Citrus Sinensis ID: 024739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MDSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEPTPKCGIIIEGIELRPKNGR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccHHHHHHHccccHHHHHHccccHHHHccccccHHHHHHHcccccccccccccHHHHHHHHccccEEcccccccEEEEcccccEEEEEEccccEEEEcccccccEEccccccccccccEEEEEEEEEEEEEEEEcccccccEEEEEEEEEEcccccccEEccEEEEEEEccccEEEEEEEEcccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHHccccccccccccHHHHHHHHccccEEEccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEcccEcccccEEEEEEEEEEcccccccccccEEEEEEEccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
MDSPFAMFAQCISHIISlitpgnasklsstypafksvvdsdsvwekflpsdykkiISISSFSTSSLVTSLSKKKLYFHLcynpilinnntmsfaldhesgkkcymvgarglsitwgsspqhwkwlslpesrfpevaELKLVWCFEIMARIETKILSSKTNYATYLVFKFVetregfetrpiefdvyfegndthkmhsalldppanmpllslnrrdgwmeigigeffnengddgavicrvceseptpkcgiiiegielrpkngr
Flexible Loop (DISEMBL)
MDSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIEtkilssktnyATYLVFKFVetregfetrPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCeseptpkcgiiiegielrpkngr
Low Complexity Region (SEG)
MDSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYkkiisissfstsslvtslskkklYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEPTPKCGIIIEGIELRPKNGR
Disordered region (IsUnstruct)
****FAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEPTPKCGIIIEGIE*******
Disordered Region (DISOPRED)
**SPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKII****************KKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLD**********NRRDGWMEIGIGEFFNENGDDGAVICRVCESEPTPKCGIIIEGIELRPKN**
Disordered Region (DISEMBL)
MDSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEPTPKCGIIIEGIELRPKNGR
Disordered Region (DISPRO)
***PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSS*VTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEPTPKCGIIIEGIELRPKN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEPTPKCGIIIEGIELRPKNGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q9ZVQ6	272	F-box protein PP2-B10 OS=	yes	no	0.946	0.915	0.415	6e-50
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.965	0.793	0.394	3e-48
Q949S5	257	F-box protein PP2-B11 OS=	no	no	0.916	0.937	0.386	4e-46
Q9ZVR5	310	Putative F-box protein PP	no	no	0.920	0.780	0.400	1e-45
Q9FLU7	251	Putative F-box protein PP	no	no	0.912	0.956	0.379	1e-44
Q9ZVR0	307	Putative F-box protein PP	no	no	0.954	0.817	0.391	2e-44
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.920	0.793	0.380	3e-44
Q9FV02	294	F-box protein SKIP3 OS=Ar	no	no	0.908	0.812	0.400	4e-40
Q9ZVR1	284	F-box protein PP2-B5 OS=A	no	no	0.901	0.834	0.396	3e-38
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.942	0.738	0.348	3e-38

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 110/265 (41%), Positives = 159/265 (60%), Gaps = 16/265 (6%)

Query: 3   SPFAMFAQ-CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSF 61
           SPF  F + CIS+IIS   P +A   ++    F+S V SD +WEKFLP+DY+ +I  S  
Sbjct: 12  SPFDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRV 71

Query: 62  STSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQH 121
            +S       KK+LYF LC +P+L +++  S  L+  SGK+C M+ A  LSI WG +PQ+
Sbjct: 72  FSS-------KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQY 124

Query: 122 WKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPI 181
           W+W+ +PESRF +VA+L+ V  FEI  R  T++LS +T Y+ Y+VFK V+   GF+   I
Sbjct: 125 WQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAI 184

Query: 182 EFDVYFEGNDTHK----MHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENG--DDGAV 235
           E  V   G +  +       A+     N+ +    R DGWMEI +GEFFN+ G  D+  +
Sbjct: 185 EAAVGVVGQEPSRRLICFSEAIRRGRRNV-VKPKQREDGWMEIELGEFFNDGGIMDNDEI 243

Query: 236 ICRVCESEP-TPKCGIIIEGIELRP 259
                E++    KCG+II+GIE+RP
Sbjct: 244 EMSALETKQLNRKCGLIIQGIEIRP 268

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  191 bits (486), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/269 (39%), Positives = 151/269 (56%), Gaps = 15/269 (5%)

Query: 3   SPFAMFAQ-CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSF 61
           SPF +  + CIS+IIS  +P +A   +S    F+S V SD VW+KFLP +Y+ ++S S  
Sbjct: 59  SPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRV 118

Query: 62  STSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQH 121
             S       KK+LYF LC+NP+LI +   SF L+  SGK+C M+ ++ L ITWGSSP++
Sbjct: 119 FAS-------KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEY 171

Query: 122 WKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPI 181
           W+W+S+PESRF ++AEL  V  FEI  +   ++LS  T Y+ Y+VFK  +   G    P+
Sbjct: 172 WQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPV 231

Query: 182 EFDVYFEGNDTHKMHSALLDPPANMPLLSL-------NRRDGWMEIGIGEFFNENGDDGA 234
           E  +   G ++ K     + P                 R DGWME  +GEFFNE   D  
Sbjct: 232 EVGLGLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCDEI 291

Query: 235 VICRVCESEPTPKCGIIIEGIELRPKNGR 263
               +    P+ K G+II+GIE RP   +
Sbjct: 292 EFSVIEIKSPSWKSGLIIQGIEFRPTKSQ 320

Arabidopsis thaliana (taxid: 3702)

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  184 bits (468), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/256 (38%), Positives = 148/256 (57%), Gaps = 15/256 (5%)

Query: 11  CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSL 70
           CI+ I+SL TP +  +LS+    F+S   SD VW  FLP+D+      + F+  + + + 
Sbjct: 8   CIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP-----AGFAAPAGLPT- 61

Query: 71  SKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPES 130
            +K+L+F L  NP+LIN   +SF+L+ +SG KCYM+ AR L+I WG   ++W W+SLP +
Sbjct: 62  -RKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNT 120

Query: 131 RFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGN 190
           RF EVAEL +VW  EI  +I   +LS  T YA Y VFK+  +  GF  +P+E  +     
Sbjct: 121 RFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFR-QPVETSLVLADT 179

Query: 191 DTHK------MHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESE- 243
           ++        M S + D         + RRDGW E+ +G+FF   GD G +   + E++ 
Sbjct: 180 ESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLKETKG 239

Query: 244 PTPKCGIIIEGIELRP 259
           P  K G+I+ GIE+RP
Sbjct: 240 PYEKKGLIVYGIEIRP 255

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/257 (40%), Positives = 146/257 (56%), Gaps = 15/257 (5%)

Query: 11  CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSL 70
           CIS+IIS  +P +A   +S    F+S V+SDSVW+KFLPSDY  ++  S   +S      
Sbjct: 54  CISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSS------ 107

Query: 71  SKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVG-ARGLSITWGSSPQHWKWLSLPE 129
            KK+LYF +C NP+L+ +   SF L+ E+GKKC+M+   + + ITW S+PQ+W+W+S+PE
Sbjct: 108 -KKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPE 166

Query: 130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEG 189
           +RF EV EL  V  FE+   + TK LS  T Y+ Y+VFK           P+E  V   G
Sbjct: 167 ARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVG 226

Query: 190 NDTHKMHSALLDPPANMP-------LLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCES 242
            ++ + H   + P                 R+DGWME  +G+FFNE+G D      +   
Sbjct: 227 QESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGCDVVDTSILEIK 286

Query: 243 EPTPKCGIIIEGIELRP 259
            P  K G+II+GIE RP
Sbjct: 287 TPYWKRGLIIQGIEFRP 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 143/253 (56%), Gaps = 13/253 (5%)

Query: 10  QCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTS 69
           +CI+ +IS  +P +A ++S+     +S  DS++ WE+FLPSDY+  I  S       ++ 
Sbjct: 9   ECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNS-------LSR 61

Query: 70  LSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPE 129
            S K+L+   C +P+LI +   SF ++  SGKKC+M+ AR L I W  SP+ W W+S+P+
Sbjct: 62  FSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPD 121

Query: 130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETRE-GFETRPIEFDVYFE 188
           SRF EVA L +V  FEI  +I T +LS  TNY+ YLVFK  E    GFE+ P+E      
Sbjct: 122 SRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSFRST 181

Query: 189 GNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEPTPKC 248
             + +      L           +R DGW+EI +GE++    D+   +  +   E   K 
Sbjct: 182 RTEVYNNRRVFLKSGTQE-----SREDGWLEIELGEYYVGFDDEEIEMSVLETREGGWKG 236

Query: 249 GIIIEGIELRPKN 261
           GII++GIE+RPK 
Sbjct: 237 GIIVQGIEIRPKE 249

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR0|PP2B6_ARATH Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=4 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 152/271 (56%), Gaps = 20/271 (7%)

Query: 3   SPFAMFAQ-CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIIS-ISS 60
           SPF    + CIS+IIS  +P +    +S   +F   V  DS+WEKFLPS+Y+ +I     
Sbjct: 43  SPFDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRV 102

Query: 61  FSTSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQ 120
           FS        SKK LYF LCY+P+L+ +   SF L+  SGKKC ++ A+ L IT G++P+
Sbjct: 103 FS--------SKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPE 154

Query: 121 HWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRP 180
           +W+W+ L ES F +V EL     F++   + T+ILS  T+Y+ Y+V+K  + R G    P
Sbjct: 155 YWQWIELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLP 214

Query: 181 IEFDVYFEGNDTHKMHSALLDP-------PANMPLLSLNRRDGWMEIGIGEFFNENGD-- 231
           I+  V F+G +  K      +        P    + S  R DGWME  IG+FFN+ G   
Sbjct: 215 IQVGVGFKGQEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMG 274

Query: 232 -DGAVICRVCESEPTPKCGIIIEGIELRPKN 261
            D   +  V  + P  KCG++IEGIE RPK+
Sbjct: 275 FDEVEVSIVDVTSPNLKCGVMIEGIEFRPKD 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/276 (38%), Positives = 147/276 (53%), Gaps = 34/276 (12%)

Query: 10  QCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTS 69
           +C+S I+S  +P +A  L+S    F S V SD VWEKF+P +Y+ +IS      S     
Sbjct: 42  ECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLIS-----QSRAFKF 96

Query: 70  LSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPE 129
           LSKK+LYF LC   +LI++   S  ++  + K+C M+ A  L+I WG+SPQ W+W+  P+
Sbjct: 97  LSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQ 156

Query: 130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFET----------- 178
           +RF  VAEL  V  FEI  RI ++++S KT Y+ Y+V+K +    GFE            
Sbjct: 157 ARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVG 216

Query: 179 --------RPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENG 230
                   R I FD   +     +     L  P         R+DGWMEI IGEFFNE G
Sbjct: 217 QDLEESCRRYICFDETMDEQFRRRDRGKNLVKPE-------RRKDGWMEIKIGEFFNEGG 269

Query: 231 ---DDGAVICRVCESEPTPKCGIIIEGIELRPKNGR 263
              DD   +  +   +   K G+II+GIE+RP N R
Sbjct: 270 LLNDDEIEMVALEAKQRHWKRGLIIQGIEIRPTNIR 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FV02|SKIP3_ARATH F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/262 (40%), Positives = 141/262 (53%), Gaps = 23/262 (8%)

Query: 11  CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSL 70
           CIS+IIS  +P +A   ++    F+S V SD VWEKFLP+DY+ +I      T S V S 
Sbjct: 31  CISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLI------TPSRVFS- 83

Query: 71  SKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSIT-WGSSPQHWKWLSLPE 129
           SKK+LYF LC +P+LI +  MS  L+  SGK+C M+ A  ++++      Q + W+  PE
Sbjct: 84  SKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPE 143

Query: 130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEG 189
           SRF  VA L+  + FE   R+ T++LS +T Y+ Y+VFK  +   GF+   IE  V   G
Sbjct: 144 SRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVGIVG 203

Query: 190 N---------DTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENG---DDGAVIC 237
                     DTH    A        P L   R DGWME  IGEF+NE G    D   I 
Sbjct: 204 EESFRSFICFDTHGKGQARKRKVVAKPEL---REDGWMETEIGEFYNEGGLMSSDEVEIS 260

Query: 238 RVCESEPTPKCGIIIEGIELRP 259
            V       K G++I GIE+RP
Sbjct: 261 TVEGKYAQQKRGLVILGIEIRP 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR1|PP2B5_ARATH F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP2B5 PE=2 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/262 (39%), Positives = 144/262 (54%), Gaps = 25/262 (9%)

Query: 10  QCISHIISLI-TPGNASKLSSTYPAFKSVVDSDSVWEKFLPS-DYKKIISISSFSTSSLV 67
            C++ I S   TP +A   +    +F    +SDSVWEKFLP  DY  ++  S   +S   
Sbjct: 40  DCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPPPDYVSLLPKSRVFSS--- 96

Query: 68  TSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSL 127
               KK+LYF LC +P   +N  MSF LD  SGKKC M+ A+ L I+   +P++WKW+S+
Sbjct: 97  ----KKELYFALC-DPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISI 151

Query: 128 PESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYF 187
           PESRF EV EL  +  F+I   + T+I+S  T+Y+ Y+V+       GF+T PI+  V F
Sbjct: 152 PESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSPIQAGVGF 211

Query: 188 EGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDG--AVICRVCESEPT 245
           +    H M    +         S  R+DGWME  IG+F+NE G  G   +   V +    
Sbjct: 212 Q---RHGMSKTFIR------FDSKKRQDGWMEAKIGDFYNEGGLIGFNLIEVSVVDVARY 262

Query: 246 P----KCGIIIEGIELRPKNGR 263
           P    K G+IIEGIE RPK+ R
Sbjct: 263 PHMNMKSGLIIEGIEFRPKDSR 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 160/307 (52%), Gaps = 59/307 (19%)

Query: 6   AMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSS 65
           A+   CIS +IS  +P +A  ++S   + KS   SD VWE FLPS+Y  ++  S+     
Sbjct: 34  ALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSA----- 88

Query: 66  LVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWL 125
               LSKK+++  L  N +L+ N   SF ++  SGKKCYM+ A  L+I WG SP +WKW+
Sbjct: 89  --NHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query: 126 SLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETRE-GFETRPIEF- 183
           ++PES+F +VAEL+ V  FE+  +I   +LS  T+Y+ Y+VFK    R  GF+  P+E  
Sbjct: 147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query: 184 -----------DVYFE-GN-DTHKMHS-------ALLDPPANM--PLLSL---------- 211
                       VYFE GN D+    S       A++     M  P + +          
Sbjct: 207 VGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEG 266

Query: 212 ------------NRRDGWMEIGIGEFFNEN---GDDGA--VICRVCESEPTP-KCGIIIE 253
                        R DGW E+ +G+F+  N   GDDG+  +   + E++    K G+II+
Sbjct: 267 ERERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQ 326

Query: 254 GIELRPK 260
           GIE+RP+
Sbjct: 327 GIEIRPE 333

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
118485882	267	unknown [Populus trichocarpa]	1.0	0.985	0.524	1e-67
224053426	243	f-box family protein [Populus trichocarp	0.916	0.991	0.498	4e-63
449433185	267	PREDICTED: putative F-box protein PP2-B1	0.950	0.936	0.492	7e-63
449487520	268	PREDICTED: putative F-box protein PP2-B1	0.958	0.940	0.474	1e-60
449432438	268	PREDICTED: putative F-box protein PP2-B1	0.958	0.940	0.471	7e-60
449518583	267	PREDICTED: putative F-box protein PP2-B1	0.958	0.943	0.461	7e-59
296088861	312	unnamed protein product [Vitis vinifera]	0.946	0.798	0.431	4e-52
225470220	277	PREDICTED: F-box protein PP2-B10-like [V	0.958	0.909	0.437	4e-51
296088859	311	unnamed protein product [Vitis vinifera]	0.958	0.810	0.437	5e-51
225470226	299	PREDICTED: F-box protein PP2-B1-like [Vi	0.946	0.832	0.407	3e-50

>gi|118485882|gb|ABK94787.1| unknown [Populus trichocarpa]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/267 (52%), Positives = 180/267 (67%), Gaps = 4/267 (1%)

Query: 1   MDSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISS 60
           MD    +  +C++HIIS  +P +A   +     F+S  DSD+VW+ FLPSD+ +IIS S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  FSTSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQ 120
            S+SS +T+LSKK+LYFHLC NPIL+NN  MSFAL+   GKKCYM+GARGLSITWG +P 
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 121 HWKWLSLP-ESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETR 179
           +W W  LP +SRF EVAEL+ VW  ++  RI+ KI S KT YA YLVFK  ++  GF+ R
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 180 PIEFDVYFEGN-DTHKMHSALLDPPA-NMPLLSLNRRDGWMEIGIGEFFNENGDDGAVIC 237
            +E  V FE +    K+H  L  PP  +MP L   R DGWMEI +GEFF +N DDG+V+ 
Sbjct: 181 LVELSVNFEESVGEEKLHVFLDVPPDYDMPPLPRERSDGWMEIEMGEFFYDNEDDGSVVA 240

Query: 238 RVCESEP-TPKCGIIIEGIELRPKNGR 263
            + E +  T K G+IIEGIE RPK  R
Sbjct: 241 YLREVDNYTTKNGLIIEGIEFRPKEVR 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053426|ref|XP_002297813.1| f-box family protein [Populus trichocarpa] gi|222845071|gb|EEE82618.1| f-box family protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 132/265 (49%), Positives = 170/265 (64%), Gaps = 24/265 (9%)

Query: 1   MDSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISS 60
           MD    +  +C++HIIS  +P +A   +     F+S  DSD+VW+ FLPSD+ +IIS S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  FSTSSLVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQ 120
            S+SS +T+LSKK+LYFHLC NPIL+NN  MSFAL+   GKKCYM+GARGLSITWG +P 
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 121 HWKWLSLP-ESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETR 179
           +W W  LP +SRF EVAEL+ VW  ++  RI+ KI S KT YA YLVFK  ++  GF+ R
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 180 PIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRV 239
            +E  V FE                       +R DGWMEI +GEFF +N DDG+V+  +
Sbjct: 181 LVELSVNFEE----------------------SRSDGWMEIEMGEFFYDNEDDGSVVAYL 218

Query: 240 CESEP-TPKCGIIIEGIELRPKNGR 263
            E +  T K G+IIEGIE RPK  R
Sbjct: 219 REVDNYTTKNGLIIEGIEFRPKEVR 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433185|ref|XP_004134378.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 128/260 (49%), Positives = 170/260 (65%), Gaps = 10/260 (3%)

Query: 9   AQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVT 68
           A+CIS I++  +P +A + +   PAF+S  DSD++W  FLPSDY++IIS +S S++S   
Sbjct: 8   AECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQASSSSTSSFL 67

Query: 69  SLS-KKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSL 127
           +   KK LY  L  + + I +   SF L+ ESGKKCYM+GAR L I WGSSP +W W S+
Sbjct: 68  NSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLEIVWGSSPAYWTWQSI 127

Query: 128 PESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVE---TREGFETRPIEFD 184
           P SRF EVAEL+ VW  EI  +IE + LS KT YA Y VFKF E     +GF T+P+  +
Sbjct: 128 PTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKFKEGDFQHDGFGTKPVSLE 187

Query: 185 VYFE----GNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVC 240
           VYFE    G D  KM   LLDPP   P++   R DGWME+ +GEFFNE GDDG +I  + 
Sbjct: 188 VYFEGEEVGEDGTKM--VLLDPPEGSPVVCKERSDGWMEVEMGEFFNELGDDGIIIFHLM 245

Query: 241 ESEPTPKCGIIIEGIELRPK 260
           + +   K G+I+EG+E+RPK
Sbjct: 246 QIDRLRKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487520|ref|XP_004157667.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/259 (47%), Positives = 171/259 (66%), Gaps = 7/259 (2%)

Query: 9   AQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVT 68
           A+C+S I++  +P +A + +   PAF+S  DSD++W  FLPSDY++IIS +S S++S   
Sbjct: 8   AECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQASSSSTSSFL 67

Query: 69  SLS-KKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSL 127
           +   KK LYF L  + + I +   SF L+ ESGKKCYM+GAR L I WG+SPQ+W W S+
Sbjct: 68  NSLSKKALYFRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSPQYWTWKSI 127

Query: 128 PESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVE---TREGFETRPIEFD 184
           P SRF EVAEL++VW  EI  +IE + LS KT YA Y VFK VE   +R GF+ RP+  +
Sbjct: 128 PTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGFQIRPVSLE 187

Query: 185 VYFEGNDTHK--MHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCES 242
           V+FEG +  +      +LDPP    ++   R DGWME+ +GE FNE GDDG +I  + + 
Sbjct: 188 VHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGTIIFHLKQI 247

Query: 243 EP-TPKCGIIIEGIELRPK 260
           +    K G+I+EGIE+RPK
Sbjct: 248 DNFISKGGLIVEGIEIRPK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432438|ref|XP_004134006.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 122/259 (47%), Positives = 170/259 (65%), Gaps = 7/259 (2%)

Query: 9   AQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVT 68
           A+C+S I++  +P +A + +   PAF+S  DSD++W  FLPSDY++IIS +S S++S   
Sbjct: 8   AECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQASSSSTSSFL 67

Query: 69  SLS-KKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSL 127
           +   KK LY  L  + + I +   SF L+ ESGKKCYM+GAR L I WG+SPQ+W W S+
Sbjct: 68  NSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSPQYWTWKSI 127

Query: 128 PESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVE---TREGFETRPIEFD 184
           P SRF EVAEL++VW  EI  +IE + LS KT YA Y VFK VE   +R GF+ RP+  +
Sbjct: 128 PTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGFQIRPVSLE 187

Query: 185 VYFEGNDTHK--MHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCES 242
           V+FEG +  +      +LDPP    ++   R DGWME+ +GE FNE GDDG +I  + + 
Sbjct: 188 VHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGTIIFHLKQI 247

Query: 243 EP-TPKCGIIIEGIELRPK 260
           +    K G+I+EGIE+RPK
Sbjct: 248 DNFISKGGLIVEGIEIRPK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518583|ref|XP_004166316.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 167/258 (64%), Gaps = 6/258 (2%)

Query: 9   AQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVT 68
           A+C+S I++  +P +A + +   PAF+S  DSD++W  FLPSDY++IIS +S S++S   
Sbjct: 8   AECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQASSSSTSSFL 67

Query: 69  SLS-KKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSL 127
           +   KK LY  L  + + I +    F L+  SGKKCYM+GAR L I WGSSP++W W S+
Sbjct: 68  NSLSKKALYLRLSDHLLFIGSGNSGFVLEKGSGKKCYMIGARDLEIVWGSSPEYWTWQSI 127

Query: 128 PESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVE---TREGFETRPIEFD 184
           P SRF EVAEL+ VW  EI  +IE + LS KT YA Y VFK VE    R  FET P+  +
Sbjct: 128 PTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKLVEDNFCRHVFETTPVSLE 187

Query: 185 VYFEGNDTH--KMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCES 242
           V+FEG +    +    +LDP     ++ + R DGWME+ +GEFFNE GDDG++I  + + 
Sbjct: 188 VHFEGAEVEEDRRKRVILDPLEGSSVVCVERSDGWMEVEMGEFFNECGDDGSIIFHLMQI 247

Query: 243 EPTPKCGIIIEGIELRPK 260
           +   K G+I+EG+E+RPK
Sbjct: 248 DRLRKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088861|emb|CBI38325.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/264 (43%), Positives = 155/264 (58%), Gaps = 15/264 (5%)

Query: 10  QCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTS 69
           +C++ IIS  +P +AS++S      +   DSD+VWE FLP D++ II+ ++ S+ + V S
Sbjct: 50  ECVTEIISRTSPPDASRMSVVSTDLRFAADSDAVWEGFLPKDFQSIIAGAAGSSRAEVQS 109

Query: 70  LSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPE 129
             KK+LY  L   PILI     SF+++  SGKKCYM+ AR L+I WG +P +WKW+SLP+
Sbjct: 110 --KKELYLRLSDEPILIEGGLKSFSIEKRSGKKCYMIAARALTIEWGDTPMYWKWISLPQ 167

Query: 130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEG 189
           SRF EVAEL  V  FEI  RI T +L  KTNYA YLVF       GFE  P+E  +   G
Sbjct: 168 SRFKEVAELISVCWFEIRGRINTCLLCLKTNYAAYLVFNSTTETYGFEYHPVEVSIGIIG 227

Query: 190 NDTHKMHSALLDPPANM----PLLSLN--------RRDGWMEIGIGEFFNENGDDGAVIC 237
                  S  L+P        P++           R DGW+EI +GEFFNE GD+   + 
Sbjct: 228 GRIS-TQSVYLNPSKTQTRRFPVVPRRGNCQHPKKREDGWLEIELGEFFNEGGDEELEMS 286

Query: 238 RVCESEPTPKCGIIIEGIELRPKN 261
            +       KCG+II+GIE+RPK+
Sbjct: 287 VLEVKAGNWKCGLIIQGIEIRPKD 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470220|ref|XP_002270580.1| PREDICTED: F-box protein PP2-B10-like [Vitis vinifera]

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 112/256 (43%), Positives = 162/256 (63%), Gaps = 4/256 (1%)

Query: 6   AMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSS 65
           A+   CI+ I++  +  +A ++S+  P F S  +SD++WE FLP+DY++II  SS S++ 
Sbjct: 22  ALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSAR 81

Query: 66  LVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWL 125
              S SKK+L+F LC +P+LI+    SF LD ESGKKCYM+ AR L+I W  +P++W W+
Sbjct: 82  QDFS-SKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWI 140

Query: 126 SLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDV 185
           S P+SRF EVA LK+VW F I  ++ T +LS  TNYA YL+F+  +  +GFE  PIE  +
Sbjct: 141 SPPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSI 200

Query: 186 YFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEP- 244
              G +T K     LDP  ++   +  R DGW E+ +GEFFNE  +   +   + E    
Sbjct: 201 GVTGGETAK-KVIYLDPEHDIS-PNPTRIDGWYEVELGEFFNEGRESVELEMSIMEVNTF 258

Query: 245 TPKCGIIIEGIELRPK 260
             K G++IEGIE+RPK
Sbjct: 259 IGKSGLLIEGIEIRPK 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088859|emb|CBI38323.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 112/256 (43%), Positives = 162/256 (63%), Gaps = 4/256 (1%)

Query: 6   AMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSS 65
           A+   CI+ I++  +  +A ++S+  P F S  +SD++WE FLP+DY++II  SS S++ 
Sbjct: 56  ALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSAR 115

Query: 66  LVTSLSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWL 125
              S SKK+L+F LC +P+LI+    SF LD ESGKKCYM+ AR L+I W  +P++W W+
Sbjct: 116 QDFS-SKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWI 174

Query: 126 SLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDV 185
           S P+SRF EVA LK+VW F I  ++ T +LS  TNYA YL+F+  +  +GFE  PIE  +
Sbjct: 175 SPPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSI 234

Query: 186 YFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEP- 244
              G +T K     LDP  ++   +  R DGW E+ +GEFFNE  +   +   + E    
Sbjct: 235 GVTGGETAK-KVIYLDPEHDIS-PNPTRIDGWYEVELGEFFNEGRESVELEMSIMEVNTF 292

Query: 245 TPKCGIIIEGIELRPK 260
             K G++IEGIE+RPK
Sbjct: 293 IGKSGLLIEGIEIRPK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470226|ref|XP_002270412.1| PREDICTED: F-box protein PP2-B1-like [Vitis vinifera]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/285 (40%), Positives = 155/285 (54%), Gaps = 36/285 (12%)

Query: 10  QCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTS 69
           +C++ IIS  +P +AS++S      +   DSD+VWE FLP D++ II+ ++ S+ + V S
Sbjct: 16  ECVTEIISRTSPPDASRMSVVSTDLRFAADSDAVWEGFLPKDFQSIIAGAAGSSRAEVQS 75

Query: 70  LSKKKLYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPE 129
             KK+LY  L   PILI     SF+++  SGKKCYM+ AR L+I WG +P +WKW+SLP+
Sbjct: 76  --KKELYLRLSDEPILIEGGLKSFSIEKRSGKKCYMIAARALTIEWGDTPMYWKWISLPQ 133

Query: 130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEG 189
           SRF EVAEL  V  FEI  RI T +L  KTNYA YLVF       GFE  P+E  +   G
Sbjct: 134 SRFKEVAELISVCWFEIRGRINTCLLCLKTNYAAYLVFNSTTETYGFEYHPVEVSIGIIG 193

Query: 190 NDTHKMHSALLDPPA----------------NMPLLSL-----------------NRRDG 216
                  S  L+P                  N  L  L                  R DG
Sbjct: 194 GRIS-TQSVYLNPSKTQTRRFPVVPRRIGRFNRGLTQLMGLQASVPAGGNCQHPKKREDG 252

Query: 217 WMEIGIGEFFNENGDDGAVICRVCESEPTPKCGIIIEGIELRPKN 261
           W+EI +GEFFNE GD+   +  +       KCG+II+GIE+RPK+
Sbjct: 253 WLEIELGEFFNEGGDEELEMSVLEVKAGNWKCGLIIQGIEIRPKD 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.946	0.915	0.392	3.1e-44
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.950	0.781	0.377	2.5e-42
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.916	0.937	0.382	1.1e-41
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.912	0.774	0.389	7.5e-41
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.958	0.820	0.370	3.3e-40
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.904	0.948	0.379	3.7e-39
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.673	0.526	0.389	6.5e-39
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.946	0.816	0.364	4.3e-38
TAIR|locus:2056271	284	PP2-B5 "phloem protein 2-B5" [	0.897	0.830	0.379	4.6e-34
TAIR|locus:2011791	282	PP2-B14 "phloem protein 2-B14"	0.650	0.606	0.337	3.4e-32

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 104/265 (39%), Positives = 149/265 (56%)

Query:     3 SPFAMFAQ-CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXX 61
             SPF  F + CIS+IIS   P +A   ++    F+S V SD +WEKFLP+DY         
Sbjct:    12 SPFDSFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRV 71

Query:    62 XXXXXXXXXXXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQH 121
                           YF LC +P+L +++  S  L+  SGK+C M+ A  LSI WG +PQ+
Sbjct:    72 FSSKKEL-------YFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQY 124

Query:   122 WKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPI 181
             W+W+ +PESRF +VA+L+ V  FEI  R  T++LS +T Y+ Y+VFK V+   GF+   I
Sbjct:   125 WQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAI 184

Query:   182 EFDVYFEGNDTHK----MHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENG--DDGAV 235
             E  V   G +  +       A+     N+ +    R DGWMEI +GEFFN+ G  D+  +
Sbjct:   185 EAAVGVVGQEPSRRLICFSEAIRRGRRNV-VKPKQREDGWMEIELGEFFNDGGIMDNDEI 243

Query:   236 ICRVCESEP-TPKCGIIIEGIELRP 259
                  E++    KCG+II+GIE+RP
Sbjct:   244 EMSALETKQLNRKCGLIIQGIEIRP 268

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 100/265 (37%), Positives = 140/265 (52%)

Query:     3 SPFAMFAQ-CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXX 61
             SPF +  + CIS+IIS  +P +A   +S    F+S V SD VW+KFLP +Y         
Sbjct:    59 SPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRV 118

Query:    62 XXXXXXXXXXXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQH 121
                           YF LC+NP+LI +   SF L+  SGK+C M+ ++ L ITWGSSP++
Sbjct:   119 FASKKEL-------YFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEY 171

Query:   122 WKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPI 181
             W+W+S+PESRF ++AEL  V  FEI  +   ++LS  T Y+ Y+VFK  +   G    P+
Sbjct:   172 WQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPV 231

Query:   182 EFDVYFEGNDTHKMHSALLDPPANMPLLSLN-------RRDGWMEIGIGEFFNENGDDGA 234
             E  +   G ++ K     + P                 R DGWME  +GEFFNE   D  
Sbjct:   232 EVGLGLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCDEI 291

Query:   235 VICRVCESEPTPKCGIIIEGIELRP 259
                 +    P+ K G+II+GIE RP
Sbjct:   292 EFSVIEIKSPSWKSGLIIQGIEFRP 316

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 98/256 (38%), Positives = 138/256 (53%)

Query:    11 CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXXXXXXXXXXX 70
             CI+ I+SL TP +  +LS+    F+S   SD VW  FLP+D+                  
Sbjct:     8 CIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLPTRKQL-- 65

Query:    71 XXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPES 130
                  +F L  NP+LIN   +SF+L+ +SG KCYM+ AR L+I WG   ++W W+SLP +
Sbjct:    66 -----FFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNT 120

Query:   131 RFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYF--- 187
             RF EVAEL +VW  EI  +I   +LS  T YA Y VFK+  +  GF  +P+E  +     
Sbjct:   121 RFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFR-QPVETSLVLADT 179

Query:   188 EGNDT---HKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESE- 243
             E  D      M S + D         + RRDGW E+ +G+FF   GD G +   + E++ 
Sbjct:   180 ESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLKETKG 239

Query:   244 PTPKCGIIIEGIELRP 259
             P  K G+I+ GIE+RP
Sbjct:   240 PYEKKGLIVYGIEIRP 255

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 101/259 (38%), Positives = 141/259 (54%)

Query:    11 CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXXXXXXXXXXX 70
             CIS+IIS  +P +A   +S    F+S V+SDSVW+KFLPSDY                  
Sbjct:    54 CISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSSKKEL-- 111

Query:    71 XXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGAR-GLSITWGSSPQHWKWLSLPE 129
                  YF +C NP+L+ +   SF L+ E+GKKC+M+  +  + ITW S+PQ+W+W+S+PE
Sbjct:   112 -----YFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPE 166

Query:   130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEG 189
             +RF EV EL  V  FE+   + TK LS  T Y+ Y+VFK           P+E  V   G
Sbjct:   167 ARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVG 226

Query:   190 NDTHKMHSALLDPPANMP-------LLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCES 242
              ++ + H   + P                 R+DGWME  +G+FFNE+G D  V   + E 
Sbjct:   227 QESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGCD-VVDTSILEI 285

Query:   243 EPTP--KCGIIIEGIELRP 259
             + TP  K G+II+GIE RP
Sbjct:   286 K-TPYWKRGLIIQGIEFRP 303

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 100/270 (37%), Positives = 143/270 (52%)

Query:     3 SPFAMFAQ-CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXX 61
             SPF    + CIS+IIS  +P +    +S   +F   V  DS+WEKFLPS+Y         
Sbjct:    43 SPFDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRV 102

Query:    62 XXXXXXXXXXXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQH 121
                           YF LCY+P+L+ +   SF L+  SGKKC ++ A+ L IT G++P++
Sbjct:   103 FSSKKDL-------YFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEY 155

Query:   122 WKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPI 181
             W+W+ L ES F +V EL     F++   + T+ILS  T+Y+ Y+V+K  + R G    PI
Sbjct:   156 WQWIELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPI 215

Query:   182 EFDVYFEGNDTHKMHSAL---LDPPANMP----LLSLNRRDGWMEIGIGEFFNENG---D 231
             +  V F+G +  K         D     P    + S  R DGWME  IG+FFN+ G    
Sbjct:   216 QVGVGFKGQEMPKQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGF 275

Query:   232 DGAVICRVCESEPTPKCGIIIEGIELRPKN 261
             D   +  V  + P  KCG++IEGIE RPK+
Sbjct:   276 DEVEVSIVDVTSPNLKCGVMIEGIEFRPKD 305

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 96/253 (37%), Positives = 140/253 (55%)

Query:    10 QCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXXXXXXXXXX 69
             +CI+ +IS  +P +A ++S+     +S  DS++ WE+FLPSDY                 
Sbjct:     9 ECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFSNKQL- 67

Query:    70 XXXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPE 129
                   +   C +P+LI +   SF ++  SGKKC+M+ AR L I W  SP+ W W+S+P+
Sbjct:    68 ------FLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPD 121

Query:   130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETRE-GFETRPIEFDVYFE 188
             SRF EVA L +V  FEI  +I T +LS  TNY+ YLVFK  E    GFE+ P+E  V F 
Sbjct:   122 SRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLE--VSFR 179

Query:   189 GNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCES-EPTPK 247
                T   ++  +   +       +R DGW+EI +GE++    DD  +   V E+ E   K
Sbjct:   180 STRTEVYNNRRVFLKSGT---QESREDGWLEIELGEYY-VGFDDEEIEMSVLETREGGWK 235

Query:   248 CGIIIEGIELRPK 260
              GII++GIE+RPK
Sbjct:   236 GGIIVQGIEIRPK 248

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
 Identities = 72/185 (38%), Positives = 102/185 (55%)

Query:     6 AMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXXXXXX 65
             A+   CIS +IS  +P +A  ++S   + KS   SD VWE FLPS+Y             
Sbjct:    34 ALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLSK 93

Query:    66 XXXXXXXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWL 125
                       +  L  N +L+ N   SF ++  SGKKCYM+ A  L+I WG SP +WKW+
Sbjct:    94 KEI-------FLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query:   126 SLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETRE-GFETRPIEFD 184
             ++PES+F +VAEL+ V  FE+  +I   +LS  T+Y+ Y+VFK    R  GF+  P+E  
Sbjct:   147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query:   185 VYFEG 189
             V F G
Sbjct:   207 VGFVG 211

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 98/269 (36%), Positives = 137/269 (50%)

Query:    10 QCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXXXXXXXXXX 69
             +C+S I+S  +P +A  L+S    F S V SD VWEKF+P +Y                 
Sbjct:    42 ECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLSKKE 101

Query:    70 XXXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPE 129
                   YF LC   +LI++   S  ++  + K+C M+ A  L+I WG+SPQ W+W+  P+
Sbjct:   102 L-----YFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQ 156

Query:   130 SRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEG 189
             +RF  VAEL  V  FEI  RI ++++S KT Y+ Y+V+K +    GFE   +E  V   G
Sbjct:   157 ARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVG 216

Query:   190 NDTHK-----------MHSALLDPPANMPLLSLNRR-DGWMEIGIGEFFNENG---DDGA 234
              D  +           M            L+   RR DGWMEI IGEFFNE G   DD  
Sbjct:   217 QDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDDEI 276

Query:   235 VICRVCESEPTPKCGIIIEGIELRPKNGR 263
              +  +   +   K G+II+GIE+RP N R
Sbjct:   277 EMVALEAKQRHWKRGLIIQGIEIRPTNIR 305

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056271 PP2-B5 "phloem protein 2-B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 99/261 (37%), Positives = 135/261 (51%)

Query:    11 CISHIISLI-TPGNASKLSSTYPAFKSVVDSDSVWEKFLPS-DYXXXXXXXXXXXXXXXX 68
             C++ I S   TP +A   +    +F    +SDSVWEKFLP  DY                
Sbjct:    41 CLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPPPDYVSLLPKSRVFSSKKEL 100

Query:    69 XXXXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLP 128
                    YF LC +P   +N  MSF LD  SGKKC M+ A+ L I+   +P++WKW+S+P
Sbjct:   101 -------YFALC-DPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISIP 152

Query:   129 ESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFE 188
             ESRF EV EL  +  F+I   + T+I+S  T+Y+ Y+V+       GF+T PI+  V F+
Sbjct:   153 ESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSPIQAGVGFQ 212

Query:   189 GNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCESEPT--P 246
                 H M    +         S  R+DGWME  IG+F+NE G  G  +  V   +    P
Sbjct:   213 ---RHGMSKTFIR------FDSKKRQDGWMEAKIGDFYNEGGLIGFNLIEVSVVDVARYP 263

Query:   247 ----KCGIIIEGIELRPKNGR 263
                 K G+IIEGIE RPK+ R
Sbjct:   264 HMNMKSGLIIEGIEFRPKDSR 284

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2011791 PP2-B14 "phloem protein 2-B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 59/175 (33%), Positives = 88/175 (50%)

Query:    11 CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYXXXXXXXXXXXXXXXXXX 70
             CI++I++  +P +A   S     F+   DSD VWEKFLPSDY                  
Sbjct:     8 CIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWNISSKK 67

Query:    71 XXXXXYFHLCYNPILINNNTMSFALDHESGKKCYMVGARGLSITWGSSPQHWKWLSLPES 130
                  Y  LC + +LI+N    F ++  SGK  Y++ AR +SIT      +W W ++ +S
Sbjct:    68 EI---YRCLC-DSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSDS 123

Query:   131 RFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETRPIEFDV 185
             RF E AEL +    EI  +I+T++LS+ T Y  YL+ K  +   G +  P E  +
Sbjct:   124 RFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSI 178

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVQ6	P2B10_ARATH	No assigned EC number	0.4150	0.9467	0.9154	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
pfam14299	154	pfam14299, PP2, Phloem protein 2	1e-60

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  188 bits (479), Expect = 1e-60
 Identities = 75/162 (46%), Positives = 99/162 (61%), Gaps = 9/162 (5%)

Query: 100 GKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKT 159
           GKKCYM+ AR LSITWG  P++W+W+ LPESRF EVAEL  V   EI  +I T++LS  T
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 160 NYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWME 219
            Y+ YLVFK  +   G++ +P+EF V        +    +  P          R DGWME
Sbjct: 61  TYSAYLVFKLADRAYGWDEKPVEFSVSVPDGQKSRQERYVCLPE--------KRGDGWME 112

Query: 220 IGIGEFFNENGDDGAVICRVCESE-PTPKCGIIIEGIELRPK 260
           I +GEFFNE G+DG V   + E +    K G+I++GIE+RPK
Sbjct: 113 IEVGEFFNEGGEDGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.72
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.43
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.32
PF06881	109	Elongin_A: RNA polymerase II transcription factor	94.26
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.64
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	88.39
KOG3926	332	consensus F-box proteins [Amino acid transport and	87.28
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	82.06
PF02018	131	CBM_4_9: Carbohydrate binding domain; InterPro: IP	81.53

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=1.6e-65  Score=432.52  Aligned_cols=152  Identities=51%  Similarity=0.918  Sum_probs=143.8

Q ss_pred             CCeeEEeecccceeeeCCCCCceeEEecCCCCcccceEEeeeeEEEEEEEEeecccCCCCceEEEEEEEeecccCCCCcc
Q 024739          100 GKKCYMVGARGLSITWGSSPQHWKWLSLPESRFPEVAELKLVWCFEIMARIETKILSSKTNYATYLVFKFVETREGFETR  179 (263)
Q Consensus       100 G~kcymLsAR~L~ItWgdd~~yW~W~~~~~SrF~EvAeL~~VcWLEI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~  179 (263)
                      |+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CeEEEEEEeCCcee-eeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecCCCCceEEEEEEEe-CCCCccceEEEEEEE
Q 024739          180 PIEFDVYFEGNDTH-KMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDGAVICRVCES-EPTPKCGIIIEGIEL  257 (263)
Q Consensus       180 Pv~~~v~~~~~~~~-~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~~eV~fsl~e~-~~~wK~GLiv~GieI  257 (263)
                      ||+++|++++++.. +.+.+++         |++|+|||||||+|||+++++++++|+|+|+|+ +++||+||||+||||
T Consensus        81 pv~~~v~~~~~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieI  151 (154)
T PF14299_consen   81 PVEFSVKVPDGEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEI  151 (154)
T ss_pred             CEEEEEEeCCCccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEE
Confidence            99999999988763 2256664         567899999999999999988899999999999 899999999999999


Q ss_pred             Eec
Q 024739          258 RPK  260 (263)
Q Consensus       258 RPk  260 (263)
                      |||
T Consensus       152 RPK  154 (154)
T PF14299_consen  152 RPK  154 (154)
T ss_pred             ecC
Confidence            998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.72  E-value=1e-08  Score=69.37  Aligned_cols=44  Identities=16%  Similarity=0.418  Sum_probs=39.8

Q ss_pred             ccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccC
Q 024739            5 FAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFL   48 (263)
Q Consensus         5 ~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~fl   48 (263)
                      .+||++.+.+|+++++|.|.++++.||+.|+.++.++.+|.++.
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            58999999999999999999999999999999999999999764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.43  E-value=9.2e-08  Score=64.45  Aligned_cols=44  Identities=25%  Similarity=0.450  Sum_probs=38.9

Q ss_pred             cccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhccc
Q 024739            4 PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKF   47 (263)
Q Consensus         4 ~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~f   47 (263)
                      +.+||++++.+|++++++.|.++++.||+.|+.+++++.+|..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            57899999999999999999999999999999999999999865

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.32  E-value=4e-07  Score=58.71  Aligned_cols=40  Identities=23%  Similarity=0.467  Sum_probs=38.6

Q ss_pred             chHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcc
Q 024739            7 MFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEK   46 (263)
Q Consensus         7 Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~   46 (263)
                      ||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=94.26  E-value=0.032  Score=44.38  Aligned_cols=73  Identities=16%  Similarity=0.307  Sum_probs=57.8

Q ss_pred             CccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCchhhhccccCCCCCccccCCcHHHHHHhhcc
Q 024739            2 DSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCY   81 (263)
Q Consensus         2 ~~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~~~~skkely~~L~~   81 (263)
                      +.++++|.+.|.-||...+|....++..-|+.+  +-++|.+|.+|+-.||..-.....  +..   ..|-+++|..+.+
T Consensus         2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~--~~~---~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK--PKE---PESWRELYEKLKK   74 (109)
T ss_pred             CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc--ccc---cchHHHHHHHHHH
Confidence            568899999999999999999999999998765  456999999999999975222211  111   2588999998863

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.64  E-value=0.042  Score=51.87  Aligned_cols=82  Identities=7%  Similarity=0.066  Sum_probs=56.4

Q ss_pred             cccchHHHHHHHHhcCCh-----hhhhhhhccChhHHhhhccchhhcccCCCchhhhccccCCCCCc-cccCCcHHHHHH
Q 024739            4 PFAMFAQCISHIISLITP-----GNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSS-LVTSLSKKKLYF   77 (263)
Q Consensus         4 ~~~Lpe~cia~ils~~~P-----~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~-~~~~~skkely~   77 (263)
                      +..||++.+-.|+...=|     ++.-++|+||+.|+-+|..|.+|..+|=.-++.-+-...+ -.. ..-..|-+++|+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~-~~~~sky~~SWR~Mfl  185 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNP-KILQSKYYTSWREMFL  185 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccch-hhhhhHHHhHHHHHHh
Confidence            468999999988876555     9999999999999999999999999988766522211111 000 001257788887


Q ss_pred             hhccCCeeecC
Q 024739           78 HLCYNPILINN   88 (263)
Q Consensus        78 ~L~~~pvll~~   88 (263)
                      .=  .-|.+|+
T Consensus       186 ~R--pRvrFdG  194 (366)
T KOG2997|consen  186 ER--PRVRFDG  194 (366)
T ss_pred             hC--cceeecc
Confidence            53  2355544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=88.39  E-value=0.36  Score=46.60  Aligned_cols=40  Identities=13%  Similarity=0.141  Sum_probs=36.3

Q ss_pred             CCccccchHHHHHHHHhcC-ChhhhhhhhccChhHHhhhcc
Q 024739            1 MDSPFAMFAQCISHIISLI-TPGNASKLSSTYPAFKSVVDS   40 (263)
Q Consensus         1 ~~~~~~Lpe~cia~ils~~-~P~dacr~a~vs~~fr~aa~s   40 (263)
                      |..-.+||+|.+..|..++ +..|..|+++||+++|+|+..
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            4455789999999999999 799999999999999999986

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=87.28  E-value=0.39  Score=44.60  Aligned_cols=74  Identities=16%  Similarity=0.394  Sum_probs=55.0

Q ss_pred             cccchHHHHHHHHhcCC-hhhhhhhhccChhHHhhhccchhhcccCCCchh--hhccccCCCCCccccCCcHHHHHHhhc
Q 024739            4 PFAMFAQCISHIISLIT-PGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYK--KIISISSFSTSSLVTSLSKKKLYFHLC   80 (263)
Q Consensus         4 ~~~Lpe~cia~ils~~~-P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~--~i~~~~~~~~~~~~~~~skkely~~L~   80 (263)
                      |.|||++|+..||-+++ -+|.--+|-|-.++....+.+-+|.+.+.=.|.  +|-.....+-..   ..--|++|+.|-
T Consensus       202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~---q~dWkqmyf~L~  278 (332)
T KOG3926|consen  202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKG---QKDWKQMYFQLR  278 (332)
T ss_pred             cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccc---chhHHHHHHHHH
Confidence            57999999999998887 899999999999999999999999998875543  243332210000   123578888874

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=82.06  E-value=0.37  Score=45.89  Aligned_cols=50  Identities=6%  Similarity=-0.008  Sum_probs=45.7

Q ss_pred             cccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCchh
Q 024739            4 PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYK   53 (263)
Q Consensus         4 ~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~   53 (263)
                      ++.+|.+-+..+++++.++++.+.|+||+.+...++-+.+|++++-.++.
T Consensus         8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~   57 (386)
T KOG4408|consen    8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL   57 (386)
T ss_pred             hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc
Confidence            57888889999999999999999999999999999999999999866544

>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus

Probab=81.53  E-value=22  Score=27.29  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=43.8

Q ss_pred             ccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCCceeeeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecCCCCc
Q 024739          154 ILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGDDG  233 (263)
Q Consensus       154 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~~~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~~~  233 (263)
                      .|-||.+|.+.|-++....      .++.+.+...++.... ....-         ...-.+.|.+++ ++|... .+..
T Consensus        57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~W~~~s-~~ft~~-~~~~  118 (131)
T PF02018_consen   57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDEDGSPYN-WYTGQ---------TVTITGEWTKYS-GTFTAP-SDDD  118 (131)
T ss_dssp             EE-TTSEEEEEEEEEESSS------EEEEEEEEESSTTTEE-EEEEE---------EEEETSSEEEEE-EEEEEE-SSCE
T ss_pred             EecCCCEEEEEEEEEeCCC------CEEEEEEEEcCCCCcE-EEEEE---------EEECCCCcEEEE-EEEEEC-CCCc
Confidence            4559999999999999764      5777777776663111 00000         011247899999 589888 4455


Q ss_pred             eEEEEEE
Q 024739          234 AVICRVC  240 (263)
Q Consensus       234 eV~fsl~  240 (263)
                      .+.|.+.
T Consensus       119 ~~~l~~~  125 (131)
T PF02018_consen  119 TVRLYFE  125 (131)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            6666553

These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.79
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.67
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.01
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.61
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.23
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	87.51
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	86.81

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.79  E-value=3.9e-09  Score=71.97  Aligned_cols=45  Identities=16%  Similarity=0.213  Sum_probs=40.1

Q ss_pred             ccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhccc
Q 024739            3 SPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKF   47 (263)
Q Consensus         3 ~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~f   47 (263)
                      .+.+||++++.+|+++++|.|.+++++||+.|+.++.++.+|.++
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            467899999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.67  E-value=1.1e-08  Score=93.82  Aligned_cols=78  Identities=18%  Similarity=0.229  Sum_probs=62.6

Q ss_pred             CccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCchh---hhccccCCCCCc--------cc--c
Q 024739            2 DSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYK---KIISISSFSTSS--------LV--T   68 (263)
Q Consensus         2 ~~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~---~i~~~~~~~~~~--------~~--~   68 (263)
                      |++++||.+++.+|+||++|+|+|++|+||+.||.+|+++.+|+.||-.|++   ++-..+.|. ..        ..  -
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~-~~~~~~~~~~~~~~~   81 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD-LEILKKPISEVTDGA   81 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCS-CHHHHSSCSCC----
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcc-hhhccCccccccccc
Confidence            5789999999999999999999999999999999999999999999998754   444443321 10        00  0


Q ss_pred             CCcHHHHHHhhc
Q 024739           69 SLSKKKLYFHLC   80 (263)
Q Consensus        69 ~~skkely~~L~   80 (263)
                      ...++.+|.+=|
T Consensus        82 ~~~~~~~y~~~~   93 (312)
T 3l2o_B           82 FFDYMAVYRMCC   93 (312)
T ss_dssp             CCCHHHHHHHHC
T ss_pred             cccHHHHHHhcC
Confidence            346799999988

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.01  E-value=2.8e-06  Score=77.75  Aligned_cols=82  Identities=11%  Similarity=0.131  Sum_probs=61.4

Q ss_pred             CccccchHHHHHHHHhcCChhhhh-hhhccChhHHhhhccchhhcccCCCchhhhccccCCCCCccccCCcHHHHHHhhc
Q 024739            2 DSPFAMFAQCISHIISLITPGNAS-KLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLC   80 (263)
Q Consensus         2 ~~~~~Lpe~cia~ils~~~P~dac-r~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~~~~skkely~~L~   80 (263)
                      ..+..||++.+..||+++.|++.+ |+++||+.||..++++.+|.+.|...  .+...... +.+   ..+-|.+|+.--
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~-~~~---~~~Wk~~y~~~~  122 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA-DEE---RDHWQQFYFLSK  122 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC------C---CSCHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc-CCC---CCChhhhhehee
Confidence            456899999999999999999999 99999999999999999999998765  12211111 001   256899998743


Q ss_pred             cCCeeecCC
Q 024739           81 YNPILINNN   89 (263)
Q Consensus        81 ~~pvll~~g   89 (263)
                      -.-+||.|.
T Consensus       123 ~gRNLL~NP  131 (297)
T 2e31_A          123 RRRNLLRNP  131 (297)
T ss_dssp             HCCCCSSCS
T ss_pred             cccceeecC
Confidence            355666553

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.93  E-value=3.4e-06  Score=77.31  Aligned_cols=48  Identities=10%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             CccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCC
Q 024739            2 DSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLP   49 (263)
Q Consensus         2 ~~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP   49 (263)
                      +.+..||++++.+|+++++|.|.|++++||+.|+.+++++.+|.+++-
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            567899999999999999999999999999999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.61  E-value=1.6e-05  Score=72.80  Aligned_cols=46  Identities=11%  Similarity=0.187  Sum_probs=43.3

Q ss_pred             ccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhcc-chhhcccC
Q 024739            3 SPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDS-DSVWEKFL   48 (263)
Q Consensus         3 ~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~s-D~vW~~fl   48 (263)
                      -+..||++++.+|+++++|+|.|++++||+.|+.++++ +.+|.+++
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46789999999999999999999999999999999988 89999887

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.54  E-value=1.3e-05  Score=73.45  Aligned_cols=50  Identities=16%  Similarity=0.228  Sum_probs=45.8

Q ss_pred             CccccchHH----HHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCc
Q 024739            2 DSPFAMFAQ----CISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSD   51 (263)
Q Consensus         2 ~~~~~Lpe~----cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d   51 (263)
                      +-+..||++    .+.+|+++++|.|.|++++||+.|+.+++++.+|.+++..+
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            346789999    99999999999999999999999999999999999987654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.90  E-value=0.00053  Score=60.70  Aligned_cols=45  Identities=16%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             ccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhccc
Q 024739            3 SPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKF   47 (263)
Q Consensus         3 ~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~f   47 (263)
                      .+++||++++.+|+++++++|.++++.||+.|+.++.+...|..+
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            468999999999999999999999999999999999877788754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.11  E-value=0.01  Score=56.24  Aligned_cols=36  Identities=11%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             CccccchHHHHHHHHhcCC-hhhhhhhhccChhHHhh
Q 024739            2 DSPFAMFAQCISHIISLIT-PGNASKLSSTYPAFKSV   37 (263)
Q Consensus         2 ~~~~~Lpe~cia~ils~~~-P~dacr~a~vs~~fr~a   37 (263)
                      +.+++||++++.+|+++++ ++|++++|.||+.|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4578999999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.23  E-value=0.033  Score=52.85  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             ccchHHHHHHHHhcC-ChhhhhhhhccChhHHhhh
Q 024739            5 FAMFAQCISHIISLI-TPGNASKLSSTYPAFKSVV   38 (263)
Q Consensus         5 ~~Lpe~cia~ils~~-~P~dacr~a~vs~~fr~aa   38 (263)
                      .+||++|+.+|++++ +++|+++++.||+.|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            379999999999999 8999999999999999883

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=87.51  E-value=9.8  Score=30.56  Aligned_cols=99  Identities=9%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             EeecccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCCceeeeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecC
Q 024739          150 IETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNEN  229 (263)
Q Consensus       150 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~~~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~  229 (263)
                      +....|.||++|.+..-+++.+..   +...+.+++...+..... +...+..       -....++|.+++-|.|..+.
T Consensus        60 ~t~~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~-~y~~i~~-------~~~~~~~W~~L~G~~ft~~~  128 (160)
T 1dyo_A           60 LNPRTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ-RYDTIDM-------KTVGPNQWVHLYNPQYRIPS  128 (160)
T ss_dssp             ECTTTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE-EEEEEEE-------EEECSSCCEEEEEEEEECCT
T ss_pred             cchhhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE-EEEEEee-------EEEcCCccEEEECcEEEeCC
Confidence            333478999999999999987642   222344455442322111 1111111       01135789999987998865


Q ss_pred             CCCceEEEEEEEeCCCCccceEEEEEEEEecCC
Q 024739          230 GDDGAVICRVCESEPTPKCGIIIEGIELRPKNG  262 (263)
Q Consensus       230 ~~~~eV~fsl~e~~~~wK~GLiv~GieIRPk~~  262 (263)
                      .. ..+.+-+ | +..-..=+.|+.|.|.|...
T Consensus       129 ~~-~~~~lyv-e-~~~~~~d~yiDdv~i~~~g~  158 (160)
T 1dyo_A          129 DA-TDMYVYV-E-TADDTINFYIDEAIGAVAGT  158 (160)
T ss_dssp             TC-EEEEEEE-E-ESSCCCCEEEEEEEEEETTC
T ss_pred             CC-CEEEEEE-E-CCCCCccEEEEEEEEEeCcc
Confidence            42 2344322 3 23345568899999998753

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=86.81  E-value=0.2  Score=38.38  Aligned_cols=64  Identities=14%  Similarity=0.286  Sum_probs=39.3

Q ss_pred             chHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCchhhhccccCCCCCccccCCcHHHHHHhhcc
Q 024739            7 MFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDYKKIISISSFSTSSLVTSLSKKKLYFHLCY   81 (263)
Q Consensus         7 Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~~~~skkely~~L~~   81 (263)
                      .|.+.+.-||-.-+|....++-.-|+.+  +-++|-+|.+|+-.||..--   +   ..   .-|-+++|.+|.+
T Consensus        13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~---p---~e---~esWRelY~rl~~   76 (97)
T 4hfx_A           13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER---P---EE---YESWREMYLRLQD   76 (97)
T ss_dssp             -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC---C---CS---SSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC---C---CC---CCCHHHHHHHHHH
Confidence            5888888899999999999999999965  66899999999999998332   1   11   2689999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.95
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.89
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.31
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.15
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	89.46
d1guia_	155	Carbohydrate binding module from laminarinase 16A	87.22

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.5e-10  Score=73.27  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=39.6

Q ss_pred             cccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhh
Q 024739            4 PFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVW   44 (263)
Q Consensus         4 ~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW   44 (263)
                      ++.||++++.+|+++++|+|.||+++||+.|+.++.++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            46899999999999999999999999999999999999999

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=5.7e-10  Score=83.65  Aligned_cols=51  Identities=10%  Similarity=0.188  Sum_probs=46.4

Q ss_pred             CccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCch
Q 024739            2 DSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDY   52 (263)
Q Consensus         2 ~~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~   52 (263)
                      +-|..||++++.+|+++++|+|+|++|+||+.|+.++.+|.+|.+.+-.++
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~   67 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG   67 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence            457889999999999999999999999999999999999999998775543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=6.8e-08  Score=72.23  Aligned_cols=46  Identities=11%  Similarity=0.192  Sum_probs=41.1

Q ss_pred             CccccchHHHHHHHHhcCChhhhhhhhccChhHHhhhcc-chhhccc
Q 024739            2 DSPFAMFAQCISHIISLITPGNASKLSSTYPAFKSVVDS-DSVWEKF   47 (263)
Q Consensus         2 ~~~~~Lpe~cia~ils~~~P~dacr~a~vs~~fr~aa~s-D~vW~~f   47 (263)
                      +-+..||++.+.+|+++++|.|.|++|.||+.|+..+++ ..+|.++
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            346789999999999999999999999999999988765 4899875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-07  Score=71.82  Aligned_cols=49  Identities=14%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             cccchH----HHHHHHHhcCChhhhhhhhccChhHHhhhccchhhcccCCCch
Q 024739            4 PFAMFA----QCISHIISLITPGNASKLSSTYPAFKSVVDSDSVWEKFLPSDY   52 (263)
Q Consensus         4 ~~~Lpe----~cia~ils~~~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d~   52 (263)
                      +..||.    +.+..|+|+++|.|.|++|+||+.|+..++++.+|.+++-.++
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~   63 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV   63 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence            456774    9999999999999999999999999999999999999875543

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=89.46  E-value=2.8  Score=30.41  Aligned_cols=99  Identities=8%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             EEeecccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCCceeeeEEEEcCCCCCCCccccccCCCeEEEEeeeEEec
Q 024739          149 RIETKILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDTHKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNE  228 (263)
Q Consensus       149 ~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~~~~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~  228 (263)
                      .+....|.||++|.+.+-+|+.+...+   ..+.+.+...++.... ....+.       ......++|.++..++|...
T Consensus        56 ~~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~W~~~~~~~~~~~  124 (157)
T d1h6ya_          56 ALNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVDGSGTQ-RYDTID-------MKTVGPNQWVHLYNPQYRIP  124 (157)
T ss_dssp             ECCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEECTTSCE-EEEEEE-------EEEECTTCCEEEEEEEEECC
T ss_pred             EecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEecCCCce-eEEEee-------EEEeccCccEEEEEEEEECC
Confidence            344456899999999999998764322   2334444444433222 111111       11122578999988898776


Q ss_pred             CCCCceEEEEEEEeCCCCccceEEEEEEEEecC
Q 024739          229 NGDDGAVICRVCESEPTPKCGIIIEGIELRPKN  261 (263)
Q Consensus       229 ~~~~~eV~fsl~e~~~~wK~GLiv~GieIRPk~  261 (263)
                      .+. ..+.|-+ +. ..-..-+.|+-+.+.|++
T Consensus       125 ~~~-~~~~l~~-~~-~~~~~~~yiDDv~~~~~~  154 (157)
T d1h6ya_         125 SDA-TDMYVYV-AT-ADDTINFYIDEAIGAVAG  154 (157)
T ss_dssp             TTC-EEEEEEE-EE-SSCCCCEEEEEEEEEETT
T ss_pred             CCC-cEEEEEE-EC-CCCCceEEEeeEEEeccc
Confidence            533 3455533 22 222233999999999986

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=87.22  E-value=4.1  Score=29.68  Aligned_cols=86  Identities=13%  Similarity=0.160  Sum_probs=51.3

Q ss_pred             ccCCCCceEEEEEEEeecccCCCCccCeEEEEEEeCCce--eeeEEEEcCCCCCCCccccccCCCeEEEEeeeEEecCCC
Q 024739          154 ILSSKTNYATYLVFKFVETREGFETRPIEFDVYFEGNDT--HKMHSALLDPPANMPLLSLNRRDGWMEIGIGEFFNENGD  231 (263)
Q Consensus       154 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~Pv~~~v~~~~~~~--~~~~~v~L~~~~~~~~~P~~r~DgW~Eie~GeF~~~~~~  231 (263)
                      .|.||.+|.+.|..|-...      .++.+.+...++..  .....+.             ....|.++++ +|......
T Consensus        68 ~l~~g~~Y~lSf~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------------~t~~W~~~s~-~f~~~~~~  127 (155)
T d1guia_          68 GLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTVN-------------LTADWQTFTF-TYTHPDDA  127 (155)
T ss_dssp             ECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEEE-------------ECSSCEEEEE-EEECCTTS
T ss_pred             EecCCCEEEEEEEEEeCCC------CcEEEEEEEcCCCCeEEeeeEEe-------------eccccEEEEE-EEEecCCC
Confidence            4779999999998885432      23344443322211  1101111             2457999984 78776654


Q ss_pred             CceEEEEEEEeCCCCccceEEEEEEEEec
Q 024739          232 DGAVICRVCESEPTPKCGIIIEGIELRPK  260 (263)
Q Consensus       232 ~~eV~fsl~e~~~~wK~GLiv~GieIRPk  260 (263)
                      +..+.+.+. .++.-.+.+.|+-|.|-||
T Consensus       128 ~~~~~l~~~-~~~~~~~~~~iDnV~l~~~  155 (155)
T d1guia_         128 DEVVQISFE-LGEGTATTIYFDDVTVSPQ  155 (155)
T ss_dssp             CSEEEEEEE-CCSSCCCEEEEEEEEEEEC
T ss_pred             CccEEEEEE-ECCCCCcEEEEEEEEEEEC
Confidence            455555443 3333356799999999997