEEEECCCGGGSCSS-CHHHHHHHHHT-----TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CC
T ss_pred CcceEEEeCCcccccChh-HHHHHHHHHHh-----CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-EC
Confidence 99999 99999999 66666665543 468999999988 65 57999 99999 99999 99
Q ss_pred ChhhHHh
Q 024738 242 DGVSILN 248 (263)
Q Consensus 242 ~~~~~~~ 248 (263)
+++++..
T Consensus 332 ~~~~~~~ 338 (460)
T 2npi_A 332 DDVYKRS 338 (460)
T ss_dssp CHHHHHH
T ss_pred CHHHHhh
Confidence 9887744
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=264.71 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE----
Q 024738 159 LSGGQKQRVAIAGALAEAC--KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM---- 232 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l---- 232 (263)
||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|+++. + |.|||+|||+++.+..||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~--~~~vi~itH~~~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D--TRQVLVVTHLAQIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T--TSEEEEECSCHHHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C--CCEEEEEeCcHHHHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999985 2 57999999999888889999999
Q ss_pred eCCEEEEec
Q 024738 233 EDGKIVMQA 241 (263)
Q Consensus 233 ~~G~i~~~g 241 (263)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 999987654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=251.90 Aligned_cols=85 Identities=25% Similarity=0.349 Sum_probs=78.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 153 QRPVQTLSGGQKQRVAIAGALA------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 153 ~~~~~~LSgGqkqRv~lAral~------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
++++.+|||||||||+|||||+ .+|++|||||||+|||+..+..+++.|+++.+ .|.|||+||||++.+..|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~--~g~tvi~itH~~~~~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER--LNKVIVFITHDREFSEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG--SSSEEEEEESCHHHHTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCCEEEEEecchHHHHhC
Confidence 5688899999999999999999 79999999999999999999999999999864 368999999999987789
Q ss_pred CEEEEEeCCEEEE
Q 024738 227 DGAFYMEDGKIVM 239 (263)
Q Consensus 227 d~v~~l~~G~i~~ 239 (263)
|++++|++|++++
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999875
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-33 Score=231.11 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=108.2
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--ceEEEecCCCCcccccCHHHHHHhhccCCCCChH
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHD 133 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~ 133 (263)
|+||++++||+++|+||||||||||+|++.+- ...+.. ..++++|++........+.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~----------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISSDFCRGLMSDDENDQTVTGAAFDVLH----------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEHHHHHHHHCSSTTCGGGHHHHHHHHH-----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEccHHHHHHhcCcccchhhHHHHHHHHH-----------
Confidence 68999999999999999999999999986542 222221 23567776543222112222211
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------------HHHHH
Q 024738 134 EVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES----------------DQFGV 197 (263)
Q Consensus 134 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~----------------~~~~l 197 (263)
... ......+.....+. ....|+|||||++||||++.+|++|+|||||++||+. .+..+
T Consensus 64 ---~~~-~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l 138 (171)
T 4gp7_A 64 ---YIV-SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM 138 (171)
T ss_dssp ---HHH-HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH
T ss_pred ---HHH-HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh
Confidence 111 22233466554443 3456999999999999999999999999999999999 55888
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchhhcCCEE
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEELEYADGA 229 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v 229 (263)
.+.|+++.++ |.|+|++|||++++..++++
T Consensus 139 ~~~l~~l~~~--g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 139 KKSIKGLQRE--GFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHSTTHHHH--TCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhHHhc--CCcEEEEeCCHHHhhhhhhc
Confidence 8888887543 68999999999998765543
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-35 Score=249.40 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=98.7
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE----------cCceEEEecCCCCcc--cccCHH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV----------KRPKSFVFQNPDHQV--VMPTVE 118 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~----------~~~~~~v~q~~~~~~--~~~tv~ 118 (263)
..+|+|+ ++|++++|+||||||||||+|+|+|+ +|++|+|.. ...++|+||++.... +..++.
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~ 87 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLH 87 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHH
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHH
Confidence 3589996 89999999999999999999999999 999999854 124788888651111 100111
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 024738 119 ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVI 198 (263)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~ 198 (263)
+.+ .. ... .+++.++++. ++ |||||++|||||+.+|++|||||||++ ++..++
T Consensus 88 ~~~----~~-~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~ 140 (208)
T 3b85_A 88 DAL----RD-MVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMK 140 (208)
T ss_dssp HHH----TT-TSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHH
T ss_pred HHH----HH-hcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHH
Confidence 111 00 011 1234556655 43 999999999999999999999999999 888899
Q ss_pred HHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 199 EAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 199 ~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
+.|+++ + .|+||| +|||+++++. ....++|.
T Consensus 141 ~~l~~l-~--~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 141 MFLTRL-G--FGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHTTB-C--TTCEEE-EEEC---------------CC
T ss_pred HHHHHh-c--CCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 999887 3 367999 9999987653 23345664
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=227.57 Aligned_cols=92 Identities=23% Similarity=0.239 Sum_probs=76.4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 151 YLQRPVQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 151 ~~~~~~~~LSgGqkqRv~lAral~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
..++++.+||+|||||++||+||+ .+|++|||||||++||+..+..+.+.|+++. + +.+||++||+.+.+..|
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~--~~~vi~~tH~~~~~~~~ 288 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K--HTQFIVITHNKIVMEAA 288 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T--TSEEEEECCCTTGGGGC
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C--CCeEEEEECCHHHHhhC
Confidence 356678899999999999999997 5889999999999999999999999999873 2 57999999998767889
Q ss_pred CEE--EEEeCCEE-EEecChhh
Q 024738 227 DGA--FYMEDGKI-VMQADGVS 245 (263)
Q Consensus 227 d~v--~~l~~G~i-~~~g~~~~ 245 (263)
|++ ++|.+|.. +...+.++
T Consensus 289 d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 289 DLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp SEEEEEEESSSCEEEEECCC--
T ss_pred ceEEEEEEeCCEEEEEEEEcch
Confidence 987 88888754 33444443
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-34 Score=256.39 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=130.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV 112 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~ 112 (263)
+|+++||+|+|+ . ++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++. +
T Consensus 101 ~i~~~~vs~~y~-~-----~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-----~~~v~q~~~--l 164 (305)
T 2v9p_A 101 FFNYQNIELITF-I-----NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-----LSFANHKSH--F 164 (305)
T ss_dssp HHHHTTCCHHHH-H-----HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----ECGGGTTSG--G
T ss_pred eEEEEEEEEEcC-h-----hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----EEEecCccc--c
Confidence 589999999996 2 5999999999999999999999999999999999998 8999 356788764 2
Q ss_pred cccCHHH-HHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 113 VMPTVEA-DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 113 ~~~tv~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
+..|+.+ |+.++.. .. . .+.+.++.+ +...++ +..|||||||| ||||+.+|+||| |++||+
T Consensus 165 f~~ti~~~ni~~~~~---~~-~----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 165 WLASLADTRAALVDD---AT-H----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp GGGGGTTCSCEEEEE---EC-H----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred ccccHHHHhhccCcc---cc-H----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 3347776 7766421 11 1 344555554 544444 78999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
.++..+.. +||++..++.||+| +|++|++++.|+++++
T Consensus 227 ~~~~~i~~----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 227 QAEDRYLY----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp TTCGGGGG----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred HHHHHHHH----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 98876641 18999888899999 9999999999999887
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-32 Score=252.80 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=135.5
Q ss_pred cceeceeeEEeCCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----eEEEecC
Q 024738 52 PILRDCSFSVPSGQ--------------------LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----KSFVFQN 107 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge--------------------~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----~~~v~q~ 107 (263)
.+|+++||++++|+ ++||+||||||||||+|+|+|+++|++|+|.+++. .++++|+
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 58999999999999 99999999999999999999999999999988652 3789997
Q ss_pred CCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChH--HHHHHHHHHHHhh----------
Q 024738 108 PDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGG--QKQRVAIAGALAE---------- 175 (263)
Q Consensus 108 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--qkqRv~lAral~~---------- 175 (263)
+. +.. .++.++..++.. +.++.++++.+++.+.. ..+. ||+| |+||++||+||+.
T Consensus 117 ~~-~~~-ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~t 183 (413)
T 1tq4_A 117 PN-IPN-VVFWDLPGIGST---------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRT 183 (413)
T ss_dssp SS-CTT-EEEEECCCGGGS---------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cc-cCC-eeehHhhcccch---------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEe
Confidence 53 222 266665444321 12456788999987653 3333 9999 9999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC---CCcEEEEEccCcch--hh-cCCEEE-EEeCC
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLG----DS---GEVTALWVTHRLEE--LE-YADGAF-YMEDG 235 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~----~~---~~~tiiivtH~~~~--~~-~~d~v~-~l~~G 235 (263)
+|++++|||||+|||+..+.++++.++++.. +. ...+|+++||+++. ++ .||++. .|..|
T Consensus 184 kpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred cCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999852 11 23578899999886 64 688774 34443
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-32 Score=230.18 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=115.3
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---------cCceEEEecCCCCcccccCHHHHH
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---------KRPKSFVFQNPDHQVVMPTVEADV 121 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---------~~~~~~v~q~~~~~~~~~tv~~~~ 121 (263)
.++++| .+|++|++++|+||||||||||+|+|+|+++...+.+.+ ...++|+||++..+.. .++.+++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~~~~~l 85 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQ-LIDQGEL 85 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHH-HHHTTCE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHH-HHhcCCc
Confidence 468888 799999999999999999999999999998532222111 1347899998643221 1444443
Q ss_pred Hhhc------cCCCCChHHHHHHHHHH------HHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 122 AFGL------GNLNLTHDEVRSKVAKA------LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
.... ..++....+.++++.+. ++.+|+....++++.+|| ||+.+|++++|||||+++
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l 154 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGR 154 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence 2111 11223344455555555 566677667778888888 999999999999999998
Q ss_pred ----CHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEe
Q 024738 190 ----DESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYME 233 (263)
Q Consensus 190 ----D~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~ 233 (263)
|+..+..+.+.++++.++ .|.|+|+||||++++ ..||++++|.
T Consensus 155 ~~~~d~~~~~~l~~~l~~l~~~-~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 155 GTETADVIQRRLDTARIELAAQ-GDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGG-GGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhhh-ccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 788999999999998643 368999999999998 5799999984
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-28 Score=204.05 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=100.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-ceEEE-------EcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVY-------VKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~-------~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
+++|+||||||||||+|+|+|++... .|... ....++|++|++. +.+++ +. .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~-------~~~~~-~~--~~~~~------ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE-------GKKKI-FS--SKFFT------ 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT-------CCEEE-EE--ETTCC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc-------HHHHH-HH--hhcCC------
Confidence 68999999999999999999997522 33221 1235788888651 11111 11 00110
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCC
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA-----LAEACKVLLLDE--LTTFLDESDQFGVIEAVKNLLGDSGE 210 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra-----l~~~p~llllDE--Pts~LD~~~~~~l~~~l~~l~~~~~~ 210 (263)
-....++++.+||||||||++||+| ++.+|++||||| ||++||+..++.+.+.+.+ .+
T Consensus 66 ----------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-----~~ 130 (178)
T 1ye8_A 66 ----------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-----PN 130 (178)
T ss_dssp ----------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-----TT
T ss_pred ----------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-----CC
Confidence 0145778899999999999999996 999999999999 9999999999988888764 24
Q ss_pred cEEEEEcc---Ccchhh-cCCEEEEEeCCEEEE
Q 024738 211 VTALWVTH---RLEELE-YADGAFYMEDGKIVM 239 (263)
Q Consensus 211 ~tiiivtH---~~~~~~-~~d~v~~l~~G~i~~ 239 (263)
.|+|++|| |.+++. +|++ .+|++++
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 67888885 777774 6887 4566554
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-29 Score=234.97 Aligned_cols=187 Identities=16% Similarity=0.069 Sum_probs=145.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
++++++|+++.|+.+ ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.+.
T Consensus 130 ~~l~~~~v~~~~~tg----~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~ 204 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG----VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIEN 204 (438)
T ss_dssp CTTTSCCCCSBCCCS----CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHT
T ss_pred CceEEeccceecCCC----ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHh
Confidence 468999999999732 3599999 999999999999999999999999999999999999988642
Q ss_pred ----------eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH
Q 024738 101 ----------KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA 170 (263)
Q Consensus 101 ----------~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 170 (263)
++|++|+........++.+|+.+...... . ..-.....++ .+..||+|| ||++||
T Consensus 205 ~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~-----------~--~~~~v~~~ld-~l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 205 ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR-----------D--RGQHVLLIMD-SLTRYAMAQ-REIALA 269 (438)
T ss_dssp TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH-----------T--TTCEEEEEEE-CHHHHHHHH-HHHHHH
T ss_pred hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH-----------h--CCCCHHHHHH-hHHHHHHHH-HHHHHH
Confidence 58999863322212267777665421100 0 0001112222 267899999 999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCCc-----EEEEEccCcchhhcCCEEEEEeCCEEEEecCh
Q 024738 171 GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD--SGEV-----TALWVTHRLEELEYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 171 ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~--~~~~-----tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
+.+|++ |+|||+..+..+.+++.++.+. ..|. ||+++|||++ ..+||++++|.+|+++.++++
T Consensus 270 ---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~ 339 (438)
T 2dpy_A 270 ---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRL 339 (438)
T ss_dssp ---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHH
T ss_pred ---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCH
Confidence 889988 9999999999999999987542 2364 9999999999 668999999999999999988
Q ss_pred hhHHh
Q 024738 244 VSILN 248 (263)
Q Consensus 244 ~~~~~ 248 (263)
.++..
T Consensus 340 ~~~~~ 344 (438)
T 2dpy_A 340 AEAGH 344 (438)
T ss_dssp HHTTC
T ss_pred HHccC
Confidence 77643
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=228.00 Aligned_cols=106 Identities=27% Similarity=0.347 Sum_probs=97.8
Q ss_pred HHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 142 ALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEAC--KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 142 ~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
.+..+||... +++++.+|||||+|||+||++|+.+| .+|||||||++||+...+++++.|+++.+ .|.|||+|||
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~--~G~TVIvVeH 439 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR--GGNSLFVVEH 439 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT--TTCEEEEECC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH--cCCEEEEEcC
Confidence 5788999865 89999999999999999999999999 59999999999999999999999999864 3689999999
Q ss_pred CcchhhcCCEEEEE------eCCEEEEecChhhHHhh
Q 024738 219 RLEELEYADGAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 219 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
|++++..||+|++| ++|++++.|+++++.+.
T Consensus 440 dl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 440 DLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp CHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred CHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 99988889999999 79999999999998764
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-28 Score=220.58 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=126.6
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCC-Cccc
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPD-HQVV 113 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~-~~~~ 113 (263)
++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|++. ..+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~- 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA- 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH-
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH-
Confidence 4678999999999999999999999999999999999999999843 3789999875 332
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCH
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDE 191 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~ 191 (263)
..++.+++.++... +.. ..+++.+|+.+..++++.+|| +||++||||++.+|+ +|+|| ||+|||+
T Consensus 169 ~~~v~e~l~~~~~~-~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~ 235 (302)
T 3b9q_A 169 ATVLSKAVKRGKEE-GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 235 (302)
T ss_dssp HHHHHHHHHHHHHT-TCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGG
T ss_pred HHHHHHHHHHHHHc-CCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCH
Confidence 23888998765321 111 124667788777778888999 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccC---------cchh-hcCCEEEEEeCCEE
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHR---------LEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~---------~~~~-~~~d~v~~l~~G~i 237 (263)
..+. +++.+. .|.|+|++||. ++.+ ...+.|.++..|+.
T Consensus 236 ~~~~------~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 236 LPQA------REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHH------HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 8652 333322 36899999993 3333 25789999999974
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-25 Score=199.41 Aligned_cols=80 Identities=31% Similarity=0.432 Sum_probs=70.9
Q ss_pred cCCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc
Q 024738 152 LQRPVQTLSGGQKQ------RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225 (263)
Q Consensus 152 ~~~~~~~LSgGqkq------Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~ 225 (263)
.++++.+||||||| |+++|+||+.+|++|||||||++||+..+..+.+.|+++..+ +.|||+||||.+....
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--~~~vi~~sH~~~~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--IPQVILVSHDEELKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG--SSEEEEEESCGGGGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHHh
Confidence 45788999999999 667778888899999999999999999999999999998543 5799999999776678
Q ss_pred CCEEEEEe
Q 024738 226 ADGAFYME 233 (263)
Q Consensus 226 ~d~v~~l~ 233 (263)
||++++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999985
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-29 Score=226.96 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=135.7
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFS-----------------------VPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~-----------------------i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..|+++||++.|. +++++++|. +++|+++||+||||||||||+++|+|++
T Consensus 42 ~~i~~~~v~~~y~-------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 42 EQIDLLEVEEVYL-------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeehhhhhh-------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3699999999994 467777764 8999999999999999999999999999
Q ss_pred CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHH
Q 024738 89 KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 89 ~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
+|+.|. ..+++++|++... ..|+.+|+.+.. ..+.......+.+.++++.++ ....+.++.+|||||+||++
T Consensus 115 ~~~~G~----~~v~~v~qd~~~~--~~t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~ 186 (312)
T 3aez_A 115 ARWDHH----PRVDLVTTDGFLY--PNAELQRRNLMH-RKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIP 186 (312)
T ss_dssp HTSTTC----CCEEEEEGGGGBC--CHHHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEE
T ss_pred cccCCC----CeEEEEecCccCC--cccHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhh
Confidence 998775 5689999987432 228888876531 123322222456677888887 55556778899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-h-cCCEEEEEeCCE
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E-YADGAFYMEDGK 236 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~-~~d~v~~l~~G~ 236 (263)
+|+|++.+|++||||||+..+|+.. ..+.++ -+ ..|+++|+.+.. + .++|.+.+.+++
T Consensus 187 ~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~----~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 187 GAEQVVRHPDILILEGLNVLQTGPT-----LMVSDL----FD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEEECSCSEEEEECTTTTCCCSS-----CCGGGG----CS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred hHHHhccCCCEEEECCccccCCcch-----HHHHHh----cC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998521 112222 23 458888888764 3 577776666653
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-27 Score=217.53 Aligned_cols=197 Identities=13% Similarity=0.052 Sum_probs=133.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEE-EecCCCC
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSF-VFQNPDH 110 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~-v~q~~~~ 110 (263)
++++++++++.|+.+ ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.+..+. +.+...
T Consensus 44 ~~i~~~~l~~~~~tg----~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~- 117 (347)
T 2obl_A 44 DPLLRQVIDQPFILG----VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA- 117 (347)
T ss_dssp CSTTCCCCCSEECCS----CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHT-
T ss_pred CCeeecccceecCCC----CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHH-
Confidence 368999999999732 3599999 999999999999999999999999999999999998877542100 000000
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHH------HHHHHHcCCC-cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKV------AKALDAVGMS-NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD 183 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD 183 (263)
. ......++..+.....+.+........ .+.+...+-. -.+-+.+..||+|| ||+++| +.+|++
T Consensus 118 ~-~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~---- 188 (347)
T 2obl_A 118 L-LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV---- 188 (347)
T ss_dssp T-SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC----
T ss_pred h-hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc----
Confidence 0 000000000000011111111100001 1111111111 00114678999999 999999 688887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCc-----EEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLGDSGEV-----TALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~~~~~~-----tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
|+|||+..+..+.+++.++.+.++|. ||+++|||++ ..+||++++|.+|+++.+++++++
T Consensus 189 --t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 --RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 99999999999999999875312467 8999999999 557999999999999999988765
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-26 Score=219.61 Aligned_cols=171 Identities=9% Similarity=0.091 Sum_probs=131.7
Q ss_pred eEEEEeEEEEECCCccccccceece-eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCc
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDC-SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~ 111 (263)
.++++++++.|+. |+.+ +..|++|++++|+||||||||||+++++|+..|. |+ ..+.+.+|++..
T Consensus 257 ~~~~~~l~~g~~~--------ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----~vi~~~~ee~~~- 322 (525)
T 1tf7_A 257 RSSNVRVSSGVVR--------LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----RAILFAYEESRA- 322 (525)
T ss_dssp CCCCCEECCSCHH--------HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----CEEEEESSSCHH-
T ss_pred ccccceeecChHH--------HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----CEEEEEEeCCHH-
Confidence 4566777655532 3332 4599999999999999999999999999998875 53 113466776521
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
.+..+.. ..+++.. + +...|+....+.++.+||+||+||+++|+++..+|++||+| ||++||.
T Consensus 323 ----~l~~~~~----~~g~~~~-------~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~ 385 (525)
T 1tf7_A 323 ----QLLRNAY----SWGMDFE-------E-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALAR 385 (525)
T ss_dssp ----HHHHHHH----TTSCCHH-------H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTS
T ss_pred ----HHHHHHH----HcCCCHH-------H-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHh
Confidence 2333321 1233211 1 33467777788899999999999999999999999999999 9999999
Q ss_pred H-----HHHHHHHHHHHHHhcCCCcEEEEEccCc----------chhh-cCCEEEEEeCCE
Q 024738 192 S-----DQFGVIEAVKNLLGDSGEVTALWVTHRL----------EELE-YADGAFYMEDGK 236 (263)
Q Consensus 192 ~-----~~~~l~~~l~~l~~~~~~~tiiivtH~~----------~~~~-~~d~v~~l~~G~ 236 (263)
. .+..+.++++.+.+ .|+|+|++||+. ..+. .||+|++|++|+
T Consensus 386 ~~~~~~~~~~i~~ll~~l~~--~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 386 GVSNNAFRQFVIGVTGYAKQ--EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hCChHHHHHHHHHHHHHHHh--CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9 99999999988754 378999999998 6664 699999999886
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-30 Score=219.25 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=92.9
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc-------------CceEEEecCCCCcccccC-H
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-------------RPKSFVFQNPDHQVVMPT-V 117 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~-------------~~~~~v~q~~~~~~~~~t-v 117 (263)
..|+||||+|++|++++|+||||||||||+|+|+|++ | |+|.+. ..++|+||++..+... + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDK-LKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHH-HHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHh-hhc
Confidence 4799999999999999999999999999999999998 6 999871 2357778765321110 0 0
Q ss_pred HHHHHhh---ccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHH-----HHHHhhCCCEEEEeCCCCCC
Q 024738 118 EADVAFG---LGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAI-----AGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 118 ~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l-----Aral~~~p~llllDEPts~L 189 (263)
.+++.++ ...++.. ...+.++++...+. .++ .+|||||+||++| ||+|+.+|++++|||||+++
T Consensus 87 ~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp TCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred cchhhhhhcccccCCCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 0111110 0111111 12345566654332 222 5799999999999 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 024738 190 DESDQFGVIEAVKNLLG 206 (263)
Q Consensus 190 D~~~~~~l~~~l~~l~~ 206 (263)
|..+...+.+.+.+...
T Consensus 159 d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 159 NTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99988888888887643
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=201.96 Aligned_cols=86 Identities=23% Similarity=0.168 Sum_probs=77.4
Q ss_pred CCCCC-CCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 153 QRPVQ-TLSGGQKQRVAIAGALA---------EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 153 ~~~~~-~LSgGqkqRv~lAral~---------~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----cEEEEEEec-cc
Confidence 34456 79999999999999999 8999999999999999999999999998762 599999994 44
Q ss_pred hhcCCEEEEEeCCEEEEecChhhH
Q 024738 223 LEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 223 ~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
.||++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998876
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-27 Score=215.68 Aligned_cols=162 Identities=20% Similarity=0.187 Sum_probs=126.8
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCC-Ccccc
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPD-HQVVM 114 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~-~~~~~ 114 (263)
.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|++. ..+ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p-~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA-A 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH-H
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh-h
Confidence 578999999999999999999999999999999999999998843 3789999864 332 2
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDES 192 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~~ 192 (263)
.++.+++.++... +.. ..+++.+|+.+..++++.+|| +||++||||++.+|+ +|+|| ||+|||+.
T Consensus 227 ~tv~e~l~~~~~~-~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 227 TVLSKAVKRGKEE-GYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHHT-TCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hhHHHHHHHHHhC-CCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 3888998775321 111 124566788777777888999 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccC---------cchh-hcCCEEEEEeCCEE
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTHR---------LEEL-EYADGAFYMEDGKI 237 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH~---------~~~~-~~~d~v~~l~~G~i 237 (263)
.+. +++.+. .+.|+|++||. +..+ .....|.++..|+.
T Consensus 294 ~~~------~~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 294 PQA------REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHH------HHHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHH------HHHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 653 233222 36899999993 3333 25789999999864
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-26 Score=232.44 Aligned_cols=167 Identities=22% Similarity=0.157 Sum_probs=121.3
Q ss_pred ceEEEEe-----EEEEECCCccccccceeceeeEEeC-------CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 32 VAIECSN-----LNYSITKKQRKLVPILRDCSFSVPS-------GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 32 ~~l~~~n-----l~~~y~~~~~~~~~iL~~vsl~i~~-------Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.+|+++| |++.|.+. ..+++|++|++++ |++++|+||||||||||||++ |++.+ ..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~----~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------~a 816 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD----DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------MA 816 (1022)
T ss_dssp CCEEEEEECCCC------CC----CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------HH
T ss_pred ceEEEEeccccEEEEEecCC----ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------Hh
Confidence 4799999 99999322 2699999999987 999999999999999999999 99865 23
Q ss_pred ceE-EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 100 PKS-FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 100 ~~~-~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
++| ||||++. .+ ++.+++.. ++|+.+...+..+++|++|++ +++|++++.+|+
T Consensus 817 qiG~~Vpq~~~---~l-~v~d~I~~---------------------rig~~d~~~~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RL-TPIDRVFT---------------------RLGASDRIMSGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TTTCCEESSEE---EE-CCCSBEEE---------------------ECC---------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred heeEEeccCcC---CC-CHHHHHHH---------------------HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCc
Confidence 455 9999752 11 44443311 123333333445678888775 999999999999
Q ss_pred EEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEE
Q 024738 179 VLLLDELTTFLDESDQ-FGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIV 238 (263)
Q Consensus 179 llllDEPts~LD~~~~-~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~ 238 (263)
++|||||++|+|+... ..++.+|..++++ .|.++|++||+.+++. .||++.++ +|++.
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~-~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAET-IKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHT-SCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999999999874 5578888887643 3689999999999985 69998876 47776
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-27 Score=211.70 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=104.5
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|.+++..-+..+ ..++.+.+. .
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~---------~~~~~i~~~------~- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK---------HHKNYTQLF------F- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS---------SCSSEEEEE------C-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc---------cchhEEEEE------e-
Confidence 799999999999999999999999999999999999999999999864211000 000000000 0
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
| |||+||++|||||..+|++||+||||+. ++.+.|+.+.. ++.|
T Consensus 224 --------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~--g~~t 267 (330)
T 2pt7_A 224 --------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS--GHKG 267 (330)
T ss_dssp --------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT--TCCC
T ss_pred --------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc--CCCE
Confidence 0 8999999999999999999999999982 35667776642 2457
Q ss_pred EEEEccCcchhhcCCEEEEEeCCE
Q 024738 213 ALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 213 iiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
+|+++|+.+....|||+++|.+|.
T Consensus 268 vi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 268 TLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEEcccHHHHHhhhheehhcCC
Confidence 999999999667899999998885
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-25 Score=223.55 Aligned_cols=160 Identities=26% Similarity=0.287 Sum_probs=126.2
Q ss_pred HHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh------H---HHHHHHHHHHHHcCCCc
Q 024738 80 LLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH------D---EVRSKVAKALDAVGMSN 150 (263)
Q Consensus 80 Llk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~------~---~~~~~~~~~l~~~~l~~ 150 (263)
...|..+.++|..|+|.+++.- +.+ +...++.+++.+.. ...+.. . +..++..+.+..+||..
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~--i~~-----~~~~~v~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~ 455 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLN--IHE-----FTELSISEELEFLK-NLNLTEREREIVGELLKEIEKRLEFLVDVGLEY 455 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEE--HHH-----HHHSBHHHHHHHHH-SCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTT
T ss_pred chhcccccCChHhcCcEECCcc--HHH-----hhhCCHHHHHHHHH-hccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcc
Confidence 4456667788999999998742 111 11127778776632 221111 0 11123446788899985
Q ss_pred c-cCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 151 Y-LQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 151 ~-~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
. +++++.+|||||+|||+|||||+.+|+ +|||||||+|||+....++++.|+++.+ .|.|||+||||++.+..||
T Consensus 456 l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~--~G~TvivVtHd~~~~~~aD 533 (916)
T 3pih_A 456 LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD--LGNTVIVVEHDEEVIRNAD 533 (916)
T ss_dssp CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT--TTCEEEEECCCHHHHHTCS
T ss_pred ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhCC
Confidence 4 789999999999999999999999887 9999999999999999999999999854 3789999999999887899
Q ss_pred EEEEE------eCCEEEEecChhhHHhh
Q 024738 228 GAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 228 ~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
+|++| ++|++++.|+++++++.
T Consensus 534 ~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 534 HIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp EEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred EEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 99999 89999999999998765
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-25 Score=209.70 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=72.6
Q ss_pred CCCCCC-ChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEE
Q 024738 154 RPVQTL-SGGQKQRVAIAGALAEAC--KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAF 230 (263)
Q Consensus 154 ~~~~~L-SgGqkqRv~lAral~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~ 230 (263)
+++.+| ||||+|||+|||||+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||+++.+..||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~---~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH---HSEEEEECCCHHHHHHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhCCEEE
Confidence 456778 999999999999999999 99999999999999999999999999864 479999999999888899999
Q ss_pred EEeCC
Q 024738 231 YMEDG 235 (263)
Q Consensus 231 ~l~~G 235 (263)
+|.++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-28 Score=230.79 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=115.5
Q ss_pred eEEEEeEEEEECCCccccccceeceee-EEeCCCEEEEECCCCCcHHHHHHH--HhCCCCCCceEEEEcCc---------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSF-SVPSGQLWMLLGPNGCGKSTLLKV--LAGLLKPTNGHVYVKRP--------- 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl-~i~~Ge~~~l~G~NGsGKSTLlk~--i~Gl~~p~~G~I~~~~~--------- 100 (263)
+++.+++.+.+++ .++|+++|| .|++|++++|+||||||||||+++ ++|+.+|++|.|++.+.
T Consensus 12 ~~~~~~~~~~~~g-----~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~ 86 (525)
T 1tf7_A 12 NSEHQAIAKMRTM-----IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKN 86 (525)
T ss_dssp --CCSSCCEECCC-----CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHH
T ss_pred CccccccccccCC-----chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHH
Confidence 4566666554433 369999999 999999999999999999999999 78999999999998652
Q ss_pred ---eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC
Q 024738 101 ---KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC 177 (263)
Q Consensus 101 ---~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 177 (263)
+||++|++... .++.+ ..... . +...++++.+++.+.+++.+.+||+ .+|
T Consensus 87 ~~~~g~~~q~~~~~-------~~l~~-~~~~~-~-----~~~~~~l~~~~l~~~~~~~~~~LS~-------------g~~ 139 (525)
T 1tf7_A 87 ARSFGWDLAKLVDE-------GKLFI-LDASP-D-----PEGQEVVGGFDLSALIERINYAIQK-------------YRA 139 (525)
T ss_dssp HGGGTCCHHHHHHT-------TSEEE-EECCC-C-----SSCCSCCSSHHHHHHHHHHHHHHHH-------------HTC
T ss_pred HHHcCCChHHhhcc-------CcEEE-EecCc-c-----cchhhhhcccCHHHHHHHHHHHHHH-------------cCC
Confidence 45555543210 00000 00000 0 0000122222333333333444444 468
Q ss_pred CEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh---------h-cCCEEEEEeC
Q 024738 178 KVLLLDELTT-----FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL---------E-YADGAFYMED 234 (263)
Q Consensus 178 ~llllDEPts-----~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~---------~-~~d~v~~l~~ 234 (263)
+++++||||+ +||+..++.++++++++.+ .|+|||++||+++++ + +||+|++|++
T Consensus 140 ~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~--~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 140 RRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ--IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp SEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH--CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 8999999998 4699999999999999865 378999999999874 4 4999999998
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-26 Score=228.35 Aligned_cols=170 Identities=19% Similarity=0.196 Sum_probs=119.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHH--------hCCCCCCceEEEEcCceEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVL--------AGLLKPTNGHVYVKRPKSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i--------~Gl~~p~~G~I~~~~~~~~v 104 (263)
.|++++...-+-....+...+++|++|++++|++++|+||||||||||||++ .|..-|.++.. ++.+
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----~~~~ 705 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----VSIV 705 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----EECC
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----chHH
Confidence 5777776544322111123689999999999999999999999999999999 56544443321 0100
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH--hhCCCEEEE
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL--AEACKVLLL 182 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~llll 182 (263)
. +++.++|+.+ .....+|+||+++..+|+++ +.+|+++||
T Consensus 706 d-----------------------------------~i~~~ig~~d---~l~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 706 D-----------------------------------CILARVGAGD---SQLKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp S-----------------------------------EEEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred H-----------------------------------HHHHhcCchh---hHHHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 0 0111222222 22345788888888888888 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 183 DELTTFLDESDQFGV-IEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 183 DEPts~LD~~~~~~l-~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
||||+|+|+.....+ +.++..+.++ .|+++|++||+.+...+||++..+.+|++...++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~-~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATK-IGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHT-TCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999988888 6666666542 36899999999887889999999999999887766554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=192.71 Aligned_cols=173 Identities=14% Similarity=0.163 Sum_probs=114.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEEc-Cce---------EEEecCCCCcccccCHHHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-HVYVK-RPK---------SFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~-~~~---------~~v~q~~~~~~~~~tv~~~ 120 (263)
++|+++++.|++|++++|+||||||||||++.|+|...|++| .|.+. ... ..+++... . ...++
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~-~~~~~ 97 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR----L-RQSDS 97 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----G-GGCHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----h-hhccc
Confidence 589999999999999999999999999999999999999877 66432 110 00111100 0 00011
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-H
Q 024738 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ-KQRVAIAGALAEACKVLLLDELTT---F---LDE-S 192 (263)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq-kqRv~lAral~~~p~llllDEPts---~---LD~-~ 192 (263)
+..+ ....++..+.+.++++..++ .+...+..+|.++ +||+. |+++..+|++||+||||+ + +|. .
T Consensus 98 l~~~----~~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~ 170 (296)
T 1cr0_A 98 LKRE----IIENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERK 170 (296)
T ss_dssp HHHH----HHHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CH
T ss_pred cccC----CCCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHH
Confidence 1110 00111222333334333233 2334456789999 66666 999999999999999999 5 555 6
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccCc--c--------------------hh-hcCCEEEEEeCCEE
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTHRL--E--------------------EL-EYADGAFYMEDGKI 237 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH~~--~--------------------~~-~~~d~v~~l~~G~i 237 (263)
....+.+.|++++++ .|+|||++||+. + .+ ..||+|++|++|+.
T Consensus 171 ~~~~i~~~L~~la~~-~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 171 MIDNLMTKLKGFAKS-TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHH-HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHH-hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 678899999998764 368999999995 4 55 47999999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-24 Score=213.32 Aligned_cols=130 Identities=28% Similarity=0.391 Sum_probs=112.0
Q ss_pred CHHHHHHhhccCCCCCh----------HHHHHHHHHHHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHhhCC--CEEEE
Q 024738 116 TVEADVAFGLGNLNLTH----------DEVRSKVAKALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALAEAC--KVLLL 182 (263)
Q Consensus 116 tv~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~llll 182 (263)
||.+++.| +.+..++. +++.+++ +.+..+||..+ +++++.+|||||+|||+||++|..+| ++|||
T Consensus 453 tV~e~~~f-~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llIL 530 (972)
T 2r6f_A 453 SVTEALAF-FDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVL 530 (972)
T ss_dssp BHHHHHHH-HHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEE
T ss_pred CHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 78888887 44444444 2344555 46899999864 79999999999999999999999985 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEE------eCCEEEEecChhhHHhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYM------EDGKIVMQADGVSILNF 249 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 249 (263)
||||++||+...+++++.|+++.+ .|.|||+||||++++..||+|++| ++|++++.|+++++.+.
T Consensus 531 DEPTagLdp~~~~~L~~~L~~Lr~--~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 531 DEPSIGLHQRDNDRLIATLKSMRD--LGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp ECTTTTCCGGGHHHHHHHHHHHHT--TTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred eCcccCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 999999999999999999999854 478999999999998889999999 79999999999988763
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-26 Score=204.23 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=91.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 135 (263)
.++|+||||||||||+|+|+|+..|++|+|.+++ .+++++|++.....+ |+.+|+.++....+.. .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~l-tv~d~~~~g~~~~~~~---~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL-TVIDTPGFGDQINNEN---C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEE-EEECCCC--CCSBCTT---C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCc-eEEechhhhhhcccHH---H
Confidence 4899999999999999999999999999998854 479999987644333 8888877764322211 1
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 024738 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215 (263)
Q Consensus 136 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiii 215 (263)
.+.+.+.+. ..+.++.+.+|||||+||+++|||++. ++++|||+++||+... +.++.+.+ . .+||+
T Consensus 80 ~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~~--~-~~vI~ 145 (270)
T 3sop_A 80 WEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLSK--V-VNIIP 145 (270)
T ss_dssp SHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHHT--T-SEEEE
T ss_pred HHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHHh--c-CcEEE
Confidence 122223322 334556678999999999999999876 9999999999999873 45555543 2 58888
Q ss_pred EccCcchh
Q 024738 216 VTHRLEEL 223 (263)
Q Consensus 216 vtH~~~~~ 223 (263)
+.|..+.+
T Consensus 146 Vi~K~D~l 153 (270)
T 3sop_A 146 VIAKADTM 153 (270)
T ss_dssp EETTGGGS
T ss_pred EEeccccC
Confidence 88877643
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-24 Score=219.69 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=105.9
Q ss_pred eEEEEeEEEEECCC--ccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcCceEEEecCCC
Q 024738 33 AIECSNLNYSITKK--QRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKRPKSFVFQNPD 109 (263)
Q Consensus 33 ~l~~~nl~~~y~~~--~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~~~~~v~q~~~ 109 (263)
.|++++...-+=.. ..+...|++|+||++++|++++|+||||||||||||+++++... ..| .++|+...
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------~~vpa~~~ 711 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------SYVPAEEA 711 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------CCBSSSEE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------ccccchhh
Confidence 56776654432000 00124689999999999999999999999999999999864211 001 12222110
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
.. .+ +.+++..+|+.+.+.+..+.+|+||+|++.|+++ +.+|+++||||||+||
T Consensus 712 ---~i-~~---------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~Gl 765 (918)
T 3thx_B 712 ---TI-GI---------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGT 765 (918)
T ss_dssp ---EE-EC---------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTS
T ss_pred ---hh-hH---------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCC
Confidence 00 00 0012233444445556678999999999999999 8999999999999999
Q ss_pred CHHHHHHHH-HHHHHHHhcCCCcEEEEEccCcchhhcCCE
Q 024738 190 DESDQFGVI-EAVKNLLGDSGEVTALWVTHRLEELEYADG 228 (263)
Q Consensus 190 D~~~~~~l~-~~l~~l~~~~~~~tiiivtH~~~~~~~~d~ 228 (263)
|+.....+. .++..++++ .|+|+|++||+.+.+++||+
T Consensus 766 D~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 766 STHDGIAIAYATLEYFIRD-VKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCCEEEEECSCGGGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcHHHHHHHhh
Confidence 999998887 666666543 46899999999988665443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=187.83 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=68.3
Q ss_pred CCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEE
Q 024738 156 VQTLSGGQKQRVAIAGALA----EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFY 231 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~ 231 (263)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.. .+.++|++||+...+..||++++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHhCCEEEE
Confidence 4569999999999999999 58999999999999999999999999998743 25799999999777788999999
Q ss_pred Ee
Q 024738 232 ME 233 (263)
Q Consensus 232 l~ 233 (263)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-24 Score=189.37 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=107.7
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---cCceEEEecCCCCcccccCHHHHHHhhccC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---KRPKSFVFQNPDHQVVMPTVEADVAFGLGN 127 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~ 127 (263)
.++|+|+||++++|+++||+||||||||||+|+|+|++ |.+.+ ...++|++|+. .+.. .++.+++.+....
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~-l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKV-LTAEQKAKALKGQ 85 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCC-CCHHHHHHHHTTC
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-Cccc-cCHhHhhhhhccC
Confidence 46999999999999999999999999999999999976 44433 34688999984 2222 3888887665433
Q ss_pred CCCChHH--HHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 128 LNLTHDE--VRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 128 ~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
..+...+ ..+.+.+.++.+ ....+.++..||+||+||+++ ++++.+|+++|+|||....|.. +.++
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~- 153 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM- 153 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT-
T ss_pred CCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh-
Confidence 3322111 123344455543 344566788999999999988 6888999999999999888764 2222
Q ss_pred hcCCCcEEEEEccCcchh-h-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 206 GDSGEVTALWVTHRLEEL-E-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 206 ~~~~~~tiiivtH~~~~~-~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+.+|+++||+...+ + .++++ ++|+ +.+++.+.
T Consensus 154 ---~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 154 ---FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp ---CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred ---cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 257999999974444 4 34444 6664 45555543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-24 Score=188.48 Aligned_cols=139 Identities=18% Similarity=0.241 Sum_probs=101.7
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEcC-ceEEEecCCCCc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVKR-PKSFVFQNPDHQ 111 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~~-~~~~v~q~~~~~ 111 (263)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+ .+.|++|.+...
T Consensus 6 ~~l~~l~~~---------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP---------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI 74 (261)
T ss_dssp CCGGGSSCC---------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE
T ss_pred CChHHCCCH---------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee
Confidence 455666532 3899999 8999999999999999999999999999998 99998765 355555432100
Q ss_pred ccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 112 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
. . . ..+|++. ..| |++||+||..+|++|++|||| |+
T Consensus 75 --v----------~------q-----------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 --V----------N------Q-----------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp --E----------E------E-----------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred --e----------e------H-----------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 0 0 0 0233332 122 899999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEe
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYME 233 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~ 233 (263)
.+...++ +. +. .|.+|+++||+.+....|||+++|.
T Consensus 111 ~~~~~~l---~~-~~--~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETAL---RA-AE--TGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHH---HH-HH--TTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHH---HH-Hc--cCCEEEEEeCcchHHHHHHHHhhhc
Confidence 8865443 33 22 2679999999988656677765543
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=163.61 Aligned_cols=83 Identities=31% Similarity=0.443 Sum_probs=73.8
Q ss_pred cCCCCCCCChHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhc
Q 024738 152 LQRPVQTLSGGQKQRVAIA------GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEY 225 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lA------ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~ 225 (263)
.++++.+||||||||++|| |||+.+|+++||||||+|||+..+..+.+.|.++.++ |.|||++|||.+....
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--IPQVILVSHDEELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG--SSEEEEEESCGGGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc--CCEEEEEEChHHHHHh
Confidence 4678999999999999876 8999999999999999999999999999999997543 5799999999965578
Q ss_pred CCEEEEE--eCCE
Q 024738 226 ADGAFYM--EDGK 236 (263)
Q Consensus 226 ~d~v~~l--~~G~ 236 (263)
||++++| .+|.
T Consensus 129 ~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 129 ADHVIRISLENGS 141 (148)
T ss_dssp CSEEEEEEEETTE
T ss_pred CCEEEEEEcCCCe
Confidence 9999999 4554
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-23 Score=205.02 Aligned_cols=146 Identities=22% Similarity=0.203 Sum_probs=103.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEc--CceEEEecCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-PTNGHVYVK--RPKSFVFQNPD 109 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~--~~~~~v~q~~~ 109 (263)
.|++++...-+-.. ....+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+.-. ..+++++|-
T Consensus 550 ~i~i~~~rHP~le~--~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i-- 622 (765)
T 1ewq_A 550 RLQIRAGRHPVVER--RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGI-- 622 (765)
T ss_dssp SEEEEEECCTTGGG--TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEE--
T ss_pred cEEEEEeECceEcc--CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHh--
Confidence 47777763322000 124689999999 99999999999999999999999874 677764211 123333331
Q ss_pred CcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC--
Q 024738 110 HQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL--AEACKVLLLDEL-- 185 (263)
Q Consensus 110 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~llllDEP-- 185 (263)
+..+ ++.+|+. ..+|+||+|++.+|+++ +.+|+++|||||
T Consensus 623 -~~~~-~~~d~l~----------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 623 -YTRI-GASDDLA----------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp -EEEC-CC----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred -hccC-CHHHHHH----------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 0001 2333221 24689999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 186 -TTFLDESDQ-FGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 186 -ts~LD~~~~-~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
|++||+.+. ..+++.|.+ .|.|+|++||+.++...|
T Consensus 667 GTs~lD~~~~~~~i~~~L~~-----~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE-----RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-----HTCEEEEECCCHHHHTCC
T ss_pred CCCCcCHHHHHHHHHHHHHh-----CCCEEEEEeCCHHHHHhh
Confidence 999999876 467777765 157999999998886654
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-25 Score=186.89 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=114.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcc-cccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQV-VMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
.++|++++|+||||||||||+++|+|++.| .++|++|++.... ...++.++..+.+. .......+++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYD---HPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTT---SGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCC---ChhhhhHHHH
Confidence 478999999999999999999999999876 5789999874321 12277777655321 1111123456
Q ss_pred HHHHHHcCCCcccCCCCCCCChHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhcC
Q 024738 140 AKALDAVGMSNYLQRPVQTLSGGQK----QRVAIAGALAEACKVLLLDELTTF-------LDESDQFGVIEAVKNLLGDS 208 (263)
Q Consensus 140 ~~~l~~~~l~~~~~~~~~~LSgGqk----qRv~lAral~~~p~llllDEPts~-------LD~~~~~~l~~~l~~l~~~~ 208 (263)
.++++.+++.+..++++.++|+||+ ||+++|++++.+|+++++||||++ ||+.....+.+.+.+...+
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~- 149 (211)
T 3asz_A 71 LEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE- 149 (211)
T ss_dssp HHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH-
Confidence 6778888888777788999999974 788999999999999999999999 9999999999988875432
Q ss_pred CCcEEEEEccCc
Q 024738 209 GEVTALWVTHRL 220 (263)
Q Consensus 209 ~~~tiiivtH~~ 220 (263)
+|.|++.++|++
T Consensus 150 ~g~t~~~~~~~~ 161 (211)
T 3asz_A 150 RGRSLEGVVAQY 161 (211)
T ss_dssp SCCCHHHHHHHH
T ss_pred hCCCHHHHHHHH
Confidence 367899999985
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-22 Score=167.54 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=110.8
Q ss_pred ccceeceee-EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHH-hhccCC
Q 024738 51 VPILRDCSF-SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA-FGLGNL 128 (263)
Q Consensus 51 ~~iL~~vsl-~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~-~~~~~~ 128 (263)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+.+|.|.+. ..+.. ...+...+. ++....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~------~~~~~----~~~~~~~~~~~~~~~~ 78 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV------TTEES----RDSIIRQAKQFNWDFE 78 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE------ESSSC----HHHHHHHHHHTTCCCG
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE------EcccC----HHHHHHHHHHhcchHH
Confidence 357899998 899999999999999999999999999887777766542 22110 001111111 111000
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHH
Q 024738 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFL--DESDQFGVIEAVKNL 204 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~L--D~~~~~~l~~~l~~l 204 (263)
...... ...+......++ ..+ .....|.++.++...+.+...+|+ ++++||||+.+ |+..+..+++.|+++
T Consensus 79 ~~~~~~-~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~ 153 (235)
T 2w0m_A 79 EYIEKK-LIIIDALMKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRV 153 (235)
T ss_dssp GGBTTT-EEEEECCC-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHH
T ss_pred HHhhCC-EEEEeccccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHH
Confidence 000000 000000000001 111 113459999999988888888999 99999999888 999999999999998
Q ss_pred HhcCCCcEEEEEccCc--------chh-hcCCEEEEEeCC
Q 024738 205 LGDSGEVTALWVTHRL--------EEL-EYADGAFYMEDG 235 (263)
Q Consensus 205 ~~~~~~~tiiivtH~~--------~~~-~~~d~v~~l~~G 235 (263)
+++ .|+|||++||+. ..+ ..||++++|+..
T Consensus 154 ~~~-~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 154 LNK-WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHH-TTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHh-CCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 754 478999999999 346 479999999864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=166.14 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=93.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
-|++|++++|+||||||||||+++|+|+..|..|.....+...|+..... + . .+.+.......++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~--~-~~~i~~~~~~~~~~~~------ 88 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---F--R-PERIREIAQNRGLDPD------ 88 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---C--C-HHHHHHHHHHTTSCHH------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---C--C-HHHHHHHHHHcCCCHH------
Confidence 79999999999999999999999999966553332222222223322211 0 0 0111111111122211
Q ss_pred HHHHHHcCCCcccCCCCCCCChHHH-HHHHHHHHHhh-------CCCEEEEeCCCCCCCHH-------H-----HHHHHH
Q 024738 140 AKALDAVGMSNYLQRPVQTLSGGQK-QRVAIAGALAE-------ACKVLLLDELTTFLDES-------D-----QFGVIE 199 (263)
Q Consensus 140 ~~~l~~~~l~~~~~~~~~~LSgGqk-qRv~lAral~~-------~p~llllDEPts~LD~~-------~-----~~~l~~ 199 (263)
.+.+.+.+ ...++.+++ +.+..+++++. +|+++++|||++++|+. . ...+++
T Consensus 89 -~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~ 160 (231)
T 4a74_A 89 -EVLKHIYV-------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 160 (231)
T ss_dssp -HHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHH
T ss_pred -HHhhcEEE-------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHH
Confidence 12222211 122344443 33566666665 99999999999999984 1 236777
Q ss_pred HHHHHHhcCCCcEEEEEccCcch----hh-cCCEEEEEeCCE
Q 024738 200 AVKNLLGDSGEVTALWVTHRLEE----LE-YADGAFYMEDGK 236 (263)
Q Consensus 200 ~l~~l~~~~~~~tiiivtH~~~~----~~-~~d~v~~l~~G~ 236 (263)
.|.+++++ .|+|||++||.... +. .||++++|++|+
T Consensus 161 ~l~~~~~~-~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 161 DLHRLANL-YDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHH-HTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHH-CCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 78777654 36899999996554 64 699999998753
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-24 Score=190.58 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=82.9
Q ss_pred EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEEc----------CceEEEe
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL-LKPTNGHVYVK----------RPKSFVF 105 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~p~~G~I~~~----------~~~~~v~ 105 (263)
+||+++|+++ .++++++|+| +|+||||||||||+++|+|. ..|++| |.+. ..+++++
T Consensus 2 ~~l~~~~~~~-----~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK-----SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEI 69 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEE
T ss_pred CCCcceECCE-----EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEe
Confidence 4889999764 5999999998 99999999999999999998 888888 5432 2367888
Q ss_pred cCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 106 QNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
|.......+ ++.++..++.... ..+ ....+.+. +.+..++++.++|||||||+.+|||++ ++++|||
T Consensus 70 q~~~~~~~l-tv~Dt~g~~~~~~---~~e---~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldeP 136 (301)
T 2qnr_A 70 EERGVKLRL-TVVDTPGYGDAIN---CRD---CFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISP 136 (301)
T ss_dssp C---CCEEE-EEEEEC-----------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECS
T ss_pred cCCCcccCc-chhhhhhhhhhcC---cHH---HHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecC
Confidence 865432222 5555443321110 000 00111111 122345677899999999999999885 9999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc
Q 024738 186 TTF-LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE 221 (263)
Q Consensus 186 ts~-LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~ 221 (263)
|++ ||+... +.++++.. ..+.++|+++||+.
T Consensus 137 t~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 137 FGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGGS
T ss_pred cccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCCC
Confidence 985 999874 55555543 33689999999974
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-22 Score=165.60 Aligned_cols=165 Identities=12% Similarity=0.144 Sum_probs=102.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEEcC------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-----KPTNGHVYVKR------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----~p~~G~I~~~~------~~ 101 (263)
+|+++|++|+|+. +++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|++.+.+ .+
T Consensus 3 ~l~~~~~~~~~~~------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~ 74 (210)
T 1pui_A 3 NLNYQQTHFVMSA------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 74 (210)
T ss_dssp --------CEEEE------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred chhhhhhhheeec------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence 5899999999963 47888 899999999999999999999999999998 88888875422 11
Q ss_pred EEEecCCCCccc---c---cCHHHHHHhhcc------------CCCCChHHHHHHHHHHHHHcCCCcc-cCCCCCCCChH
Q 024738 102 SFVFQNPDHQVV---M---PTVEADVAFGLG------------NLNLTHDEVRSKVAKALDAVGMSNY-LQRPVQTLSGG 162 (263)
Q Consensus 102 ~~v~q~~~~~~~---~---~tv~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG 162 (263)
. +.+.|..... . ......+...+. ............+.++++..++... ...++..+|+|
T Consensus 75 ~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 75 R-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp E-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHH
T ss_pred E-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCch
Confidence 1 1222211000 0 001111111100 0011111223345567777788753 35668899999
Q ss_pred HHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 024738 163 QKQR-VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 163 qkqR-v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~ 206 (263)
|+|| +..+++++.+|+++++|||||++|..+..++++.|.++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 154 ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 9999 8999999999999999999999999999999999998764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-24 Score=206.44 Aligned_cols=179 Identities=14% Similarity=0.169 Sum_probs=108.5
Q ss_pred eEEEEeEEEEECCCccccccceece----------eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcC--
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDC----------SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKR-- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~v----------sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~-- 99 (263)
.++++||++.|+.+. .++|+.+ +|+++. +||+|||||||||||++|+|+..| ++|.|++++
T Consensus 10 ~i~~~~l~~~~~~~~---r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 10 SVAENNLCSQYEEKV---RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLV 83 (608)
T ss_dssp ----------CHHHH---HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEE
T ss_pred hhhhhhhhHHHHHHH---HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEE
Confidence 588999999997531 2355544 366665 999999999999999999999988 799987643
Q ss_pred --------------ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHH
Q 024738 100 --------------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 --------------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq 165 (263)
.++|+||++..... .++.+|+.++.. .++... ..+| ++
T Consensus 84 i~~~~~~~~~~~~~~i~~v~Q~~~l~~~-~tv~e~i~~~~~------------------~~~~~~------~~~s---~~ 135 (608)
T 3szr_A 84 LKLKKLVNEDKWRGKVSYQDYEIEISDA-SEVEKEINKAQN------------------AIAGEG------MGIS---HE 135 (608)
T ss_dssp EEEEECSSSSCCEEEESCC---CCCCCH-HHHHTTHHHHHH------------------HHHCSS------SCCC---SC
T ss_pred EEEecCCccccceeEEeeecccccCCCH-HHHHHHHHHHHH------------------HhcCCc------cccc---hH
Confidence 36788887654332 377777655311 111100 0011 12
Q ss_pred HHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh--------hc-----C
Q 024738 166 RVAIAGALAEACKVLLLDEL------TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL--------EY-----A 226 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEP------ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~--------~~-----~ 226 (263)
++.++.+....|+++|+||| |+|||+..+..+.++++++..+..+.+++++||+++.+ .. .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 22333344468999999999 99999999999999999976655678999999998732 11 3
Q ss_pred CEEEEEeCCEEEEecChhh
Q 024738 227 DGAFYMEDGKIVMQADGVS 245 (263)
Q Consensus 227 d~v~~l~~G~i~~~g~~~~ 245 (263)
..|+++.++.++..|+..+
T Consensus 216 rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp SEEEEEECGGGSSSSSTTC
T ss_pred ceEEEecchhhcCcccHHH
Confidence 5688888888777776543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-22 Score=196.40 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=100.3
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~ 129 (263)
..+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|. ++|+.... . ++.+.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~--------~vpa~~~~---i-~~~~~--------- 652 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS--------YVPAQKVE---I-GPIDR--------- 652 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC--------CBSSSEEE---E-CCCCE---------
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc--------ccchhccc---c-eeHHH---------
Confidence 3689999999 99999999999999999999999997421 2221 22321100 0 00000
Q ss_pred CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcC
Q 024738 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV-IEAVKNLLGDS 208 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l-~~~l~~l~~~~ 208 (263)
++..++..+.+....+.+|++|++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.++
T Consensus 653 ------------i~~~~~~~d~l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~- 718 (800)
T 1wb9_A 653 ------------IFTRVGAADDLASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK- 718 (800)
T ss_dssp ------------EEEEEC-----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-
T ss_pred ------------HHhhCCHHHHHHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc-
Confidence 000111111111223456777765 4445556899999999999999998877765 6777777542
Q ss_pred CCcEEEEEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 209 GEVTALWVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 209 ~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
.|.++|++||+.+...+||++..+.+|++....
T Consensus 719 ~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 719 IKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp TCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred cCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 368999999999887778876666666665443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-21 Score=167.33 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=102.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE------cCceEEEecCCCCcccccCHHHHH-HhhccCCCCCh
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV------KRPKSFVFQNPDHQVVMPTVEADV-AFGLGNLNLTH 132 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~------~~~~~~v~q~~~~~~~~~tv~~~~-~~~~~~~~~~~ 132 (263)
-+++|++++|+||||||||||++.+++... .|.+.+ .+.+.|+..+... ..+...+ .++. ....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~----~~~~~r~~~~g~---~~~~ 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP----TAIHHRLHALGA---HLSA 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH----HHHHHHHHHHHT---TSCH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH----HHHHHHHHHHHh---hcCh
Confidence 478999999999999999999999998654 344422 1234555443211 1122222 1221 1221
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHHHHHHHHHHhc
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT--FLDESD---QFGVIEAVKNLLGD 207 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts--~LD~~~---~~~l~~~l~~l~~~ 207 (263)
....++++.+++.+..++++..||+||+|++ ++++.+|+++|+||||+ ++|+.. ...+++.|++++++
T Consensus 97 ----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 97 ----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp ----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 2345677888888888889999999998765 68889999999999999 999744 47888888888654
Q ss_pred CCCcEEEEEccCcchh
Q 024738 208 SGEVTALWVTHRLEEL 223 (263)
Q Consensus 208 ~~~~tiiivtH~~~~~ 223 (263)
.|+|||+++|+....
T Consensus 170 -~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 170 -TGCSIVFLHHASKGA 184 (279)
T ss_dssp -HCCEEEEEEEC----
T ss_pred -cCCEEEEEecCCCcc
Confidence 368999999998764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-23 Score=172.97 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=98.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
|++++|+||||||||||+++|+|+++ ++| |.+++ .++|++|+.... ..++ .......
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~------~~~l----~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGT------RGPL----SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSC------EEEE----EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccc------eehh----hcccccC
Confidence 78999999999999999999999998 889 86643 467888864210 0111 0010100
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHh
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV-AIAG---ALAEACKVLLLDE--LTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv-~lAr---al~~~p~llllDE--Pts~LD~~~~~~l~~~l~~l~~ 206 (263)
. .....+...++...+|+|||+++ ++++ |++.+|++||+|| |++.+|+...+.+.+++.+
T Consensus 69 ~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~--- 134 (189)
T 2i3b_A 69 P-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST--- 134 (189)
T ss_dssp C-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---
T ss_pred C-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---
Confidence 0 00111245566678999999988 4455 6899999999999 8999999876666555542
Q ss_pred cCCCcEEE----EEccCcchhhcCCEEEEEeCCEEEEec
Q 024738 207 DSGEVTAL----WVTHRLEELEYADGAFYMEDGKIVMQA 241 (263)
Q Consensus 207 ~~~~~tii----ivtH~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
. .++| .+||+.. ..++|+|..+.+|+++...
T Consensus 135 -~--~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 135 -P--GTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -S--SCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred -C--CcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 2 2344 3459874 3455666666778877643
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-22 Score=179.43 Aligned_cols=153 Identities=19% Similarity=0.127 Sum_probs=99.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCCCcccccCHHHHHHh
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
+|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|++...+. .++.+|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~-~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSA-ALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHH-HHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHH-HHHHHHHHH
Confidence 6999999999999999999999999999999998843 26788887653322 267777665
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHH
Q 024738 124 GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK--VLLLDELTTFLDESDQFGVIEAV 201 (263)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--llllDEPts~LD~~~~~~l~~~l 201 (263)
+... +.. ..+++..|+.+ .....++..++||++||||++.+|+ ++.|| |+++ ..+++.+
T Consensus 180 ~~~~-~~d--------~~llDt~G~~~---~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~~~~~~ 240 (304)
T 1rj9_A 180 MKAR-GYD--------LLFVDTAGRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QNGLEQA 240 (304)
T ss_dssp HHHH-TCS--------EEEECCCCCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------THHHHHH
T ss_pred HHhC-CCC--------EEEecCCCCCC---chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HHHHHHH
Confidence 3210 000 00122233322 2222345555899999999999999 45555 4444 4455555
Q ss_pred HHHHhcCCCcEEEEEccCcchhhc----------CCEEEEEeCCE
Q 024738 202 KNLLGDSGEVTALWVTHRLEELEY----------ADGAFYMEDGK 236 (263)
Q Consensus 202 ~~l~~~~~~~tiiivtH~~~~~~~----------~d~v~~l~~G~ 236 (263)
+++.+. .+.|+|++||+.+..+. --.|.++..|+
T Consensus 241 ~~~~~~-~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 241 KKFHEA-VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHH-HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHH-cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 555432 25799999998654321 13566666665
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-21 Score=177.90 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=99.3
Q ss_pred cceece-eeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCc----eE-EEEcCceEEEecCCCCcccccCHHHHHHh
Q 024738 52 PILRDC-SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL--KPTN----GH-VYVKRPKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 52 ~iL~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~----G~-I~~~~~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |+++..-. +. .+.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~----------~~---~~~i~~ 184 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----------FR---PERIRE 184 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC----------CC---HHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC----------CC---HHHHHH
Confidence 457776 6899999999999999999999999999998 6776 56 55543210 00 111221
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH---
Q 024738 124 GLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA-------EACKVLLLDELTTFLDESD--- 193 (263)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-------~~p~llllDEPts~LD~~~--- 193 (263)
.+...++... .+++.+-+.. . .-|.+++|++.++++++ .+|++||+||||+++|+..
T Consensus 185 i~q~~~~~~~-------~v~~ni~~~~----~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~ 251 (349)
T 1pzn_A 185 IAQNRGLDPD-------EVLKHIYVAR----A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR 251 (349)
T ss_dssp HHHTTTCCHH-------HHGGGEEEEE----C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST
T ss_pred HHHHcCCCHH-------HHhhCEEEEe----c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc
Confidence 1112222211 1122211111 0 12678889999999988 6899999999999999852
Q ss_pred ---------HHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEEEEEeCCEEEEec
Q 024738 194 ---------QFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQA 241 (263)
Q Consensus 194 ---------~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v~~l~~G~i~~~g 241 (263)
..+++..|++++++ .++|||+++|...... .++.......|++++++
T Consensus 252 ~~~~~r~~~~~~~l~~L~~la~~-~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 252 GALAERQQKLAKHLADLHRLANL-YDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECC---------------CCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-cCcEEEEEcccccccccccCCccccCCcceEeec
Confidence 45666777777654 4689999999876543 23334445555544443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-21 Score=173.95 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=93.6
Q ss_pred EeEEEEECCCccccccceeceee-------EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEc-CceE-----
Q 024738 37 SNLNYSITKKQRKLVPILRDCSF-------SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVK-RPKS----- 102 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl-------~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~-~~~~----- 102 (263)
.+++++|-... .+.|+++.+ ...+|++++|+|||||||||||++|+|+++|+ +|.|... ..+.
T Consensus 92 ~~~~iR~~~~~---~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~ 168 (356)
T 3jvv_A 92 AGAVFRTIPSK---VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES 168 (356)
T ss_dssp EEEEEEEECCS---CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC
T ss_pred cEEEEEECCCC---CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc
Confidence 35566664321 346677776 77889999999999999999999999999887 5665431 1111
Q ss_pred ---EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 024738 103 ---FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179 (263)
Q Consensus 103 ---~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 179 (263)
++.|... + ...++..+ +||+||..+|++
T Consensus 169 ~~~~v~q~~~-------------------~--------------------------~~~~~~~~----~La~aL~~~Pdv 199 (356)
T 3jvv_A 169 KKCLVNQREV-------------------H--------------------------RDTLGFSE----ALRSALREDPDI 199 (356)
T ss_dssp SSSEEEEEEB-------------------T--------------------------TTBSCHHH----HHHHHTTSCCSE
T ss_pred cccceeeeee-------------------c--------------------------cccCCHHH----HHHHHhhhCcCE
Confidence 1111100 0 00011111 999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 180 lllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
|++|||+ |..... .+.+.+. .|.+||+++|+.+.+..|||++.|..
T Consensus 200 illDEp~---d~e~~~----~~~~~~~--~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 200 ILVGEMR---DLETIR----LALTAAE--TGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp EEESCCC---SHHHHH----HHHHHHH--TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred EecCCCC---CHHHHH----HHHHHHh--cCCEEEEEEccChHHHHHHHHhhhcC
Confidence 9999999 666544 3333333 26799999999998887888887754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=144.59 Aligned_cols=83 Identities=25% Similarity=0.298 Sum_probs=71.5
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCC
Q 024738 152 LQRPVQTLSGGQKQRVAIAGALAE----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227 (263)
Q Consensus 152 ~~~~~~~LSgGqkqRv~lAral~~----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d 227 (263)
..+++..||||||||++||++|+. +|+++||||||++||+.++..+.+.|+++.+ +.++|++||+...+..||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~---~~~~ivith~~~~~~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK---ESQFIVITLRDVMMANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSCHHHHTTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc---CCEEEEEEecHHHHHhCC
Confidence 456678999999999999999974 4699999999999999999999999998753 358999999988778999
Q ss_pred EEEEE--eCCEE
Q 024738 228 GAFYM--EDGKI 237 (263)
Q Consensus 228 ~v~~l--~~G~i 237 (263)
+++.+ .+|..
T Consensus 135 ~i~~v~~~~g~s 146 (173)
T 3kta_B 135 KIIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCEE
Confidence 99855 46653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-21 Score=177.54 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=92.5
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEE-------cCceE
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG--HVYV-------KRPKS 102 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G--~I~~-------~~~~~ 102 (263)
.+|+++||+++|+++ .+++++||+| +|+|+||||||||+++|+|+..|+.| .+.+ ...++
T Consensus 10 ~~l~~~~l~~~y~~~-----~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVYRK-----SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTTTT-----TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEE
T ss_pred CcEEEEecceeECCE-----EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEE
Confidence 369999999999763 5999999998 99999999999999999999875443 1111 12367
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC---E
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK---V 179 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~---l 179 (263)
+++|.+.....+ ++.+++.++.... .......+.+.++ ..++.+++||++||||++.+|+ +
T Consensus 79 ~v~q~~~~~~~L-tv~Dt~g~~~~~~---~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vl 142 (418)
T 2qag_C 79 VLIKEGGVQLLL-TIVDTPGFGDAVD---NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCC 142 (418)
T ss_dssp CC------CEEE-EEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEE
T ss_pred EEEecCCcccce-eeeechhhhhhcc---chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEE
Confidence 778765432222 5666554432111 1111111222222 1345677889999999999999 9
Q ss_pred EEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 180 LLLDELT-TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 180 lllDEPt-s~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
|++|||| ++||+... +.++.+.. +.+||+|.|..+.
T Consensus 143 L~ldePt~~~L~~~d~----~~lk~L~~---~v~iIlVinK~Dl 179 (418)
T 2qag_C 143 LYFIAPSGHGLKPLDI----EFMKRLHE---KVNIIPLIAKADT 179 (418)
T ss_dssp EEECCC-CCSCCHHHH----HHHHHHTT---TSEEEEEEESTTS
T ss_pred EEEecCcccCCCHHHH----HHHHHHhc---cCcEEEEEEcccC
Confidence 9999999 69999874 34444432 4678888776654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-19 Score=151.87 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=100.2
Q ss_pred cceeceee-EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 52 PILRDCSF-SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 52 ~iL~~vsl-~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
+.|+.+.. -+++|++++|+||||||||||++.+++ .+ .+. +.|+..+.. .....+.+. ....+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~------v~~i~~~~~--~~~~~~~~~----~~~~~~ 71 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKK------VAYVDTEGG--FSPERLVQM----AETRGL 71 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSE------EEEEESSCC--CCHHHHHHH----HHTTTC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCc------EEEEECCCC--CCHHHHHHH----HHhcCC
Confidence 46777776 799999999999999999999999999 22 222 233333321 011112221 111222
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHHH--------HHHHHH
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQ--KQRVAIAGALAEA-CKVLLLDELTTFLDESD--------QFGVIE 199 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq--kqRv~lAral~~~-p~llllDEPts~LD~~~--------~~~l~~ 199 (263)
..+ ++++.+ .+..+|+++ +|+++.+++++.+ |+++|+||||+.+|+.. ...+++
T Consensus 72 ~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~ 136 (220)
T 2cvh_A 72 NPE-------EALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQ 136 (220)
T ss_dssp CHH-------HHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHH
T ss_pred ChH-------HHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHH
Confidence 221 122322 123345554 5688888899986 99999999999999732 344566
Q ss_pred HHHHHHhcCCCcEEEEEccCcc-------------hh-hcCCEEEEEeCC
Q 024738 200 AVKNLLGDSGEVTALWVTHRLE-------------EL-EYADGAFYMEDG 235 (263)
Q Consensus 200 ~l~~l~~~~~~~tiiivtH~~~-------------~~-~~~d~v~~l~~G 235 (263)
.|++++++ .++|||+++|... .+ ..||++++|+..
T Consensus 137 ~L~~l~~~-~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 137 VLLWIARK-HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHH-HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHH-cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 67777654 3689999999875 34 469999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-20 Score=156.28 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=86.3
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEEcC---------ceEEEecCCCCcccccCH----HHHHH
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHVYVKR---------PKSFVFQNPDHQVVMPTV----EADVA 122 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~~---------~~~~v~q~~~~~~~~~tv----~~~~~ 122 (263)
.-..++|++++|+||||||||||+|+|+|+.+| ..|.|.+.+ .++|+||++..+..+ ++ .+++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~-~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM-ISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH-HHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHH-HhcCHHHHHHH
Confidence 346799999999999999999999999999986 688887743 245666654211000 11 11111
Q ss_pred hhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 024738 123 FGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202 (263)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~ 202 (263)
+....++. | +++ ++.++..++++||| ||+.++..+.+.+.
T Consensus 89 ~~~~~yg~-----------------------------~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~ 128 (219)
T 1s96_A 89 VFGNYYGT-----------------------------S---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP 128 (219)
T ss_dssp ETTEEEEE-----------------------------E---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT
T ss_pred HHhccCCC-----------------------------C---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc
Confidence 10000000 0 111 23344457999999 99999998888764
Q ss_pred HHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 203 NLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 203 ~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.+.||+++||+++.+.. |+ +.+| .++++++...
T Consensus 129 ------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 129 ------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp ------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred ------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 25899999999998743 22 5666 5677776543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-21 Score=179.03 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=108.3
Q ss_pred ceeceeeEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCCCc----eEEEEcCceEEEecCCCCcccccCHHHHHHhhcc
Q 024738 53 ILRDCSFSVPS--GQLWMLLGPNGCGKSTLLKVLAGLLKPTN----GHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLG 126 (263)
Q Consensus 53 iL~~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~----G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~ 126 (263)
+.+.|++++.+ |+.++|+||||||||||+|+|+|+++|++ |+|++++... ... ........ .++.+...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~---~~~-~~~~~~~~-~~I~~~~q 231 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG---GDE-QAMQYSDY-PQMALGHQ 231 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS---SCT-TSSCTTTH-HHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC---CCc-ccCChhHH-HHHHHHHH
Confidence 45789999999 99999999999999999999999999999 7776532110 000 00111122 33433211
Q ss_pred CCCCChHHHHHHHHHHHHHcC--CCcccCCCCCCCChHHHHHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHH
Q 024738 127 NLNLTHDEVRSKVAKALDAVG--MSNYLQRPVQTLSGGQKQRVAIAGALA-EACKVLLLDE---LT------TFLDESDQ 194 (263)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~~--l~~~~~~~~~~LSgGqkqRv~lAral~-~~p~llllDE---Pt------s~LD~~~~ 194 (263)
..........+.+- -.+..+..+..+|+|++|+..+++++. .+|+++|||| |+ .++|+..+
T Consensus 232 -------~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r 304 (365)
T 1lw7_A 232 -------RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQR 304 (365)
T ss_dssp -------HHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSH
T ss_pred -------HHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHH
Confidence 00000001111110 011112233456778888888888875 6999999999 65 58999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhH
Q 024738 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 195 ~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
..+.+.|.++.++ .+.+||+++|.-....+++++.++++ ++..++++++
T Consensus 305 ~~l~~~l~~l~~~-~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 305 QQFQQLLKKLLDK-YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp HHHHHHHHHHHHG-GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred HHHHHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 9999999887543 25789999986333345666555543 3334444444
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-20 Score=160.81 Aligned_cols=134 Identities=18% Similarity=0.130 Sum_probs=93.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEEcC---------ceEEEecCCCCcccccCHHHHHHhhcc----
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLA---GLLKPTNGHVYVKR---------PKSFVFQNPDHQVVMPTVEADVAFGLG---- 126 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~---Gl~~p~~G~I~~~~---------~~~~v~q~~~~~~~~~tv~~~~~~~~~---- 126 (263)
++++++|+||||||||||+++|+ |+..|+.|+|.+.+ .+.+++|+....+ ..++.+++...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVP-DHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999 99999999987753 1334556543222 2267777765321
Q ss_pred ----CCCCChHHHHHHHHHHH--HHcC------------CCcccCCCCCCCChHHHHHHHHHHHH-hhCCCEEEEe----
Q 024738 127 ----NLNLTHDEVRSKVAKAL--DAVG------------MSNYLQRPVQTLSGGQKQRVAIAGAL-AEACKVLLLD---- 183 (263)
Q Consensus 127 ----~~~~~~~~~~~~~~~~l--~~~~------------l~~~~~~~~~~LSgGqkqRv~lAral-~~~p~llllD---- 183 (263)
..+..... ..+..+. ..++ +....++++.+||| |+ +|+ +.+|++++||
T Consensus 105 ~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 105 QHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp SCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 01121111 1222222 1223 23345777889999 66 777 9999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 024738 184 ELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 184 EPts~LD~~~~~~l~~~l~~l~~ 206 (263)
|||++||+.++..+.+.+.++.+
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-20 Score=154.52 Aligned_cols=127 Identities=19% Similarity=0.178 Sum_probs=83.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------eEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP-----------KSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~-----------~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
.+++|++++|+||||||||||+|+|+|. |+.|.|.+++. ++|++|.+. ...++.+++.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~---~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ---QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh---hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78899988642 233443321 1125666654421100
Q ss_pred ---CCChHHHHHHHHHHHHHcCCCccc--CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 129 ---NLTHDEVRSKVAKALDAVGMSNYL--QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 129 ---~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
+.. ..++.++..+++..+. +.++..+|+|++||++++|++.++|+++ +|+...+.+++.+..
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 000 0000001111222222 4456789999999999999999999886 688888888877766
Q ss_pred H
Q 024738 204 L 204 (263)
Q Consensus 204 l 204 (263)
+
T Consensus 147 l 147 (191)
T 1zp6_A 147 L 147 (191)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-18 Score=158.39 Aligned_cols=126 Identities=18% Similarity=0.238 Sum_probs=82.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT-NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~-~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+. +..+. ... .+.+ ..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-------~~e~~-~~~---~~~~------v~ 187 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-------PIEYV-FKH---KKSI------VN 187 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-------SCCSC-CCC---SSSE------EE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-------cHhhh-hcc---CceE------EE
Confidence 455554 7899999999999999999999999999998 899965321 10000 000 0000 00
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ 211 (263)
.. .+|++ +..| +.+|+++|..+|++|++|||+ |+.... ..++.. . .|.
T Consensus 188 Q~-----------~~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~-~--~g~ 235 (372)
T 2ewv_A 188 QR-----------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA-E--TGH 235 (372)
T ss_dssp EE-----------EBTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH-T--TTC
T ss_pred ee-----------ecCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH-h--cCC
Confidence 00 12322 2344 469999999999999999999 776543 334432 2 367
Q ss_pred EEEEEccCcchhhcCCEE
Q 024738 212 TALWVTHRLEELEYADGA 229 (263)
Q Consensus 212 tiiivtH~~~~~~~~d~v 229 (263)
+++.++|+.+....+||+
T Consensus 236 ~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 236 LVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp EEEECCCCCSHHHHHHHH
T ss_pred EEEEEECcchHHHHHHHH
Confidence 899999987644455554
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-18 Score=161.39 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=111.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCC---C----CceEEEEcCceEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQL--WMLLGPNGCGKSTLLKVLAGLLK---P----TNGHVYVKRPKSF 103 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~---p----~~G~I~~~~~~~~ 103 (263)
.|++++ +++|++. + |+++||++++|++ ++|+||||||||||+|+|+|+.- + ..|. . ...++|
T Consensus 16 ~l~~~~-~~~y~~~-----~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~-~-~~~i~~ 86 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGV-Q-LQSNTY 86 (427)
T ss_dssp -CCCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSC-E-EEEEEE
T ss_pred eEEEee-EEEECCe-----e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccc-e-EeeEEE
Confidence 467777 8888652 5 9999999999999 99999999999999999999841 1 0111 1 125899
Q ss_pred EecCCCCcccccCHHHHHHhhccCCC---CC--hHHHHHHHHHHHHHc-CCCc----ccCCCC-----------CCCChH
Q 024738 104 VFQNPDHQVVMPTVEADVAFGLGNLN---LT--HDEVRSKVAKALDAV-GMSN----YLQRPV-----------QTLSGG 162 (263)
Q Consensus 104 v~q~~~~~~~~~tv~~~~~~~~~~~~---~~--~~~~~~~~~~~l~~~-~l~~----~~~~~~-----------~~LSgG 162 (263)
++|++.....+ |+.+|+.++....+ +. .+.....+.+++... ++.. ..+.++ ..|+-.
T Consensus 87 v~Q~~~l~~~l-tv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~ 165 (427)
T 2qag_B 87 DLQESNVRLKL-TIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL 165 (427)
T ss_dssp EEEC--CEEEE-EEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH
T ss_pred EeecCcccccc-chhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH
Confidence 99987543222 77777665432110 00 011234455556654 4431 112221 246665
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 163 QKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 163 qkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
. +.++++|..+++++++|||+..|.+.....+.+.+++-.. ..|+.|+.+|.+-
T Consensus 166 D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~d 219 (427)
T 2qag_B 166 D---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTDD 219 (427)
T ss_dssp H---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC---
T ss_pred H---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCCc
Confidence 5 7999999999999999999999999999999999987333 3478899888753
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-18 Score=160.21 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=103.9
Q ss_pred EEEeEEEE---ECCCccccccce---------eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceE
Q 024738 35 ECSNLNYS---ITKKQRKLVPIL---------RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKS 102 (263)
Q Consensus 35 ~~~nl~~~---y~~~~~~~~~iL---------~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~ 102 (263)
++++++|+ |+... .++| +++||++++|++++|+||||||||||+++|+|+++|++|.|++.+..-
T Consensus 137 ~f~~v~f~~~~Y~~~~---~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFE---QELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE 213 (361)
T ss_dssp TTSCCCCSCSCCCHHH---HHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC
T ss_pred CcCccccccccccchh---HHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc
Confidence 77888887 74311 1355 999999999999999999999999999999999999999999975311
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
+-.. ..+..+.+. .. .+.. ..+++++.++-.|+.++..+|+.+++
T Consensus 214 ~~~~---------~~~~~v~~v--~~---q~~~---------------------~~~~~~~t~~~~i~~~l~~~pd~~l~ 258 (361)
T 2gza_A 214 LFLP---------DHPNHVHLF--YP---SEAK---------------------EEENAPVTAATLLRSCLRMKPTRILL 258 (361)
T ss_dssp CCCT---------TCSSEEEEE--CC----------------------------------CCHHHHHHHHTTSCCSEEEE
T ss_pred cCcc---------ccCCEEEEe--ec---Cccc---------------------cccccccCHHHHHHHHHhcCCCEEEE
Confidence 0000 000000000 00 0000 01245556889999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCE
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGK 236 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~ 236 (263)
|||.. ..+.+.+..+.. +..|++.++|..+....+||+..+..+.
T Consensus 259 ~e~r~-------~~~~~~l~~l~~--g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 259 AELRG-------GEAYDFINVAAS--GHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp SCCCS-------THHHHHHHHHHT--TCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred cCchH-------HHHHHHHHHHhc--CCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 99986 234556666532 2347899999976556788887777653
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-20 Score=152.57 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=99.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-------eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP-------KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVR 136 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~-------~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~ 136 (263)
|++++|+||||||||||+|+|++ |.+|.+++++. .++++|.... ....++.+++.+...... .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~------~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESD-ELLALTWKNITDLTVNFL------L 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCH-HHHHHHHHHHHHHHHHHH------H
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccch-hHHHHHHHHHHHHHHHHH------h
Confidence 68999999999999999999997 67898988642 3444443211 011144555433210000 0
Q ss_pred HHHHHHHHHcCCCcccCCCCCCC--ChHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 024738 137 SKVAKALDAVGMSNYLQRPVQTL--SGGQKQRVAIAG------ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS 208 (263)
Q Consensus 137 ~~~~~~l~~~~l~~~~~~~~~~L--SgGqkqRv~lAr------al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~ 208 (263)
.....+++.+. .....+...++ |+||+|++.++. +++.+|+...+|+ ++|+..+.. ++.+..+..
T Consensus 72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-- 144 (189)
T 2bdt_A 72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-- 144 (189)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC--
T ss_pred cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC--
Confidence 00000000000 00000111234 888888888888 8999999888884 899988888 888887643
Q ss_pred CCcEEEEEccC-cchh-hcCCEEEEEeCCEEEEecChhhH
Q 024738 209 GEVTALWVTHR-LEEL-EYADGAFYMEDGKIVMQADGVSI 246 (263)
Q Consensus 209 ~~~tiiivtH~-~~~~-~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
.+.++|.+||. ++.+ +.||+|+ ++|+++.+|+++-+
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 25789999998 9888 4799998 99999999987654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=133.65 Aligned_cols=148 Identities=15% Similarity=0.245 Sum_probs=86.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC--CCCC-----CceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKP-----TNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p-----~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++... .. +....+.+.. ...+...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~-------~~--~~~~~~~~~~----~~~g~~~ 86 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE-------GT--FRPERLLAVA----ERYGLSG 86 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS-------SC--CCHHHHHHHH----HHTTCCH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC-------CC--cCHHHHHHHH----HHcCCCH
Confidence 589999999999999999999999999 5665 4555554432 10 0000111111 1112222
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH-------H-----HHHH
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR-VAIAGALA--EACKVLLLDELTTFLDES-------D-----QFGV 197 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR-v~lAral~--~~p~llllDEPts~LD~~-------~-----~~~l 197 (263)
++ +++.+.+ ...++..+... +.-+..++ .+|+++++|||++.+|+. . ...+
T Consensus 87 ~~-------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 87 SD-------VLDNVAY-------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp HH-------HHHTEEE-------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred HH-------HhhCeEE-------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 11 2222211 12345555433 22233333 589999999999999985 3 3456
Q ss_pred HHHHHHHHhcCCCcEEEEEccCcchh-------------------h-cCCEEEEEeCC
Q 024738 198 IEAVKNLLGDSGEVTALWVTHRLEEL-------------------E-YADGAFYMEDG 235 (263)
Q Consensus 198 ~~~l~~l~~~~~~~tiiivtH~~~~~-------------------~-~~d~v~~l~~G 235 (263)
+..|.+++++ .|+|||+++|..... + .||.+++|+.+
T Consensus 153 ~~~l~~~~~~-~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADE-FGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHH-HCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHH-cCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 6666666654 368999999966532 2 69999999865
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-20 Score=169.02 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=112.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++|++++|+.. .+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+
T Consensus 29 ~ie~~~~~~~~~~~-----~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~ 103 (337)
T 2qm8_A 29 LAESRRADHRAAVR-----DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSIL 103 (337)
T ss_dssp HHTCSSHHHHHHHH-----HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSS
T ss_pred HHeeCCcccccChH-----HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchH
Confidence 58899999998642 589999999999999999999999999999999999999999998742
Q ss_pred ----ceEEEecCCCCcccc-c----------CHHHHHH-h----------------------------hccCCCCC-hHH
Q 024738 100 ----PKSFVFQNPDHQVVM-P----------TVEADVA-F----------------------------GLGNLNLT-HDE 134 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~-~----------tv~~~~~-~----------------------------~~~~~~~~-~~~ 134 (263)
.+++++|++..+... + ++.+.+. + .+...... ..+
T Consensus 104 ~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~ 183 (337)
T 2qm8_A 104 GDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDE 183 (337)
T ss_dssp CCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC---
T ss_pred HHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCccc
Confidence 257788876543210 0 1122110 0 00000000 011
Q ss_pred H---HHHHHHHHHHcCCCcccCC-CCCCCChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024738 135 V---RSKVAKALDAVGMSNYLQR-PVQTLSGGQKQRVAIAGALAE------ACKVLLLDELTTFLDESDQFGVIEAVKNL 204 (263)
Q Consensus 135 ~---~~~~~~~l~~~~l~~~~~~-~~~~LSgGqkqRv~lAral~~------~p~llllDEPts~LD~~~~~~l~~~l~~l 204 (263)
. ++.+.+....+.+ ++.|. ....+|+|++|++..|++++. .|++++ +|++|..+..++++.|.++
T Consensus 184 ~~~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 184 LQGIKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp ---CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0 0111122222233 33442 335689999999999999987 688876 9999999999999999886
Q ss_pred Hh
Q 024738 205 LG 206 (263)
Q Consensus 205 ~~ 206 (263)
..
T Consensus 259 ~~ 260 (337)
T 2qm8_A 259 RS 260 (337)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.66 E-value=8.4e-17 Score=147.13 Aligned_cols=113 Identities=21% Similarity=0.236 Sum_probs=86.3
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEc-C---------ceEEEecCCCCcccccCHHHHH
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK-PTNGHVYVK-R---------PKSFVFQNPDHQVVMPTVEADV 121 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~-~---------~~~~v~q~~~~~~~~~tv~~~~ 121 (263)
-++++++. .+|++++|+||||||||||+|+|+|+.. |+.|+|.+. + .+++++|++.. +..+++.++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l-~dtpgv~e~- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDV-IDSPGVREF- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEE-EECHHHHTC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEe-cCcccHHHh-
Confidence 46777775 4899999999999999999999999999 999999875 2 47889987642 223366652
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 122 AFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
+ ......++..+.+.++++.+++..+.++++.+|| ||+||++||+++
T Consensus 282 --~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred --h--hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 2 2234555666777888999999999999999999 999999999864
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=142.89 Aligned_cols=77 Identities=30% Similarity=0.406 Sum_probs=67.9
Q ss_pred CCCCCCChHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcC
Q 024738 154 RPVQTLSGGQKQRV------AIAGALAEA-CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYA 226 (263)
Q Consensus 154 ~~~~~LSgGqkqRv------~lAral~~~-p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~ 226 (263)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.|.++. . +.+||++||+++....|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~--~~~vi~~th~~~~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S--IPQMIIITHHRELEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S--CSEEEEEESCGGGGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c--CCeEEEEEChHHHHhhC
Confidence 56679999999988 567889999 99999999999999999999999999863 2 35899999998765789
Q ss_pred CEEEEEe
Q 024738 227 DGAFYME 233 (263)
Q Consensus 227 d~v~~l~ 233 (263)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=128.02 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=76.0
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
+|.+++|+.++|+||||||||||+++|++.+.|.+|.. +.| . +..+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----~~~----------~-~~~~~~~~-------------- 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----GYF----------F-DTKDLIFR-------------- 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----CCE----------E-EHHHHHHH--------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----EEE----------E-EHHHHHHH--------------
Confidence 46778899999999999999999999999987766631 111 1 22222111
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT-FLDESDQFGVIEAVKNLLGDSGEVTALWV 216 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts-~LD~~~~~~l~~~l~~l~~~~~~~tiiiv 216 (263)
+......-... -+...+.+|++|++|||++ ++|+..+..+.+++.+... .++++|++
T Consensus 82 -~~~~~~~~~~~-------------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~--~~~~ii~t 139 (180)
T 3ec2_A 82 -LKHLMDEGKDT-------------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN--NLKSTIIT 139 (180)
T ss_dssp -HHHHHHHTCCS-------------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH--TTCEEEEE
T ss_pred -HHHHhcCchHH-------------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH--cCCCEEEE
Confidence 10111110000 0112234999999999995 9999999999999988754 35799999
Q ss_pred ccCcc
Q 024738 217 THRLE 221 (263)
Q Consensus 217 tH~~~ 221 (263)
||...
T Consensus 140 sn~~~ 144 (180)
T 3ec2_A 140 TNYSL 144 (180)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-17 Score=152.58 Aligned_cols=146 Identities=20% Similarity=0.175 Sum_probs=94.8
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEEcC-ceEEEecCCCCcccccCHHHHH
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL-----------KPTNGHVYVKR-PKSFVFQNPDHQVVMPTVEADV 121 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-----------~p~~G~I~~~~-~~~~v~q~~~~~~~~~tv~~~~ 121 (263)
-++++|+++.|+.++|+|+|||||||||++|+|.. .|+.|.|.+++ ..-.+.+.|.... ...
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~---~a~--- 220 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE---GAS--- 220 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC---CGG---
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEecccccc---chh---
Confidence 47999999999999999999999999999999983 44455555443 2223333332110 000
Q ss_pred HhhccCCCCChHHHH--HHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 024738 122 AFGLGNLNLTHDEVR--SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIE 199 (263)
Q Consensus 122 ~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~ 199 (263)
....+.....+ +++..++..+++. ++++.+||+||+|++++|++|+..|.+|++ |.+|.... ..++
T Consensus 221 ----~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~ 288 (416)
T 1udx_A 221 ----EGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVK 288 (416)
T ss_dssp ----GSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHH
T ss_pred ----hhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHH
Confidence 01111111110 1122233334444 567789999999999999999999999999 99999876 4455
Q ss_pred HHHHHHhcCCCcEEEEEcc
Q 024738 200 AVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 200 ~l~~l~~~~~~~tiiivtH 218 (263)
.+.+..++ .+.+++++|.
T Consensus 289 ~l~~~l~~-~g~~vi~iSA 306 (416)
T 1udx_A 289 ALADALAR-EGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHT-TTSCEEECCT
T ss_pred HHHHHHHh-cCCeEEEEEC
Confidence 55554433 3566666653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-18 Score=140.20 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=64.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--------eEEEe
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--------KSFVF 105 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--------~~~v~ 105 (263)
++.++++++|++ ..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.+++. ..+++
T Consensus 8 ~~~~~~~~~~g~-----~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~ 81 (158)
T 1htw_A 8 IPDEFSMLRFGK-----KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMI 81 (158)
T ss_dssp ECSHHHHHHHHH-----HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEE
T ss_pred cCCHHHHHHHHH-----HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcce
Confidence 444566777764 25899999999999999999999999999999999999 99999987642 12678
Q ss_pred cCCCCcccccCHHHHHH
Q 024738 106 QNPDHQVVMPTVEADVA 122 (263)
Q Consensus 106 q~~~~~~~~~tv~~~~~ 122 (263)
|++..+ .+ |+.+|+.
T Consensus 82 q~~~l~-~l-tv~e~l~ 96 (158)
T 1htw_A 82 YHFDLY-RL-ADPEELE 96 (158)
T ss_dssp EEEECT-TC-SCTTHHH
T ss_pred eccccc-cC-CcHHHHH
Confidence 876543 33 7777764
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-19 Score=163.70 Aligned_cols=137 Identities=22% Similarity=0.306 Sum_probs=93.6
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------------
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------- 99 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------- 99 (263)
++++++.+.|+. ..+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+
T Consensus 144 ~~l~~Lg~~~~~-----~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~ 216 (418)
T 1p9r_A 144 LDLHSLGMTAHN-----HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQ 216 (418)
T ss_dssp CCGGGSCCCHHH-----HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEE
T ss_pred CCHHHcCCCHHH-----HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEE
Confidence 455555555532 2367777 53 89999999999999999999999999999999998742
Q ss_pred ---ceEEEe---------cCCCCcccc-----cCHHHHHHhhccCC----CCChHHHHHHHHHHHHHcCCCcccCCCCCC
Q 024738 100 ---PKSFVF---------QNPDHQVVM-----PTVEADVAFGLGNL----NLTHDEVRSKVAKALDAVGMSNYLQRPVQT 158 (263)
Q Consensus 100 ---~~~~v~---------q~~~~~~~~-----~tv~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 158 (263)
.+++.| |+|...... .|+.+++.++.... ........+ +.+.+..+++.... .+.+
T Consensus 217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~ 293 (418)
T 1p9r_A 217 VNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSS 293 (418)
T ss_dssp CBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHH
T ss_pred EccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHH
Confidence 123444 777542111 26777776542110 000111112 22356778888654 6789
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEE
Q 024738 159 LSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 159 LSgGqkqRv~lAral~~~p~llll 182 (263)
|||||+|| |||+|+.+|+++.-
T Consensus 294 LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 294 LLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHH--hhhhhcCCCCccCC
Confidence 99999999 99999999998763
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-17 Score=145.54 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=97.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCCCcccccCHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPDHQVVMPTVEAD 120 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~~~~~~~tv~~~ 120 (263)
..++|++++|+||||||||||+++|+|+++|++|+|.+.+ .+.+++|.....+. .++.+|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~-~~v~e~ 203 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPA-AVAYDA 203 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHH-HHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHH-HHHHHH
Confidence 3478999999999999999999999999999999998853 13477776543222 267777
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 024738 121 VAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200 (263)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~ 200 (263)
+.++.... .. . -+++..|+.......+ .+.-.++|++..++.+++||.++. . .+.+.
T Consensus 204 l~~~~~~~-~d------~--vliDtaG~~~~~~~l~-------~eL~~i~ral~~de~llvLDa~t~-~------~~~~~ 260 (328)
T 3e70_C 204 IQHAKARG-ID------V--VLIDTAGRSETNRNLM-------DEMKKIARVTKPNLVIFVGDALAG-N------AIVEQ 260 (328)
T ss_dssp HHHHHHHT-CS------E--EEEEECCSCCTTTCHH-------HHHHHHHHHHCCSEEEEEEEGGGT-T------HHHHH
T ss_pred HHHHHhcc-ch------h--hHHhhccchhHHHHHH-------HHHHHHHHHhcCCCCEEEEecHHH-H------HHHHH
Confidence 76542100 00 0 0122223322222222 333348999998888889986554 3 34445
Q ss_pred HHHHHhcCCCcEEEEEccCcchh----------hcCCEEEEEeCCEEE
Q 024738 201 VKNLLGDSGEVTALWVTHRLEEL----------EYADGAFYMEDGKIV 238 (263)
Q Consensus 201 l~~l~~~~~~~tiiivtH~~~~~----------~~~d~v~~l~~G~i~ 238 (263)
++.+.+. .+.|+|++||.-+.. ...-.|.++..|+-+
T Consensus 261 ~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 ARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 5555432 368999999954321 134678888888754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-19 Score=160.64 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=85.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEEcCceEEEecC-CC-------------CcccccCHHHHH-
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL--------KPTNGHVYVKRPKSFVFQN-PD-------------HQVVMPTVEADV- 121 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~--------~p~~G~I~~~~~~~~v~q~-~~-------------~~~~~~tv~~~~- 121 (263)
++++|+|+||||||||+|.|+|+. .|+.|+|.+++.. +... .. ...+...+..-+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~--l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~ 82 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL--IGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE--ECTTSCEEEEETTSCEEECTTSCHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH--HhCCCCCEEEECCCceEEcccHHHHHHHHHHHh
Confidence 589999999999999999999997 7899999887531 1110 00 000000111110
Q ss_pred -----Hhh-----ccCCCCC-hHHHHHHH---HH---------HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCC
Q 024738 122 -----AFG-----LGNLNLT-HDEVRSKV---AK---------ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACK 178 (263)
Q Consensus 122 -----~~~-----~~~~~~~-~~~~~~~~---~~---------~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 178 (263)
.+. ....++. .......+ .+ ++..+++....++.. +||+||+||+..+++++.+|+
T Consensus 83 ~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTT
T ss_pred HHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcc
Confidence 000 0011111 11111111 11 122234444333333 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
++ ||| ..+.+.|+++. .+.+|+++||+...+
T Consensus 162 l~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDL 192 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCG
T ss_pred cC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCH
Confidence 87 999 66778888763 357999999965443
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-17 Score=154.19 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=92.4
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------------ceEEEecCCCCcccc
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------------PKSFVFQNPDHQVVM 114 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------------~~~~v~q~~~~~~~~ 114 (263)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ .++|++|+..... .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p-~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS-A 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH-H
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH-H
Confidence 4689999999999999999999999999999999999999999842 2578888764322 2
Q ss_pred cCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh-hCC-CEEEEeCCCCCCCHH
Q 024738 115 PTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA-EAC-KVLLLDELTTFLDES 192 (263)
Q Consensus 115 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-~~p-~llllDEPts~LD~~ 192 (263)
.++.+|+.++... +.+ . -+++..|........+. -.+|++.+++++. ..| ++||...|++|.|..
T Consensus 362 ~tV~e~l~~a~~~-~~D------v--VLIDTaGrl~~~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~al 428 (503)
T 2yhs_A 362 SVIFDAIQAAKAR-NID------V--LIADTAGRLQNKSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV 428 (503)
T ss_dssp HHHHHHHHHHHHT-TCS------E--EEECCCCSCCCHHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH
T ss_pred HHHHHHHHHHHhc-CCC------E--EEEeCCCccchhhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHHH
Confidence 3788887765321 110 0 01111222111000111 2247888888764 456 456666688886654
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
. .++.+... -+.|.|++||
T Consensus 429 ~------~ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 429 S------QAKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp H------HHHHHHHH-TCCSEEEEEC
T ss_pred H------HHHHHHhh-cCCCEEEEEc
Confidence 2 23333221 2578899999
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-17 Score=144.80 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=83.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhc------cCCCCChHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGL------GNLNLTHDEV 135 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~------~~~~~~~~~~ 135 (263)
.++.+++|+|++|||||||.+.|++++.+.... ...+.+|+|+.. .+..+..+|+.++. ...+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f--~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d 103 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDF--YLTHEDQLKLNEQFKNNKLLQGRGLPGTHD 103 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGG--BCCHHHHHHHHHHTTTCGGGSSSCSTTSBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccc--cCChHHHHHHhccccccchhhhccCcchhH
Confidence 568899999999999999999999998764111 123445589863 22337778876642 1111111111
Q ss_pred HHHHHHHHHHcCCC--------cccCCCCCCCChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q 024738 136 RSKVAKALDAVGMS--------NYLQRPVQTLSGGQKQRVAIA--GALAEACKVLLLDELTTFLDES 192 (263)
Q Consensus 136 ~~~~~~~l~~~~l~--------~~~~~~~~~LSgGqkqRv~lA--ral~~~p~llllDEPts~LD~~ 192 (263)
...+.+.++.+.-. -....+...+||||+||+++| +++ +|+|||+||||+++|+.
T Consensus 104 ~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 104 MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 23445556655322 123455679999999999997 555 99999999999999985
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-15 Score=133.26 Aligned_cols=136 Identities=14% Similarity=0.208 Sum_probs=78.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC-CCCCCceEEEEcCc-----------eEEEecCCCCcccccCHHHHHHhhccCCCC-Ch
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG-LLKPTNGHVYVKRP-----------KSFVFQNPDHQVVMPTVEADVAFGLGNLNL-TH 132 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G-l~~p~~G~I~~~~~-----------~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~-~~ 132 (263)
.+.|.||||+|||||+++++| +..|+.|.+.+++. +++++|.+.... . ....+. ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~ 106 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI-T----------PSDMGNNDR 106 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEE-C----------CC----CCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEe-c----------HhhcCCcch
Confidence 489999999999999999999 88999999987642 344444331100 0 000011 11
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
...++.+.++.+..++.... .||| +..+|+++|+|||++ ||+..+..+++.+.+.. .+.+
T Consensus 107 ~~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~ 166 (354)
T 1sxj_E 107 IVIQELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIR 166 (354)
T ss_dssp HHHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEE
T ss_pred HHHHHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCE
Confidence 11222233332323333222 5676 778999999999999 99999999999998863 2579
Q ss_pred EEEEccCcchh-h-cCCEEEEE
Q 024738 213 ALWVTHRLEEL-E-YADGAFYM 232 (263)
Q Consensus 213 iiivtH~~~~~-~-~~d~v~~l 232 (263)
+|++||+++.+ . +.+|+..+
T Consensus 167 ~Il~t~~~~~l~~~l~sR~~~~ 188 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQCLLI 188 (354)
T ss_dssp EEEEESCSCSSCHHHHTTSEEE
T ss_pred EEEEeCCHHHHHHHHHhhceEE
Confidence 99999998754 2 34444333
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=134.78 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=86.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHH--HHhCCCCCCce-----EEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCCh
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLK--VLAGLLKPTNG-----HVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTH 132 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk--~i~Gl~~p~~G-----~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~ 132 (263)
-|++|++++|+||||||||||++ ++.++.+++.| .++++.. .. +....+.. + ....++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E-------~~--~~~~rl~~-~---a~~~gl~~ 240 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE-------GT--FRPVRLVS-I---AQRFGLDP 240 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS-------SC--CCHHHHHH-H---HHHTTCCH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC-------Cc--cCHHHHHH-H---HHHcCCCh
Confidence 68999999999999999999999 45677776544 4444321 10 00001111 0 11112221
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCChHHH--HHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HH
Q 024738 133 DEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK--QRVAIAGALA--EACKVLLLDELTTFLDESDQ------------FG 196 (263)
Q Consensus 133 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk--qRv~lAral~--~~p~llllDEPts~LD~~~~------------~~ 196 (263)
+ .+++.+-+ .....++. +.+.-++.++ .+|+++++|||++.+|+... .+
T Consensus 241 ~-------~vleni~~--------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~ 305 (400)
T 3lda_A 241 D-------DALNNVAY--------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAK 305 (400)
T ss_dssp H-------HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHH
T ss_pred H-------hHhhcEEE--------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHH
Confidence 1 12222111 11122333 3333333332 57999999999999997533 56
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCc-------------------chhh-cCCEEEEEeCCE
Q 024738 197 VIEAVKNLLGDSGEVTALWVTHRL-------------------EELE-YADGAFYMEDGK 236 (263)
Q Consensus 197 l~~~l~~l~~~~~~~tiiivtH~~-------------------~~~~-~~d~v~~l~~G~ 236 (263)
+++.|++++++ .++|||+++|.. ..++ .+|.+++|++++
T Consensus 306 il~~L~~lake-~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 306 FMRALQRLADQ-FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHH-HCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHH-cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 77888888764 368999999982 1234 589999998763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-16 Score=142.64 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=81.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---cC-------------ceEEEecCCCCcc----cccCHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---KR-------------PKSFVFQNPDHQV----VMPTVEA 119 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---~~-------------~~~~v~q~~~~~~----~~~tv~~ 119 (263)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +| .+||++|.|.... ...|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999988 33 3699999986431 11267 7
Q ss_pred HH--Hhh----c--cCCC-CChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHH
Q 024738 120 DV--AFG----L--GNLN-LTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 120 ~~--~~~----~--~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAr 171 (263)
|+ .|+ + ...+ ....+...++.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 343 1 1222 122233456888999999986 788999999998888899986
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-15 Score=117.56 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=69.6
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
.+|+++ +|+.++|+||||||||||++++++...+ +|. ...|+..... .. .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-----~~~~~~~~~~---~~-~--------------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-----NAAYIDAASM---PL-T--------------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-----CEEEEETTTS---CC-C---------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-----cEEEEcHHHh---hH-H---------------
Confidence 356666 8999999999999999999999999876 451 1233333210 00 0
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ 211 (263)
+++.+|++|++|||++ ++...++.+++++.++..+ |.
T Consensus 79 ----------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~--g~ 115 (149)
T 2kjq_A 79 ----------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS--GK 115 (149)
T ss_dssp ----------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH--TC
T ss_pred ----------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc--CC
Confidence 2356899999999998 6665688899999887643 45
Q ss_pred E-EEEEccC
Q 024738 212 T-ALWVTHR 219 (263)
Q Consensus 212 t-iiivtH~ 219 (263)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 7 8888884
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-18 Score=160.31 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=102.0
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc----------eEEEecCCCCcccccCHHHHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------KSFVFQNPDHQVVMPTVEADV 121 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------~~~v~q~~~~~~~~~tv~~~~ 121 (263)
.++++++|.+++|++++|+|||||||||||++|+|+++|++|.|++.+. +++..|... .....+..+.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~-~~~~~~~~~~l 326 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM-GEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS-SSCCBCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc-ccCCcCHHHHH
Confidence 4789999999999999999999999999999999999999999998653 233443321 00111444444
Q ss_pred HhhccCC-------CCChHHHHHH------------------HHHHHHHc-----CCCc----ccC---CCCCCCChHHH
Q 024738 122 AFGLGNL-------NLTHDEVRSK------------------VAKALDAV-----GMSN----YLQ---RPVQTLSGGQK 164 (263)
Q Consensus 122 ~~~~~~~-------~~~~~~~~~~------------------~~~~l~~~-----~l~~----~~~---~~~~~LSgGqk 164 (263)
...+... .....+.... +.++++++ ++.. .++ .....+|+||+
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 3222110 1111111111 12223332 2221 111 22346899999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEE--EccCcchhh-cCC
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW--VTHRLEELE-YAD 227 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiii--vtH~~~~~~-~~d 227 (263)
||.++|. + | ++|||+.....+++.+.++.. .+.|+++ +||+++++. .|+
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~--~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP--KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET--TTTEEEECSCCTHHHHHHHHHT
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc--cCCEEEEcccHHHHHHHHHHcC
Confidence 9987652 2 7 999999888777777766632 3578875 999999874 564
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-18 Score=144.38 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=81.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC-------------CCceEEEEcCceEEEecCCCC---------cccccCHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK-------------PTNGHVYVKRPKSFVFQNPDH---------QVVMPTVEA 119 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-------------p~~G~I~~~~~~~~v~q~~~~---------~~~~~tv~~ 119 (263)
++|++++|+||||||||||+++|+|+++ |..|++ ++ +.|.+++... +.+..++..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g-~~~~~~~~~~~~~~i~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DG-KDYYFVTREMMQRDIAAGDFIEHAEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BT-TTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CC-ceEEEccHHHHHHHHHcCCCEeeeeecC
Confidence 5799999999999999999999999875 556652 22 2233332110 000001111
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH---HHHH-HHhhCCCEEEEeCCCCCCCHHHHH
Q 024738 120 DVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV---AIAG-ALAEACKVLLLDELTTFLDESDQF 195 (263)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv---~lAr-al~~~p~llllDEPts~LD~~~~~ 195 (263)
|+ ++.+.+ .+.++++.-.. ...+.. -.|-++.. ..|+ +++.+|++++|||||+++|..+.+
T Consensus 79 n~------~g~~~~----~i~~~~~~~~~-~~~~~~----~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 79 NL------YGTSKE----AVRAVQAMNRI-CVLDVD----LQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp EE------EEEEHH----HHHHHHHTTCE-EEEECC----HHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred cc------CCCCHH----HHHHHHHcCCc-EEEECC----HHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 11 112222 23333432110 000000 01111110 1456 788899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 196 GVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 196 ~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
.+.+.|.+...+ +.++| .. ..+|+++++++
T Consensus 144 ~i~~~l~~~~~~------~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 144 SLAKRLAAARTD------MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHH------TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHH------HHHhh--cc-CCceEEEECCC
Confidence 999888876432 23456 22 57899888764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-17 Score=148.14 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=108.4
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEEc---
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSG-------QLWMLLGPNGCGKSTLLKVLAGLL----KPTNGHVYVK--- 98 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~G-------e~~~l~G~NGsGKSTLlk~i~Gl~----~p~~G~I~~~--- 98 (263)
+++.++++..|++. .+++++++.+++| +.++|+||||||||||+++|+|.+ .+++|.+...
T Consensus 18 ~lr~~~l~~~~g~~-----~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 18 FLRPKSLDEFIGQE-----NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp TTSCSSGGGCCSCH-----HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred HcCCccHHHccCcH-----HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 45666777777653 4899999999887 899999999999999999999988 6777776532
Q ss_pred ----------CceEEEecCCCCcccccCHHHHHHhhccCCCCC----hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHH
Q 024738 99 ----------RPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT----HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164 (263)
Q Consensus 99 ----------~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 164 (263)
..+.+++|... ...++.+++...+...... .....+.+...+..+++.. ...++..||+|++
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~---l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~ 168 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHR---LNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLR 168 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGG---CCHHHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHH
T ss_pred HHHHHHHccCCCEEEEcchhh---cCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHH
Confidence 34788888653 2236777664333222211 1122233444556666654 5677889999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
||+.++ .+||+....++.++|++.++.. + ++|+.+.+.
T Consensus 169 sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~-~-----~~~~~~~~~ 206 (334)
T 1in4_A 169 SRFGII----------------LELDFYTVKELKEIIKRAASLM-D-----VEIEDAAAE 206 (334)
T ss_dssp TTCSEE----------------EECCCCCHHHHHHHHHHHHHHT-T-----CCBCHHHHH
T ss_pred HhcCce----------------eeCCCCCHHHHHHHHHHHHHHc-C-----CCcCHHHHH
Confidence 998655 7788888888999998876532 3 357766553
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-16 Score=130.49 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=77.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEcCceEEEecCCCCcccccCHHH-HHH----hhccC----CCCCh
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPT---NGHVYVKRPKSFVFQNPDHQVVMPTVEA-DVA----FGLGN----LNLTH 132 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~~~~~~v~q~~~~~~~~~tv~~-~~~----~~~~~----~~~~~ 132 (263)
++++|+|+||||||||+++|+|+++|+ .|+|.+++.--.-+..+ ...+.+. .+. +.... .....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~----~~d~~r~~~ig~~~~~~~~~~~~~i~~~~ 78 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKE----GKDSWKIYNSGADVVIASPVKLAFIRRVS 78 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----------------CHHHHHHHHTCEEEEECSSEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCcc----chhHHHHHhcCCceEEECCCcEEEEecCC
Confidence 589999999999999999999999998 89998865310100000 0001221 121 00000 00001
Q ss_pred HHHHHHHHHHHHH-c-CCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE-------EEeCCCC---CCCHHHHHHHHHH
Q 024738 133 DEVRSKVAKALDA-V-GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL-------LLDELTT---FLDESDQFGVIEA 200 (263)
Q Consensus 133 ~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll-------llDEPts---~LD~~~~~~l~~~ 200 (263)
.+....+.++++. + +++..... .|||||+||++||||++.+|++. +=|.|.. -+|....+.+.+.
T Consensus 79 ~~~~a~l~~~i~~~l~g~dt~i~E---glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~ 155 (171)
T 2f1r_A 79 EEEGNDLDWIYERYLSDYDLVITE---GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEF 155 (171)
T ss_dssp HHHHTCHHHHHHHHTTTCSEEEEE---SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHH
T ss_pred hhhhhCHHHHHHhhCCCCCEEEEC---CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHH
Confidence 1111134455554 4 45433322 39999999999999999999873 2355532 2344455677777
Q ss_pred HHHHHhc
Q 024738 201 VKNLLGD 207 (263)
Q Consensus 201 l~~l~~~ 207 (263)
+.+...+
T Consensus 156 i~~~~~~ 162 (171)
T 2f1r_A 156 ILSLLRE 162 (171)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 7666544
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-16 Score=133.36 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=89.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC----ChHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL----THDEVR 136 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~----~~~~~~ 136 (263)
.++|++++|+||||||||||+++|+|+++|+ | ...++++++.. .+..+..+++... ...+. ......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGF--HLDNRLLEPRGLL-PRKGAPETFDFEGFQ 89 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGG--BCCHHHHGGGTCG-GGTTSGGGBCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCC--cCCHHHHHHhccc-ccCCCCchhhHHHHH
Confidence 5789999999999999999999999999875 4 23566666542 1111222222110 01111 111112
Q ss_pred HHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEE
Q 024738 137 SKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIA-GALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215 (263)
Q Consensus 137 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA-ral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiii 215 (263)
+.+..+-..-.+.-........+|+||+||+++| ++++.++.++++|||.. ..+.+.. -.+++
T Consensus 90 ~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~-----d~~i~ 153 (208)
T 3c8u_A 90 RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIW-----DVSIR 153 (208)
T ss_dssp HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTC-----SEEEE
T ss_pred HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhc-----CEEEE
Confidence 2222221111122111223346799999999998 78888888888888731 1122221 26788
Q ss_pred EccCcch-hh-cCCEEEEEeCCEEEEecChhhHHhh
Q 024738 216 VTHRLEE-LE-YADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 216 vtH~~~~-~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
++++.+. +. .+.|. +..|. +.+++...
T Consensus 154 vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 154 LEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp ECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred EeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 9998886 33 45552 34453 44555443
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-16 Score=142.28 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=54.8
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEE-------------------eCCCEEEEECCCCCcHHHHHHHHhCCCC--C
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSV-------------------PSGQLWMLLGPNGCGKSTLLKVLAGLLK--P 90 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i-------------------~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p 90 (263)
.+|+++||++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |
T Consensus 36 ~~i~~~~v~~~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp TTCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred cccchHhHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 3699999999994 4899999988 8999999999999999999999999988 9
Q ss_pred CceEEEE
Q 024738 91 TNGHVYV 97 (263)
Q Consensus 91 ~~G~I~~ 97 (263)
++|+|.+
T Consensus 109 ~~G~i~v 115 (308)
T 1sq5_A 109 EHRRVEL 115 (308)
T ss_dssp TCCCEEE
T ss_pred CCCeEEE
Confidence 9999988
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-18 Score=145.31 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=65.7
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh-CCC------------CCCceEEEEcCceEEEecCCCCcccccCHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA-GLL------------KPTNGHVYVKRPKSFVFQNPDHQVVMPTVE 118 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~-Gl~------------~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~ 118 (263)
+..+++||++++|++++|+||||||||||+++|+ |++ +|..|++ + .++|.++++..+... +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~-g~~~~~~~~~~~~~~-~~~ 90 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--E-GKDYYFVDREEFLRL-CSN 90 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--B-TTTBEECCHHHHHHH-HHT
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--C-CCeEEEecHHHhhhh-hhc
Confidence 4679999999999999999999999999999999 998 4555543 1 233555543211000 111
Q ss_pred HHHHhhc----cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHH-HHH-HHHhhCCCEEEEeCCCCCCCHH
Q 024738 119 ADVAFGL----GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV-AIA-GALAEACKVLLLDELTTFLDES 192 (263)
Q Consensus 119 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv-~lA-ral~~~p~llllDEPts~LD~~ 192 (263)
+++.... ..++...+ .+.++++. +-.-.++-.+. -....++++ .-+ .+++..|+..+++|++.+.|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~----~i~~~~~~-~~~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~ 164 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRK----NLEDNVDK-GVSTLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRAD 164 (231)
T ss_dssp TCEEEEEEETTEEEEEECT----THHHHHHH-TCEEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC-------
T ss_pred CceehhhhhccccCCCCHH----HHHHHHHc-CCeEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCC
Confidence 1111000 00111111 12233333 11111111000 011113332 111 2345677788889999999887
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEEccCcchh-hcCCEEE
Q 024738 193 DQFGVIEAVKNLLGD---SGEVTALWVTHRLEEL-EYADGAF 230 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~---~~~~tiiivtH~~~~~-~~~d~v~ 230 (263)
+.+.+.+.|.....+ .....+++++|+++.+ +.+++++
T Consensus 165 ~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 165 DSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp -------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 777777666543221 1124667777777664 3344443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.7e-17 Score=148.47 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=104.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEEcCc-----------------eEEEecCCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAG------------LLKPTNGHVYVKRP-----------------KSFVFQNPDH 110 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~G------------l~~p~~G~I~~~~~-----------------~~~v~q~~~~ 110 (263)
.+++|..++|+|+||||||||+|+|+| .+.|+.|.|.+.+. ..++.+.+..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 66799999998751 2345555442
Q ss_pred cccccCHHHHHHhhccCCCCChHHHHHHH---HHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCC
Q 024738 111 QVVMPTVEADVAFGLGNLNLTHDEVRSKV---AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEAC--KVLLLDEL 185 (263)
Q Consensus 111 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p--~llllDEP 185 (263)
.... +..+++ .. .....+ ..++..++.. -+..+..+|+++ +| +++++|||
T Consensus 96 ~~~~-s~~e~L---------~~-~fl~~ir~~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGA-STGVGL---------GN-AFLSHVRAVDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCC-CSSSSS---------CH-HHHHHHTTCSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCC-cHHHHH---------HH-HHHHHHHHHHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhchhh
Confidence 2211 211111 00 000000 0011111221 134455577664 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-HhcCCCcEEEEEccCcchh-hcCCEEE-EEeCC-EEEEecCh
Q 024738 186 TTFLDESDQFGVIEAVKNL-LGDSGEVTALWVTHRLEEL-EYADGAF-YMEDG-KIVMQADG 243 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l-~~~~~~~tiiivtH~~~~~-~~~d~v~-~l~~G-~i~~~g~~ 243 (263)
+.++|+....+.++.+... .+ .|.|++ +|....+ +.|+++. +|.+| +++..++.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~--~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSR--GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC--SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHh--cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999999886 43 355653 9999887 5799999 99999 88766543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-13 Score=123.13 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=75.0
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHH
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 135 (263)
.++|...+|++++|+|||||||||+++.|++.+.+..|+|.+. ..+.. -+...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv------~~D~~----r~~a~----------------- 148 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA------AADTF----RAAAI----------------- 148 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE------EECTT----CHHHH-----------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE------ccccc----cHHHH-----------------
Confidence 3566678999999999999999999999999999888877653 33321 11111
Q ss_pred HHHHHHHHHHcCCCcccCCCCCCCChHHHHHH---HHHHHHhhCCCEEEEeCCCC
Q 024738 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRV---AIAGALAEACKVLLLDELTT 187 (263)
Q Consensus 136 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv---~lAral~~~p~llllDEPts 187 (263)
+.+..+++.+++... ..+|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 149 -eqL~~~~~~~gl~~~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -EQLKIWGERVGATVI-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -HHHHHHHHHHTCEEE-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -HHHHHHHHHcCCcEE-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 223345666677532 35689999999 99999999999999999975
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-17 Score=144.06 Aligned_cols=132 Identities=17% Similarity=0.272 Sum_probs=84.8
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-------------eEEEecCCCCcccccCHH
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP-------------KSFVFQNPDHQVVMPTVE 118 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~-------------~~~v~q~~~~~~~~~tv~ 118 (263)
.++++++|.+++| ++|+||||||||||+|+|+|...+ |.|.+++. ++++||.........++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999876 67777642 223333210000000122
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-----------
Q 024738 119 ADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT----------- 187 (263)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts----------- 187 (263)
+++....... . .... . .+....++.+.+|||||+||+.|++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r-----~-~~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~ 175 (274)
T 2x8a_A 110 DEVDALCPRR-----S-DRET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFV 175 (274)
T ss_dssp ETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEEC
T ss_pred ehhhhhhccc-----C-CCcc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEe
Confidence 2221111000 0 0000 0 1233445667789999999999999999999985 99864
Q ss_pred -CCCHHHHHHHHHHH
Q 024738 188 -FLDESDQFGVIEAV 201 (263)
Q Consensus 188 -~LD~~~~~~l~~~l 201 (263)
--|...+.++++.+
T Consensus 176 ~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 176 GLPPPADRLAILKTI 190 (274)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 34677777666654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-15 Score=131.50 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=67.6
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---cC-------------ceEEEecCCCCcc----------
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---KR-------------PKSFVFQNPDHQV---------- 112 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---~~-------------~~~~v~q~~~~~~---------- 112 (263)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ ++ .++|++|.|....
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999987 32 3689999985321
Q ss_pred -----cccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-cccCCCCCCCCh
Q 024738 113 -----VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-NYLQRPVQTLSG 161 (263)
Q Consensus 113 -----~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 161 (263)
...++ +|+.|+.... ..+...++.++++.++|. +..++++.+||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 11145 6665542111 123345678999999996 677888888885
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=117.29 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=89.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
.+|++++++|||||||||+++.|++.+.+++| .++.++.+++. ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----~~V~lv~~D~~----r~~a~eqL~~------------------ 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----KKIAFITTDTY----RIAAVEQLKT------------------ 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----CCEEEEECCCS----STTHHHHHHH------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CEEEEEecCcc----cchHHHHHHH------------------
Confidence 47999999999999999999999999988888 24566777652 2244444332
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCCcEEEE-EccC
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG-DSGEVTALW-VTHR 219 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~~~~~tiii-vtH~ 219 (263)
+.+..|+..... .+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+.. ...+.++++ +||.
T Consensus 156 ~~~~~gl~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 156 YAELLQAPLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp HHTTTTCCCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred HHHhcCCCeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 122233332111 12 2334556664 4999999999 999998766555444332211 111234444 4998
Q ss_pred cchh-hcCCEEEEEeCCEEEEe
Q 024738 220 LEEL-EYADGAFYMEDGKIVMQ 240 (263)
Q Consensus 220 ~~~~-~~~d~v~~l~~G~i~~~ 240 (263)
.+.+ +.++++..+..+.++..
T Consensus 226 ~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 226 YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEe
Confidence 7776 45776655666777654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-14 Score=129.25 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=66.2
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---cC------------ceEEEecCCCCcccc---cCHHHH
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV---KR------------PKSFVFQNPDHQVVM---PTVEAD 120 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~---~~------------~~~~v~q~~~~~~~~---~tv~~~ 120 (263)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ ++ ..+|++|.|....+. .++ ++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 678899999999999999999999999999999999987 32 158999998654321 267 77
Q ss_pred HH--hh-c-------cCCC-CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHH
Q 024738 121 VA--FG-L-------GNLN-LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQR 166 (263)
Q Consensus 121 ~~--~~-~-------~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 166 (263)
+. |+ + ...+ ....+....+.++++.++|.+...+....|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 73 22 1 0111 1112233567889999999875545556777788773
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-13 Score=127.65 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=44.6
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 489999999999 99999999999999999999999999999998853
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-12 Score=112.48 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=93.5
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCccc
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVV 113 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~ 113 (263)
+.++++++.|+.. . ++++|+ +|++++++|+|||||||+++.|+|++.+..|+|.+. ..++.
T Consensus 77 ~~~~~l~~~~~~~-----~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~------~~d~~---- 137 (295)
T 1ls1_A 77 TVYEALKEALGGE-----A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV------AADTQ---- 137 (295)
T ss_dssp HHHHHHHHHTTSS-----C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE------ECCSS----
T ss_pred HHHHHHHHHHCCC-----C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe------cCCcc----
Confidence 5667788888542 1 688888 999999999999999999999999998888887653 23321
Q ss_pred ccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHH
Q 024738 114 MPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL-TTFLDES 192 (263)
Q Consensus 114 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP-ts~LD~~ 192 (263)
.+...+.+ ..+.+..++.-..... ..+-.+.+|.+|+++...+++++|+||| +.++|..
T Consensus 138 ~~~~~~ql------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 138 RPAAREQL------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp CHHHHHHH------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred cHhHHHHH------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 11111111 1123445665332111 2234456789999998899999999999 9999998
Q ss_pred HHHHHHHHHHHH
Q 024738 193 DQFGVIEAVKNL 204 (263)
Q Consensus 193 ~~~~l~~~l~~l 204 (263)
...++.+.....
T Consensus 198 ~~~~l~~~~~~~ 209 (295)
T 1ls1_A 198 LMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc
Confidence 888888777665
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=123.15 Aligned_cols=174 Identities=11% Similarity=0.105 Sum_probs=113.1
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHH---hhc--
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA---FGL-- 125 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~---~~~-- 125 (263)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..|. .+.|+.-+.. ...+...+. ++.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-----~Vl~~s~E~s----~~~l~~r~~~~~~~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-----NVAIFSLEMS----AQQLVMRMLCAEGNINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-----CEEEEESSSC----HHHHHHHHHHHHHTCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-----cEEEEECCCC----HHHHHHHHHHHHcCCCH
Confidence 35789998889999999999999999999999999876554441 2333332211 001111110 110
Q ss_pred ---cCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC--------HH
Q 024738 126 ---GNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLD--------ES 192 (263)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD--------~~ 192 (263)
....+... ...++.++++.++..+..-.....+|.++.+ +.++.+. ++|+++++|+++.-.+ ..
T Consensus 261 ~~l~~g~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~ 337 (454)
T 2r6a_A 261 QNLRTGKLTPE-DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQ 337 (454)
T ss_dssp HHHHTSCCCHH-HHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHH
T ss_pred HHHhcCCCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHH
Confidence 01123322 2345556666665444333335689999987 5666666 7899999999998774 33
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcc---------C--cc--------hhh-cCCEEEEEeCCEE
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTH---------R--LE--------ELE-YADGAFYMEDGKI 237 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH---------~--~~--------~~~-~~d~v~~l~~G~i 237 (263)
....+.+.|+.++++ .+++||+++| + +. .++ .||.|++|..++.
T Consensus 338 ~i~~i~~~Lk~lAke-~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 338 EVSEISRSLKALARE-LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHH-hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 446777788888765 3689999999 2 32 343 5999999987764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=108.13 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=88.5
Q ss_pred cceece-eeEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCC
Q 024738 52 PILRDC-SFSVPSGQLWMLLGPNGCGKSTLL-KVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129 (263)
Q Consensus 52 ~iL~~v-sl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~ 129 (263)
+.|+.+ .--+++|++++|.||||||||||+ +++.+..+...+.+ |+..+.. ...+.+.+. ..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~-------~~~~e~~----~~~~~~~~~----~~g 74 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGI-------YVALEEH----PVQVRQNMA----QFG 74 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE-------EEESSSC----HHHHHHHHH----TTT
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEE-------EEEccCC----HHHHHHHHH----HcC
Confidence 457776 667999999999999999999995 45555544333322 2222211 001222211 112
Q ss_pred CChHHHHHHHHHHHH-------HcCCCcccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHH
Q 024738 130 LTHDEVRSKVAKALD-------AVGMSNYLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFL--DESDQFGVI 198 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~-------~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~L--D~~~~~~l~ 198 (263)
...++.... .-+. .++.....+.....-+....+....++.++ .+|+++++|+|++.+ |+....+++
T Consensus 75 ~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l 152 (247)
T 2dr3_A 75 WDVKPYEEK--GMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII 152 (247)
T ss_dssp CCCHHHHHH--TSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred CCHHHHhhC--CcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence 221111000 0000 000000000111111122223333334333 689999999999988 665555666
Q ss_pred HHHHHHHhcCCCcEEEEEccCcch--------h-hcCCEEEEEeC
Q 024738 199 EAVKNLLGDSGEVTALWVTHRLEE--------L-EYADGAFYMED 234 (263)
Q Consensus 199 ~~l~~l~~~~~~~tiiivtH~~~~--------~-~~~d~v~~l~~ 234 (263)
..+.+++++ .|+|||+++|.... + ..||.++.|+.
T Consensus 153 ~~l~~~~~~-~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 153 LQLKRVLAG-TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHH-TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHH-CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 666666554 46899999998765 3 46899999974
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-14 Score=137.34 Aligned_cols=165 Identities=17% Similarity=0.157 Sum_probs=98.5
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEEc--CceEEEecCCCCcccc-cCHHHHHHhhccCCC
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKPTNGHVYVK--RPKSFVFQNPDHQVVM-PTVEADVAFGLGNLN 129 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p~~G~I~~~--~~~~~v~q~~~~~~~~-~tv~~~~~~~~~~~~ 129 (263)
+.+++++.++..+.|.|++||||||+++.|.. +.+++.|++.+. ...+.-++.....+.. .+|..+.........
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~ 237 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALR 237 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHH
Confidence 35788999999999999999999999999876 556666766542 1111111111100000 011111111111011
Q ss_pred CChHHHHHHHHHHHHHcCCCcccC---CCCCCCChHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCCHHHHH
Q 024738 130 LTHDEVRSKVAKALDAVGMSNYLQ---RPVQTLSGGQKQRV----------AIAGALAEACK-VLLLDELTTFLDESDQF 195 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgGqkqRv----------~lAral~~~p~-llllDEPts~LD~~~~~ 195 (263)
+...+.+++. +++...|+.+... +....+|+||+|+. .+|+++...|. ++++||+++-+|.. ..
T Consensus 238 ~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~ 315 (512)
T 2ius_A 238 WCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GK 315 (512)
T ss_dssp HHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hH
Confidence 1234555554 6788888865432 22245788887752 35666777888 89999999988843 34
Q ss_pred HHHHHHHHHHhcC--CCcEEEEEccCcc
Q 024738 196 GVIEAVKNLLGDS--GEVTALWVTHRLE 221 (263)
Q Consensus 196 ~l~~~l~~l~~~~--~~~tiiivtH~~~ 221 (263)
.+.+.|.++++.. -|.++|++||++.
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 4556666554432 2789999999987
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-12 Score=104.50 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=73.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEEcCc-eEE-EecCCCCcccccCHHHHHHhh---ccCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKP-----------TNGHVYVKRP-KSF-VFQNPDHQVVMPTVEADVAFG---LGNLN 129 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~~~-~~~-v~q~~~~~~~~~tv~~~~~~~---~~~~~ 129 (263)
.++|+|+||||||||++.++|...+ ++|+|.+++. +.+ +...+....+...+....... +-.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999998765 5788888764 221 122221111111112211110 00011
Q ss_pred CChHHHHHHHHHHHH---H-c--CCC--cccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024738 130 LTHDEVRSKVAKALD---A-V--GMS--NYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAV 201 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~---~-~--~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l 201 (263)
.......+.+..+++ . . +.. ...++ ..|..-..+.+.+|++++.+|+++++| ||++|..+..++++.|
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTI 186 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHH
Confidence 111111111111221 1 1 100 01111 012111223467899999999999999 9999999999999888
Q ss_pred HHH
Q 024738 202 KNL 204 (263)
Q Consensus 202 ~~l 204 (263)
.+.
T Consensus 187 ~~~ 189 (191)
T 1oix_A 187 LTE 189 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-13 Score=110.27 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=35.4
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------ceEEEecCCC
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------PKSFVFQNPD 109 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~~~~v~q~~~ 109 (263)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+ .++|+||++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDET 61 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHH
Confidence 57889999999999999999999999999974 344321 3578888754
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.13 E-value=8.9e-11 Score=106.95 Aligned_cols=143 Identities=17% Similarity=0.332 Sum_probs=85.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
-+++|+++.|.||||||||||+..++.......|. +.|+.-+.. +. ...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~------vlyi~~E~~---~~-~~~--------------------- 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI------AAFIDAEHA---LD-PEY--------------------- 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------EEEEESSCC---CC-HHH---------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe------EEEEECCCC---cC-HHH---------------------
Confidence 57899999999999999999987777554333333 334443321 11 010
Q ss_pred HHHHHHcCCC--cc-cCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHH
Q 024738 140 AKALDAVGMS--NY-LQRPVQTLSGGQKQRVAIAGALAEA--CKVLLLDELTTFL----------DE---SDQFGVIEAV 201 (263)
Q Consensus 140 ~~~l~~~~l~--~~-~~~~~~~LSgGqkqRv~lAral~~~--p~llllDEPts~L----------D~---~~~~~l~~~l 201 (263)
.+.+|+. .. ... ..+. .|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.+
T Consensus 106 ---a~~lG~~~~~l~i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 106 ---AKKLGVDTDSLLVSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp ---HHHTTCCGGGCEEEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred ---HHHcCCCHHHeEEec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 1112221 00 111 1232 3445678888755 9999999999998 33 1222344444
Q ss_pred HHH---HhcCCCcEEEEEccCcc----------------hhh-cCCEEEEEeCCEEEEecC
Q 024738 202 KNL---LGDSGEVTALWVTHRLE----------------ELE-YADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 202 ~~l---~~~~~~~tiiivtH~~~----------------~~~-~~d~v~~l~~G~i~~~g~ 242 (263)
+++ +++ .++|||+++|... .++ +||.++.++.++++..|+
T Consensus 178 ~~L~~~a~~-~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 178 RKMTGALNN-SGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHH-HTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHH-hCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 444 343 3689999999653 144 599999998876654443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-14 Score=122.93 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=83.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
..+++++.+.|++. .++++++|++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 49 ~~~l~~l~~~~~~~-----~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~ 119 (278)
T 1iy2_A 49 KEELKEIVEFLKNP-----SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA 119 (278)
T ss_dssp HHHHHHHHHHHHCH-----HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHHHHCH-----HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHH
Confidence 45567777777542 5899999999999 99999999999999999999875 78888753
Q ss_pred ceEEEecCCCCcccccCHHHHHH-hhccCCC---CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVA-FGLGNLN---LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.++++||.........++.+++. ++..... ....+..+.+.+++ .+|||||+||+.+++|+..
T Consensus 120 ~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 120 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH-------------HHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEecC
Confidence 13455664321111113344442 2211100 01112222333332 3589999999999999999
Q ss_pred CCCEEEEeCCC
Q 024738 176 ACKVLLLDELT 186 (263)
Q Consensus 176 ~p~llllDEPt 186 (263)
+|++ +|++.
T Consensus 187 ~p~~--ld~~l 195 (278)
T 1iy2_A 187 RPDI--LDPAL 195 (278)
T ss_dssp CTTS--SCHHH
T ss_pred Cchh--CCHhH
Confidence 9987 67653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.8e-14 Score=121.51 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=85.2
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------ 99 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------ 99 (263)
...+++++.+.|++. .+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 24 ~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~ 94 (254)
T 1ixz_A 24 AKEELKEIVEFLKNP-----SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGA 94 (254)
T ss_dssp HHHHHHHHHHHHHCH-----HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHH
T ss_pred HHHHHHHHHHHHHCH-----HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHH
Confidence 356777888777542 5899999999999 99999999999999999999875 68887753
Q ss_pred -ceEEEecCCCCcccccCHHHHH-HhhccCCC---CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADV-AFGLGNLN---LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~-~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
.++++||.........++.+++ .++..... ....+..+.+.+++ .+|||||+||+.+++|+.
T Consensus 95 ~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEcc
Confidence 1345555432111111333444 22211100 01122222233333 357899999999999999
Q ss_pred hCCCEEEEeCCCC
Q 024738 175 EACKVLLLDELTT 187 (263)
Q Consensus 175 ~~p~llllDEPts 187 (263)
.+|++ +|++.-
T Consensus 162 ~~p~~--ld~~l~ 172 (254)
T 1ixz_A 162 NRPDI--LDPALL 172 (254)
T ss_dssp SCGGG--SCGGGG
T ss_pred CCchh--CCHHHc
Confidence 99987 677654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-11 Score=120.18 Aligned_cols=161 Identities=18% Similarity=0.143 Sum_probs=99.2
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEEcC--------ceEEE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN-GHVYVKR--------PKSFV 104 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~-G~I~~~~--------~~~~v 104 (263)
+.-++++.-|+.. .+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+.+ .++++
T Consensus 35 ~rp~~l~~i~G~~-----~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 35 VPEKLIDQVIGQE-----HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp CCSSHHHHCCSCH-----HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred ccccccceEECch-----hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 3334555556543 58999999999999999999999999999999999999887 7776632 35555
Q ss_pred ecCCCCcccccCHHH----------------------HHHhhccCCCCCh-HHHHHHHHHHHHHcCCCcccCCCCCCCCh
Q 024738 105 FQNPDHQVVMPTVEA----------------------DVAFGLGNLNLTH-DEVRSKVAKALDAVGMSNYLQRPVQTLSG 161 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~----------------------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 161 (263)
++...... ....+. |+... +..... ...........+.+|.-+........+|+
T Consensus 110 p~g~~~~~-~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~--~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 110 PACQGRRI-VEKYREKAKSQESVKSSNMRLKSTVLVPKLLVD--NCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp ETTHHHHH-HHHHHHHHHHHTCC-----------CCCEEEEC--CTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred ecchHHHH-HHHHHHhhccchhhhhhcccccccccccceeec--cccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 55321000 000000 00000 000000 00000000011222322222233467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 162 GQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 162 GqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
|++|++..++....++.+|++||... |++..+..+++.|.+
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999999988 899999988888875
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-12 Score=108.96 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=42.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.|+++|+...|+ . +|+|.+ ++++|+|||||||||||++|+|++.|++|+|.+++
T Consensus 9 ~l~l~~~~~~~~--------~----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE--------E----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC--------C----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 688888866552 1 456666 89999999999999999999999999999987753
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=95.72 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 024738 167 VAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLL 205 (263)
Q Consensus 167 v~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 205 (263)
...|++++.+|+++++| ||++|..+..++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=104.17 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhCCCC-----------CCceEEEEcCceEEEecCCCCccccc--CH------HHHHH
Q 024738 63 SGQL-WMLLGPNGCGKSTLLKVLAGLLK-----------PTNGHVYVKRPKSFVFQNPDHQVVMP--TV------EADVA 122 (263)
Q Consensus 63 ~Ge~-~~l~G~NGsGKSTLlk~i~Gl~~-----------p~~G~I~~~~~~~~v~q~~~~~~~~~--tv------~~~~~ 122 (263)
.|-. ++|+|++|||||||++.|+|... |+.|.|.+++..-.+.+.+......+ .+ .+.+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK 256 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence 3444 99999999999999999999875 56788888764322333332111100 11 11111
Q ss_pred h------hccCCCCC--hHHHHHHHHHHHHHcCCCccc----CCCCCCCChHHHHHHHHH----HHH-hhCCCEEEEeCC
Q 024738 123 F------GLGNLNLT--HDEVRSKVAKALDAVGMSNYL----QRPVQTLSGGQKQRVAIA----GAL-AEACKVLLLDEL 185 (263)
Q Consensus 123 ~------~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~----~~~~~~LSgGqkqRv~lA----ral-~~~p~llllDEP 185 (263)
. ........ ..+..+.+.++++.+++.+.. ..++..+|+|++||+.++ +++ ..+|++ +|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 0 01111111 112223456677777764321 234667898899988877 555 334444 89
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 024738 186 TTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~ 206 (263)
+|++|..+...+++.|.+...
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHhc
Confidence 999999999999999988654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.8e-11 Score=103.92 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=35.7
Q ss_pred ceEEEEeE-EEEECCCccccccceeceeeEEeC---CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 32 VAIECSNL-NYSITKKQRKLVPILRDCSFSVPS---GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 32 ~~l~~~nl-~~~y~~~~~~~~~iL~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|+++|+ +|+|++. .++|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~----~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEE----QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCc----chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 9999322 3699999999999 9999999999999999999999865
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=103.22 Aligned_cols=117 Identities=23% Similarity=0.283 Sum_probs=77.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
..++++++.+++| +.|+||+|+|||||+|++++.... ..-++ +..+.+ ..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---------~f~~i-----------s~~~~~-------~~- 88 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---------PFFHI-----------SGSDFV-------EL- 88 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---------CEEEE-----------EGGGTT-------TC-
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---------CeeeC-----------CHHHHH-------HH-
Confidence 3678888888888 889999999999999999984310 00011 000000 00
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHH
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL----------TTFLDESDQFGVIEAV 201 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP----------ts~LD~~~~~~l~~~l 201 (263)
.. =++++++|..+++|....|.+|++||+ ++|.|......+.+++
T Consensus 89 -----------------------~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL 143 (476)
T 2ce7_A 89 -----------------------FV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLL 143 (476)
T ss_dssp -----------------------CT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHH
T ss_pred -----------------------Hh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHH
Confidence 00 026788899999999999999999999 3467776666666666
Q ss_pred HHHHh--cCCCcEEEEEccCcchh
Q 024738 202 KNLLG--DSGEVTALWVTHRLEEL 223 (263)
Q Consensus 202 ~~l~~--~~~~~tiiivtH~~~~~ 223 (263)
..+-. ...+..||.+||+++.+
T Consensus 144 ~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 144 VEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHhccCCCCCEEEEEecCChhhh
Confidence 65521 12357899999998654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-12 Score=119.44 Aligned_cols=127 Identities=18% Similarity=0.216 Sum_probs=80.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE-c----C---ceEEEecCCCCcccccCHHHHHHh
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-K----R---PKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~-~----~---~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
.+++++|+.+++|++++|+||||||||||+++|+|. .+|.+.. . + .++++||.... +.+++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~------l~dd~~~ 227 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLV------VFEDVKG 227 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCE------EETTCCC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHH------HHHHHHH
Confidence 589999999999999999999999999999999995 4677765 1 1 23444543210 0111111
Q ss_pred hcc-CCCCCh-HH--HHHHHHHHHHH---cCCC-------------cccCCCCCCCChHHHHHHHHHHHHhhCCCEEE-E
Q 024738 124 GLG-NLNLTH-DE--VRSKVAKALDA---VGMS-------------NYLQRPVQTLSGGQKQRVAIAGALAEACKVLL-L 182 (263)
Q Consensus 124 ~~~-~~~~~~-~~--~~~~~~~~l~~---~~l~-------------~~~~~~~~~LSgGqkqRv~lAral~~~p~lll-l 182 (263)
... ...... .. ....+...++. +.++ ..++.....+++|++||+..+.+++..|++++ |
T Consensus 228 ~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyL 307 (377)
T 1svm_A 228 TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCL 307 (377)
T ss_dssp STTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred HHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEE
Confidence 110 000100 00 11223333331 1111 23445567899999999999888899999988 9
Q ss_pred eCCCC
Q 024738 183 DELTT 187 (263)
Q Consensus 183 DEPts 187 (263)
|+|+.
T Consensus 308 d~~~~ 312 (377)
T 1svm_A 308 ERSEF 312 (377)
T ss_dssp HTCTH
T ss_pred eCCHH
Confidence 99987
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=89.07 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=67.1
Q ss_pred ce--eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---------Ec----------CceEEEecCCCCc
Q 024738 53 IL--RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY---------VK----------RPKSFVFQNPDHQ 111 (263)
Q Consensus 53 iL--~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~---------~~----------~~~~~v~q~~~~~ 111 (263)
.+ ++++|++.+| +++|+||||||||||+++|++++.+..|... .. ..+.++||++...
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 56 7899999999 9999999999999999999998877665321 11 1467888876432
Q ss_pred ccc----cCHHHHHHh-hccCCCCC-hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHH
Q 024738 112 VVM----PTVEADVAF-GLGNLNLT-HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 112 ~~~----~tv~~~~~~-~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 168 (263)
+.. .++...+.- +...+... .......+.++++.+++... .+.-++.|+.++++
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~---~~~~~~qg~~~~l~ 152 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPD---GYNIVLQGDITKFI 152 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTT---CTTEECTTCTTHHH
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCC---CCEEEEcccHHHHH
Confidence 111 011100000 00000000 01113557788888888742 12346777777664
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-09 Score=107.28 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=89.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
.+..|+.+.|+||+||||||++.++++...+..| .+...++.+ |.. .....+.+.+.-.. +..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl~-P~r-~La~q~~~~l~~~~---~~~-------- 167 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACTQ-PRR-VAAMSVAQRVAEEM---DVK-------- 167 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEEE-SCH-HHHHHHHHHHHHHT---TCC--------
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEecC-chH-HHHHHHHHHHHHHh---CCc--------
Confidence 3568999999999999999999998765544432 111111212 110 00001111111000 000
Q ss_pred HHHHHHcCC----Cc--ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 140 AKALDAVGM----SN--YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT-FLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 140 ~~~l~~~~l----~~--~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts-~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
+...+|. +. ..+..+..+|.|+.+|..++++++.+++++|+|||.. +||......+++.+..... ...+
T Consensus 168 --v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~--~~~i 243 (773)
T 2xau_A 168 --LGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP--DLKI 243 (773)
T ss_dssp --BTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT--TCEE
T ss_pred --hhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC--CceE
Confidence 0000110 11 1234566789999999999999999999999999996 9998877666666665432 2357
Q ss_pred EEE-EccCcchh-hcCC
Q 024738 213 ALW-VTHRLEEL-EYAD 227 (263)
Q Consensus 213 iii-vtH~~~~~-~~~d 227 (263)
|++ +||+.+.+ ++++
T Consensus 244 Il~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 244 IIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEESCSCCHHHHHHTT
T ss_pred EEEeccccHHHHHHHhc
Confidence 777 49998776 4554
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-09 Score=96.32 Aligned_cols=130 Identities=13% Similarity=0.158 Sum_probs=81.4
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLT 131 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~ 131 (263)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++.......+.| .|+.-+ + +
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V------l~fSlE------m-s--------------- 85 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV------AVFSLE------M-S--------------- 85 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE------EEEESS------S-C---------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE------EEEeCC------C-C---------------
Confidence 46777776799999999999999999999987766432222222 222111 1 1
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 024738 132 HDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEV 211 (263)
Q Consensus 132 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~ 211 (263)
.++...++......+.+..+.+ ..||.++++|+..|...+.+++++|.|+|...++ .+...++++.++.++.
T Consensus 86 ~~ql~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~l~~~~gg~ 157 (338)
T 4a1f_A 86 AEQLALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRKLKSQHKEL 157 (338)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHHHHHhcCCC
Confidence 2222222222222233333222 4799999999999999999999999999975533 3444555443332146
Q ss_pred EEEEEc
Q 024738 212 TALWVT 217 (263)
Q Consensus 212 tiiivt 217 (263)
.+|+|-
T Consensus 158 ~lIVID 163 (338)
T 4a1f_A 158 GIAFID 163 (338)
T ss_dssp EEEEEE
T ss_pred CEEEEe
Confidence 666664
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-09 Score=88.78 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=74.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
+++|+|+|||||||+.++|+++ |...++ .+. +...+. ..+ . ..+.++.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id-------~d~--------~~~~~~----~~~--~----~~~~~i~~~ 53 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVD-------ADV--------VAREVV----AKD--S----PLLSKIVEH 53 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEE-------HHH--------HHHHTT----CSS--C----HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccc-------hHH--------HHHHHc----cCC--h----HHHHHHHHH
Confidence 6899999999999999999993 422221 110 000000 000 0 123445566
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh--
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-- 223 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-- 223 (263)
+|...+ .|.|+.+|..+++.+..+|+.+..+ .+.++|..+..+.+.+... .+.++|+.+|.+.+.
T Consensus 54 ~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~----~~~~vv~~~~~l~e~~~ 120 (206)
T 1jjv_A 54 FGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ----TAPYTLFVVPLLIENKL 120 (206)
T ss_dssp HCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC----CSSEEEEECTTTTTTTC
T ss_pred hCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc----CCCEEEEEechhhhcCc
Confidence 665422 3678999999999888887654333 3456677666666555432 134788899988664
Q ss_pred -hcCCEEEEEeC
Q 024738 224 -EYADGAFYMED 234 (263)
Q Consensus 224 -~~~d~v~~l~~ 234 (263)
..||.+++++-
T Consensus 121 ~~~~d~vi~l~~ 132 (206)
T 1jjv_A 121 TALCDRILVVDV 132 (206)
T ss_dssp GGGCSEEEEEEC
T ss_pred HhhCCEEEEEEC
Confidence 46999999864
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-09 Score=96.61 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc-C--ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK-R--PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~-~--~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
..-.++|+|++|+|||||++.++|.. +..|...+. . .++.+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~------------------------------ 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYF------------------------------ 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTE------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCc------------------------------
Confidence 45589999999999999999999965 211111000 0 0111111100
Q ss_pred HHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEc-
Q 024738 140 AKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLD-ELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT- 217 (263)
Q Consensus 140 ~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllD-EPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivt- 217 (263)
.+..++.....+.++.++|+|++|++. +.+...++-++++| +|.+++|......+++.+.+... +..+|+|.
T Consensus 215 --~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~N 288 (357)
T 2e87_A 215 --RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVIN 288 (357)
T ss_dssp --EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEEC
T ss_pred --eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEE
Confidence 011122223334567789999998876 55556777889999 99999999998888887776532 46778888
Q ss_pred -cCcc
Q 024738 218 -HRLE 221 (263)
Q Consensus 218 -H~~~ 221 (263)
||+.
T Consensus 289 K~Dl~ 293 (357)
T 2e87_A 289 KIDVA 293 (357)
T ss_dssp CTTTC
T ss_pred CcccC
Confidence 8874
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.4e-10 Score=93.73 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=42.5
Q ss_pred EeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EEc
Q 024738 37 SNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV--YVK 98 (263)
Q Consensus 37 ~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I--~~~ 98 (263)
+|+++.++. ..+.+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++
T Consensus 3 ~~~~~~~~~-----~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 3 TNIKWHECS-----VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp -------CC-----CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCcccccc-----cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 466666654 357888999999999999999999999999999999987 67877 554
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-09 Score=87.47 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=30.1
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
+++.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.74 E-value=5.3e-08 Score=88.02 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=71.1
Q ss_pred CCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH
Q 024738 63 SGQ--LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140 (263)
Q Consensus 63 ~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~ 140 (263)
.+. .+.|.||+|+|||||++.+++...+..+ ..+.++..... .+..+ .+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-----~~~~~i~~~~~-----~~~~~------------------~~~ 92 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-----ARFVYINGFIY-----RNFTA------------------IIG 92 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-----CEEEEEETTTC-----CSHHH------------------HHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-----eeEEEEeCccC-----CCHHH------------------HHH
Confidence 456 8999999999999999999998876531 11122221111 01111 111
Q ss_pred HHHHHcCCCcccCCCCCCCChHHHHHHHHHHHH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Q 024738 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGAL-AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGD-SGEVTALWVTH 218 (263)
Q Consensus 141 ~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral-~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-~~~~tiiivtH 218 (263)
.++..++.. .+....+.++.........- ..+|.+|++||+... |......+...+.++... ..+.++|++||
T Consensus 93 ~l~~~l~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 93 EIARSLNIP----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHTTCC----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHhCcc----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 222223321 11122333332222111111 245889999999876 888877777777554320 02578999999
Q ss_pred Ccch
Q 024738 219 RLEE 222 (263)
Q Consensus 219 ~~~~ 222 (263)
+.+.
T Consensus 168 ~~~~ 171 (389)
T 1fnn_A 168 NDAV 171 (389)
T ss_dssp STHH
T ss_pred CchH
Confidence 8854
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-08 Score=90.29 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=34.8
Q ss_pred ceeceee--EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 53 ILRDCSF--SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 53 iL~~vsl--~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
.|+.+-= =+++|+++.|.||+|||||||+..+++...+..|.|
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4544422 488999999999999999999999999877766655
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.3e-09 Score=95.76 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=81.3
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEEcCc-------------eEEEecCCCCcc-ccc
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG--LLKPTNGHVYVKRP-------------KSFVFQNPDHQV-VMP 115 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G--l~~p~~G~I~~~~~-------------~~~v~q~~~~~~-~~~ 115 (263)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.... .+...+.+...+ .+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence 48999999998 899999999999999999999 66777776643221 111111111000 000
Q ss_pred CHHHHHH-----hhccCCCCChHHHHHHH----HHHHHHcCCCcccC-CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 024738 116 TVEADVA-----FGLGNLNLTHDEVRSKV----AKALDAVGMSNYLQ-RPVQTLSGGQKQRVAIAGALAEACKVLLLDEL 185 (263)
Q Consensus 116 tv~~~~~-----~~~~~~~~~~~~~~~~~----~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~llllDEP 185 (263)
.+.+.+. ......+++.....-.+ ..-+..+++....+ ....+.+..++|+..+++..+.+|+++|+.-.
T Consensus 102 ~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~ 181 (360)
T 3t34_A 102 AVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAIS 181 (360)
T ss_dssp HHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEee
Confidence 1111110 00000000000000000 00000111111111 11234678899999999999999998888754
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 186 TTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 186 ts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
.+..|... ...+++++.+... +..+|+++|.
T Consensus 182 ~~~~~~~~-~~~~~l~~~~~~~-~~~~i~V~nK 212 (360)
T 3t34_A 182 PANQDLAT-SDAIKISREVDPS-GDRTFGVLTK 212 (360)
T ss_dssp ETTSCGGG-CHHHHHHHHSCTT-CTTEEEEEEC
T ss_pred cccCCcCC-HHHHHHHHHhccc-CCCEEEEEeC
Confidence 44455443 3445566665332 2357777776
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.2e-10 Score=107.85 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
.+.+++++...|.+. .+++++++.+++| +.|+||||+|||||+|+|++... .+.|.+++.
T Consensus 39 ~k~~l~~lv~~l~~~-----~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~ 109 (499)
T 2dhr_A 39 AKEELKEIVEFLKNP-----SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGA 109 (499)
T ss_dssp HHHHHHHHHHHHHCG-----GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHH
T ss_pred HHHHHHHHHHHhhch-----hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHH
Confidence 345666666656442 4789999999999 99999999999999999999874 577777531
Q ss_pred --eEEEecCCCCcccccCHHHHHHhhccCCC----CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh
Q 024738 101 --KSFVFQNPDHQVVMPTVEADVAFGLGNLN----LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA 174 (263)
Q Consensus 101 --~~~v~q~~~~~~~~~tv~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 174 (263)
+..+||..........+.+++........ ....+..+.+.+++. +||||++|+..+++|..
T Consensus 110 ~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEec
Confidence 23445543211000122233321111111 112233334444443 36788888888899999
Q ss_pred hCCCEEEEeCCCCC
Q 024738 175 EACKVLLLDELTTF 188 (263)
Q Consensus 175 ~~p~llllDEPts~ 188 (263)
++|++ |||+.-.
T Consensus 177 n~p~~--LD~aLlr 188 (499)
T 2dhr_A 177 NRPDI--LDPALLR 188 (499)
T ss_dssp SCGGG--SCTTTSS
T ss_pred CChhh--cCccccc
Confidence 99987 8888753
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-08 Score=84.08 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEE
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP-TNGHVY 96 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G~I~ 96 (263)
.+|++++|+||||||||||+++|++..++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999998864 455553
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-08 Score=84.57 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=30.0
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
+..++.++|++++|+||||||||||+++|+|.+ |.+.+++
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 334567899999999999999999999999987 7777754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-08 Score=83.47 Aligned_cols=38 Identities=29% Similarity=0.180 Sum_probs=24.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999765
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-08 Score=88.62 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=33.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEE
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLA---GLLKPTNGHVY 96 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~---Gl~~p~~G~I~ 96 (263)
++|++++|+|||||||||++|+|+ |+..|++|.|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 789999999999999999999999 99999999997
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-08 Score=91.12 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999977554
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-08 Score=97.18 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=45.7
Q ss_pred EEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 35 ECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
-++++.+.|.. ..++.++++++ +|++++|+||||||||||+|+|++.+.+..|.|.+
T Consensus 85 G~~~vk~~i~~-----~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 85 GLEKVKERILE-----YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp SCHHHHHHHHH-----HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred cHHHHHHHHHH-----HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 34555555543 24788999998 89999999999999999999999999887776654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-08 Score=85.01 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=33.8
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
+-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 33446689999999999999999999999998 67777654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-08 Score=91.11 Aligned_cols=129 Identities=15% Similarity=0.184 Sum_probs=73.2
Q ss_pred cceeceeeEEeCCC------EEEEECCCCCcHHHHHHHHhCCCC--CCceEEEEcCceEEEecCCCCcccccCHHHHHHh
Q 024738 52 PILRDCSFSVPSGQ------LWMLLGPNGCGKSTLLKVLAGLLK--PTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAF 123 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge------~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~ 123 (263)
..|++++..|.+++ ++||+||||||||||+++|++++. |++|.| +++.++... ......+....
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v------~~i~~D~f~--~~~~~l~~~~~ 145 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV------EVITTDGFL--YSNAKLEKQGL 145 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE------EEEEGGGGB--CCHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE------EEEeecccc--cchhhhhhHHH
Confidence 58899999998887 999999999999999999999987 455544 556666421 11111111100
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 024738 124 GLGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE 191 (263)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~ 191 (263)
....+.........+.+.++.+.-.. ....+ .+|.+..+|+..+...+..|+++|++.|..-.|.
T Consensus 146 -~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 146 -MKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp -GGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -HhhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 01112211111122333333331111 11111 2344444444323345578999999999887765
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.5e-08 Score=80.43 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=27.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999877
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-08 Score=82.13 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=34.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK 98 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~ 98 (263)
..++|++++|+|+||||||||+++|++++++..|.|.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 467899999999999999999999999998888887653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-07 Score=83.14 Aligned_cols=133 Identities=7% Similarity=0.040 Sum_probs=79.5
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+.|+.+.--+.+|+++.|.|++|+|||||+..++.-.- ..| ..+.|+.-+ + +.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g-----~~vl~~slE------~-s~------------- 108 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DND-----DVVNLHSLE------M-GK------------- 108 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT-----CEEEEEESS------S-CH-------------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC-----CeEEEEECC------C-CH-------------
Confidence 356888876799999999999999999999877764221 112 122222211 1 11
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 024738 131 THDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGE 210 (263)
Q Consensus 131 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~ 210 (263)
++...++......+.+..+.+.. ..||.++++|+..|...+.++++++.|+|... . ..+...++++.++ .+
T Consensus 109 --~~l~~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~---~~i~~~i~~l~~~-~~ 179 (315)
T 3bh0_A 109 --KENIKRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V---NYIWSKTRQTKRK-NP 179 (315)
T ss_dssp --HHHHHHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---HHHHHHHHHHHHT-SS
T ss_pred --HHHHHHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---HHHHHHHHHHHHh-cC
Confidence 12222222222222222222111 23899999999999999989999999998644 2 3345555555433 24
Q ss_pred cE--EEEEcc
Q 024738 211 VT--ALWVTH 218 (263)
Q Consensus 211 ~t--iiivtH 218 (263)
.. +|++-|
T Consensus 180 ~~~~lVVID~ 189 (315)
T 3bh0_A 180 GKRVIVMIDY 189 (315)
T ss_dssp SCCEEEEEEC
T ss_pred CCCeEEEEeC
Confidence 56 777755
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-08 Score=88.92 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=40.3
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
+++++|++++|++++|+|+|||||||++..|++.+.+..|+|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37899999999999999999999999999999999988888865
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.43 E-value=8.8e-07 Score=82.69 Aligned_cols=35 Identities=31% Similarity=0.292 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
++.+++++|+|||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998887776654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-07 Score=79.52 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.8
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4456899999999999999999999999875
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.35 E-value=2.6e-08 Score=88.56 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=74.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC-CC---ceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK-PT---NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~---~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
+.+++|+|++|||||||++.|.|... +. .|+ +.+...+++.++.....+..| .+... ......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~t-Tr~~~~gi~~~~~~~i~~iDT-----------pG~~~-~~~~~l 74 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQT-TRHRIVGIHTEGAYQAIYVDT-----------PGLHM-EEKRAI 74 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSC-CSSCEEEEEEETTEEEEEESS-----------SSCCH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCc-ceeeEEEEEEECCeeEEEEEC-----------cCCCc-cchhhH
Confidence 34899999999999999999999742 11 111 112234555554321111101 11110 000111
Q ss_pred HH--------HHHHcCCCcc-cCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhc
Q 024738 140 AK--------ALDAVGMSNY-LQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDESD-QFGVIEAVKNLLGD 207 (263)
Q Consensus 140 ~~--------~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~~~-~~~l~~~l~~l~~~ 207 (263)
.+ .++.+++--+ .+. ..+|.|++ .+++++. ..|.++++ |.+|... +..+.+.+.++.+.
T Consensus 75 ~~~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 75 NRLMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQ 145 (301)
T ss_dssp HHHHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHh
Confidence 11 1111222112 222 22899886 5667776 78889988 8999876 66777888877643
Q ss_pred CC-CcEEEEEccCcchh
Q 024738 208 SG-EVTALWVTHRLEEL 223 (263)
Q Consensus 208 ~~-~~tiiivtH~~~~~ 223 (263)
.+ ...+.+++|+-+.+
T Consensus 146 ~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 146 MNFLDIVPISAETGLNV 162 (301)
T ss_dssp SCCSEEEECCTTTTTTH
T ss_pred cCcCceEEEECCCCCCH
Confidence 21 13566677765543
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.5e-06 Score=70.41 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGH 94 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~ 94 (263)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 47999999999999999999987766653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.6e-08 Score=92.17 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=35.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE-EcC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG-HVY-VKR 99 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~-~~~ 99 (263)
.+++|++++|+|+||||||||+|+|+|.+.|++| +|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 775 554
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-07 Score=76.10 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=28.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR 99 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~ 99 (263)
.+|++++|+|+|||||||++++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999999875 6666543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.5e-08 Score=95.52 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=30.7
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEE
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKP--TNGHV 95 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I 95 (263)
|+++++|..++|+|+||||||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456789999999999999999999999976654 56766
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.5e-06 Score=73.05 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=71.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
.++..+.|.||+|+|||||++.+++.... . ++.-+.. .
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~---~--------~~~i~~~------~------------------------- 89 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSA---T--------FLNISAA------S------------------------- 89 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTC---E--------EEEEEST------T-------------------------
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCC---C--------eEEeeHH------H-------------------------
Confidence 35678999999999999999999985421 0 1100000 0
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc--CC
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDE----------SDQFGVIEAVKNLLGD--SG 209 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~----------~~~~~l~~~l~~l~~~--~~ 209 (263)
...... -+++++.|..++.+...+|.+|++||+.+-++. .....++..+...... ..
T Consensus 90 ---------l~~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 90 ---------LTSKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ---------TSSSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ---------Hhhccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 000000 135677788888888899999999999776553 2233344444433111 12
Q ss_pred CcEEEEEccCcchh-----hcCCEEEEEe
Q 024738 210 EVTALWVTHRLEEL-----EYADGAFYME 233 (263)
Q Consensus 210 ~~tiiivtH~~~~~-----~~~d~v~~l~ 233 (263)
+..||.+|++.+.+ ..+++++.+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 35678888876543 2467665554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=6.3e-07 Score=83.78 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=34.9
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 175 EACKVLLLDELTTFLDE-SDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 175 ~~p~llllDEPts~LD~-~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
.+|++|++||+..-.+. ..+..++..+..+.. .|..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECCC
Confidence 48999999999877664 677788888888754 357889999974
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4e-06 Score=75.78 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=83.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL--LKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
-+++|+++.|.||+|||||||+..++.. .++..|- ..+.+.|+.-+.. +....+.+.. ...+...+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg--~~~~vlyi~~E~~--~~~~~l~~~~----~~~g~~~~---- 185 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY--PGGKIIFIDTENT--FRPDRLRDIA----DRFNVDHD---- 185 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB--CCCEEEEEESSSC--CCHHHHHHHH----HHTTCCHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC--CCCeEEEEECCCC--CCHHHHHHHH----HHcCCCHH----
Confidence 5789999999999999999999888774 3322110 0122334443321 1000122111 11222221
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH------------HHHHHHHH
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQ-KQRVAIAGALA----EACKVLLLDELTTFLDES------------DQFGVIEA 200 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGq-kqRv~lAral~----~~p~llllDEPts~LD~~------------~~~~l~~~ 200 (263)
++++.+-+. ...+..+ .+.+..++.++ .+++++++|+.++-.... ...+++..
T Consensus 186 ---~~l~~l~~~-------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~ 255 (343)
T 1v5w_A 186 ---AVLDNVLYA-------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSR 255 (343)
T ss_dssp ---HHHHTEEEE-------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHH
T ss_pred ---HHHhceeEe-------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 223322111 1123332 24455566665 579999999999866432 13455566
Q ss_pred HHHHHhcCCCcEEEEEccCcch-------------------hh-cCCEEEEEeCC
Q 024738 201 VKNLLGDSGEVTALWVTHRLEE-------------------LE-YADGAFYMEDG 235 (263)
Q Consensus 201 l~~l~~~~~~~tiiivtH~~~~-------------------~~-~~d~v~~l~~G 235 (263)
|+.++++ .+++||+++|-... ++ .+|-+++|+..
T Consensus 256 L~~la~~-~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~ 309 (343)
T 1v5w_A 256 LQKISEE-YNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKG 309 (343)
T ss_dssp HHHHHHH-HTCEEEEEECC-------------------CCTTTTSSSEEEEEEES
T ss_pred HHHHHHH-hCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEc
Confidence 6666654 36899999885421 33 47888888743
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=81.56 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=43.8
Q ss_pred EEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 36 CSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 36 ~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
.+++++.|+.. . ++++|+ +|++++++|+|||||||++..|++.+.+..|.|.+
T Consensus 79 ~~~L~~~~~~~-----~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 79 YEALKEALGGE-----A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHHHTTSS-----C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHhCCC-----c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34566667542 1 678888 89999999999999999999999999988888765
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.9e-07 Score=75.21 Aligned_cols=42 Identities=24% Similarity=0.128 Sum_probs=35.1
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 57 CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 57 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
+-=++++|.+++|+|++|||||||+++|++.++ .+.+++|+.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~ 55 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDD 55 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGG
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCc
Confidence 334678899999999999999999999999874 356777775
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-07 Score=73.54 Aligned_cols=28 Identities=39% Similarity=0.508 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.|++++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999999999999999999998753
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-07 Score=85.87 Aligned_cols=60 Identities=22% Similarity=0.163 Sum_probs=50.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
+++.+++.+.|+. ..+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..|+|.+
T Consensus 30 ~ie~~~~~~~~~~-----~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 30 LVESRHPRHQALS-----TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHCCCHHHHHHH-----HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HhhcCCchhhhHH-----HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4666777666654 25889999999999999999999999999999999998887777654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8e-07 Score=70.92 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=26.3
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
+.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34566677665 999999999999999999873
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8e-06 Score=73.08 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=81.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCC-ceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL-LKPT-NGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~p~-~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
-+++|+++.|.||+|||||||+..++.. ..|. .|- ..+.+.|+.-+.. +....+.+.. ...+...+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg--~~~~vlyi~~e~~--~~~~~l~~~~----~~~g~~~~---- 170 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG--LSGKAVYIDTEGT--FRWERIENMA----KALGLDID---- 170 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSCEEEEEESSSC--CCHHHHHHHH----HHTTCCHH----
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC--CCCeEEEEECCCC--CCHHHHHHHH----HHhCCCHH----
Confidence 5899999999999999999999887763 3332 110 0122334433221 0010122111 11222221
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHH
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGG-QKQRVAIAGALA---EACKVLLLDELTTFLDE--------SD----QFGVIEAV 201 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgG-qkqRv~lAral~---~~p~llllDEPts~LD~--------~~----~~~l~~~l 201 (263)
++++.+-+. ...+.. +.+.+..++.++ .+|+++++|+.++-... .. ..+++..|
T Consensus 171 ---~~~~~l~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L 240 (324)
T 2z43_A 171 ---NVMNNIYYI-------RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 240 (324)
T ss_dssp ---HHHHTEEEE-------ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHH
T ss_pred ---HHhccEEEE-------eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHH
Confidence 122221111 112333 335667777777 67999999999876532 11 24455566
Q ss_pred HHHHhcCCCcEEEEEccCcch----------------hh-cCCEEEEEeC
Q 024738 202 KNLLGDSGEVTALWVTHRLEE----------------LE-YADGAFYMED 234 (263)
Q Consensus 202 ~~l~~~~~~~tiiivtH~~~~----------------~~-~~d~v~~l~~ 234 (263)
+.++++ .+++||+++|-... ++ .+|.++.++.
T Consensus 241 ~~la~~-~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 241 TRLAEV-YDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HHHHHH-HTCEEEEEEEC------------------------CEEEEEEE
T ss_pred HHHHHH-hCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 666554 36899998885421 22 4788888864
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.7e-07 Score=83.92 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=46.8
Q ss_pred eEEEEeEEEEECCCcccccccee--------------ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 33 AIECSNLNYSITKKQRKLVPILR--------------DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~--------------~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+++.|+.. ..+|+ |+++.+.+|+.++|+||+|||||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~e----r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANS----RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCS----BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCC----ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 47889999999864 35788 999999999999999999999999999999875
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=73.89 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=95.9
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHH---hhccCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVA---FGLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~---~~~~~~ 128 (263)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.-.....| ..+.|+.-+.. ...+...+. .+....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-----~~vl~~slE~~----~~~l~~R~~~~~~~i~~~ 258 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-----VGVGIYSLEMP----AAQLTLRMMCSEARIDMN 258 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCEEEEESSSC----HHHHHHHHHHHHTTCCTT
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEECCCC----HHHHHHHHHHHHcCCCHH
Confidence 457777756999999999999999999999777764432222 12333322210 001122111 111111
Q ss_pred -----CCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH----------
Q 024738 129 -----NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDE---------- 191 (263)
Q Consensus 129 -----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~---------- 191 (263)
.++..+ ..++.++++.+.-.+..-.....+|..+. .+.++.+. ++|+++++|..+.-...
T Consensus 259 ~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~ 335 (444)
T 2q6t_A 259 RVRLGQLTDRD-FSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQ 335 (444)
T ss_dssp TCCGGGCCHHH-HHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHH
T ss_pred HHhCCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHH
Confidence 122222 33444444444322221112346777665 34555555 58999999998754432
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCc-------------c------hhh-cCCEEEEEeC
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRL-------------E------ELE-YADGAFYMED 234 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~-------------~------~~~-~~d~v~~l~~ 234 (263)
.....+...|+.++++ .+++||+++|-- . .++ .||.|++|..
T Consensus 336 ~~i~~i~~~Lk~lAke-~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 336 QEIAAISRGLKALARE-LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp HHHHHHHHHHHHHHHH-HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1234666777777765 368999999821 1 133 5899999963
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-06 Score=75.25 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=31.2
Q ss_pred ceeceeeEEe---CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 53 ILRDCSFSVP---SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 53 iL~~vsl~i~---~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 4677777776 8999999999999999999999999887 65554
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-07 Score=76.95 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEE
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL---KPTNGHVYV 97 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~---~p~~G~I~~ 97 (263)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999765 677787765
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.1e-06 Score=74.04 Aligned_cols=30 Identities=33% Similarity=0.645 Sum_probs=27.1
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.+.++..+.|.||+|||||||++++++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999865
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-06 Score=79.67 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=32.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
+++.+++|+|++|||||||++.|+|...+.+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 457899999999999999999999988888887765
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-06 Score=71.07 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=29.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEEc
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG--HVYVK 98 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G--~I~~~ 98 (263)
.+|++++|+|++||||||++++|++.+++ .| .|.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 46899999999999999999999998765 45 44443
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-06 Score=74.71 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=67.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
.+.+|+.+++.||+||||||++.++........|. ......+++.|..... .++.+++....... ..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la-~q~~~~~~~~~~~~-~~-------- 138 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISA-VSVAERVAFERGEE-PG-------- 138 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHH-HHHHHHHHHTTTCC-TT--------
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHH-HHHHHHHHHHhccc-cC--------
Confidence 45679999999999999999887765321111111 1234566776642211 14445443221100 00
Q ss_pred HHHHHHcCC----Cccc---CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHH
Q 024738 140 AKALDAVGM----SNYL---QRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT-FLDESDQFGVIEAVKNL 204 (263)
Q Consensus 140 ~~~l~~~~l----~~~~---~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts-~LD~~~~~~l~~~l~~l 204 (263)
..+|. .... +..+--.+.|+..+.. ...+.+.+++++||.-. ++|.......++.+...
T Consensus 139 ----~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 139 ----KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp ----SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred ----ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 00111 1110 0112223556666653 33578999999999976 67777664444444443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=70.30 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.+..+.|.||+|+|||||++.+++...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35679999999999999999999876443
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.6e-05 Score=67.68 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.++..+.|.||.|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999999865
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.5e-06 Score=69.80 Aligned_cols=31 Identities=32% Similarity=0.602 Sum_probs=25.6
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
+.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34566777764 99999999999999999875
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-06 Score=71.84 Aligned_cols=40 Identities=25% Similarity=0.190 Sum_probs=34.6
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEEc
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG--HVYVK 98 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G--~I~~~ 98 (263)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 45788999999999999999999999999887777 55554
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.4e-06 Score=69.63 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999866433
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.1e-05 Score=71.70 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=28.0
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
.+++..+++.+| +.+|+|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 357788888885 99999999999999999886
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.81 E-value=4e-06 Score=68.40 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=31.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
...+|.+++|+|++||||||+.+.|+..+.+..+.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4467999999999999999999999998877666653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00024 Score=64.55 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=80.6
Q ss_pred cceeceeeE---EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCC
Q 024738 52 PILRDCSFS---VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNL 128 (263)
Q Consensus 52 ~iL~~vsl~---i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~ 128 (263)
+.|+.+ |. +++|+++.|.|++|+|||||...++.......+ .+.|+.-+.. +. ...
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~------~vlyid~E~s---~~-~~~---------- 107 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHA---LD-PIY---------- 107 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESSCC---CC-HHH----------
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC------eEEEEeCCCC---cc-HHH----------
Confidence 345555 33 889999999999999999999777654322222 2334433221 11 010
Q ss_pred CCChHHHHHHHHHHHHHcCCC--cc-cCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHH-----------
Q 024738 129 NLTHDEVRSKVAKALDAVGMS--NY-LQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLDES----------- 192 (263)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~l~--~~-~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD~~----------- 192 (263)
++.+|++ .+ ..+ +. +. .|-..+++.++ .+++++++|++++-....
T Consensus 108 --------------a~~~g~~~~~l~i~~-~~--~~--e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~ 168 (356)
T 1u94_A 108 --------------ARKLGVDIDNLLCSQ-PD--TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 168 (356)
T ss_dssp --------------HHHTTCCGGGCEEEC-CS--SH--HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------
T ss_pred --------------HHHcCCChhheeeeC-CC--CH--HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchh
Confidence 0111111 00 001 11 22 33445666664 689999999999876311
Q ss_pred --HHHHHHHHH---HHHHhcCCCcEEEEEccCcc----------------hhh-cCCEEEEEeCCEEEEe
Q 024738 193 --DQFGVIEAV---KNLLGDSGEVTALWVTHRLE----------------ELE-YADGAFYMEDGKIVMQ 240 (263)
Q Consensus 193 --~~~~l~~~l---~~l~~~~~~~tiiivtH~~~----------------~~~-~~d~v~~l~~G~i~~~ 240 (263)
..+.+.+.+ ..++++ .+++||+++|-.. .++ +||-++.+...+....
T Consensus 169 ~~q~r~~~~~l~~L~~~a~~-~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~ 237 (356)
T 1u94_A 169 GLAARMMSQAMRKLAGNLKQ-SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 237 (356)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeecc
Confidence 112233333 333443 3689999988432 233 5888888876654433
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.7e-06 Score=78.90 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=36.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
.+.+.|++..|+++ .++++++|+| +|+|++|+|||||++.|.|...+..|
T Consensus 17 ~v~~~~l~~~~~~k-----~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVHRK-----SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHHTH-----HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhCCe-----eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 68899999888753 4789999987 99999999999999999987655444
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=1e-05 Score=66.18 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=26.6
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=6.3e-06 Score=67.92 Aligned_cols=47 Identities=28% Similarity=0.466 Sum_probs=37.2
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEEcC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL--------LKPTNGHVYVKR 99 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~p~~G~I~~~~ 99 (263)
.+++++||..++++ ++|+|++|||||||++.+.+- ..++.+.+.+++
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 58999999988874 789999999999999999872 233456666655
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.78 E-value=2.8e-06 Score=75.48 Aligned_cols=55 Identities=22% Similarity=0.117 Sum_probs=43.4
Q ss_pred EEEeEEEEECCCccccccceec-eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 35 ECSNLNYSITKKQRKLVPILRD-CSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 35 ~~~nl~~~y~~~~~~~~~iL~~-vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
-.+++.+.|+.. .++ ++|+.+ |++++++|+||+||||++..|++.+.+..|+|.+
T Consensus 76 ~~~~l~~~~~~~-------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 76 VYDELSNLFGGD-------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHHTTCS-------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhccc-------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 345566666542 146 888876 9999999999999999999999999887777754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.77 E-value=2.2e-05 Score=65.63 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999987654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.1e-05 Score=66.66 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|+|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=3.4e-05 Score=62.92 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=20.4
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998877 678999999999999999997
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.4e-05 Score=66.29 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=5.2e-05 Score=70.55 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=29.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEEcCc
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK------------PTNGHVYVKRP 100 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~------------p~~G~I~~~~~ 100 (263)
.++|+|+||||||||++.|+|... |.+|.+.+++.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 799999999999999999999854 66788888764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=9.6e-05 Score=58.64 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.64 E-value=2.2e-05 Score=63.18 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.7e-05 Score=64.49 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=32.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
.+|.+|++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~---~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP---PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC---CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC---CCceEEEEEeCChHhC
Confidence 4678999999755 7888777777666542 2356788888887654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=2.7e-05 Score=71.74 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=32.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEEcC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL-----------LKPTNGHVYVKR 99 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~p~~G~I~~~~ 99 (263)
.+..|..++|+|+||+|||||++.|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567888999999999999999999998 667888887643
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.63 E-value=6.6e-05 Score=60.43 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|||||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.62 E-value=4.4e-06 Score=74.91 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=37.3
Q ss_pred cceeceeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 52 PILRDCSFSVPSGQL--WMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998755444
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=7.8e-06 Score=74.32 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=34.1
Q ss_pred cceeceeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCC
Q 024738 52 PILRDCSFSVPSGQL--WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999999864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.60 E-value=2.1e-05 Score=70.48 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.3e-05 Score=62.56 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.++|+|++|||||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 48999999999999999999975443
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.4e-05 Score=63.61 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.52 E-value=2.8e-05 Score=69.14 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
++.++++|| ...+++.....+.+.+.+.. ....+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~---~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS---GVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT---TTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC---CCceEEEEeCchhh
Confidence 567999999 78899998888888887753 23457777777764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.4e-05 Score=61.83 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=5.6e-05 Score=64.13 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
=.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999999999973
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.2e-05 Score=65.49 Aligned_cols=35 Identities=34% Similarity=0.611 Sum_probs=25.5
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++++++.+++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 456666666666 88999999999999999998753
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0008 Score=60.71 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+...+.|.||.|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456779999999999999999999764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0013 Score=55.79 Aligned_cols=27 Identities=41% Similarity=0.589 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
....-+.|.||.|+|||||++.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998854
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.40 E-value=3.7e-05 Score=62.88 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=23.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.+++|+|++|||||||++.|++.+++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999876543
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=3e-05 Score=66.52 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..-+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998543
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.39 E-value=5.3e-05 Score=69.21 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-------------hcCCEEEEEeCC
Q 024738 176 ACKVLLLDELTTFLD---ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-------------EYADGAFYMEDG 235 (263)
Q Consensus 176 ~p~llllDEPts~LD---~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-------------~~~d~v~~l~~G 235 (263)
.|.++++||-=.-++ +.....+.+.+++.++ .|..++++||++..+ +.|+..+++...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk--~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK--YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG--GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh--hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 588999999988884 6677777888887644 367899999999764 246777777654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.37 E-value=4.2e-05 Score=65.77 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=32.5
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK 98 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~ 98 (263)
++.+.+ ...++.++.|+|++||||||+.+.|+..+. .+.+.++
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~ 64 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIID 64 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEEC
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEe
Confidence 344444 567889999999999999999999998764 2344444
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=9.9e-05 Score=58.61 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=58.59 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998653
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0016 Score=59.27 Aligned_cols=137 Identities=20% Similarity=0.324 Sum_probs=75.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~ 139 (263)
-+++|+++.|.||.|+|||||...++.-.....+ .+.|+.-+.. +. ...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~------~vlyi~~E~s---~~-~~~--------------------- 118 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAEHA---LD-PVY--------------------- 118 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESSCC---CC-HHH---------------------
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC------eEEEEECCCC---hh-HHH---------------------
Confidence 4789999999999999999998665542211122 3344443321 11 110
Q ss_pred HHHHHHcCCC--cc-cCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC---H----------HHHHHHHHHH
Q 024738 140 AKALDAVGMS--NY-LQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLD---E----------SDQFGVIEAV 201 (263)
Q Consensus 140 ~~~l~~~~l~--~~-~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD---~----------~~~~~l~~~l 201 (263)
++.+|++ .. ..+ + -+ + .+-+.+++.++ .+++++|+|..++=.- . ...+.+.+.+
T Consensus 119 ---a~~~g~d~~~l~i~~-~--~~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~l 190 (366)
T 1xp8_A 119 ---ARALGVNTDELLVSQ-P--DN-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQAL 190 (366)
T ss_dssp ---HHHTTCCGGGCEEEC-C--SS-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHH
T ss_pred ---HHHcCCCHHHceeec-C--Cc-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHH
Confidence 1112221 11 111 1 12 2 24455666665 5799999999886541 0 1113344445
Q ss_pred HHH---HhcCCCcEEEEEccCcch----------------hh-cCCEEEEEeCCE
Q 024738 202 KNL---LGDSGEVTALWVTHRLEE----------------LE-YADGAFYMEDGK 236 (263)
Q Consensus 202 ~~l---~~~~~~~tiiivtH~~~~----------------~~-~~d~v~~l~~G~ 236 (263)
+++ +++ .+++||+++|-... ++ .||.++.+..++
T Consensus 191 r~L~~~a~~-~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 191 RKLTAILSK-TGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHHHTT-TCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHHH-cCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 444 444 46888888885321 23 488888887554
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0037 Score=55.54 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455779999999999999999999865
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=58.50 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998743
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0026 Score=59.93 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=74.0
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC-CCCCCceEEEEcCceEEEecCCCCcccccCHHHHH-HhhccCCCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG-LLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADV-AFGLGNLNL 130 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G-l~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~-~~~~~~~~~ 130 (263)
-|+.+---+.+|+++.|.|+.|+|||||+--++- .... .| ..+.|+.-+.. ...+...+ .... ....
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g-----~~vl~~s~E~s----~~~l~~r~~~~~~-~~~~ 299 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MG-----KKVGLAMLEES----VEETAEDLIGLHN-RVRL 299 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SC-----CCEEEEESSSC----HHHHHHHHHHHHT-TSCC
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-cC-----CcEEEEeccCC----HHHHHHHHHHHHc-CCCh
Confidence 4555543589999999999999999999755543 3322 12 12333332211 00122221 1111 1111
Q ss_pred Ch------HHH-HHHHHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC--------H
Q 024738 131 TH------DEV-RSKVAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLD--------E 191 (263)
Q Consensus 131 ~~------~~~-~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD--------~ 191 (263)
.. ... .+...++.+.+ ...-+....+.+++-.+ -+..++.+. .+|+++++|= ...+. .
T Consensus 300 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~--i~~~i~~~~~~~~~~lvVID~-l~~l~~~~~~~~~~ 376 (503)
T 1q57_A 300 RQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDH-ISIVVSASGESDER 376 (503)
T ss_dssp TTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHH--HHHHHHHHHHTTCCSEEEEEC-TTCCCSCCSCCCHH
T ss_pred hhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHH--HHHHHHHHHHhcCCCEEEEcc-chhcCCCCCCCCHH
Confidence 10 000 01111122222 11112222333345443 344445544 4799999994 33332 1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEccCc
Q 024738 192 SDQFGVIEAVKNLLGDSGEVTALWVTHRL 220 (263)
Q Consensus 192 ~~~~~l~~~l~~l~~~~~~~tiiivtH~~ 220 (263)
....++...|+.++++ .+++||+++|--
T Consensus 377 ~~~~~~~~~Lk~lak~-~~i~vi~~~q~~ 404 (503)
T 1q57_A 377 KMIDNLMTKLKGFAKS-TGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHHHHHHH-HTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHH-HCCeEEEEEcCC
Confidence 2334567777777765 468999998843
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00014 Score=60.66 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=56.71 Aligned_cols=19 Identities=37% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVL 84 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i 84 (263)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=58.69 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999997643
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=4.5e-05 Score=63.06 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
+++|.|++||||||+++.|+..+.+....|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998775433333
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00022 Score=58.24 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00043 Score=59.91 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=77.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEEcCceEEEecCCCCccccc-CHHHHHH--hhc-cC---
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKP-----------TNGHVYVKRPKSFVFQNPDHQVVMP-TVEADVA--FGL-GN--- 127 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~~~~~~v~q~~~~~~~~~-tv~~~~~--~~~-~~--- 127 (263)
.++|+|++|||||||++.++|...+ ..|.+.+.+....+.+.|..+.+.. +..+.+. +.. ..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 84 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADV 84 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcE
Confidence 4899999999999999999997531 1233444454555666665443332 2222111 000 00
Q ss_pred ----CCCCh-HHHHHHHHHHHHHcC-CC-----cccC----CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 024738 128 ----LNLTH-DEVRSKVAKALDAVG-MS-----NYLQ----RPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192 (263)
Q Consensus 128 ----~~~~~-~~~~~~~~~~l~~~~-l~-----~~~~----~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~ 192 (263)
..... ........++. ..+ .. ...| +....-....++++ +.+++ |+|+.+..
T Consensus 85 vi~v~D~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~----~~Sa~~g~ 151 (271)
T 3k53_A 85 IVDIVDSTCLMRNLFLTLELF-EMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVI----PTNAKKGE 151 (271)
T ss_dssp EEEEEEGGGHHHHHHHHHHHH-HTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEE----ECBGGGTB
T ss_pred EEEEecCCcchhhHHHHHHHH-hcCCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEE----EEEeCCCC
Confidence 00111 11111122222 223 21 0111 11222233333333 23444 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEccCcchhh-cCCEE
Q 024738 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEELE-YADGA 229 (263)
Q Consensus 193 ~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~-~~d~v 229 (263)
+..++++.+.+..... ..+..+.+|..+.++ .++++
T Consensus 152 gi~~l~~~i~~~~~~~-~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 152 GVEELKRMIALMAEGK-VTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp THHHHHHHHHHHHHTC-CCCCCCCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-ccCCCCCcCCCHHHHHHHHHH
Confidence 9999999998876542 334456677766553 34443
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00018 Score=61.89 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00014 Score=58.74 Aligned_cols=26 Identities=38% Similarity=0.301 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++.++.|+|++||||||+.+.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999843
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00019 Score=57.63 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0033 Score=67.26 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=27.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
+++|+++.|.||+|+|||||+..++.......|
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~ 761 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 761 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 899999999999999999999888776543333
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00029 Score=57.68 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0012 Score=59.29 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.9
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 59 FSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 59 l~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
--+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3678889999999999999999988875
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00029 Score=56.93 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.006 Score=56.88 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
++.+++++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999998877654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00026 Score=58.50 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999887543
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00061 Score=63.63 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=28.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
+-|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35666554589999999999999999999765554
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00031 Score=56.07 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00045 Score=62.88 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC-----------CCCCCceEEEEcC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAG-----------LLKPTNGHVYVKR 99 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~G-----------l~~p~~G~I~~~~ 99 (263)
|-.++|+|.+|+|||||++.|+| -+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3456778777643
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00029 Score=57.52 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999985
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00034 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00036 Score=56.63 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00037 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00022 Score=62.34 Aligned_cols=43 Identities=30% Similarity=0.492 Sum_probs=33.4
Q ss_pred ceeceeeEEeCC-----------CEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 53 ILRDCSFSVPSG-----------QLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 53 iL~~vsl~i~~G-----------e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
+++.+...+..+ ..+.|.||+|+|||||+++|++...+..|.+
T Consensus 25 ~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 25 AIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp HHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 455555555543 5899999999999999999999887766644
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00031 Score=61.69 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=27.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEc
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVK 98 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~ 98 (263)
-..|.++.|.||+||||||+.+.|+.-++ .|.+.++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is 65 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID 65 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence 34578999999999999999999986442 2445443
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0004 Score=56.11 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+.+++|+|+.||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998753
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00041 Score=57.11 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
..+|.+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999854
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0034 Score=56.60 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..-+.|.||.|+|||||.+.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344558899999999999999999865
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00016 Score=58.91 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..+.+++|+|+.||||||+.+.|+..+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998644
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00034 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0033 Score=55.65 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..-+.|.||.|+|||+|++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345679999999999999999998753
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00044 Score=56.67 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00046 Score=55.63 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00031 Score=57.19 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999887653
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0042 Score=48.29 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
+..+|++||. ..|++..+..+.+.+.+.. ..+..+|.+|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~--~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAE--RCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHT--TTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCC--CCCEEEEEecC
Confidence 4578999996 4678888888888887642 12345666665
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0013 Score=53.17 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHH-hCC----CCCCce
Q 024738 66 LWMLLGPNGCGKSTLLKVL-AGL----LKPTNG 93 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i-~Gl----~~p~~G 93 (263)
.++|+|++|||||||++.+ .+. ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 4889999999999999654 444 456655
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0094 Score=63.87 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=27.1
Q ss_pred ceeceeeE---EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 53 ILRDCSFS---VPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 53 iL~~vsl~---i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-|+.+ +. +++|.++.|.||.|+|||||.--++.-
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45555 34 889999999999999999998665543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00063 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.++|+|+.|||||||++.+++-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999864
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00082 Score=56.00 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998644
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00071 Score=58.97 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0024 Score=60.28 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=55.6
Q ss_pred CCCCCCChHHHHHHHHHHH--Hhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 024738 154 RPVQTLSGGQKQRVAIAGA--LAE---------------ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWV 216 (263)
Q Consensus 154 ~~~~~LSgGqkqRv~lAra--l~~---------------~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiiv 216 (263)
+..+.+||||+|-.-+|.+ ++. .-.++++||. +-+|....+..+++++++ |.-+|++
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l-----glQliia 448 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL-----DMQLLIA 448 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT-----TCEEEEE
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc-----CCEEEEE
Confidence 3467899999997444443 322 2357999999 999999999999999987 4677888
Q ss_pred ccCcchhhcCCEEEEEe
Q 024738 217 THRLEELEYADGAFYME 233 (263)
Q Consensus 217 tH~~~~~~~~d~v~~l~ 233 (263)
|=+ ....++|.++.+-
T Consensus 449 tP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 449 APE-NISPERGTTYKLV 464 (483)
T ss_dssp ESS-SCCCSSSEEEECC
T ss_pred Ccc-hhhhccCceEEEE
Confidence 877 3336788888775
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00072 Score=56.68 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0008 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.|-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999864
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00097 Score=54.67 Aligned_cols=27 Identities=44% Similarity=0.477 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+-+++|+|+.||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998643
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00062 Score=54.75 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999986
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00085 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0025 Score=54.88 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00066 Score=53.05 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998854
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00087 Score=54.07 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00072 Score=52.77 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|||||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00085 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00098 Score=52.96 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00076 Score=53.58 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00084 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0083 Score=55.83 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=35.4
Q ss_pred HHHHHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH--hcCCCcEEEEEccCcchh
Q 024738 168 AIAGALAEACKVLLLDELTTF----------LDESDQFGVIEAVKNLL--GDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 168 ~lAral~~~p~llllDEPts~----------LD~~~~~~l~~~l~~l~--~~~~~~tiiivtH~~~~~ 223 (263)
.+..|-...|.+|++||--+- -|......+..+|..+- ....+..||.+|++++.+
T Consensus 266 ~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 344555678999999997532 23444445556666552 122346789999988765
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00092 Score=52.37 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00082 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+.-.++|+|+.|||||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999874
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00077 Score=56.27 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998643
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0031 Score=59.51 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.+..-+.|.||+|+|||+|++.|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00087 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999888753
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00075 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00088 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00098 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
...+++|.|+.||||||+.+.|+-.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998543
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00087 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|||||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00093 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00092 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0009 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00094 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999888643
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=57.01 Aligned_cols=25 Identities=44% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00097 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999887743
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00089 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
--.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999853
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00098 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.001 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|||||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=58.26 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=30.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
..+++..+.+ .|.-++|+|+||+|||||...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888888 788999999999999999988887
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00065 Score=54.10 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
+.-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999875
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00089 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.015 Score=63.29 Aligned_cols=137 Identities=19% Similarity=0.298 Sum_probs=78.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~ 140 (263)
+++|.++.|.||.|+|||||+..++.-.....+ .+.|+.-+.. .. .++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~------~vlyis~E~s---~~-~~~---------------------- 427 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHA---LD-PIY---------------------- 427 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC------CEEEECTTSC---CC-HHH----------------------
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC------eEEEEEcCCC---HH-HHH----------------------
Confidence 899999999999999999998666554332222 2333333221 00 111
Q ss_pred HHHHHcCCC--cc-cCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHH
Q 024738 141 KALDAVGMS--NY-LQRPVQTLSGGQKQRVAIAGALA--EACKVLLLDELTTFLD-E------------SDQFGVIEAVK 202 (263)
Q Consensus 141 ~~l~~~~l~--~~-~~~~~~~LSgGqkqRv~lAral~--~~p~llllDEPts~LD-~------------~~~~~l~~~l~ 202 (263)
++.+|++ .+ ... ..+. .|-+.+++.++ .+|+++++|.-.+-.. . ...+.+...++
T Consensus 428 --a~~lGvd~~~L~I~~---~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr 500 (2050)
T 3cmu_A 428 --ARKLGVDIDNLLCSQ---PDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 500 (2050)
T ss_dssp --HHHTTCCTTTCEEEC---CSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred --HHHcCCCHHHeEEeC---CCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHH
Confidence 1112221 11 111 1233 33456666664 5799999999876542 1 12233445555
Q ss_pred HH---HhcCCCcEEEEEccCcch----------------hh-cCCEEEEEeCCEE
Q 024738 203 NL---LGDSGEVTALWVTHRLEE----------------LE-YADGAFYMEDGKI 237 (263)
Q Consensus 203 ~l---~~~~~~~tiiivtH~~~~----------------~~-~~d~v~~l~~G~i 237 (263)
.+ +++ .+++||+++|-... ++ .||.++.|+..+.
T Consensus 501 ~L~~lake-~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 501 KLAGNLKQ-SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp HHHHHHHT-TTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHH-cCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 54 444 47899999884322 33 4888888876553
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=54.40 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-+++|+|+.||||||+.+.++-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=53.19 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999854
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=56.24 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997743
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00099 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998875
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=58.01 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998754
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998863
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3799999999999999999874
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=51.54 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0019 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345778999999999999999998764
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0007 Score=59.58 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999875
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++-+++|+||.||||||+.+.|+-.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=57.49 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-+++|+|+.|||||||++.+.|-.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999953
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0012 Score=53.80 Aligned_cols=22 Identities=50% Similarity=0.732 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|||||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=56.87 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|+|++|+|||||++.|.|--
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999988753
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=57.01 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.-+++|+|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=59.81 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.022 Score=52.47 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=39.3
Q ss_pred HHHHhhCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH--hcCCCcEEEEEccCcchhh-------cCCEEE
Q 024738 170 AGALAEACKVLLLDELTTFL----------DESDQFGVIEAVKNLL--GDSGEVTALWVTHRLEELE-------YADGAF 230 (263)
Q Consensus 170 Aral~~~p~llllDEPts~L----------D~~~~~~l~~~l~~l~--~~~~~~tiiivtH~~~~~~-------~~d~v~ 230 (263)
..|-...|.+|++||--+-. |......+..+|.++- ....+..||.+|++++.+. ..|+.+
T Consensus 235 ~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 235 VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKI 314 (405)
T ss_dssp HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEE
T ss_pred HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEE
Confidence 34445679999999965432 3344445556665542 1234567899999887642 357666
Q ss_pred EEe
Q 024738 231 YME 233 (263)
Q Consensus 231 ~l~ 233 (263)
.+.
T Consensus 315 ~i~ 317 (405)
T 4b4t_J 315 EFP 317 (405)
T ss_dssp ECC
T ss_pred EcC
Confidence 653
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0017 Score=51.48 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.-.++++|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998743
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.012 Score=51.54 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 176 ACKVLLLDELTTFLD-ESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 176 ~p~llllDEPts~LD-~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
+++++++||.- .|. ......+...+.+... +..+|++|++...+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~---~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSS---NCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGG---GCEEEEEESSGGGS
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCC---CcEEEEEeCCcccc
Confidence 78999999984 344 6667777777776532 35788888877643
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=53.94 Aligned_cols=29 Identities=41% Similarity=0.513 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
-+|.+++|.|+.||||||+++.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0017 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0015 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999988643
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0018 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0018 Score=52.05 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0017 Score=55.17 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=22.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..+|.+++|.|+.||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987653
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|-+++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997644
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.002 Score=60.53 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
.+++.+ +.+-+|+..+|+|++|+|||||++.|+.......+.|
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 366666 7788999999999999999999999987654333444
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0016 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998875
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=55.38 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
-.++++|.+|+|||||++.+.|-.....|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 48999999999999999999997654433
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0024 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999954
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.27 E-value=0.002 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999888753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0017 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999873
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0013 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.++|+|+.|||||||++.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=52.48 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=55.70 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=51.51 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0017 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0025 Score=54.45 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987654
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0022 Score=51.53 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999998753
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0022 Score=52.31 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=50.64 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..+..+.|.||.|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987653
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0022 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0027 Score=58.62 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.-.+..++.|+|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999998764
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0031 Score=53.06 Aligned_cols=26 Identities=42% Similarity=0.530 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.++.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=52.82 Aligned_cols=25 Identities=40% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0021 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.++|+|+.|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999888754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0028 Score=53.25 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.++++-|+.||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.002 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0021 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0021 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999884
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0029 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998854
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0025 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0024 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0021 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999987754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0022 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0025 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=57.08 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999988653
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0025 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
=.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.002 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0023 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0036 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
=.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998864
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=52.20 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.00083 Score=57.52 Aligned_cols=33 Identities=36% Similarity=0.647 Sum_probs=26.0
Q ss_pred eeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 54 LRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 54 L~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.++.+..+.| +.|.||+|+|||||++.++...
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 44455555666 7799999999999999999843
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0035 Score=52.82 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=26.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.+|.++++-|+.||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987765
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.+++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999997653
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0035 Score=55.95 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998754
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0031 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999887753
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0026 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0035 Score=56.44 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++.+++|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 55689999999999999999999865
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0035 Score=55.41 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999999977764
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0038 Score=52.94 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.+|.++++.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0027 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0021 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999988643
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0035 Score=63.00 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
.+-..+.|.||+|+|||+|.+.|+.......+.+..-..-.+.........+.....
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~----------------------- 642 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPG----------------------- 642 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCC-----------------------
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-----------CC
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDS-----------GE 210 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~-----------~~ 210 (263)
+.|.++.+......-...+.+|++||. ..+++.....+++.|.+- . ++
T Consensus 643 -----------------~~G~~~~g~l~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~l~~~---~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 643 -----------------YVGYEEGGQLTEAVRRRPYSVILFDEI-EKAHPDVFNILLQILDDG---RLTDSHGRTVDFRN 701 (854)
T ss_dssp -------------------------CHHHHHHHCSSEEEEESSG-GGSCHHHHHHHHHHHTTT---EECCSSSCCEECTT
T ss_pred -----------------CcCccccchHHHHHHhCCCeEEEEecc-cccCHHHHHHHHHHhccC---ceECCCCCEeccCC
Q ss_pred cEEEEEcc
Q 024738 211 VTALWVTH 218 (263)
Q Consensus 211 ~tiiivtH 218 (263)
..||++|+
T Consensus 702 ~iiI~tsn 709 (854)
T 1qvr_A 702 TVIILTSN 709 (854)
T ss_dssp EEEEEECC
T ss_pred eEEEEecC
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0038 Score=55.90 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999865
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0031 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999763
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0051 Score=51.38 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=28.7
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..++..-+.+ .|..++|+||+|||||||...|+.-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566666665 57889999999999999998887643
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0038 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0042 Score=51.80 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0035 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..|+|||||++.++|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999965
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0031 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0039 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++|+.|+|||||++.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0054 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988643
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.012 Score=63.87 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=30.8
Q ss_pred ccceecee--eEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 51 VPILRDCS--FSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 51 ~~iL~~vs--l~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
.+.|+++. .-+++|+++.|.||.|||||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45788887 579999999999999999999998766
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0035 Score=58.42 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|++|+|||||++.|+|
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 699999999999999999988
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0035 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0036 Score=52.84 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+.+..++.|+||.||||+|..+.|+--
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4466778999999999999999999853
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0027 Score=54.48 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998766
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0019 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.+++-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0053 Score=47.78 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
..+.-+.|.||.|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45667899999999999999999886543
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0069 Score=50.62 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHhhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch----------hh-cCCEEEEEe
Q 024738 172 ALAEACKVLLLDELTT----FLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE----------LE-YADGAFYME 233 (263)
Q Consensus 172 al~~~p~llllDEPts----~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~----------~~-~~d~v~~l~ 233 (263)
+-..+|+++++|--+. .-|.....++...|+.++++ .++++++++|-... .+ .||-|+.|.
T Consensus 131 ~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~-~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 131 VKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHH-cCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 3456899999995431 11445556677777777765 46899999885321 23 489998885
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.81 E-value=0.001 Score=61.88 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=26.7
Q ss_pred eEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 59 FSVPSG--QLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 59 l~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
|.+.++ .+++++|++|+||||++..|++.+...
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 444544 599999999999999999999987543
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0042 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.++|+|..|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999998877643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0057 Score=49.95 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=35.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcc-----------hhhcCCEEEEEe
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLE-----------ELEYADGAFYME 233 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~-----------~~~~~d~v~~l~ 233 (263)
.+++++++||--. +++. +.+.|+.++.. +..|+++.++.+ .+++||.+.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~--~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDR--GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHT--TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHC--CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999743 5543 44555555543 578888888655 234699987775
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.017 Score=57.03 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDA 145 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (263)
.+.|.||+|+|||+|.+.|+.........+..-..-.|.......
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----------------------------------- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----------------------------------- 567 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-----------------------------------
Q ss_pred cCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH--------HHhcCCCcEEEEEc
Q 024738 146 VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN--------LLGDSGEVTALWVT 217 (263)
Q Consensus 146 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~--------l~~~~~~~tiiivt 217 (263)
........--..+.+|++||- ..+++.....+++.+.+ ......+..+|++|
T Consensus 568 -------------------~~~l~~~~~~~~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -------------------GGQLTEKVRRKPYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp ----------------------CHHHHHHCSSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -------------------cchhhHHHHhCCCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Q ss_pred c-----------------CcchhhcCCEEEEEe
Q 024738 218 H-----------------RLEELEYADGAFYME 233 (263)
Q Consensus 218 H-----------------~~~~~~~~d~v~~l~ 233 (263)
+ +.+++..+|.++.+.
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0031 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~G 86 (263)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999865
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0049 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.71 E-value=0.002 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988875
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0043 Score=50.62 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999998764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0053 Score=50.75 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999988764
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0064 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+++|+||+|||||||...|+.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0047 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988874
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0068 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999988664
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0066 Score=49.16 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=31.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcch
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE 222 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~ 222 (263)
.++.++++||. ..+++.....+...+.+. ..+..+|++|+....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY---SKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc---CCCCeEEEEeCChhh
Confidence 36889999995 557777777777777653 224567777777654
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0058 Score=49.93 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.008 Score=52.23 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++..+.|.||.|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999888765
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.051 Score=46.25 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=37.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccC---------c--chhhcCCEEEEEe
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHR---------L--EELEYADGAFYME 233 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~---------~--~~~~~~d~v~~l~ 233 (263)
.+.+++++||---..| ..++.+.+.+ .|+.||+..++ . +++++||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~-----~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN-----AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH-----TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh-----CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 4444444443 36799999999 2 2347899998775
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0027 Score=54.06 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=26.9
Q ss_pred HHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 024738 171 GALAEACKVLLLDELTTF-LDESDQFGVIEAVKNLLGDSGEVTALWVTH 218 (263)
Q Consensus 171 ral~~~p~llllDEPts~-LD~~~~~~l~~~l~~l~~~~~~~tiiivtH 218 (263)
.++..+|+++|+|||-.- .+.......++.+..... .|..++.++|
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~--sgidVitT~N 125 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA--AGIDVYTTVN 125 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH--TTCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc--CCCCEEEEcc
Confidence 334468999999998642 332222223333333332 3578888888
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0091 Score=49.77 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.012 Score=48.03 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=25.3
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++..-+. -.|.-+.|.|++|+|||||.-.+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45555555 4577899999999999999877654
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0048 Score=57.53 Aligned_cols=36 Identities=33% Similarity=0.591 Sum_probs=28.2
Q ss_pred eceeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCC
Q 024738 55 RDCSFSVPSGQL--WMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 55 ~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
+.+.-.+..|.+ +.|.||.|+|||||+++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444445556664 899999999999999999987643
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
-.++++|.+|+|||||+|.|.|-..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999999653
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0091 Score=55.02 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++|.||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999887543
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.01 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+..+.|.||.|+|||||++.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999866
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0097 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..-+++|+|+.|+|||||++.+++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999999887653
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.01 Score=53.19 Aligned_cols=26 Identities=42% Similarity=0.681 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++..+.|.||+|+||||+.+.|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999876
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.009 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|+|||||++.++|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0098 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+...+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999885
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0094 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..++|||||++.++|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999864
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.013 Score=51.65 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+..+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999987553
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.012 Score=52.53 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=25.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.+|..+.|.||.|+|||||++.++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45678999999999999999999987653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.0036 Score=50.93 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988765
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.014 Score=51.18 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.|.++.|.||.|+|||||++.++...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 36899999999999999999987643
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.012 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+..+.|.||.|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+...+.|.||.|+|||+|.+.|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33568888999999999999999765
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.017 Score=49.24 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=25.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
..+..+.|.||.|+|||+|.+.|+......
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 345678899999999999999999876543
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0067 Score=50.03 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHH-HhCC
Q 024738 66 LWMLLGPNGCGKSTLLKV-LAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~-i~Gl 87 (263)
.++|+|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 6553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 263 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-51 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-49 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-49 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-47 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-43 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-43 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-42 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-41 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-41 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-41 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-41 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-41 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-39 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-37 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-37 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-37 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-34 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-20 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 2e-04 | |
| d1nksa_ | 194 | c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu | 3e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.002 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 166 bits (421), Expect = 2e-51
Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 19/229 (8%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
V ++ NL K+ + + ++ G+ +LLGP+GCGK+T L+++AGL +PT
Sbjct: 5 VEVKLENLT-----KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 59
Query: 92 NGHVYV-----------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
G +Y R S VFQ+ M TV ++AF L DE+ +V
Sbjct: 60 EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVR 118
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
A + + + L R LSGGQ+QRVA+A A+ VLL+DE + LD + +
Sbjct: 119 WAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 201 VKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
+K L VT ++VTH E + D M G+++ +
Sbjct: 179 IKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 161 bits (409), Expect = 1e-49
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 20/232 (8%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ SN+ + R + L + S VP+GQ++ ++G +G GKSTL++ + L +PT G
Sbjct: 2 IKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 94 HVYV----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137
V V +R +FQ+ + + TV +VA L N DEV+
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHF-NLLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGV 197
+V + L VG+ + LSGGQKQRVAIA ALA KVLL DE T+ LD + +
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 198 IEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
+E +K++ G +T L +TH ++ D + +G+++ Q + +
Sbjct: 180 LELLKDINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 160 bits (405), Expect = 3e-49
Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 24/228 (10%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ N+ + + + L++ + ++ G+ ++GP+G GKST+L ++ L KPT G
Sbjct: 2 IKLKNVTKTYKMGEEI-IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 94 HVYV-----------KRPK------SFVFQNPDHQVVMPTVEADVAFGL---GNLNLTHD 133
VY+ + K FVFQ + ++ T +V L ++ +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL-TALENVELPLIFKYRGAMSGE 119
Query: 134 EVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDES 192
E R + + L + + LSGGQ+QRVAIA ALA ++L D+ T LD
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179
Query: 193 DQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
+++ +K L + G T + VTH + + + Y++DG++ +
Sbjct: 180 TGEKIMQLLKKLNEEDG-KTVVVVTHDINVARFGERIIYLKDGEVERE 226
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 157 bits (397), Expect = 2e-47
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 8/193 (4%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQ 111
P+L++ + ++ G++ + G G GK++LL ++ G L+ + G + SF Q
Sbjct: 50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS--W 107
Query: 112 VVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPV----QTLSGGQKQRV 167
++ T++ ++ FG+ + V D + + TLSGGQ+ R+
Sbjct: 108 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARI 167
Query: 168 AIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYAD 227
++A A+ + + LLD +LD + V E+ L T + VT ++E L AD
Sbjct: 168 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL--MANKTRILVTSKMEHLRKAD 225
Query: 228 GAFYMEDGKIVMQ 240
+ G
Sbjct: 226 KILILHQGSSYFY 238
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 146 bits (370), Expect = 1e-43
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 28/226 (12%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I+ ++++ + PIL+D + S+ G+ +G +G GKSTL+ ++ T+G
Sbjct: 17 IDIDHVSFQYNDNEA---PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 94 HVYV------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS--KV 139
+ + R + + Q D+ + TV+ ++ G T +EV K+
Sbjct: 74 QILIDGHNIKDFLTGSLRNQIGLVQQ-DNILFSDTVKENILLGR--PTATDEEVVEAAKM 130
Query: 140 AKALDAV-----GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
A A D + G + LSGGQKQR++IA +L+LDE T+ LD +
Sbjct: 131 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 190
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
+ EA+ L D T L V HRL + +AD +E+G IV
Sbjct: 191 SIIQEALDVLSKD---RTTLIVAHRLSTITHADKIVVIENGHIVET 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 146 bits (369), Expect = 2e-43
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+E N+ ++ ++ VP LR+ + +P+G+ L+G +G GKST+ ++
Sbjct: 13 DLEFRNVTFTYPGRE---VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 69
Query: 93 GHVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV 139
GH+ + + + V QN + E +++
Sbjct: 70 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV-ANNIAYARTEEYSREQIEEAARM 128
Query: 140 AKALDAV-----GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
A A+D + G+ + LSGGQ+QR+AIA AL +L+LDE T+ LD +
Sbjct: 129 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
+ A+ L + T+L + HRL +E AD +EDG IV +
Sbjct: 189 RAIQAALDELQKN---RTSLVIAHRLSTIEQADEIVVVEDGIIVER 231
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 141 bits (357), Expect = 6e-42
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
A+ +L I KK+ IL+ SF + G+++ L+GPNG GK+T L++++ L+KP++
Sbjct: 2 AVVVKDLRKRIGKKE-----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 56
Query: 93 GHVYV------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
G V V ++ S++ + M + F G + E+ V
Sbjct: 57 GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM-QGIEYLRFVAGFYASSSSEIEEMVE 115
Query: 141 KALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEA 200
+A + G+ ++ V T S G +++ IA AL ++ +LDE T+ LD + V +
Sbjct: 116 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 175
Query: 201 VKNLLGDSGEVTALWVTHRLEELE-YADGAFYMEDGKIVMQADGVSILNFIKSR 253
+K + +T L +H + E+E D + +G IV + K++
Sbjct: 176 LKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 227
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 140 bits (354), Expect = 1e-41
Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
++ N+ + + V + +D + + G+ + +GP+GCGKSTLL+++AGL T+G
Sbjct: 1 VQLQNVTKAWGE-----VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 55
Query: 94 HVYV-----------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142
+++ +R VFQ+ + E +++FGL + + +V +
Sbjct: 56 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAE-NMSFGLKLAGAKKEVINQRVNQV 114
Query: 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202
+ + +++ L R + LSGGQ+QRVAI L V LLDE + LD + + + +
Sbjct: 115 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 203 NLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
L G T ++VTH E + AD ++ G++ + + +
Sbjct: 175 RLHKRLGR-TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 140 bits (354), Expect = 2e-41
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 25/234 (10%)
Query: 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92
+ ++ K V +R+ S V G+ +LLGP+GCGK+T L+++AGL +P+
Sbjct: 3 GVRLVDVW-----KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR 57
Query: 93 GHVYV-----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135
G +Y+ R + VFQ+ M + ++AF L + E+
Sbjct: 58 GQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYD-NIAFPLKLRKVPRQEI 116
Query: 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195
+V + + +G++ L R + LSGGQ+QRVA+ A+ +V L+DE + LD +
Sbjct: 117 DQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 196 GVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
+ +K L G VT ++VTH E + D M G + + +
Sbjct: 177 RMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 139 bits (352), Expect = 3e-41
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 28/226 (12%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
I N+ + IL + + S+ G++ ++G +G GKSTL K++ P NG
Sbjct: 2 ITFRNIRFRYKPDSP---VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 94 HVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVA 140
V + +R V Q+ ++ ++ +++ +++ +K+A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDN--VLLNRSIIDNISLANPGMSVEKVIYAAKLA 116
Query: 141 KALDAVGM------SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQ 194
A D + + ++ LSGGQ+QR+AIA AL K+L+ DE T+ LD +
Sbjct: 117 GAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175
Query: 195 FGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
++ + + T + + HRL ++ AD ME GKIV Q
Sbjct: 176 HVIMRNMHKICKG---RTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 218
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 139 bits (352), Expect = 3e-41
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 24/224 (10%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ +++++ + ILRD SF + GP+G GKST+ +L +PT G
Sbjct: 2 LSARHVDFAYDDSE----QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57
Query: 94 HVYV-----------KRPKSFVFQNPDHQVVMPTVEADVAFGL-GNLNLTHDEVRSKVAK 141
+ + F + D ++ T+ ++ +GL G+ +A
Sbjct: 58 EITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF 117
Query: 142 ALDAV-----GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196
A V ++ + +SGGQ+QR+AIA A K+L+LDE T LD +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 197 VIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQ 240
V +A+ +L+ T L + HRL + AD +++E G+I
Sbjct: 178 VQKALDSLMKGR---TTLVIAHRLSTIVDADKIYFIEKGQITGS 218
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (351), Expect = 6e-41
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 29/241 (12%)
Query: 19 SIHPSRIDGIESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKS 78
+ P ++G ++ +++++ R V +L+ +F++ G++ L+GPNG GKS
Sbjct: 2 LLTPLHLEG-----LVQFQDVSFAY--PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKS 54
Query: 79 TLLKVLAGLLKPTNGHVYV-------------KRPKSFVFQNPDHQVVMPTVEADVAFGL 125
T+ +L L +PT G + + R + V Q P QV +++ ++A+GL
Sbjct: 55 TVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP--QVFGRSLQENIAYGL 112
Query: 126 GNLNLTHDEVRSKVAKALDAV------GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKV 179
+ + V + G + LSGGQ+Q VA+A AL V
Sbjct: 113 TQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCV 172
Query: 180 LLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVM 239
L+LD+ T+ LD + Q V + + + L +T L +E AD ++E G I
Sbjct: 173 LILDDATSALDANSQLQVEQLLYESPERYS-RSVLLITQHLSLVEQADHILFLEGGAIRE 231
Query: 240 Q 240
Sbjct: 232 G 232
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 137 bits (345), Expect = 5e-40
Identities = 62/247 (25%), Positives = 96/247 (38%), Gaps = 36/247 (14%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ N+ K L S SV G + +++GPNG GKSTL+ V+ G LK G
Sbjct: 5 LRTENIV-----KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG 59
Query: 94 HVYV--------------KRPKSFVFQNPDHQVVMPTVEADVAFG-------------LG 126
VY FQ P + TV ++ G
Sbjct: 60 RVYFENKDITNKEPAELYHYGIVRTFQTP-QPLKEMTVLENLLIGEICPGESPLNSLFYK 118
Query: 127 NLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186
+E+ K K L+ + +S+ R LSGGQ + V I AL K++++DE
Sbjct: 119 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 178
Query: 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVS 245
+ + V L +T L + HRL+ L Y D + M +G+I+ + G
Sbjct: 179 AGVAPGLAHDIFNHVLELKAKG--ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236
Query: 246 ILNFIKS 252
+ + S
Sbjct: 237 EIKNVLS 243
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 136 bits (343), Expect = 1e-39
Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 35/243 (14%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+ +L+ +L+ S +G + ++G +G GKST L+ + L KP+ G
Sbjct: 3 LHVIDLHKRYGG-----HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 57
Query: 94 HVYV--------------------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGN 127
+ V + + VFQ+ + M +E + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV 117
Query: 128 LNLTHDEVRSKVAKALDAVGMSNYLQ-RPVQTLSGGQKQRVAIAGALAEACKVLLLDELT 186
L L+ + R + K L VG+ Q + LSGGQ+QRV+IA ALA VLL DE T
Sbjct: 118 LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 187 TFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVS 245
+ LD V+ ++ L + T + VTH + + ++ GKI + D
Sbjct: 178 SALDPELVGEVLRIMQQLAEEG--KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 246 ILN 248
+
Sbjct: 236 VFG 238
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 129 bits (325), Expect = 1e-37
Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
+E +L+ K P+L + ++ G + GPNG GK+TLLK ++ LKP G
Sbjct: 3 LEIRDLSVGYDK------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 56
Query: 94 HVYV-----KRPKSFVFQNPDHQVVMP--TVEADVAFGLGNLNLTHDEVRSKVAKALDAV 146
+ + K +F P+ +V +VE + + + ++++ AL++V
Sbjct: 57 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESV 114
Query: 147 GMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206
+ + ++ + LS G +RV +A L ++ +LD+ +DE + V++++ +L
Sbjct: 115 EVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK 173
Query: 207 DSGEVTALWVTHRLEELEYAD 227
+ G + + EL Y D
Sbjct: 174 EKG-IVIISSRE---ELSYCD 190
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 130 bits (327), Expect = 2e-37
Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 21/233 (9%)
Query: 30 SGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89
S + +E +L+ ++ VP GQ+ L+G NG GK+T L +AGL++
Sbjct: 3 SDIVLEVQSLHVYYGAIH-----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57
Query: 90 PTNGHV------------YVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137
G + +V ++ + + ++
Sbjct: 58 AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR 117
Query: 138 KVAKALDA-VGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFG 196
+ + L++ TLSGG++Q +AI AL K+L++DE + L
Sbjct: 118 DLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 197 VIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
V E ++ + + T L V L+ A + +E G+IV++ +L+
Sbjct: 178 VFEVIQKINQEG--TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 129 bits (324), Expect = 5e-37
Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 22/234 (9%)
Query: 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPT 91
V I N++ K + V L + + ++ +G+ + +LGP+G GK+T ++++AGL P+
Sbjct: 2 VRIIVKNVSKVFKKGK---VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 92 NGHVYV----------------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEV 135
G +Y R VFQ + T ++AF L N+ ++ +E+
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL-TAFENIAFPLTNMKMSKEEI 117
Query: 136 RSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQF 195
R +V + + + + L + LSG Q+QRVA+A AL + +LLLDE + LD +
Sbjct: 118 RKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 196 GVIEAVKNLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
VK + G T L V+H + AD + GK+V + +
Sbjct: 178 SARALVKEVQSRLGV-TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 122 bits (307), Expect = 1e-34
Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 18/212 (8%)
Query: 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-------KRPKSFV 104
L S V +G++ L+GPNG GKSTLL +AG+ G +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 71
Query: 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164
A + L+ + A+ + + L R LSGG+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEW 131
Query: 165 QRVAIAGALAEAC-------KVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217
QRV +A + + ++LLLDE LD + Q + + + L + + +
Sbjct: 132 QRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG--LAIVMSS 189
Query: 218 HRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
H L L +A A+ ++ GK++ +L
Sbjct: 190 HDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 122 bits (306), Expect = 2e-34
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 17/219 (7%)
Query: 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV-----------KRPKSFV 104
+ F + +LLGP G GKS L+++AG++KP G V + +R FV
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQK 164
Q+ + G N+ E +V + + +G+++ L R LSGG++
Sbjct: 76 PQDYALFPHLSVYRN---IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGER 132
Query: 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEE-L 223
QRVA+A AL ++LLLDE + +D + ++E ++ + + L VTH L E
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV-PILHVTHDLIEAA 191
Query: 224 EYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYIERIN 262
AD M +G+IV + + + + ++ N
Sbjct: 192 MLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARN 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 120 bits (303), Expect = 5e-34
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 23/227 (10%)
Query: 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93
IE +L ++K + L + S V SG+ +++LGP G GK+ L+++AG P +G
Sbjct: 2 IEIESL----SRKWKNFS--LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55
Query: 94 HVYV-----------KRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKA 142
+ + K +FV+QN M + + + + +V
Sbjct: 56 RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK----NLEFGMRMKKIKDPKRVLDT 111
Query: 143 LDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVK 202
+ + + L R TLSGG++QRVA+A AL K+LLLDE + LD Q E +
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 203 NLLGDSGEVTALWVTHRLEE-LEYADGAFYMEDGKIVMQADGVSILN 248
L + +T L +TH E AD + DGK++ I
Sbjct: 172 VLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 83.1 bits (204), Expect = 3e-20
Identities = 20/170 (11%), Positives = 44/170 (25%), Gaps = 16/170 (9%)
Query: 69 LLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNL 128
+ G G GK+TL+K + L + + + + ++ T F
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF 64
Query: 129 NLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTF 188
S + A A + KV+++DE+
Sbjct: 65 TSKKLV-------------GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM 111
Query: 189 LDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIV 238
S +F + + V + + + ++
Sbjct: 112 ELFSKKF---RDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI 158
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.7 bits (91), Expect = 2e-04
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 160 SGGQKQRVAIAGALAEA----CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALW 215
SGG+K A+A A +LDE+ LD ++ + ++ + +
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQF--IV 391
Query: 216 VTHRLEELEYADGAFYMEDGKIVMQADGVS 245
++ + E +D G Q + S
Sbjct: 392 ISLKNTMFEKSDALV----GVYRQQQENSS 417
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 10/77 (12%), Positives = 24/77 (31%)
Query: 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGL 125
+ ++ G G GKST+L + +L + + F+ + +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 126 GNLNLTHDEVRSKVAKA 142
+ +A+
Sbjct: 63 EKQKKLQIDAAKGIAEE 79
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 15/166 (9%)
Query: 68 MLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDH---------------QV 112
L GP G GK+TL+ + +LK + V + +V
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 113 VMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGA 172
+ +G + L S+ + V + K +
Sbjct: 65 GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124
Query: 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTH 218
+ + L G A+ + + +V VT
Sbjct: 125 IQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTK 170
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 263 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.92 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.81 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.53 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.52 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.37 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.17 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.75 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.21 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 98.12 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.94 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.87 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.81 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.79 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.77 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.76 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.76 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.7 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.66 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.65 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.6 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.59 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.54 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.54 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.5 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.48 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.47 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.46 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.43 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.41 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.38 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.38 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.34 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.33 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.3 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.21 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.19 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.18 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.17 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.16 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.13 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.11 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.1 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.09 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.07 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.06 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.06 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.05 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 97.03 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 97.03 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 97.02 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.02 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.01 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.0 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.98 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.97 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.96 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.94 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.93 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.92 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.92 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.92 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.91 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.9 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.88 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.88 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.87 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.86 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.83 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.82 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.81 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.78 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.76 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.74 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.73 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.72 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.72 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.7 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.69 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.64 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.64 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.62 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.61 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.61 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.6 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.59 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.59 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.57 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.57 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.56 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.5 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.5 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.47 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.47 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.45 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.45 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.44 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.44 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.42 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.38 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.32 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.31 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.31 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.28 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.28 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.27 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.27 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.26 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.24 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.24 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.24 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.22 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.21 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.21 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.15 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.14 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.12 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.1 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.1 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.09 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.09 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.08 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.08 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.07 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.05 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.03 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.01 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.01 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.99 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.99 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.98 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.98 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.97 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.96 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.96 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.91 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.87 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.85 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.85 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.83 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.81 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.8 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.78 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.71 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.69 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.69 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.68 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 95.66 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.61 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.6 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.6 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.57 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.56 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.54 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.49 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.48 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.42 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.4 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.4 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.39 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.36 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.32 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.32 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.31 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.28 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.25 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.24 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.19 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.16 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 95.15 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.14 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.14 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.07 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.02 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.9 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.84 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.83 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.8 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.68 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.6 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.48 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.41 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.41 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.4 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.4 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 94.28 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.26 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.95 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.95 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.93 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.78 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.7 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.63 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.48 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.45 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.45 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.33 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.16 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 93.0 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.92 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.76 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 92.64 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.34 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.13 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 92.06 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.65 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.42 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 91.22 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 91.13 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 91.06 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 90.76 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.63 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.63 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 89.75 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.69 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.15 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 89.04 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.94 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 88.89 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 88.86 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 88.59 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.06 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 87.42 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 87.26 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.08 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 86.89 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 86.68 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 86.48 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.46 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.03 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 85.65 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 85.4 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 84.9 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 84.71 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 84.3 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 82.64 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 81.32 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 80.54 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 80.22 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9.5e-66 Score=444.54 Aligned_cols=211 Identities=31% Similarity=0.449 Sum_probs=191.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
.|+++||+|+|++. .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ ++
T Consensus 6 ~I~v~nlsk~yg~~-----~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGNF-----TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 80 (239)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred eEEEEEEEEEECCE-----EEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceE
Confidence 48999999999863 699999999999999999999999999999999999999999999975 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
||+||++..++.+ ||.+|+.++....+.+.++.++++.++++.++|+++.++++.+|||||||||+|||||+.+|++||
T Consensus 81 g~v~Q~~~l~~~l-tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLl 159 (239)
T d1v43a3 81 SMVFQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 159 (239)
T ss_dssp EEEEC------CC-CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEeechhhcccc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCcee
Confidence 9999998754444 999999998877788888889999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
|||||+||||.++.+++++|+++.++ .|+|||+||||++++ ++|||+++|++|+|+++|++++++++.
T Consensus 160 lDEPts~LD~~~~~~i~~ll~~l~~~-~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 160 MDEPLSNLDAKLRVAMRAEIKKLQQK-LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999998764 378999999999998 579999999999999999999998764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-66 Score=444.59 Aligned_cols=211 Identities=26% Similarity=0.444 Sum_probs=157.9
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ceE
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PKS 102 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~~ 102 (263)
|+++||+|+|++. ++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ ++|
T Consensus 1 Iev~nv~k~yg~~-----~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGEV-----VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG 75 (232)
T ss_dssp EEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEE
T ss_pred CEEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceee
Confidence 6899999999863 699999999999999999999999999999999999999999999975 489
Q ss_pred EEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 024738 103 FVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLL 182 (263)
Q Consensus 103 ~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llll 182 (263)
||||++..++.+ ||++|+.++....+.+.++.++++.++++.++|.++.++++.+|||||||||+|||||+++|++|||
T Consensus 76 ~v~Q~~~l~~~~-tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illl 154 (232)
T d2awna2 76 MVFQSYALYPHL-SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 154 (232)
T ss_dssp EECSSCCC----------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEE
T ss_pred eeccccccccch-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999765544 9999999987777777778888999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhh
Q 024738 183 DELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIK 251 (263)
Q Consensus 183 DEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
||||+|||+.++.++++.|+++.++ .|+|||+||||++++ .+|||+++|++|++++.|++++++++..
T Consensus 155 DEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 223 (232)
T d2awna2 155 DEPLSNLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 223 (232)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHH-SCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCC
Confidence 9999999999999999999998764 478999999999998 5799999999999999999999987643
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.8e-65 Score=443.33 Aligned_cols=214 Identities=29% Similarity=0.401 Sum_probs=197.5
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++ ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 3 ~i~v~nlsk~y~~g---~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG---KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (242)
T ss_dssp CEEEEEEEEEEGGG---TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECCC---CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcch
Confidence 59999999999643 24699999999999999999999999999999999999999999999954
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
++|||||++.+++.+ ||+||+.+++...+.+.++.++++.++++.+||+++.+++|.+|||||||||+|||||+++
T Consensus 80 ~rr~ig~vfQ~~~L~p~l-tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~ 158 (242)
T d1oxxk2 80 EDRKIGMVFQTWALYPNL-TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD 158 (242)
T ss_dssp GGSCEEEEETTSCCCTTS-CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhccceEEeccccccccc-cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhc
Confidence 489999998755544 9999999998888888888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIK 251 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
|++|||||||+|||+.++.++++.|+++.++ .|+|||+||||++++ ++|||+++|++|+|++.|++++++++..
T Consensus 159 P~llllDEPt~~LD~~~~~~i~~~i~~l~~~-~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~ 233 (242)
T d1oxxk2 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSR-LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV 233 (242)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHH-HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred ccceeecCCccCCCHHHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999998764 378999999999997 6899999999999999999999987643
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.4e-65 Score=440.86 Aligned_cols=211 Identities=29% Similarity=0.455 Sum_probs=196.2
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++. .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 3 ~i~v~nl~k~yg~~-----~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 77 (240)
T d1g2912 3 GVRLVDVWKVFGEV-----TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77 (240)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred cEEEEeEEEEECCE-----EEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcc
Confidence 59999999999863 699999999999999999999999999999999999999999999854
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE 175 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 175 (263)
.+||+||++..++.+ ||.+|+.++...++.+.++.++++.++++.++|++..+++|.+|||||||||+|||||++
T Consensus 78 ~~~r~ig~v~Q~~~L~~~l-tV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~ 156 (240)
T d1g2912 78 PKDRDIAMVFQSYALYPHM-TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (240)
T ss_dssp GGGSSEEEECSCCCCCTTS-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred cccccceecccchhhcchh-hhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 489999999755444 999999999877788888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
+|++|||||||+|||+.++..+++.|+++.++ .|+|||+||||++++ .+||||++|++|++++.|++++++++.
T Consensus 157 ~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~-~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P 231 (240)
T d1g2912 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ-LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (240)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEecCCCcccCHHHHHHHHHHHHHHHhc-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998764 378999999999998 579999999999999999999998753
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-65 Score=443.64 Aligned_cols=215 Identities=33% Similarity=0.456 Sum_probs=196.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+|+|+++. ...++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 mi~v~nlsk~y~~~~-~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79 (240)
T ss_dssp CEEEEEEEEEEECSS-CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred CEEEEeEEEEeCCCC-eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhh
Confidence 689999999997642 234689999999999999999999999999999999999999999999964
Q ss_pred ---ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhC
Q 024738 100 ---PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEA 176 (263)
Q Consensus 100 ---~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 176 (263)
++|||||++..++.. ||.+|+.+++...+.+.++.++++.++++.+||++..++++.+|||||||||+|||||+.+
T Consensus 80 ~rr~ig~VfQ~~~l~~~~-tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~ 158 (240)
T d3dhwc1 80 ARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 158 (240)
T ss_dssp HHHHEEECCSSCCCCTTS-BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTC
T ss_pred hhccccccccccccCCCc-cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccC
Confidence 389999998654433 9999999988777788888889999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
|++|||||||+|||+.++.++++.|+++.++ .|+|||+||||++++ .+|||+++|++|+|++.|++++++++.
T Consensus 159 P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~-~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P 232 (240)
T d3dhwc1 159 PKVLLCDEATSALDPATTRSILELLKDINRR-LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232 (240)
T ss_dssp CSEEEEESGGGSSCHHHHHHHHHHHHHHHHH-HCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSS
T ss_pred CCeEEeccccccCCHHHhhHHHHHHHHHHhc-cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999764 378999999999998 579999999999999999999998753
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.9e-64 Score=433.87 Aligned_cols=208 Identities=31% Similarity=0.436 Sum_probs=189.1
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
+|+++||+|+|++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ .+
T Consensus 1 mi~v~nlsk~y~~------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~i 74 (229)
T d3d31a2 1 MIEIESLSRKWKN------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (229)
T ss_dssp CEEEEEEEEECSS------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred CEEEEEEEEEeCC------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcc
Confidence 5899999999975 389999999999999999999999999999999999999999999975 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
||+||++..++.+ ||.+|+.++....+... .+++.++++.+++.+++++++.+|||||||||+|||||+++|++||
T Consensus 75 g~v~Q~~~l~~~~-tV~enl~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLl 150 (229)
T d3d31a2 75 AFVYQNYSLFPHM-NVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150 (229)
T ss_dssp EEECTTCCCCTTS-CHHHHHHHHHHHHCCCC---HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred eeeccccccCccc-cHHHHHHHHHhhccccH---HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCcee
Confidence 9999999765554 99999999875544433 3568889999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIK 251 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
|||||+|||+.++.+++++|+++.++ .|.|||+||||++++ .+|||+++|++|+++++|++++++++..
T Consensus 151 lDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~ 220 (229)
T d3d31a2 151 LDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220 (229)
T ss_dssp EESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred ecCCCcCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999998764 478999999999998 5799999999999999999999987633
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-63 Score=429.85 Aligned_cols=208 Identities=27% Similarity=0.454 Sum_probs=186.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+|+|+.+. ....+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++
T Consensus 1 mI~i~nlsk~y~~~~-~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp CEEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEeEEEEeCCCC-eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcch
Confidence 689999999997542 224589999999999999999999999999999999999999999999975
Q ss_pred ----ceEEEecCCCCcccccCHHHHHHhhccCC---CCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHHHHHHHHH
Q 024738 100 ----PKSFVFQNPDHQVVMPTVEADVAFGLGNL---NLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQKQRVAIAG 171 (263)
Q Consensus 100 ----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAr 171 (263)
++|||||++..++.+ ||.+|+.++.... ..+.++..+++.++++.++|.+ ..+++|.+|||||||||+|||
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLL-TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHHEEEECTTCCCCTTS-CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhcceEEEEecchhhCcCc-cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 389999998755444 9999999875432 4456777788999999999976 689999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecCh
Q 024738 172 ALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 172 al~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
||+.+|++|||||||++||+.++..+++.|+++.++ .|+|||+||||++++++|||+++|++|+|+++|++
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999998764 47999999999998889999999999999999875
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.7e-62 Score=423.81 Aligned_cols=221 Identities=24% Similarity=0.348 Sum_probs=192.9
Q ss_pred CCcceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC---------
Q 024738 29 ESGVAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------- 99 (263)
Q Consensus 29 ~~~~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------- 99 (263)
.++.+|+++||+|+|++. .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 2 ~sd~~Lev~~l~k~yg~~-----~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 2 VSDIVLEVQSLHVYYGAI-----HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp CCSEEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CcceEEEEeeEEEEECCE-----EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHH
Confidence 346799999999999864 699999999999999999999999999999999999999999999975
Q ss_pred -----ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHc-CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 100 -----PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAV-GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 100 -----~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
.++|+||++..+..+ ||.+|+.++..... .....++.+.++++.+ ++.+..++++.+|||||||||+|||||
T Consensus 77 ~~~r~gi~~~~q~~~l~~~l-tv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPEL-TVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTS-BHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHHHhcccccCcccccCCcc-cHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 278999988655444 99999988754332 3344455666777776 688899999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKS 252 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
+.+|++|||||||+||||.++.+++++|++++++ |+|||++|||++++ ++|||+++|++|+++++|++++++++ +.
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~--g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~-~~ 231 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN-EM 231 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC-HH
T ss_pred HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC-HH
Confidence 9999999999999999999999999999998653 78999999999997 68999999999999999999999875 44
Q ss_pred hhhhhhh
Q 024738 253 RQSSYIE 259 (263)
Q Consensus 253 ~~~~~~~ 259 (263)
..+.|++
T Consensus 232 v~~~ylG 238 (240)
T d1ji0a_ 232 VRKAYLG 238 (240)
T ss_dssp HHHHHSC
T ss_pred HHHHhCc
Confidence 5566754
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.7e-62 Score=426.06 Aligned_cols=210 Identities=29% Similarity=0.385 Sum_probs=190.8
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|++. ++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|++++
T Consensus 2 ~Lev~nl~k~yg~~-----~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~ 76 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH-----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 76 (258)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSE
T ss_pred eEEEEEEEEEECCE-----EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhc
Confidence 59999999999863 699999999999999999999999999999999999999999999864
Q ss_pred -------------ceEEEecCCCCcccccCHHHHHHhh-ccCCCCChHHHHHHHHHHHHHcCCCc-ccCCCCCCCChHHH
Q 024738 100 -------------PKSFVFQNPDHQVVMPTVEADVAFG-LGNLNLTHDEVRSKVAKALDAVGMSN-YLQRPVQTLSGGQK 164 (263)
Q Consensus 100 -------------~~~~v~q~~~~~~~~~tv~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqk 164 (263)
++|||||++..++.+ ||.+|+.++ ....+.+..+.++++.++++.+++.+ ..+++|.+||||||
T Consensus 77 ~~~~~~~~~~~r~~ig~vfQ~~~l~~~~-tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~ 155 (258)
T d1b0ua_ 77 KVADKNQLRLLRTRLTMVFQHFNLWSHM-TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ 155 (258)
T ss_dssp EESCHHHHHHHHHHEEEECSSCCCCTTS-CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHH
T ss_pred ccccHhHHHHHhcceEEEEechhhccch-hcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHH
Confidence 379999998754444 999999886 34556677888889999999999986 46888999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecCh
Q 024738 165 QRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADG 243 (263)
Q Consensus 165 qRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~ 243 (263)
|||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |+|||+||||++++ .+||||++|++|+|+++|++
T Consensus 156 QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~--g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~ 233 (258)
T d1b0ua_ 156 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233 (258)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc--CCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999998653 68999999999998 57999999999999999999
Q ss_pred hhHHhhh
Q 024738 244 VSILNFI 250 (263)
Q Consensus 244 ~~~~~~~ 250 (263)
++++++.
T Consensus 234 ~ev~~~P 240 (258)
T d1b0ua_ 234 EQVFGNP 240 (258)
T ss_dssp HHHHHSC
T ss_pred HHHHhCC
Confidence 9998763
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.8e-61 Score=416.85 Aligned_cols=220 Identities=26% Similarity=0.352 Sum_probs=197.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC------------c
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------P 100 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------~ 100 (263)
.|+++||+|+|+++ +||+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ .
T Consensus 2 aI~v~nl~k~yg~~-----~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ 76 (238)
T d1vpla_ 2 AVVVKDLRKRIGKK-----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 76 (238)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred CEEEEeEEEEECCE-----EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhh
Confidence 48999999999874 699999999999999999999999999999999999999999999965 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVL 180 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 180 (263)
++|+||++..+..+ |+.+|+.+....++.+..+..+.+..+++.+++.+..++++.+||||||||++|||||+++|++|
T Consensus 77 i~~vpq~~~~~~~l-tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~il 155 (238)
T d1vpla_ 77 ISYLPEEAGAYRNM-QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 155 (238)
T ss_dssp EEEECTTCCCCTTS-BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EeEeeeccccCCCc-cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999998655444 99999988765556677777888999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh--hhhhhhh
Q 024738 181 LLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI--KSRQSSY 257 (263)
Q Consensus 181 llDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~--~~~~~~~ 257 (263)
||||||+|||+.++.+++++|++++++ |+|||++|||++++ .+||||++|++|+++++|+++++.+.. ...+..|
T Consensus 156 lLDEPt~gLD~~~~~~i~~~i~~~~~~--g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~~~~f 233 (238)
T d1vpla_ 156 ILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVF 233 (238)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCCchHHHHH
Confidence 999999999999999999999998653 68999999999998 489999999999999999999998653 3345556
Q ss_pred hhh
Q 024738 258 IER 260 (263)
Q Consensus 258 ~~~ 260 (263)
.+.
T Consensus 234 ~~~ 236 (238)
T d1vpla_ 234 EEV 236 (238)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.7e-61 Score=419.79 Aligned_cols=209 Identities=29% Similarity=0.408 Sum_probs=187.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
+|+++||+|+|++. ++|+||||++++||++||+||||||||||+|+|+|+++|++|+|++++
T Consensus 4 iL~v~nlsk~yg~~-----~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF-----KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 78 (254)
T ss_dssp EEEEEEEEEEETTE-----EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred eEEEEEEEEEECCe-----EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHH
Confidence 79999999999864 699999999999999999999999999999999999999999999975
Q ss_pred -ceEEEecCCCCcccccCHHHHHHhhccC-------------CCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHH
Q 024738 100 -PKSFVFQNPDHQVVMPTVEADVAFGLGN-------------LNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQ 165 (263)
Q Consensus 100 -~~~~v~q~~~~~~~~~tv~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq 165 (263)
.++|+||++..++.+ ||.+|+.++... .....++..+++.++++.+++....++++.+|||||||
T Consensus 79 ~gi~~v~Q~~~~~~~l-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Q 157 (254)
T d1g6ha_ 79 YGIVRTFQTPQPLKEM-TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK 157 (254)
T ss_dssp HTEEECCCCCGGGGGS-BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred hcCCccCCccccCCCC-eeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHH
Confidence 289999999754444 999999876321 11233455677889999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChh
Q 024738 166 RVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGV 244 (263)
Q Consensus 166 Rv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 244 (263)
||+|||||+.+|++|||||||+|||+..+.++++.|+++++ +|+|||++|||++++ ++||||++|++|+++++|+++
T Consensus 158 rv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~ 235 (254)
T d1g6ha_ 158 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 235 (254)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESH
T ss_pred HHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHH
Confidence 99999999999999999999999999999999999999864 379999999999997 689999999999999999999
Q ss_pred hHHhh
Q 024738 245 SILNF 249 (263)
Q Consensus 245 ~~~~~ 249 (263)
++.+.
T Consensus 236 e~~~~ 240 (254)
T d1g6ha_ 236 EEIKN 240 (254)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 87654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.6e-60 Score=408.54 Aligned_cols=213 Identities=29% Similarity=0.422 Sum_probs=187.6
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-----------ce
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-----------PK 101 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-----------~~ 101 (263)
.|++ ++.|+|++. -+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.+++ ++
T Consensus 2 ~l~v-~~~k~~g~~------~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~i 72 (240)
T d2onka1 2 FLKV-RAEKRLGNF------RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI 72 (240)
T ss_dssp CEEE-EEEEEETTE------EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCC
T ss_pred EEEE-EEEEEECCE------EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCc
Confidence 4778 679999863 23 8999995 689999999999999999999999999999999975 48
Q ss_pred EEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 024738 102 SFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLL 181 (263)
Q Consensus 102 ~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 181 (263)
||+||++..++.+ ||+||+.|++. ..+..+.++++.++++.+||.++.++++.+|||||||||+|||||+++|++||
T Consensus 73 g~v~Q~~~l~~~l-tV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ill 149 (240)
T d2onka1 73 GFVPQDYALFPHL-SVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp BCCCSSCCCCTTS-CHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred eeeccchhhcccc-hhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceE
Confidence 9999998755444 99999999864 45667777889999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhhhhhhhhhh
Q 024738 182 LDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFIKSRQSSYI 258 (263)
Q Consensus 182 lDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 258 (263)
|||||+|||+.++..+++.|+++.++ .|+|||+||||++++ .+|||+++|++|++++.|++++++++.......|+
T Consensus 150 lDEPts~LD~~~~~~i~~~i~~l~~~-~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 150 LDEPLSAVDLKTKGVLMEELRFVQRE-FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHH-HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred ecCccccCCHHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHh
Confidence 99999999999999999999999764 368999999999997 57999999999999999999999875433333444
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-59 Score=405.55 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=179.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. ...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++++
T Consensus 11 ~I~~~nvsf~Y~~~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRP--DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CEEEEEEEECCTTST--TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEECCCCC--CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHH
Confidence 599999999997632 24699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSK-----VAKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
+++||||+|.. +..|+++|+.++.... ....+..+. +.+.++.+ +++...++.+.+|||||||||+||||
T Consensus 89 ~i~~v~Q~~~l--f~~tv~eni~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 89 QVAAVGQEPQV--FGRSLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HEEEECSSCCC--CSSBHHHHHHCSCSSC-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred Hhhhccccccc--cCcchhhhhhhhhccc-chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeec
Confidence 48999999853 4459999999875332 222222111 22334444 55666788889999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|++||||||||+||+.++..+++.|.++.++ .++|+|+||||++.++.||||++|++|+|++.|+++++++.
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~-~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~ 241 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPER-YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 241 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGG-GGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred cccCCcEEEecCcCcccChhhHHHHHHHHHHHhhh-cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999987653 36899999999998888999999999999999999999875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-58 Score=401.56 Aligned_cols=210 Identities=28% Similarity=0.414 Sum_probs=176.0
Q ss_pred EEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------c
Q 024738 34 IECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR-------------P 100 (263)
Q Consensus 34 l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~-------------~ 100 (263)
|+++||+|+|+... .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 2 I~~~nvsf~Y~~~~---~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 78 (241)
T d2pmka1 2 ITFRNIRFRYKPDS---PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78 (241)
T ss_dssp EEEEEEEEESSTTS---CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred eEEEEEEEEeCCCC---cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhce
Confidence 79999999996532 4699999999999999999999999999999999999999999999975 4
Q ss_pred eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH--HHHHc-----CCCcccCCCCCCCChHHHHHHHHHHHH
Q 024738 101 KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK--ALDAV-----GMSNYLQRPVQTLSGGQKQRVAIAGAL 173 (263)
Q Consensus 101 ~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~-----~l~~~~~~~~~~LSgGqkqRv~lAral 173 (263)
++||||++. .+..|+++|+.++... ...++..+.+.. +.+.+ +++......+..|||||||||+|||||
T Consensus 79 i~~v~Q~~~--lf~~Ti~eNi~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal 154 (241)
T d2pmka1 79 VGVVLQDNV--LLNRSIIDNISLANPG--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 154 (241)
T ss_dssp EEEECSSCC--CTTSBHHHHHCTTSTT--CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EEEEecccc--cCCccccccccccCcc--ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhh
Confidence 899999985 3445999999886432 333333222211 12221 233456677899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhhhhhh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNFIKSR 253 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 253 (263)
+++|++||||||||+||+.++..+++.|+++.+ ++|+|+|||+++.++.||+|++|++|+|++.|+++++++...+.
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~ 231 (241)
T d2pmka1 155 VNNPKILIFDEATSALDYESEHVIMRNMHKICK---GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231 (241)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT---TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCH
T ss_pred hcccchhhhhCCccccCHHHHHHHHHHHHHHhC---CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCH
Confidence 999999999999999999999999999999853 57999999999999889999999999999999999998753333
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.9e-59 Score=402.66 Aligned_cols=203 Identities=28% Similarity=0.462 Sum_probs=172.0
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
||+++||+|+|+++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 mle~knvsf~Y~~~----~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 76 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS----EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (242)
T ss_dssp CEEEEEEEECSSSS----SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred CEEEEEEEEECCCC----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHh
Confidence 68999999999764 3699999999999999999999999999999999999999999999965
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~ 168 (263)
+++||||++. .+..|+++|+.++.... ....+.. +.++..++. ......+.+|||||||||+
T Consensus 77 ~i~~v~Q~~~--lf~~ti~eNi~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~ 149 (242)
T d1mv5a_ 77 QIGFVSQDSA--IMAGTIRENLTYGLEGD-YTDEDLW----QVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (242)
T ss_dssp TCCEECCSSC--CCCEEHHHHTTSCTTSC-SCHHHHH----HHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred heEEEccccc--cCCcchhhheecccccc-cchhhHH----HHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHH
Confidence 4899999985 34459999998764321 2232222 233333222 2234456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.++..+++.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++
T Consensus 150 iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK---GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT---TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC---CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999853 579999999999988899999999999999999999997
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 227 ~ 227 (242)
T d1mv5a_ 227 T 227 (242)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.4e-57 Score=396.33 Aligned_cols=208 Identities=28% Similarity=0.475 Sum_probs=178.3
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++++
T Consensus 13 ~I~~~nvsf~Y~~~~---~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 13 DLEFRNVTFTYPGRE---VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CEEEEEEEECSSSSS---CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEEeCCCC---CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence 499999999997643 4699999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHH-----HHHHHHc--CCCcccCCCCCCCChHHHHHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKV-----AKALDAV--GMSNYLQRPVQTLSGGQKQRVAIAGA 172 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAra 172 (263)
.++|++|++. .+..|+.+|+.++.. ...+.++..+.+ .+.++.+ |++..+.+.+.+|||||||||+||||
T Consensus 90 ~i~~v~Q~~~--l~~~ti~~n~~~~~~-~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 90 QVALVSQNVH--LFNDTVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp TEEEECSSCC--CCSSBHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred eEEEEeeccc--cCCcchhhhhhhcCc-ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHH
Confidence 4899999985 344599999988632 223333333222 1233333 56666777889999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
|+++|++||||||||+||+.++..+++.|+++.+ ++|+|+||||++.++.||+|++|++|+|++.|+++++++.
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc---CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999853 5799999999999889999999999999999999999975
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5.6e-57 Score=393.93 Aligned_cols=203 Identities=28% Similarity=0.414 Sum_probs=174.7
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC-------------
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR------------- 99 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~------------- 99 (263)
.|+++||+|+|+++. .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++
T Consensus 16 ~I~~~nvsf~Y~~~~---~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 16 RIDIDHVSFQYNDNE---APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CEEEEEEEECSCSSS---CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred EEEEEEEEEEeCCCC---CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 599999999997643 4799999999999999999999999999999999999999999999975
Q ss_pred ceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCCCChHHHHHHH
Q 024738 100 PKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMS-----------NYLQRPVQTLSGGQKQRVA 168 (263)
Q Consensus 100 ~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~ 168 (263)
+++||+|++. ++..|+++|+.++... ...++ +.++++.+++. ......+.+||||||||++
T Consensus 93 ~i~~v~Q~~~--lf~~Ti~eNi~~g~~~--~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~ 164 (255)
T d2hyda1 93 QIGLVQQDNI--LFSDTVKENILLGRPT--ATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 164 (255)
T ss_dssp TEEEECSSCC--CCSSBHHHHHGGGCSS--CCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred eeeeeecccc--CCCCCHHHHHhccCcC--CCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHH
Confidence 4899999985 3445999999987432 23333 33444444443 2334456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHh
Q 024738 169 IAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILN 248 (263)
Q Consensus 169 lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
|||||+++|++||||||||+||+.++..+++.|.++.+ ++|+|+|||+++.++.||+|++|++|+|++.|+++++++
T Consensus 165 iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~---~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 165 IARIFLNNPPILILDEATSALDLESESIIQEALDVLSK---DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998743 579999999999998999999999999999999999997
Q ss_pred h
Q 024738 249 F 249 (263)
Q Consensus 249 ~ 249 (263)
.
T Consensus 242 ~ 242 (255)
T d2hyda1 242 K 242 (255)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-54 Score=370.98 Aligned_cols=207 Identities=24% Similarity=0.350 Sum_probs=177.6
Q ss_pred ceEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc-----------
Q 024738 32 VAIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP----------- 100 (263)
Q Consensus 32 ~~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~----------- 100 (263)
.+|+++||+++| +|+||||+|++||++||+||||||||||+|+|+|+. |++|+|.++++
T Consensus 2 ~il~~~dv~~~~---------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~ 71 (231)
T d1l7vc_ 2 IVMQLQDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 71 (231)
T ss_dssp EEEEEEEECCTT---------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHH
T ss_pred eEEEEECcccCc---------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHH
Confidence 479999997543 799999999999999999999999999999999975 68999999762
Q ss_pred --eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhh---
Q 024738 101 --KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAE--- 175 (263)
Q Consensus 101 --~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--- 175 (263)
.+|++|..... +..++.+++.++.... ...+.+.++++.+++.+.+++++.+|||||||||+|||||++
T Consensus 72 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p 145 (231)
T d1l7vc_ 72 LHRAYLSQQQTPP-FATPVWHYLTLHQHDK-----TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (231)
T ss_dssp HHEEEECSCCCCC-SSCBHHHHHHHHCSCT-----TCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred hhceeeeccccCC-ccccHHHHhhhccchh-----hHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCc
Confidence 68999986533 3448888887653221 123557788999999999999999999999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-hcCCEEEEEeCCEEEEecChhhHHhhh
Q 024738 176 ----ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-EYADGAFYMEDGKIVMQADGVSILNFI 250 (263)
Q Consensus 176 ----~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
+|++|||||||+|||+.++..++++|++++++ |+|||+||||++++ ++|||+++|++|+++++|++++++++
T Consensus 146 ~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~--g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~- 222 (231)
T d1l7vc_ 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ--GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP- 222 (231)
T ss_dssp TTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHT--TCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH-
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC-
Confidence 77999999999999999999999999998653 78999999999997 68999999999999999999999875
Q ss_pred hhhhhhh
Q 024738 251 KSRQSSY 257 (263)
Q Consensus 251 ~~~~~~~ 257 (263)
+.....|
T Consensus 223 ~~l~~~y 229 (231)
T d1l7vc_ 223 PNLAQAY 229 (231)
T ss_dssp HHHHHHH
T ss_pred hHHHHhh
Confidence 3344433
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.7e-53 Score=374.90 Aligned_cols=192 Identities=24% Similarity=0.360 Sum_probs=157.9
Q ss_pred ccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCC
Q 024738 51 VPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNL 130 (263)
Q Consensus 51 ~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~ 130 (263)
.+||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++++++|++|++.. +..|+++|+.++...
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l--~~~tv~eni~~~~~~--- 123 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI--MPGTIKENIIFGVSY--- 123 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCC--CSEEHHHHHTTTSCC---
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccc--cCceeeccccccccc---
Confidence 379999999999999999999999999999999999999999999999999999998853 334999999886432
Q ss_pred ChHHHHHHHHH---HHHHcCC----CcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 024738 131 THDEVRSKVAK---ALDAVGM----SNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKN 203 (263)
Q Consensus 131 ~~~~~~~~~~~---~l~~~~l----~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~ 203 (263)
........+.. ......+ .....+.+.+|||||||||+|||||+++|++|||||||++||+.++..+++.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~ 203 (281)
T d1r0wa_ 124 DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 203 (281)
T ss_dssp CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHH
Confidence 22222211111 1111122 2345566788999999999999999999999999999999999999988876433
Q ss_pred HHhcCCCcEEEEEccCcchhhcCCEEEEEeCCEEEEecChhhHHhh
Q 024738 204 LLGDSGEVTALWVTHRLEELEYADGAFYMEDGKIVMQADGVSILNF 249 (263)
Q Consensus 204 l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
.. ..++|+|+|||+++.++.||||++|++|++++.|+++++++.
T Consensus 204 ~~--~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 204 KL--MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL 247 (281)
T ss_dssp CC--TTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred Hh--hCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence 32 236799999999998889999999999999999999999764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.1e-50 Score=339.93 Aligned_cols=188 Identities=23% Similarity=0.378 Sum_probs=155.9
Q ss_pred eEEEEeEEEEECCCccccccceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC--------ceEEE
Q 024738 33 AIECSNLNYSITKKQRKLVPILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR--------PKSFV 104 (263)
Q Consensus 33 ~l~~~nl~~~y~~~~~~~~~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~--------~~~~v 104 (263)
.|+++||+++|++ ++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +++|+
T Consensus 2 ~lev~~ls~~y~~------~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~ 75 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL 75 (200)
T ss_dssp EEEEEEEEEESSS------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEE
T ss_pred eEEEEEEEEEeCC------eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEE
Confidence 5999999999953 599999999999999999999999999999999999999999999976 58999
Q ss_pred ecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 024738 105 FQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDE 184 (263)
Q Consensus 105 ~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDE 184 (263)
+|+...+.. .++.+++.+....++.... ++.+.++++.+++.+ +++++.+||||||||++|||||+.+|++|||||
T Consensus 76 ~~~~~~~~~-~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDE 151 (200)
T d1sgwa_ 76 PEEIIVPRK-ISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD 151 (200)
T ss_dssp CSSCCCCTT-SBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred eecccCCCC-cCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcC
Confidence 998754333 3899998765433332211 234567788888765 456789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEEEeC
Q 024738 185 LTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFYMED 234 (263)
Q Consensus 185 Pts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~l~~ 234 (263)
||+|||+.++.++++.|.++.++ ++++||.++|++ .+||++.+|++
T Consensus 152 Pt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 152 PVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp TTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC---TTSSEEEEGGG
T ss_pred cccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh---hhcchhhheee
Confidence 99999999999999999998765 355555555554 57999988754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.81 E-value=1.2e-21 Score=158.46 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=99.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCc--------eEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRP--------KSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~--------~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
.++|+||||||||||+|+|+|.++|+.|.+.+.+. .++........... .. ...... ....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~-~~~~----- 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-FS----SKFFTS-KKLV----- 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEE-EE----ETTCCC-SSEE-----
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHH-Hh----hhhhhh-hhhh-----
Confidence 37899999999999999999999999999987532 12111110000000 00 000000 0000
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVT 217 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivt 217 (263)
...+. +....++|+|+++|.++++++..+|+++++|||....+ ....+.+.+.++.+. .+.++|+++
T Consensus 71 ------~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~-~~~~il~~~ 137 (178)
T d1ye8a1 71 ------GSYGV----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHD-PNVNVVATI 137 (178)
T ss_dssp ------TTEEE----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTC-TTSEEEEEC
T ss_pred ------hhhhc----CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhcc-CCCEEEEEE
Confidence 00000 11122488999999999999999999999999854433 234455666665543 357999999
Q ss_pred cCcchhhcCCEEEEEeCCEEEEecC
Q 024738 218 HRLEELEYADGAFYMEDGKIVMQAD 242 (263)
Q Consensus 218 H~~~~~~~~d~v~~l~~G~i~~~g~ 242 (263)
|+......|+++..+.+|+++.-+.
T Consensus 138 h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 138 PIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp CSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred ccHHHHHhhceEEEEeCCEEEEECC
Confidence 9987777899999999999986543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=7.8e-14 Score=121.30 Aligned_cols=77 Identities=26% Similarity=0.269 Sum_probs=65.5
Q ss_pred CCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEEE
Q 024738 156 VQTLSGGQKQRVAIAGAL----AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAFY 231 (263)
Q Consensus 156 ~~~LSgGqkqRv~lAral----~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~~ 231 (263)
...+|+|||+...++..+ ...+.++++|||-++|+|.....+.+.|++..+ +.-||++||++..++.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~QviitTHsp~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFIVITHNKIVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEEEECCCTTGGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc---CCEEEEEECCHHHHHhcccEEE
Confidence 468999999998777654 457799999999999999999999999998753 3579999999999999999865
Q ss_pred --EeCC
Q 024738 232 --MEDG 235 (263)
Q Consensus 232 --l~~G 235 (263)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.17 E-value=3.4e-11 Score=107.99 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhhcCCEEE
Q 024738 155 PVQTLSGGQKQRVAIAGAL----AEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELEYADGAF 230 (263)
Q Consensus 155 ~~~~LSgGqkqRv~lAral----~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~~~d~v~ 230 (263)
+...||||||.+++||..+ ..++++++||||+++||+..+..+.++|.++.. .+.-+|++||+...+..||+++
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLKNTMFEKSDALV 406 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSCHHHHTTCSEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHhcccEE
Confidence 3467899999998877654 367889999999999999999999999988743 2356999999999999999987
Q ss_pred EE
Q 024738 231 YM 232 (263)
Q Consensus 231 ~l 232 (263)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=5.8e-08 Score=81.50 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=36.0
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCcEEEEEccCcchh
Q 024738 174 AEACKVLLLDELTTFLDESDQFGVIEA-VKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 174 ~~~p~llllDEPts~LD~~~~~~l~~~-l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
+.+..++|+||+..|=++.....+... +..+..+ .+..+|++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecchHHHh
Confidence 344569999999999999988877554 5555443 346789999987654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.73 E-value=1.1e-07 Score=79.35 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=36.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchhh
Q 024738 175 EACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEELE 224 (263)
Q Consensus 175 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~~ 224 (263)
.+..++|+||+..|=++.....+...+-+...+. +..++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~-~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHER-RAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhc-CcceEEeeechhhhh
Confidence 4556999999999999988777666555433333 468899999977654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=9.3e-08 Score=75.62 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=29.7
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+++.+|.+.+| +++|+|||||||||+|.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 468888999886 9999999999999999998643
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=0.00014 Score=60.39 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=71.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL----KPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRS 137 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~----~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 137 (263)
-+|+++.|.|+.|+|||||+--|+--+ +...+...-.+++-|+..+.. ...+...+.-.. .......
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~----~~~~~~Rl~~~~--~~~~~~~--- 97 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP----PTAIHHRLHALG--AHLSAEE--- 97 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC----HHHHHHHHHHHH--TTSCHHH---
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccch----HHHHHHHHHHHh--hccChhh---
Confidence 469999999999999999985544211 000000000112333333221 111222221111 1122211
Q ss_pred HHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCCcE
Q 024738 138 KVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTT-----FLDESDQFGVIEAVKNLLGDSGEVT 212 (263)
Q Consensus 138 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts-----~LD~~~~~~l~~~l~~l~~~~~~~t 212 (263)
.......+.+............- ..+.-...-..+|+++++|--++ --|......++..|+.+++.. +++
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~-~~~ 172 (274)
T d1nlfa_ 98 -RQAVADGLLIQPLIGSLPNIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT-GCS 172 (274)
T ss_dssp -HHHHHHHEEECCCTTSCCCTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH-CCE
T ss_pred -hhcccccceeccccCccchhHHH---HHHHHHHHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcC-CCc
Confidence 12223333333222222222222 22222334467999999995432 126666777888888877653 689
Q ss_pred EEEEccC
Q 024738 213 ALWVTHR 219 (263)
Q Consensus 213 iiivtH~ 219 (263)
||++.|-
T Consensus 173 vi~v~H~ 179 (274)
T d1nlfa_ 173 IVFLHHA 179 (274)
T ss_dssp EEEEEEC
T ss_pred eehhhhc
Confidence 9999883
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.87 E-value=1.7e-05 Score=66.51 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=28.1
Q ss_pred cceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 52 PILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 52 ~iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
+-|+++..=+.+|+++.|.|++|+|||||+.-++
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4566665458999999999999999999986665
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=5e-06 Score=65.90 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=24.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
|.+++|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999876543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=5.3e-06 Score=63.96 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+++|+|++|||||||++.|+.-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.77 E-value=0.00021 Score=58.14 Aligned_cols=157 Identities=9% Similarity=0.077 Sum_probs=81.2
Q ss_pred ceeceeeE--EeCCCEEEEECCCCCcHHHHHHHH-hCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCC
Q 024738 53 ILRDCSFS--VPSGQLWMLLGPNGCGKSTLLKVL-AGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLN 129 (263)
Q Consensus 53 iL~~vsl~--i~~Ge~~~l~G~NGsGKSTLlk~i-~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~ 129 (263)
-|+.+ +. +++|.++.|.|++|||||||+--+ +...+. .+ .+.|+.-+. +....... +...+
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~-~~------~~~~is~e~-------~~~~~~~~-~~~~~ 77 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEE-------SRAQLLRN-AYSWG 77 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSS-------CHHHHHHH-HHTTS
T ss_pred HHHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-cc------ccceeeccC-------CHHHHHHH-HHHcC
Confidence 35554 34 899999999999999999998444 443322 11 123333221 22221111 11222
Q ss_pred CChHHHHHHHHHHHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh
Q 024738 130 LTHDEVRSKVAKALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDEL---TTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEP---ts~LD~~~~~~l~~~l~~l~~ 206 (263)
....+ +...+.....+.........+.-.......--.+|++++.|-- ..+.+..........+.++++
T Consensus 78 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (242)
T d1tf7a2 78 MDFEE--------MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK 149 (242)
T ss_dssp CCHHH--------HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred CChHH--------HhhcCceEEEEeecchhhHHHHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 22211 1122322222223333333322211111123358999998854 334466666666677767666
Q ss_pred cCCCcEEEEEccCcc----------hhh-cCCEEEEEeC
Q 024738 207 DSGEVTALWVTHRLE----------ELE-YADGAFYMED 234 (263)
Q Consensus 207 ~~~~~tiiivtH~~~----------~~~-~~d~v~~l~~ 234 (263)
+ .+.+++++.|--. .+. .||-++.++.
T Consensus 150 ~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 150 Q-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp H-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred H-cCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence 4 4678888887421 122 5899988853
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=8.3e-06 Score=67.52 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
+|+.++++|+||+|||||+|.|.|-..-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6899999999999999999999987666667774
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=2.2e-06 Score=66.56 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=26.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
..+.|+||+|||||||++.++..+....+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 35889999999999999999998876655553
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.70 E-value=9e-06 Score=62.94 Aligned_cols=26 Identities=42% Similarity=0.663 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.|+++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999865
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.66 E-value=1.3e-05 Score=70.69 Aligned_cols=28 Identities=25% Similarity=0.601 Sum_probs=23.5
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
++.+..+.+.+|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455656799999999999999999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=1.1e-05 Score=62.38 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++.++.|+||+||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.60 E-value=1.4e-05 Score=61.71 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+|-++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.59 E-value=8.7e-06 Score=63.34 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.+++|+|++|||||||++-|...++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 478999999999999998887766544
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.54 E-value=8.3e-06 Score=67.76 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
+|..++++|+||+|||||+|.|.|-..-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 6889999999999999999999997666667775
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.54 E-value=2.4e-05 Score=60.42 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|-.++|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999998754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.50 E-value=2.1e-05 Score=60.82 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..++|+||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999865
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.48 E-value=3.2e-05 Score=59.46 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=3.1e-05 Score=62.93 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.|.++.|+||+|||||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998887654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.46 E-value=0.0003 Score=57.26 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=46.3
Q ss_pred CCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLL-KVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAK 141 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 141 (263)
...+++++||+|+||||.+ |+-+- +. ..| .+++++--|.. .. -. .+.+..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~-~~-~~g-----~kV~lit~Dt~---R~-ga------------------~eQL~~ 61 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF-YK-KKG-----FKVGLVGADVY---RP-AA------------------LEQLQQ 61 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH-HH-HTT-----CCEEEEECCCS---SH-HH------------------HHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-HH-HCC-----CceEEEEeecc---cc-ch------------------hHHHHH
Confidence 4567999999999999986 55443 32 223 34666665431 11 11 123334
Q ss_pred HHHHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 024738 142 ALDAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFL 189 (263)
Q Consensus 142 ~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~L 189 (263)
+.+.+|+.-..-....++..=.++ ++..+...+.+++|.| |+|.
T Consensus 62 ~a~~l~v~~~~~~~~~~~~~~~~~--a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 62 LGQQIGVPVYGEPGEKDVVGIAKR--GVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HHHHHTCCEECCTTCCCHHHHHHH--HHHHHHHTTCSEEEEE--CCCS
T ss_pred hccccCcceeecccchhhhHHHHH--HHHHhhccCCceEEEe--cCCc
Confidence 455556553333333333222222 4455556677777777 5553
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.43 E-value=3.8e-05 Score=59.51 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
+.+++|.|+.||||||+.+.|+-.+.....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~ 30 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGV 30 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999876544433
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=3.5e-05 Score=58.21 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.38 E-value=3.9e-05 Score=58.01 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~G 86 (263)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999997643
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.38 E-value=3.7e-05 Score=60.35 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
++||.|++|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=3e-05 Score=60.97 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998644
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.33 E-value=5.3e-05 Score=57.86 Aligned_cols=24 Identities=50% Similarity=0.782 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++.|.||.||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999765
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.30 E-value=5.4e-05 Score=58.03 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|+||.||||||+.+.|+--
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.21 E-value=0.00018 Score=58.80 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
+..++|+||.-. |.......+.+.+.+.. ....+|++|++.+-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~---~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhccccccc---ccccceeeeccccch
Confidence 566999999854 88888887777776642 235689999998754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.19 E-value=8.3e-05 Score=58.95 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|+||+|||||||++.|+.-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999887643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=7.8e-05 Score=59.09 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999953
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.17 E-value=9.3e-05 Score=60.12 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999998753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.16 E-value=0.00058 Score=56.73 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-+.+.||.|||||+|.+.|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00011 Score=59.11 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++||.|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887655
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00014 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
..++|+||+|+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.10 E-value=0.00014 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|||||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.09 E-value=0.00012 Score=58.31 Aligned_cols=21 Identities=57% Similarity=0.714 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|+||+|||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999988654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.07 E-value=0.00011 Score=57.27 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-++|+|+.|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.06 E-value=0.00012 Score=57.79 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+..+++|+||.||||||+.+.|+--+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00015 Score=56.18 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|+|..|+|||||+|.|+|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.05 E-value=8.8e-05 Score=58.20 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+||+|+.++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00022 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
|++|+++.|.||+|||||||.--++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999999866654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.03 E-value=0.0001 Score=56.86 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|++|||||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998854
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.02 E-value=0.00017 Score=56.21 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+++|+|+.|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.02 E-value=0.0049 Score=49.61 Aligned_cols=40 Identities=35% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
...++.++||+|+||||.+-=|+-.+. ..| .+++++.-|.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~-~~g-----~kV~lit~Dt 48 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKG-----RRPLLVAADT 48 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HTT-----CCEEEEECCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CcEEEEeccc
Confidence 346889999999999988744444333 233 3466666553
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.01 E-value=0.00016 Score=55.84 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.|+|+.||||||+.|.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.00 E-value=0.00015 Score=54.61 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999884
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.98 E-value=0.00016 Score=56.08 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999998543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.97 E-value=0.00016 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999997663
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.00019 Score=56.12 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+||+|..|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.96 E-value=0.00017 Score=54.74 Aligned_cols=41 Identities=10% Similarity=-0.032 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 024738 164 KQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 164 kqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~ 206 (263)
.-.-.++..++.+..+-++ |+|+.+-.+..++++.|.+..+
T Consensus 126 ~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 126 EMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp HHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHHHH
Confidence 3333455555666666666 8999999988888877765443
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.94 E-value=0.00017 Score=54.28 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|+|+.|||||||++.+++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999988764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.93 E-value=0.00022 Score=56.42 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+-.+++|+||.||||||+.+.|+.-+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998855
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.0002 Score=56.82 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|+.|||||||++.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.002 Score=52.14 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEEcCceEEEecC
Q 024738 64 GQLWMLLGPNGCGKSTLL-KVLAGLLKPTNGHVYVKRPKSFVFQN 107 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~~~~~~v~q~ 107 (263)
-.+++++||+|+||||.+ |+-+- +. ..| .+++++.-|
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~-~~-~~g-----~kV~lit~D 46 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQ-FE-QQG-----KSVMLAAGD 46 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHH-HH-TTT-----CCEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-HH-HCC-----CcEEEEecc
Confidence 358999999999999987 55443 33 333 345665554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.92 E-value=0.00017 Score=57.19 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.++.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577899999999999999999998743
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.91 E-value=0.00016 Score=56.50 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+||+|..++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.90 E-value=0.00029 Score=55.48 Aligned_cols=25 Identities=48% Similarity=0.666 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
++|-.++|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677888999999999999999994
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.88 E-value=0.00019 Score=62.22 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=27.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~ 92 (263)
+..+..+.|.|+.||||||||+.|++.++|..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 44556689999999999999999999998754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.88 E-value=0.00024 Score=54.82 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.|+|+.||||||+.|.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998655
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.0058 Score=49.40 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=26.5
Q ss_pred eCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLL-KVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
.+..+++++||+|+||||.+ |+-+-+. ..| .+++++--|.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~--~~~-----~kV~lit~Dt 49 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEG-----KSVVLAAADT 49 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH--HTT-----CCEEEEEECT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH--HCC-----CceEEEeecc
Confidence 34568899999999999976 5554432 223 3466666543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00024 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.83 E-value=0.00026 Score=57.45 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
++.+++++||+|+||||.+==|+-.+. ..| .+++++--|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g-----~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG-----KKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT-----CCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CcEEEEEecc
Confidence 578999999999999998733344433 233 3466666553
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.82 E-value=0.00035 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
++-+++.++|+.||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5568999999999999999988753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.81 E-value=0.00022 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
....+.|.||.|||||||.+.|++.+.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344688999999999999999999764
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.00032 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.78 E-value=0.00024 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999997543
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.76 E-value=0.00031 Score=55.32 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.74 E-value=0.00048 Score=52.63 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|+|+.|||||||++.+.+-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999999854
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.73 E-value=0.0004 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999996643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.72 E-value=0.0004 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998643
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.72 E-value=0.00027 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.-+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00018 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|+.++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00045 Score=55.32 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+|.+++|-|+-||||||+++.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00049 Score=54.78 Aligned_cols=30 Identities=37% Similarity=0.573 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC---CCCceEE
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL---KPTNGHV 95 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~---~p~~G~I 95 (263)
+++|.||.||||||+-+.|+--+ .-+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 89999999999999999998643 3345555
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.64 E-value=0.00048 Score=55.15 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|-||.||||||+.+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999998644
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00052 Score=55.41 Aligned_cols=28 Identities=36% Similarity=0.381 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
++|-+++|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999877543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.61 E-value=0.00045 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++|+|..|||||||++.+.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999885
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.61 E-value=0.00053 Score=55.44 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|-++-|.|.+||||||+.+.|.-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 68889999999999999999998743
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.60 E-value=0.00043 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+|..|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.59 E-value=0.00056 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.00032 Score=56.83 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998763
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.57 E-value=0.00055 Score=54.81 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
++||+|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.00067 Score=55.39 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
..+.|.||+|+||||++++++..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.56 E-value=0.00055 Score=55.40 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=32.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-h-cCCEEEEEe
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E-YADGAFYME 233 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~-~~d~v~~l~ 233 (263)
++.++++||- ..+-......++..+.... ....+|++++....+ . +.+|...+.
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~---~~~~~i~~~n~~~~i~~~l~sR~~~i~ 164 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFS---SNVRFILSCNYSSKIIEPIQSRCAIFR 164 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT---TTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCC---cceEEEeccCChhhchHhHhCcccccc
Confidence 6678999994 3445555666666665432 235677888877754 2 445554443
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.50 E-value=0.00068 Score=54.82 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
+|.+++|-|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999987665
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.50 E-value=0.00063 Score=54.06 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-++|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998763
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.00017 Score=54.89 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|+|+.|+|||||++.|+|-
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999984
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.47 E-value=0.00062 Score=52.13 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|||||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999997755
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.45 E-value=0.0008 Score=52.32 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999997544
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.45 E-value=0.00074 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+.++.|.||.|+|||||++.++--
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999887643
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.0007 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+.|+||.||||||..+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999854
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.00087 Score=53.75 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
|++|.++.|.||.|||||||.--++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999986655
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.00073 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998753
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.38 E-value=0.00077 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+||+|+-.||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999853
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00099 Score=53.42 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++||+|..||||||..+++..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999998643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.00086 Score=51.63 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998775
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.31 E-value=0.00093 Score=54.15 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.+.+.||.|+||||+.++++.-+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 47899999999999999999866543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.28 E-value=0.026 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998754
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.002 Score=49.35 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC-----CCCCceE
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL-----LKPTNGH 94 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl-----~~p~~G~ 94 (263)
++|+|..|+|||||++-+.+- +.|+-|.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 689999999999999876652 3455553
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.0012 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.|+||-||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.27 E-value=0.00092 Score=51.41 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999997764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.00051 Score=59.49 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.-++||+||.|||||||++.++..+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999988544
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.24 E-value=0.00091 Score=51.47 Aligned_cols=22 Identities=50% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|||||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998774
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.24 E-value=0.0014 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKV 83 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~ 83 (263)
|++|+++.|.|++|+|||||.--
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHH
Confidence 89999999999999999999743
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.001 Score=57.14 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=28.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNP 108 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~ 108 (263)
++||.|++||||||+.+.|..++.-..+. .++..+.+|.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~----~~v~~Is~D~ 120 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH----RRVELITTDG 120 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC----CCEEEEEGGG
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC----CceEEEeeee
Confidence 89999999999999999998876422110 1245566654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.001 Score=51.45 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987655
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.21 E-value=0.0011 Score=56.61 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++..+.++||.|||||+|.|+|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33456789999999999999999864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.21 E-value=0.0013 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
=.++|+||.||||||+.+.|+--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998743
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.15 E-value=0.0013 Score=58.24 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|+|..|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999954
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0014 Score=50.09 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|+|||||++.+.+
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0014 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
|++|.++.|.||+|||||||.-.++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7999999999999999999986665
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0012 Score=53.48 Aligned_cols=23 Identities=48% Similarity=0.728 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.+.||.|+||||+.+++++.+
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999854
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.10 E-value=0.0013 Score=50.22 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999976653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.09 E-value=0.0016 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0016 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999888763
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.08 E-value=0.0016 Score=52.09 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH-hCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVL-AGLL 88 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i-~Gl~ 88 (263)
+++|+++.|.|+.|+|||||.--+ +...
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998544 4443
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.08 E-value=0.00067 Score=57.70 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
++||.|++||||||+.+.|.-++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999887664
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0018 Score=53.91 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
...-+.|.||.|||||+|.+.|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 34458899999999999999999865
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.05 E-value=0.0016 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLK 82 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk 82 (263)
+++|+++.|.||.|||||||.-
T Consensus 33 lp~G~~~li~G~pGsGKT~~~l 54 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAH 54 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHH
Confidence 7999999999999999999975
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0014 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++++|+.|||||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 779999999999999876643
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.01 E-value=0.0019 Score=50.01 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..++|.+++|-|+=|||||||.|.++.-+
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 44789999999999999999999888655
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0013 Score=50.26 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999876653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0019 Score=49.59 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++|+|..|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 7899999999999999998864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.0017 Score=52.23 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 176 ACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 176 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
+..++|+||.- .+....+..+...+.+.. ....+++++++.+-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~---~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS---NSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT---TTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccc---cceeeeeccCchhhh
Confidence 35799999964 555566666666665542 235678888888764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0013 Score=50.20 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999988654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.98 E-value=0.0019 Score=52.41 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTN 92 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~ 92 (263)
...+.|.||.|+||||+++.++..++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 35789999999999999999998775443
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.97 E-value=0.0017 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++||+|...||||||++.|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0014 Score=50.34 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC-C----CCCCceEEE
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG-L----LKPTNGHVY 96 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G-l----~~p~~G~I~ 96 (263)
.++|+|..|||||||++-+.+ - +.|+.|...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~ 42 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce
Confidence 388999999999999986654 2 245666443
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.96 E-value=0.0016 Score=50.62 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|..|||||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986664
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0026 Score=48.98 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++++|..|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7899999999999999998754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0018 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|..|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999977765
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0024 Score=49.16 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=17.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999966543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.87 E-value=0.0012 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.++++|+.|||||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999988653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0017 Score=49.94 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988775
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0017 Score=49.41 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|||||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.002 Score=49.20 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.002 Score=49.14 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999977664
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.80 E-value=0.0022 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
-+.|.||.|||||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4789999999999999999974
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.78 E-value=0.0022 Score=48.71 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0019 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999977665
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0023 Score=48.85 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0025 Score=51.04 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=31.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
.+++++||- ..+.......++..|.+.. ....++++|++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~---~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYT---KNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTT---TTEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcc---cceeeccccCcHHHh
Confidence 469999996 5678888888888887653 235667777777654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.69 E-value=0.0043 Score=48.81 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=25.5
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 456666666 67889999999999999986654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0024 Score=49.31 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|..|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.68 E-value=0.0023 Score=53.36 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=23.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+.+..-+.|.||.|||||+|.+.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3444558899999999999999999976
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0024 Score=54.15 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=28.3
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
|.=+.|-+|+..+|+|++|+|||||+..|+.-.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 334688999999999999999999998887644
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.0023 Score=50.32 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|+.|||||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999987664
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.60 E-value=0.0027 Score=51.22 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHH-hCCCCCCce
Q 024738 66 LWMLLGPNGCGKSTLLKVL-AGLLKPTNG 93 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i-~Gl~~p~~G 93 (263)
.+.|+|.+|+|||||++-+ .+-..||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 4789999999999999765 455567777
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.60 E-value=0.0032 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+.-++||.||-|||||||+..+...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 4567999999999999999888753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0034 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 8999999999999999877543
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.56 E-value=0.0019 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+.++|+.|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999987644
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.003 Score=48.30 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHh-CC----CCCCce
Q 024738 66 LWMLLGPNGCGKSTLLKVLA-GL----LKPTNG 93 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~-Gl----~~p~~G 93 (263)
.++++|..|+|||||++-+. |- +.|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 37899999999999998655 43 245555
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0028 Score=48.82 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999977654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0033 Score=48.15 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999987764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.48 E-value=0.0038 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
++||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999954
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0032 Score=48.80 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|..|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999976654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0033 Score=48.10 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999977763
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.003 Score=48.46 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999987664
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0022 Score=49.37 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|+.|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987655
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.0036 Score=47.99 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++++|..|||||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999987664
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.39 E-value=0.0017 Score=55.64 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
|.-+.|.||-|+|||||+|.++++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 345789999999999999999999876
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.36 E-value=0.0033 Score=55.61 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++.++.+.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3567899999999999999998888653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0039 Score=47.65 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999986543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.32 E-value=0.0026 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=8.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986665
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.31 E-value=0.0045 Score=47.69 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=24.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLLKPTNGHVY 96 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 96 (263)
+.|+|..|+|||||++-+..-..|+.|...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~~ 34 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVE 34 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccEEE
Confidence 689999999999999888766677777543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.28 E-value=0.0046 Score=51.17 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=24.6
Q ss_pred eceeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 55 RDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 55 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+...+..+.| +.|.||.|||||+|++.++...
T Consensus 31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCCCCCce--eEEecCCCCCchHHHHHHHHHh
Confidence 3333444455 7899999999999999999854
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.25 E-value=0.0029 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.24 E-value=0.0046 Score=48.04 Aligned_cols=28 Identities=43% Similarity=0.627 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCce
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL--LKPTNG 93 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl--~~p~~G 93 (263)
.+.|+|..|+|||||++-+.-. ..||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 3689999999999999877322 357888
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.0045 Score=47.11 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999976653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.16 E-value=0.0047 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0044 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-+++|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.14 E-value=0.0037 Score=56.11 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=26.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcC----ceEEEecCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKR----PKSFVFQNP 108 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~----~~~~v~q~~ 108 (263)
-+.++||+|||||-|.|.|++++.. =-+..+. ..||+..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--CEEEeecceeeecceeecch
Confidence 5889999999999999999997632 1222221 356766664
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.0048 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
.++++|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999986655
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.0051 Score=47.81 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 88999999999999976553
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.02 E-value=0.0054 Score=47.53 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHH-HHhCC----CCCCceEE
Q 024738 67 WMLLGPNGCGKSTLLK-VLAGL----LKPTNGHV 95 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk-~i~Gl----~~p~~G~I 95 (263)
++++|..|+|||||++ .+.|- +.|+-|..
T Consensus 5 ivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~ 38 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN 38 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEECCCCcCHHHHHHHHHhCCCCCccCCceeec
Confidence 6899999999999996 44543 24554543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.90 E-value=0.0083 Score=47.04 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+||+|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0055 Score=47.82 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 024738 67 WMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~G 86 (263)
++|+|..|+|||||++-+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999965543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0062 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.+++|=|+=||||||+++.|+--+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999998755
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.83 E-value=0.012 Score=45.99 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=23.1
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 345444443 46678999999999999875544
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.01 Score=49.35 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=23.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
=|++|.++-|.||+|||||||+-.++..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 5789999999999999999998444443
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.0082 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
..+.++||+|+|||.|.+.|+-.+
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHhhc
Confidence 368899999999999999999875
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.60 E-value=0.0062 Score=51.00 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=23.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
=++.|.++-|.||+|||||||+-.++..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 4789999999999999999997544443
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.48 E-value=0.01 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
++++|.-.||||||++.|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999965
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.41 E-value=0.0093 Score=51.94 Aligned_cols=30 Identities=33% Similarity=0.670 Sum_probs=27.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++++.++.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 558889999999999999999999999764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.41 E-value=0.0092 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
+||+|..-+|||||++.|+|.-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.40 E-value=0.0069 Score=50.64 Aligned_cols=30 Identities=27% Similarity=0.549 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
=|+.|.++-|-||+|||||||.-.++...+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 468999999999999999999977666543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.40 E-value=0.011 Score=49.49 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-CC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK-PT 91 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~-p~ 91 (263)
.++++|.-.||||||++.|+|.-- |+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 378999999999999999999753 54
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.28 E-value=0.012 Score=49.27 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=26.2
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
|.=+.+-+|+..+|+|+.|+|||||+..|+-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 3446899999999999999999999766653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.26 E-value=0.017 Score=44.83 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=22.9
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 85 (263)
.++..-+. -.|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLVD-VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 34554444 456789999999999999874433
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.95 E-value=0.013 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+||+|..-||||||++.|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999975
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.95 E-value=0.013 Score=45.08 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC---CCCCce
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL---LKPTNG 93 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl---~~p~~G 93 (263)
+.|+|..|+|||||++-+..- ..||-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 689999999999999877543 245555
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.93 E-value=0.013 Score=48.93 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVL 84 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i 84 (263)
.+||+|+.|||||||+..|
T Consensus 4 Nv~iiGh~~~GKTtL~e~l 22 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEAL 22 (267)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHH
Confidence 4799999999999999988
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.012 Score=47.59 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
++.|.|.=||||||||+-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999887763
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.017 Score=46.70 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh-h-cCCEEEEE
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL-E-YADGAFYM 232 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~-~-~~d~v~~l 232 (263)
.+++|+||.=. |....+..++..+.+. .....+|++|++..-+ . +-+|..++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~---~~~~~~il~tn~~~~i~~~i~SRc~~i 169 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRCLQF 169 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC---CTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcC---CCCeEEEEEcCCccccChhHhhhhccc
Confidence 45999999854 8888887777777653 2346889999998764 2 34444443
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.63 E-value=0.018 Score=45.70 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 024738 66 LWMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~ 85 (263)
.+||+|.-+||||||++.|.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 37999999999999999985
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.48 E-value=0.017 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHH---hCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVL---AGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i---~Gl~~ 89 (263)
.+||+|+.|||||||+..| +|.+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 4799999999999999887 56553
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.021 Score=45.36 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 177 CKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 177 p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
.+++|+||. -.|...++..+++.+.+. .....+|++|++..-+
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep---~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEP---PAETWFFLATREPERL 151 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSC---CTTEEEEEEESCGGGS
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhh---cccceeeeeecChhhh
Confidence 679999975 445566676666666553 2345678899998753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.45 E-value=0.025 Score=44.56 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.+||+|.=.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998653
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.33 E-value=0.021 Score=45.63 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=30.6
Q ss_pred hhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCCcEEEEEccC
Q 024738 174 AEACKVLLLDELTTF-LDESDQFGVIEAVKNLLGDSGEVTALWVTHR 219 (263)
Q Consensus 174 ~~~p~llllDEPts~-LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~ 219 (263)
+...++|++|+--.= -++..+..+..++..+... |..+|++|..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~--~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL--EKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhc--cceEEEecCC
Confidence 558899999987432 2467777888888876543 4566776664
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.16 E-value=0.021 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.387 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
.+||||-.-+|||||++.|++.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999965
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=93.00 E-value=0.021 Score=47.84 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.8
Q ss_pred ceeceeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 024738 53 ILRDCSFSVPSGQLWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 53 iL~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 86 (263)
++ |.=+.|-+|+..+|+|++|+|||+|+..++-
T Consensus 57 ~I-D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 57 AI-DAMIPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TT-TTTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred EE-eccccccCCceEeeccCCCCChHHHHHHHHh
Confidence 44 3346899999999999999999999875443
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=0.022 Score=49.65 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=26.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 179 VLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 179 llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
++++||--+-..... +.+++.+.+ +.|..+++++.++..+
T Consensus 279 ~l~lDE~~~~~~~~~---l~~~l~~~R--k~Gv~~~l~~Qs~~ql 318 (433)
T d1e9ra_ 279 WLFIDELASLEKLAS---LADALTKGR--KAGLRVVAGLQSTSQL 318 (433)
T ss_dssp EEEESCGGGSCBCSS---HHHHHHHCT--TTTEEEEEEESCHHHH
T ss_pred EEEechHhhhcccHH---HHHHHHHhC--CCCceEEEEeccHHHH
Confidence 688899655433222 445565543 3478999999998765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.76 E-value=0.024 Score=48.41 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=23.5
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 58 SFSVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 58 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-...++| ++.+.||.|||||.|.+.|++.+
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3455565 55567999999999999999854
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=92.64 E-value=0.046 Score=46.84 Aligned_cols=32 Identities=31% Similarity=0.303 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYV 97 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~ 97 (263)
.+.|=|+=||||||+++.|+.-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 46788999999999999999977654443333
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.34 E-value=0.031 Score=47.49 Aligned_cols=24 Identities=46% Similarity=0.797 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
-.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcchHHHHHHHHHHHh
Confidence 367889999999999999999865
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.13 E-value=0.038 Score=47.93 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=22.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.++++. +.++||+|||||-|.|.|+.+.
T Consensus 65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp TCCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence 345655 5578999999999999999875
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.043 Score=43.46 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.-+.|+||.|.|||+++.-++..+
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHHH
Confidence 357899999999999998888644
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.89 E-value=0.053 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 024738 65 QLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
.-+.||||.|+|||+++.-++..+
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999998888654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.65 E-value=0.044 Score=43.21 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 024738 67 WMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~Gl 87 (263)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999988764
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.42 E-value=0.048 Score=45.16 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=27.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 024738 60 SVPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNG 93 (263)
Q Consensus 60 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G 93 (263)
..++-.++.|.||-++|||||+++|+.++ ++.|
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~ 132 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYG 132 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHh-cchh
Confidence 34667789999999999999999999987 4443
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.22 E-value=0.034 Score=46.69 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.8
Q ss_pred ceeeEEeCCCEEEEECCCCCcHHHHHHHH
Q 024738 56 DCSFSVPSGQLWMLLGPNGCGKSTLLKVL 84 (263)
Q Consensus 56 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i 84 (263)
|.=+.+-+|+..+|+|+.|+|||||+.-+
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~ 88 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDT 88 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHH
Confidence 44478999999999999999999997544
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=91.13 E-value=0.049 Score=46.16 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=17.8
Q ss_pred eCCCEEEEECCCCCcHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLL 81 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLl 81 (263)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999975
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=91.06 E-value=0.05 Score=46.52 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLK 89 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~ 89 (263)
.++|=|+=||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 377889999999999999987653
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=90.76 E-value=0.053 Score=46.41 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAGLLKPT 91 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~Gl~~p~ 91 (263)
.++|=|+=||||||+++.|+-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 47888999999999999999877544
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.63 E-value=0.061 Score=42.99 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCCEEE----EeCCCCCCCHHHHHHHHHHHHHHHh
Q 024738 166 RVAIAGALAEACKVLL----LDELTTFLDESDQFGVIEAVKNLLG 206 (263)
Q Consensus 166 Rv~lAral~~~p~lll----lDEPts~LD~~~~~~l~~~l~~l~~ 206 (263)
.+.+++++ .-+.+++ +|.....-|....+.+.+.+.++..
T Consensus 132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~ 175 (224)
T d1jnya3 132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMR 175 (224)
T ss_dssp HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHH
Confidence 34455544 5677777 8988877787777777777766543
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=90.63 E-value=0.053 Score=46.09 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCCcHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLL 81 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLl 81 (263)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999974
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=89.75 E-value=0.028 Score=40.30 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.0
Q ss_pred EeCCCEEEEECCCCCcHHHHH
Q 024738 61 VPSGQLWMLLGPNGCGKSTLL 81 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLl 81 (263)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999544
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.69 E-value=0.081 Score=44.98 Aligned_cols=19 Identities=37% Similarity=0.677 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCcHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLL 81 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLl 81 (263)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6788999999999999996
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.15 E-value=0.074 Score=44.02 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.6
Q ss_pred EEEEECCCCCcHHHHH
Q 024738 66 LWMLLGPNGCGKSTLL 81 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLl 81 (263)
.+.|.|+-||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4678899999999865
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=89.04 E-value=0.12 Score=38.32 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCcHHH-HHHHHhCC
Q 024738 64 GQLWMLLGPNGCGKST-LLKVLAGL 87 (263)
Q Consensus 64 Ge~~~l~G~NGsGKST-Llk~i~Gl 87 (263)
|.+..|+||=.||||| |++.+-..
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 6788999999999999 77877554
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.94 E-value=0.17 Score=43.43 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCcHHHHHH
Q 024738 63 SGQLWMLLGPNGCGKSTLLK 82 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk 82 (263)
.+.++.|.||-|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36799999999999999873
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=88.89 E-value=0.091 Score=42.92 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.0
Q ss_pred CEEEEECCCCCcHHHHH
Q 024738 65 QLWMLLGPNGCGKSTLL 81 (263)
Q Consensus 65 e~~~l~G~NGsGKSTLl 81 (263)
.-+.|+|+-||||||.|
T Consensus 15 ~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SEEEECCCTTSCHHHHH
T ss_pred CCEEEEeeCCccHHHHH
Confidence 34679999999999764
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=88.86 E-value=0.12 Score=41.41 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 024738 67 WMLLGPNGCGKSTLLKVLA 85 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i~ 85 (263)
++++|.-.+|||||+..|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999984
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=88.59 E-value=0.059 Score=44.19 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=20.6
Q ss_pred EeCCCEEEEECCCCCcHHH--HHHHHhC
Q 024738 61 VPSGQLWMLLGPNGCGKST--LLKVLAG 86 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKST--Llk~i~G 86 (263)
+.+|+.+.|.+|.|||||+ |..++..
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~ 33 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVRE 33 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4689999999999999997 3355543
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.06 E-value=0.14 Score=40.11 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=68.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEcCceEEEecCCCCcccccCHHHHHHhhccCCCCChHHHHHHHHHHH
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHVYVKRPKSFVFQNPDHQVVMPTVEADVAFGLGNLNLTHDEVRSKVAKAL 143 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~~~~~~v~q~~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~l 143 (263)
+-.+.+.||+|+||||+.+.++..+.-.. ...|+.....+ ...... .+.++++.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~------------~~h~D~~~i~~----------~~~~I~----Id~IR~i~ 68 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVEKFP------------PKASDVLEIDP----------EGENIG----IDDIRTIK 68 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSC------------CCTTTEEEECC----------SSSCBC----HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhccc------------cCCCCEEEEeC----------CcCCCC----HHHHHHHH
Confidence 45688999999999999999887542110 01111000000 000111 12344555
Q ss_pred HHcCCCcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEEccCcchh
Q 024738 144 DAVGMSNYLQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDESDQFGVIEAVKNLLGDSGEVTALWVTHRLEEL 223 (263)
Q Consensus 144 ~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~~~~~tiiivtH~~~~~ 223 (263)
+.+...... | +.+++|+|| .-.|...++..+++.|.+- ..++.+|++|++.+-+
T Consensus 69 ~~~~~~~~~--------~--------------~~KviIId~-ad~l~~~aqNaLLK~LEEP---p~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 69 DFLNYSPEL--------Y--------------TRKYVIVHD-CERMTQQAANAFLKALEEP---PEYAVIVLNTRRWHYL 122 (198)
T ss_dssp HHHTSCCSS--------S--------------SSEEEEETT-GGGBCHHHHHHTHHHHHSC---CTTEEEEEEESCGGGS
T ss_pred HHHhhCccc--------C--------------CCEEEEEeC-ccccchhhhhHHHHHHhCC---CCCceeeeccCChhhC
Confidence 555443321 1 358999999 4677888888888887764 2356789999998864
Q ss_pred -h-cCCEEEEE
Q 024738 224 -E-YADGAFYM 232 (263)
Q Consensus 224 -~-~~d~v~~l 232 (263)
. +-.|+..+
T Consensus 123 l~TI~SRC~~i 133 (198)
T d2gnoa2 123 LPTIKSRVFRV 133 (198)
T ss_dssp CHHHHTTSEEE
T ss_pred HHHHhcceEEE
Confidence 3 34444333
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.42 E-value=0.12 Score=44.27 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHH---hCCC
Q 024738 67 WMLLGPNGCGKSTLLKVL---AGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i---~Gl~ 88 (263)
+||+|.-|+|||||+..| +|.+
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i 44 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGII 44 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCC
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCc
Confidence 899999999999999888 4654
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=87.26 E-value=0.16 Score=41.22 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
.+.-+.|.|+.|+||+++.+.|...-..
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~ 49 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSDR 49 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCC
Confidence 4556889999999999999999875443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.08 E-value=0.18 Score=41.29 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 024738 64 GQLWMLLGPNGCGKSTLLKVLAGLLKP 90 (263)
Q Consensus 64 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 90 (263)
+-.++|+|-.-+|||||+|.|.|-...
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~ 138 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIA 138 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEEecCccchhhhhhhhhccceE
Confidence 345899999999999999999996543
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=86.89 E-value=0.099 Score=41.53 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=27.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 024738 61 VPSGQLWMLLGPNGCGKSTLLKVLAGLLKPTNGHV 95 (263)
Q Consensus 61 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 95 (263)
+++-.++.|.||-++|||++...|+.++. |.+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~---G~v 81 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ---GAV 81 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT---CEE
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC---CEE
Confidence 57889999999999999999999998863 654
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.68 E-value=0.14 Score=41.47 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHH---hCCC
Q 024738 67 WMLLGPNGCGKSTLLKVL---AGLL 88 (263)
Q Consensus 67 ~~l~G~NGsGKSTLlk~i---~Gl~ 88 (263)
++|+|.-++|||||+..| +|..
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~~~g~i 51 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILFLTGMV 51 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHHHTTSS
T ss_pred EEEEeeCCCCHHHHHHHHHHHcCCc
Confidence 799999999999999888 5544
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=86.48 E-value=0.13 Score=37.13 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=21.9
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 024738 173 LAEACKVLLLDELTTFLDESDQFGVIEAVKNL 204 (263)
Q Consensus 173 l~~~p~llllDEPts~LD~~~~~~l~~~l~~l 204 (263)
...+.+++|+||-=. +|..+...+...++.+
T Consensus 91 ~~~~~~~vIiDE~H~-~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 91 SGGAYDIIICDECHS-TDATSILGIGTVLDQA 121 (136)
T ss_dssp GGCCCSEEEEETTTC-CSHHHHHHHHHHHHHT
T ss_pred hhhcCCEEEEecccc-cCHHHHHHHHHHHHHH
Confidence 446789999999864 6777766665555543
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.46 E-value=0.17 Score=40.84 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=17.1
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 024738 66 LWMLLGPNGCGKSTLLKVL 84 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i 84 (263)
-++++|.-++|||||+..|
T Consensus 8 Ni~iiGHvD~GKsTl~~~l 26 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHL 26 (239)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 3789999999999999777
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.03 E-value=0.16 Score=44.11 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=17.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 024738 66 LWMLLGPNGCGKSTLLKVLAG 86 (263)
Q Consensus 66 ~~~l~G~NGsGKSTLlk~i~G 86 (263)
-..||||.|+|||+++.-++-
T Consensus 45 n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHHH
Confidence 367999999999999865553
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=85.65 E-value=0.22 Score=46.53 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
...+.+.|.|++|||||+-.|.|...
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~y 109 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQF 109 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999998887553
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.40 E-value=0.21 Score=46.82 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
...+.+.|.|+||||||+-.|.|+..+
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999886644
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.90 E-value=0.25 Score=36.18 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCcHHHHH-HHHhC
Q 024738 63 SGQLWMLLGPNGCGKSTLL-KVLAG 86 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLl-k~i~G 86 (263)
+|.+..|+||=.|||||-| +.+..
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~ 25 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRR 25 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEEecccCHHHHHHHHHHHH
Confidence 5889999999999999965 55543
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.71 E-value=0.27 Score=35.65 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHH-hCCCC
Q 024738 63 SGQLWMLLGPNGCGKSTLLKVL-AGLLK 89 (263)
Q Consensus 63 ~Ge~~~l~G~NGsGKSTLlk~i-~Gl~~ 89 (263)
.|=.+.+.|-+||||||+.+.| +-+.+
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4666788999999999999988 44444
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=84.30 E-value=0.25 Score=46.21 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
...+.+.|.|++|||||+-.|.|..-+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 457899999999999999988886543
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=82.64 E-value=0.29 Score=46.40 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
...+.+.|.|+||||||+-.|.|...+
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL 147 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYF 147 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999998888766543
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=81.32 E-value=0.33 Score=45.98 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGL 87 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 87 (263)
...+++.|.|+||||||.-.|.|...
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~y 144 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMY 144 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999987666553
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.54 E-value=0.23 Score=39.37 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=18.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHH
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKV 83 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~ 83 (263)
-.|+-+.|++|.|+|||+..-+
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~ 77 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLA 77 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHH
Confidence 3688899999999999976433
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=80.22 E-value=0.45 Score=44.60 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 024738 62 PSGQLWMLLGPNGCGKSTLLKVLAGLL 88 (263)
Q Consensus 62 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 88 (263)
...+.+.|.|++|||||+-.|.+...+
T Consensus 92 ~~~Q~IiisGeSGsGKTe~~k~il~~l 118 (730)
T d1w7ja2 92 ERNQSIIVSGESGAGKTVSAKYAMRYF 118 (730)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988886643
|